@realsee/dnalogel 2.1.0-alpha.13 → 2.1.0-alpha.15

package/libs/node_modules/glob/sync.js

@@ -0,0 +1,405 @@
+module.exports = globSync;
+globSync.GlobSync = GlobSync;
+var rp = require('fs.realpath');
+var minimatch = require('minimatch');
+var Minimatch = minimatch.Minimatch;
+var Glob = require('./glob.js').Glob;
+var util = require('util');
+var path = require('path');
+var assert = require('assert');
+var isAbsolute = require('path').isAbsolute;
+var common = require('./common.js');
+var setopts = common.setopts;
+var ownProp = common.ownProp;
+var childrenIgnored = common.childrenIgnored;
+var isIgnored = common.isIgnored;
+function globSync(pattern, options) {
+    if (typeof options === 'function' || arguments.length === 3)
+        throw new TypeError('callback provided to sync glob\n' +
+            'See: https://github.com/isaacs/node-glob/issues/167');
+    return new GlobSync(pattern, options).found;
+}
+function GlobSync(pattern, options) {
+    if (!pattern)
+        throw new Error('must provide pattern');
+    if (typeof options === 'function' || arguments.length === 3)
+        throw new TypeError('callback provided to sync glob\n' +
+            'See: https://github.com/isaacs/node-glob/issues/167');
+    if (!(this instanceof GlobSync))
+        return new GlobSync(pattern, options);
+    setopts(this, pattern, options);
+    if (this.noprocess)
+        return this;
+    var n = this.minimatch.set.length;
+    this.matches = new Array(n);
+    for (var i = 0; i < n; i++) {
+        this._process(this.minimatch.set[i], i, false);
+    }
+    this._finish();
+}
+GlobSync.prototype._finish = function () {
+    assert.ok(this instanceof GlobSync);
+    if (this.realpath) {
+        var self = this;
+        this.matches.forEach(function (matchset, index) {
+            var set = self.matches[index] = Object.create(null);
+            for (var p in matchset) {
+                try {
+                    p = self._makeAbs(p);
+                    var real = rp.realpathSync(p, self.realpathCache);
+                    set[real] = true;
+                }
+                catch (er) {
+                    if (er.syscall === 'stat')
+                        set[self._makeAbs(p)] = true;
+                    else
+                        throw er;
+                }
+            }
+        });
+    }
+    common.finish(this);
+};
+GlobSync.prototype._process = function (pattern, index, inGlobStar) {
+    assert.ok(this instanceof GlobSync);
+    // Get the first [n] parts of pattern that are all strings.
+    var n = 0;
+    while (typeof pattern[n] === 'string') {
+        n++;
+    }
+    // now n is the index of the first one that is *not* a string.
+    // See if there's anything else
+    var prefix;
+    switch (n) {
+        // if not, then this is rather simple
+        case pattern.length:
+            this._processSimple(pattern.join('/'), index);
+            return;
+        case 0:
+            // pattern *starts* with some non-trivial item.
+            // going to readdir(cwd), but not include the prefix in matches.
+            prefix = null;
+            break;
+        default:
+            // pattern has some string bits in the front.
+            // whatever it starts with, whether that's 'absolute' like /foo/bar,
+            // or 'relative' like '../baz'
+            prefix = pattern.slice(0, n).join('/');
+            break;
+    }
+    var remain = pattern.slice(n);
+    // get the list of entries.
+    var read;
+    if (prefix === null)
+        read = '.';
+    else if (isAbsolute(prefix) ||
+        isAbsolute(pattern.map(function (p) {
+            return typeof p === 'string' ? p : '[*]';
+        }).join('/'))) {
+        if (!prefix || !isAbsolute(prefix))
+            prefix = '/' + prefix;
+        read = prefix;
+    }
+    else
+        read = prefix;
+    var abs = this._makeAbs(read);
+    //if ignored, skip processing
+    if (childrenIgnored(this, read))
+        return;
+    var isGlobStar = remain[0] === minimatch.GLOBSTAR;
+    if (isGlobStar)
+        this._processGlobStar(prefix, read, abs, remain, index, inGlobStar);
+    else
+        this._processReaddir(prefix, read, abs, remain, index, inGlobStar);
+};
+GlobSync.prototype._processReaddir = function (prefix, read, abs, remain, index, inGlobStar) {
+    var entries = this._readdir(abs, inGlobStar);
+    // if the abs isn't a dir, then nothing can match!
+    if (!entries)
+        return;
+    // It will only match dot entries if it starts with a dot, or if
+    // dot is set.  Stuff like @(.foo|.bar) isn't allowed.
+    var pn = remain[0];
+    var negate = !!this.minimatch.negate;
+    var rawGlob = pn._glob;
+    var dotOk = this.dot || rawGlob.charAt(0) === '.';
+    var matchedEntries = [];
+    for (var i = 0; i < entries.length; i++) {
+        var e = entries[i];
+        if (e.charAt(0) !== '.' || dotOk) {
+            var m;
+            if (negate && !prefix) {
+                m = !e.match(pn);
+            }
+            else {
+                m = e.match(pn);
+            }
+            if (m)
+                matchedEntries.push(e);
+        }
+    }
+    var len = matchedEntries.length;
+    // If there are no matched entries, then nothing matches.
+    if (len === 0)
+        return;
+    // if this is the last remaining pattern bit, then no need for
+    // an additional stat *unless* the user has specified mark or
+    // stat explicitly.  We know they exist, since readdir returned
+    // them.
+    if (remain.length === 1 && !this.mark && !this.stat) {
+        if (!this.matches[index])
+            this.matches[index] = Object.create(null);
+        for (var i = 0; i < len; i++) {
+            var e = matchedEntries[i];
+            if (prefix) {
+                if (prefix.slice(-1) !== '/')
+                    e = prefix + '/' + e;
+                else
+                    e = prefix + e;
+            }
+            if (e.charAt(0) === '/' && !this.nomount) {
+                e = path.join(this.root, e);
+            }
+            this._emitMatch(index, e);
+        }
+        // This was the last one, and no stats were needed
+        return;
+    }
+    // now test all matched entries as stand-ins for that part
+    // of the pattern.
+    remain.shift();
+    for (var i = 0; i < len; i++) {
+        var e = matchedEntries[i];
+        var newPattern;
+        if (prefix)
+            newPattern = [prefix, e];
+        else
+            newPattern = [e];
+        this._process(newPattern.concat(remain), index, inGlobStar);
+    }
+};
+GlobSync.prototype._emitMatch = function (index, e) {
+    if (isIgnored(this, e))
+        return;
+    var abs = this._makeAbs(e);
+    if (this.mark)
+        e = this._mark(e);
+    if (this.absolute) {
+        e = abs;
+    }
+    if (this.matches[index][e])
+        return;
+    if (this.nodir) {
+        var c = this.cache[abs];
+        if (c === 'DIR' || Array.isArray(c))
+            return;
+    }
+    this.matches[index][e] = true;
+    if (this.stat)
+        this._stat(e);
+};
+GlobSync.prototype._readdirInGlobStar = function (abs) {
+    // follow all symlinked directories forever
+    // just proceed as if this is a non-globstar situation
+    if (this.follow)
+        return this._readdir(abs, false);
+    var entries;
+    var lstat;
+    var stat;
+    try {
+        lstat = this.fs.lstatSync(abs);
+    }
+    catch (er) {
+        if (er.code === 'ENOENT') {
+            // lstat failed, doesn't exist
+            return null;
+        }
+    }
+    var isSym = lstat && lstat.isSymbolicLink();
+    this.symlinks[abs] = isSym;
+    // If it's not a symlink or a dir, then it's definitely a regular file.
+    // don't bother doing a readdir in that case.
+    if (!isSym && lstat && !lstat.isDirectory())
+        this.cache[abs] = 'FILE';
+    else
+        entries = this._readdir(abs, false);
+    return entries;
+};
+GlobSync.prototype._readdir = function (abs, inGlobStar) {
+    var entries;
+    if (inGlobStar && !ownProp(this.symlinks, abs))
+        return this._readdirInGlobStar(abs);
+    if (ownProp(this.cache, abs)) {
+        var c = this.cache[abs];
+        if (!c || c === 'FILE')
+            return null;
+        if (Array.isArray(c))
+            return c;
+    }
+    try {
+        return this._readdirEntries(abs, this.fs.readdirSync(abs));
+    }
+    catch (er) {
+        this._readdirError(abs, er);
+        return null;
+    }
+};
+GlobSync.prototype._readdirEntries = function (abs, entries) {
+    // if we haven't asked to stat everything, then just
+    // assume that everything in there exists, so we can avoid
+    // having to stat it a second time.
+    if (!this.mark && !this.stat) {
+        for (var i = 0; i < entries.length; i++) {
+            var e = entries[i];
+            if (abs === '/')
+                e = abs + e;
+            else
+                e = abs + '/' + e;
+            this.cache[e] = true;
+        }
+    }
+    this.cache[abs] = entries;
+    // mark and cache dir-ness
+    return entries;
+};
+GlobSync.prototype._readdirError = function (f, er) {
+    // handle errors, and cache the information
+    switch (er.code) {
+        case 'ENOTSUP': // https://github.com/isaacs/node-glob/issues/205
+        case 'ENOTDIR': // totally normal. means it *does* exist.
+            var abs = this._makeAbs(f);
+            this.cache[abs] = 'FILE';
+            if (abs === this.cwdAbs) {
+                var error = new Error(er.code + ' invalid cwd ' + this.cwd);
+                error.path = this.cwd;
+                error.code = er.code;
+                throw error;
+            }
+            break;
+        case 'ENOENT': // not terribly unusual
+        case 'ELOOP':
+        case 'ENAMETOOLONG':
+        case 'UNKNOWN':
+            this.cache[this._makeAbs(f)] = false;
+            break;
+        default: // some unusual error.  Treat as failure.
+            this.cache[this._makeAbs(f)] = false;
+            if (this.strict)
+                throw er;
+            if (!this.silent)
+                console.error('glob error', er);
+            break;
+    }
+};
+GlobSync.prototype._processGlobStar = function (prefix, read, abs, remain, index, inGlobStar) {
+    var entries = this._readdir(abs, inGlobStar);
+    // no entries means not a dir, so it can never have matches
+    // foo.txt/** doesn't match foo.txt
+    if (!entries)
+        return;
+    // test without the globstar, and with every child both below
+    // and replacing the globstar.
+    var remainWithoutGlobStar = remain.slice(1);
+    var gspref = prefix ? [prefix] : [];
+    var noGlobStar = gspref.concat(remainWithoutGlobStar);
+    // the noGlobStar pattern exits the inGlobStar state
+    this._process(noGlobStar, index, false);
+    var len = entries.length;
+    var isSym = this.symlinks[abs];
+    // If it's a symlink, and we're in a globstar, then stop
+    if (isSym && inGlobStar)
+        return;
+    for (var i = 0; i < len; i++) {
+        var e = entries[i];
+        if (e.charAt(0) === '.' && !this.dot)
+            continue;
+        // these two cases enter the inGlobStar state
+        var instead = gspref.concat(entries[i], remainWithoutGlobStar);
+        this._process(instead, index, true);
+        var below = gspref.concat(entries[i], remain);
+        this._process(below, index, true);
+    }
+};
+GlobSync.prototype._processSimple = function (prefix, index) {
+    // XXX review this.  Shouldn't it be doing the mounting etc
+    // before doing stat?  kinda weird?
+    var exists = this._stat(prefix);
+    if (!this.matches[index])
+        this.matches[index] = Object.create(null);
+    // If it doesn't exist, then just mark the lack of results
+    if (!exists)
+        return;
+    if (prefix && isAbsolute(prefix) && !this.nomount) {
+        var trail = /[\/\\]$/.test(prefix);
+        if (prefix.charAt(0) === '/') {
+            prefix = path.join(this.root, prefix);
+        }
+        else {
+            prefix = path.resolve(this.root, prefix);
+            if (trail)
+                prefix += '/';
+        }
+    }
+    if (process.platform === 'win32')
+        prefix = prefix.replace(/\\/g, '/');
+    // Mark this as a match
+    this._emitMatch(index, prefix);
+};
+// Returns either 'DIR', 'FILE', or false
+GlobSync.prototype._stat = function (f) {
+    var abs = this._makeAbs(f);
+    var needDir = f.slice(-1) === '/';
+    if (f.length > this.maxLength)
+        return false;
+    if (!this.stat && ownProp(this.cache, abs)) {
+        var c = this.cache[abs];
+        if (Array.isArray(c))
+            c = 'DIR';
+        // It exists, but maybe not how we need it
+        if (!needDir || c === 'DIR')
+            return c;
+        if (needDir && c === 'FILE')
+            return false;
+        // otherwise we have to stat, because maybe c=true
+        // if we know it exists, but not what it is.
+    }
+    var exists;
+    var stat = this.statCache[abs];
+    if (!stat) {
+        var lstat;
+        try {
+            lstat = this.fs.lstatSync(abs);
+        }
+        catch (er) {
+            if (er && (er.code === 'ENOENT' || er.code === 'ENOTDIR')) {
+                this.statCache[abs] = false;
+                return false;
+            }
+        }
+        if (lstat && lstat.isSymbolicLink()) {
+            try {
+                stat = this.fs.statSync(abs);
+            }
+            catch (er) {
+                stat = lstat;
+            }
+        }
+        else {
+            stat = lstat;
+        }
+    }
+    this.statCache[abs] = stat;
+    var c = true;
+    if (stat)
+        c = stat.isDirectory() ? 'DIR' : 'FILE';
+    this.cache[abs] = this.cache[abs] || c;
+    if (needDir && c === 'FILE')
+        return false;
+    return c;
+};
+GlobSync.prototype._mark = function (p) {
+    return common.mark(this, p);
+};
+GlobSync.prototype._makeAbs = function (f) {
+    return common.makeAbs(this, f);
+};

package/libs/node_modules/minimatch/lib/path.d.ts

@@ -0,0 +1 @@
+export const sep: string;

package/libs/node_modules/minimatch/lib/path.js

@@ -0,0 +1,4 @@
+const isWindows = typeof process === 'object' &&
+    process &&
+    process.platform === 'win32';
+module.exports = isWindows ? { sep: '\\' } : { sep: '/' };

package/libs/node_modules/minimatch/minimatch.d.ts

@@ -0,0 +1,36 @@
+declare function _exports(p: any, pattern: any, options?: {}): boolean;
+declare namespace _exports {
+    export const sep: string;
+    export { GLOBSTAR };
+    export function filter(pattern: any, options?: {}): (p: any, i: any, list: any) => boolean;
+    export function defaults(def: any): any;
+    export function braceExpand(pattern: any, options: any): any;
+    export function makeRe(pattern: any, options: any): boolean | RegExp;
+    export function match(list: any, pattern: any, options?: {}): any;
+    export { Minimatch };
+}
+export = _exports;
+declare const GLOBSTAR: unique symbol;
+declare class Minimatch {
+    static defaults(def: any): any;
+    constructor(pattern: any, options: any);
+    options: any;
+    set: any[];
+    pattern: any;
+    windowsPathsNoEscape: boolean;
+    regexp: boolean | RegExp;
+    negate: boolean;
+    comment: boolean;
+    empty: boolean;
+    partial: boolean;
+    debug(): void;
+    make(): void;
+    globSet: any;
+    globParts: any;
+    parseNegate(): void;
+    matchOne(file: any, pattern: any, partial: any): any;
+    braceExpand(): any;
+    parse(pattern: any, isSub: any): any;
+    makeRe(): boolean | RegExp;
+    match(f: any, partial?: boolean): boolean;
+}