@rdfc/sparql-ingest-processor-ts 0.3.0 → 0.4.1

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Files changed (11) hide show
  1. package/lib/LogUtil.d.ts +9 -0
  2. package/lib/LogUtil.js +54 -0
  3. package/lib/SPARQLIngest.d.ts +26 -0
  4. package/lib/SPARQLIngest.js +51 -63
  5. package/lib/SPARQLQueries.d.ts +4 -0
  6. package/lib/SPARQLQueries.js +45 -48
  7. package/lib/Utils.d.ts +7 -0
  8. package/lib/Utils.js +71 -14
  9. package/lib/tsconfig.tsbuildinfo +1 -1
  10. package/package.json +25 -16
  11. package/processors.ttl +0 -1
package/lib/LogUtil.d.ts ADDED
@@ -0,0 +1,9 @@
1
+ import { Logger } from "winston";
2
+ export declare function getLoggerFor(loggable: string | Instance): Logger;
3
+ interface Constructor {
4
+ name: string;
5
+ }
6
+ interface Instance {
7
+ constructor: Constructor;
8
+ }
9
+ export {};
package/lib/LogUtil.js ADDED
@@ -0,0 +1,54 @@
1
+ import winston, { format } from "winston";
2
+ const PROCESSOR_NAME = "sparql-ingest";
3
+ const consoleTransport = new winston.transports.Console({
4
+ stderrLevels: [
5
+ "error",
6
+ "warn",
7
+ "info",
8
+ "http",
9
+ "verbose",
10
+ "debug",
11
+ "silly"
12
+ ]
13
+ });
14
+ if (typeof process !== "undefined") {
15
+ consoleTransport.level =
16
+ process.env.LOG_LEVEL ||
17
+ (process.env.DEBUG?.includes(PROCESSOR_NAME) ||
18
+ process.env.DEBUG === "*"
19
+ ? "debug"
20
+ : "info");
21
+ }
22
+ const classLoggers = new WeakMap();
23
+ const stringLoggers = new Map();
24
+ export function getLoggerFor(loggable) {
25
+ let logger;
26
+ if (typeof loggable === "string") {
27
+ if (stringLoggers.has(loggable)) {
28
+ logger = stringLoggers.get(loggable);
29
+ }
30
+ else {
31
+ logger = createLogger(loggable);
32
+ stringLoggers.set(loggable, logger);
33
+ }
34
+ }
35
+ else {
36
+ const { constructor } = loggable;
37
+ if (classLoggers.has(constructor)) {
38
+ logger = classLoggers.get(constructor);
39
+ }
40
+ else {
41
+ logger = createLogger(constructor.name);
42
+ classLoggers.set(constructor, logger);
43
+ }
44
+ }
45
+ return logger;
46
+ }
47
+ function createLogger(label) {
48
+ return winston.createLogger({
49
+ format: format.combine(format.label({ label }), format.colorize(), format.timestamp(), format.metadata({
50
+ fillExcept: ["level", "timestamp", "label", "message"],
51
+ }), format.printf(({ level: levelInner, message, label: labelInner, timestamp, }) => `${timestamp} {${PROCESSOR_NAME}} [${labelInner}] ${levelInner}: ${message}`)),
52
+ transports: [consoleTransport],
53
+ });
54
+ }
package/lib/SPARQLIngest.d.ts ADDED
@@ -0,0 +1,26 @@
1
+ import type { Stream, Writer } from "@rdfc/js-runner";
2
+ import { RdfStore } from "rdf-stores";
3
+ export type ChangeSemantics = {
4
+ changeTypePath: string;
5
+ createValue: string;
6
+ updateValue: string;
7
+ deleteValue: string;
8
+ };
9
+ export type TransactionConfig = {
10
+ transactionIdPath: string;
11
+ transactionEndPath: string;
12
+ };
13
+ export type IngestConfig = {
14
+ memberIsGraph: boolean;
15
+ memberShapes?: string[];
16
+ changeSemantics?: ChangeSemantics;
17
+ targetNamedGraph?: string;
18
+ transactionConfig?: TransactionConfig;
19
+ graphStoreUrl?: string;
20
+ };
21
+ export type TransactionMember = {
22
+ memberId: string;
23
+ transactionId: string;
24
+ store: RdfStore;
25
+ };
26
+ export declare function sparqlIngest(memberStream: Stream<string>, config: IngestConfig, sparqlWriter?: Writer<string>): Promise<void>;
package/lib/SPARQLIngest.js CHANGED
@@ -1,34 +1,34 @@
1
1
  import { SDS } from "@treecg/types";
2
- import { Store, Parser, DataFactory } from "n3";
3
- import { CREATE, UPDATE, DELETE } from "./SPARQLQueries";
4
- import { doSPARQLRequest, sanitizeQuads } from "./Utils";
5
- const { quad, namedNode } = DataFactory;
2
+ import { DataFactory } from "rdf-data-factory";
3
+ import { RdfStore } from "rdf-stores";
4
+ import { Parser } from "n3";
5
+ import { CREATE, UPDATE, DELETE } from "./SPARQLQueries.js";
6
+ import { doSPARQLRequest, sanitizeQuads, getObjects } from "./Utils.js";
7
+ import { getLoggerFor } from "./LogUtil.js";
8
+ const df = new DataFactory();
6
9
  export async function sparqlIngest(memberStream, config, sparqlWriter) {
10
+ const logger = getLoggerFor("sparqlIngest");
7
11
  let transactionMembers = [];
8
12
  memberStream.data(async (rawQuads) => {
13
+ logger.debug(`Raw member data received: \n${rawQuads}`);
9
14
  const quads = new Parser().parse(rawQuads);
10
- const store = new Store(quads);
11
- // Get member IRI form SDS description
12
- const memberIRI = store.getObjects(null, SDS.payload, null)[0];
15
+ logger.verbose(`Parsed ${quads.length} quads from received member data`);
16
+ const store = RdfStore.createDefault();
17
+ quads.forEach(q => store.addQuad(q));
18
+ const memberIRI = getObjects(store, null, SDS.terms.payload, SDS.terms.custom("DataDescription"))[0];
19
+ logger.verbose(`Member IRI found: ${memberIRI ? memberIRI.value : "none"}`);
13
20
  if (memberIRI) {
14
- // Remove SDS wrapper
15
- store.removeQuads(store.getQuads(null, SDS.stream, null, null));
16
- store.removeQuads(store.getQuads(null, SDS.payload, null, null));
17
- // Find if this member is part of a transaction
21
+ const sdsQuads = store.getQuads(null, null, null, SDS.terms.custom("DataDescription"));
22
+ sdsQuads.forEach(q => store.removeQuad(q));
18
23
  if (config.transactionConfig) {
19
- const transactionId = store.getObjects(null, config.transactionConfig.transactionIdPath, null)[0];
24
+ const transactionId = getObjects(store, null, df.namedNode(config.transactionConfig.transactionIdPath), null)[0];
20
25
  if (transactionId) {
21
- // Remove transactionId property
22
- store.removeQuad(quad(memberIRI, namedNode(config.transactionConfig.transactionIdPath), transactionId));
23
- // See if this is a finishing, new or ongoing transaction
24
- const isLastOfTransaction = store.getObjects(null, config.transactionConfig.transactionEndPath, null)[0];
26
+ store.removeQuad(df.quad(memberIRI, df.namedNode(config.transactionConfig.transactionIdPath), transactionId));
27
+ const isLastOfTransaction = getObjects(store, null, df.namedNode(config.transactionConfig.transactionEndPath), null)[0];
25
28
  if (isLastOfTransaction) {
26
- console.log(`[sparqlIngest] Last member of ${transactionId.value} received!`);
27
- // Check this transaction is correct
29
+ logger.info(`Last member of ${transactionId.value} received!`);
28
30
  verifyTransaction(transactionMembers.map(ts => ts.store), config.transactionConfig.transactionIdPath, transactionId);
29
- // Remove is-last-of-transaction flag
30
- store.removeQuad(quad(memberIRI, namedNode(config.transactionConfig.transactionEndPath), isLastOfTransaction));
31
- // We copy all previous member quads into the current store
31
+ store.removeQuad(df.quad(memberIRI, df.namedNode(config.transactionConfig.transactionEndPath), isLastOfTransaction));
32
32
  transactionMembers.push({
33
33
  memberId: memberIRI.value,
34
34
  transactionId: transactionId.value,
@@ -36,9 +36,7 @@ export async function sparqlIngest(memberStream, config, sparqlWriter) {
36
36
  });
37
37
  }
38
38
  else if (transactionMembers.length > 0) {
39
- // Check this transaction is correct
40
39
  verifyTransaction(transactionMembers.map(ts => ts.store), config.transactionConfig.transactionIdPath, transactionId);
41
- // Is an ongoing transaction, so we add this member's quads into the transaction store
42
40
  transactionMembers.push({
43
41
  memberId: memberIRI.value,
44
42
  transactionId: transactionId.value,
@@ -47,11 +45,10 @@ export async function sparqlIngest(memberStream, config, sparqlWriter) {
47
45
  return;
48
46
  }
49
47
  else {
50
- console.log(`[sparqlIngest] New transaction ${transactionId.value} started!`);
48
+ logger.info(`New transaction ${transactionId.value} started!`);
51
49
  if (transactionMembers.length > 0)
52
- throw new Error(`[sparqlIngest] Received new transaction ${transactionId.value}, `
50
+ throw new Error(`Received new transaction ${transactionId.value}, `
53
51
  + `but older transaction ${transactionMembers[0].transactionId} hasn't been finalized `);
54
- // Is a new transaction, add it to the transaction store
55
52
  transactionMembers.push({
56
53
  memberId: memberIRI.value,
57
54
  transactionId: transactionId.value,
@@ -61,36 +58,28 @@ export async function sparqlIngest(memberStream, config, sparqlWriter) {
61
58
  }
62
59
  }
63
60
  }
64
- // Variable that will hold the full query to be executed
65
61
  let query;
66
- let queryType;
67
62
  if (config.changeSemantics) {
68
63
  if (transactionMembers.length > 0) {
69
64
  query = createTransactionQueries(transactionMembers, config);
70
- // Clean up transaction stores
71
65
  transactionMembers = [];
72
66
  }
73
67
  else {
74
- // Determine if we have a named graph (either explicitly configured or as the member itself)
75
68
  const ng = getNamedGraphIfAny(memberIRI, config.memberIsGraph, config.targetNamedGraph);
76
- // Get the type of change
77
- const ctv = store.getQuads(null, config.changeSemantics.changeTypePath, null, null)[0];
78
- // Remove change type quad from store
69
+ const ctv = store.getQuads(null, df.namedNode(config.changeSemantics.changeTypePath))[0];
79
70
  store.removeQuad(ctv);
80
- // Sanitize quads to prevent issues on SPARQL queries
81
71
  sanitizeQuads(store);
82
- // Assemble corresponding SPARQL UPDATE query
83
72
  if (ctv.object.value === config.changeSemantics.createValue) {
73
+ logger.info(`Preparing 'INSERT DATA {}' SPARQL query for member ${memberIRI.value}`);
84
74
  query = CREATE(store, ng);
85
- queryType = "CREATE";
86
75
  }
87
76
  else if (ctv.object.value === config.changeSemantics.updateValue) {
77
+ logger.info(`Preparing 'DELETE {} INSERT {} WHERE {}' SPARQL query for member ${memberIRI.value}`);
88
78
  query = UPDATE(store, ng);
89
- queryType = "UPDATE";
90
79
  }
91
80
  else if (ctv.object.value === config.changeSemantics.deleteValue) {
81
+ logger.info(`Preparing 'DELETE WHERE {}' SPARQL query for member ${memberIRI.value}`);
92
82
  query = DELETE(store, [memberIRI.value], config.memberShapes, ng);
93
- queryType = "DELETE";
94
83
  }
95
84
  else {
96
85
  throw new Error(`[sparqlIngest] Unrecognized change type value: ${ctv.object.value}`);
@@ -99,27 +88,30 @@ export async function sparqlIngest(memberStream, config, sparqlWriter) {
99
88
  }
100
89
  else {
101
90
  if (transactionMembers.length > 0) {
102
- transactionMembers.forEach(ts => store.addQuads(ts.store.getQuads(null, null, null, null)));
91
+ transactionMembers.forEach(ts => {
92
+ ts.store.getQuads(null, null, null, null).forEach(q => store.addQuad(q));
93
+ });
94
+ logger.info(`Preparing 'DELETE {} WHERE {} + INSERT DATA {}' SPARQL query for transaction member ${memberIRI.value}`);
103
95
  query = UPDATE(store, config.targetNamedGraph);
104
96
  }
105
97
  else {
106
- // Determine if we have a named graph (either explicitly configure or as the member itself)
107
98
  const ng = getNamedGraphIfAny(memberIRI, config.memberIsGraph, config.targetNamedGraph);
108
- // No change semantics are provided so we do a DELETE/INSERT query by default
99
+ logger.info(`Preparing 'DELETE {} WHERE {} + INSERT DATA {}' SPARQL query for member ${memberIRI.value}`);
109
100
  query = UPDATE(store, ng);
110
101
  }
111
102
  }
112
- // Execute the update query
113
103
  if (query) {
114
- const outputPromises = [];
115
- if (sparqlWriter) {
116
- outputPromises.push(sparqlWriter.push(query));
117
- }
104
+ logger.debug(`Generated SPARQL query: \n${query}`);
118
105
  if (config.graphStoreUrl) {
119
- outputPromises.push(doSPARQLRequest(query, config.graphStoreUrl));
106
+ await doSPARQLRequest(query, config.graphStoreUrl);
107
+ logger.info(`Executed query on remote SPARQL server ${config.graphStoreUrl}`);
108
+ }
109
+ if (sparqlWriter) {
110
+ await sparqlWriter.push(query);
120
111
  }
121
- await Promise.all(outputPromises);
122
- console.log(`[sparqlIngest] Executed ${queryType} on remote SPARQL server ${config.graphStoreUrl} - ${new Date().toISOString()}`);
112
+ }
113
+ else {
114
+ logger.warn(`No query generated for member ${memberIRI.value}`);
123
115
  }
124
116
  }
125
117
  else {
@@ -132,8 +124,7 @@ export async function sparqlIngest(memberStream, config, sparqlWriter) {
132
124
  }
133
125
  function verifyTransaction(stores, transactionIdPath, transactionId) {
134
126
  for (const store of stores) {
135
- // Get all transaction IDs
136
- const tIds = store.getObjects(null, transactionIdPath, null);
127
+ const tIds = getObjects(store, null, df.namedNode(transactionIdPath), null);
137
128
  for (const tid of tIds) {
138
129
  if (!tid.equals(transactionId)) {
139
130
  throw new Error(`[sparqlIngest] Received non-matching transaction ID ${transactionId.value} `
@@ -153,34 +144,31 @@ function getNamedGraphIfAny(memberIRI, memberIsGraph, targetNamedGraph) {
153
144
  return ng;
154
145
  }
155
146
  function createTransactionQueries(transactionMembers, config) {
156
- console.log(`[sparqlIngest] Creating multi-operation SPARQL UPDATE query for ${transactionMembers.length}`
147
+ const logger = getLoggerFor("createTransactionQueries");
148
+ logger.info(`Creating multi-operation SPARQL UPDATE query for ${transactionMembers.length}`
157
149
  + ` members of transaction ${transactionMembers[0].transactionId}`);
158
- // This is a transaction query, we need to deal with possibly multiple types of queries
159
- const createStore = new Store();
160
- const updateStore = new Store();
161
- const deleteStore = new Store();
150
+ const createStore = RdfStore.createDefault();
151
+ const updateStore = RdfStore.createDefault();
152
+ const deleteStore = RdfStore.createDefault();
162
153
  const deleteMembers = [];
163
154
  const transactionQueryBuilder = [];
164
155
  for (const tsm of transactionMembers) {
165
- const ctv = tsm.store.getQuads(null, config.changeSemantics.changeTypePath, null, null)[0];
166
- // Remove change type quad from store
156
+ const ctv = tsm.store.getQuads(null, df.namedNode(config.changeSemantics.changeTypePath))[0];
167
157
  tsm.store.removeQuad(ctv);
168
158
  if (ctv.object.value === config.changeSemantics.createValue) {
169
- createStore.addQuads(tsm.store.getQuads(null, null, null, null));
159
+ tsm.store.getQuads(null, null, null, null).forEach(q => createStore.addQuad(q));
170
160
  }
171
161
  else if (ctv.object.value === config.changeSemantics.updateValue) {
172
- updateStore.addQuads(tsm.store.getQuads(null, null, null, null));
162
+ tsm.store.getQuads(null, null, null, null).forEach(q => updateStore.addQuad(q));
173
163
  }
174
164
  else if (ctv.object.value === config.changeSemantics.deleteValue) {
175
- deleteStore.addQuads(tsm.store.getQuads(null, null, null, null));
165
+ tsm.store.getQuads(null, null, null, null).forEach(q => deleteStore.addQuad(q));
176
166
  deleteMembers.push(tsm.memberId);
177
167
  }
178
168
  else {
179
169
  throw new Error(`[sparqlIngest] Unrecognized change type value: ${ctv.object.value}`);
180
170
  }
181
171
  }
182
- // TODO: Handle case of members as Named Graphs
183
- // Build multi-operation SPARQL query
184
172
  if (createStore.size > 0) {
185
173
  transactionQueryBuilder.push(CREATE(createStore, config.targetNamedGraph));
186
174
  }
package/lib/SPARQLQueries.d.ts ADDED
@@ -0,0 +1,4 @@
1
+ import { RdfStore } from "rdf-stores";
2
+ export declare const CREATE: (store: RdfStore, namedGraph?: string, multipleNamedGraphs?: boolean) => string;
3
+ export declare const UPDATE: (store: RdfStore, namedGraph?: string, multipleNamedGraphs?: boolean) => string;
4
+ export declare const DELETE: (store: RdfStore, memberIRIs: string[], memberShapes?: string[], namedGraph?: string, multipleNamedGraphs?: boolean) => string;
package/lib/SPARQLQueries.js CHANGED
@@ -1,38 +1,51 @@
1
1
  import { RDF, SHACL } from "@treecg/types";
2
- import { Writer as N3Writer, Store, Parser } from "n3";
2
+ import { Writer as N3Writer, Parser } from "n3";
3
+ import { RdfStore } from "rdf-stores";
4
+ import { DataFactory } from "rdf-data-factory";
5
+ import { getObjects, getSubjects, splitStore } from "./Utils.js";
6
+ const df = new DataFactory();
3
7
  export const CREATE = (store, namedGraph, multipleNamedGraphs) => {
4
- // TODO: Handle case of multiple members being Named Graphs
5
- const content = new N3Writer().quadsToString(store.getQuads(null, null, null, null));
8
+ const stores = splitStore(store, 500);
6
9
  return `
7
- INSERT DATA {
8
- ${namedGraph ? `GRAPH <${namedGraph}> {${content}}` : `${content}`}
9
- }
10
+ ${stores.map((subStore, i) => {
11
+ return `
12
+ ${namedGraph ? `WITH <${namedGraph}>` : ""}
13
+ INSERT DATA {
14
+ ${new N3Writer().quadsToString(subStore.getQuads())}
15
+ }
16
+ ${i === stores.length - 1 ? "" : ";"}
17
+ `;
18
+ }).join("\n")}
10
19
  `;
11
20
  };
12
21
  export const UPDATE = (store, namedGraph, multipleNamedGraphs) => {
13
- // TODO: Handle case of multiple members being Named Graphs
14
- const formattedQuery = formatDeleteQuery(store);
15
- const content = new N3Writer().quadsToString(store.getQuads(null, null, null, null));
22
+ const formattedQuery = formatQuery(store);
23
+ const stores = splitStore(store, 500);
16
24
  return `
17
25
  ${namedGraph ? `WITH <${namedGraph}>` : ""}
18
26
  DELETE {
19
27
  ${formattedQuery[0]}
20
28
  }
21
- INSERT {
22
- ${content}
23
- }
24
29
  WHERE {
25
30
  ${formattedQuery[0]}
26
- }
31
+ };
32
+ ${stores.map((subStore, i) => {
33
+ return `
34
+ ${namedGraph ? `WITH <${namedGraph}>` : ""}
35
+ INSERT DATA {
36
+ ${new N3Writer().quadsToString(subStore.getQuads())}
37
+ }
38
+ ${i === stores.length - 1 ? "" : ";"}
39
+ `;
40
+ }).join("\n")}
27
41
  `;
28
42
  };
29
43
  export const DELETE = (store, memberIRIs, memberShapes, namedGraph, multipleNamedGraphs) => {
30
- // TODO: Handle case of multiple members being Named Graphs
31
44
  const deleteBuilder = [];
32
45
  const whereBuilder = [];
33
46
  let indexStart = 0;
34
47
  for (const memberIRI of memberIRIs) {
35
- const formatted = formatDeleteQuery(store, memberIRI, memberShapes, indexStart);
48
+ const formatted = formatQuery(store, memberIRI, memberShapes, indexStart);
36
49
  deleteBuilder.push(formatted.length > 1 ? formatted[1] : formatted[0]);
37
50
  whereBuilder.push(formatted[0]);
38
51
  indexStart++;
@@ -46,29 +59,24 @@ export const DELETE = (store, memberIRIs, memberShapes, namedGraph, multipleName
46
59
  }
47
60
  `;
48
61
  };
49
- function formatDeleteQuery(memberStore, memberIRI, memberShapes, indexStart = 0) {
62
+ function formatQuery(memberStore, memberIRI, memberShapes, indexStart = 0) {
50
63
  const subjectSet = new Set();
51
64
  const queryBuilder = [];
52
65
  const formattedQueries = [];
53
66
  let i = indexStart;
54
- // Check if one or more member shapes were given.
55
- // If not, we assume that all properties of the member are present
56
- // and we use them to define its DELETE query pattern.
57
67
  if (!memberShapes || memberShapes.length === 0) {
58
- // Iterate over every BGP of the member to define a deletion pattern
59
- for (const quad of memberStore.getQuads(null, null, null, null)) {
68
+ for (const quad of memberStore.getQuads()) {
60
69
  if (!subjectSet.has(quad.subject.value)) {
61
- // Make sure every subject is processed only once
62
70
  subjectSet.add(quad.subject.value);
63
71
  if (quad.subject.termType === "NamedNode") {
64
- // Define a pattern that covers every property and value of named nodes
65
72
  queryBuilder.push(`<${quad.subject.value}> ?p_${i} ?o_${i}.`);
66
73
  }
67
74
  else if (quad.subject.termType === "BlankNode") {
68
- // Define a pattern that covers the referencing BGP and every property and value of blank nodes
69
- const bnQ = memberStore.getQuads(null, null, quad.subject, null)[0];
70
- queryBuilder.push(`<${bnQ.subject.value}> <${bnQ.predicate.value}> ?bn_${i}.`);
71
- queryBuilder.push(`?bn_${i} ?p_${i} ?o${i}.`);
75
+ queryBuilder.push(`?bn_${i} <${quad.predicate.value}> ${quad.object.termType === "Literal" ? `"${quad.object.value}"^^<${quad.object.datatype.value}>`
76
+ : quad.object.termType === "BlankNode" ? `?bn_ref_${i}`
77
+ : `<${quad.object.value}>`}.`);
78
+ queryBuilder.push(`?bn_${i} ?p_${i} ?o_${i}.`);
79
+ queryBuilder.push(`?s_ref_${i} ?p_ref_${i} ?bn_${i}.`);
72
80
  }
73
81
  i++;
74
82
  }
@@ -76,25 +84,20 @@ function formatDeleteQuery(memberStore, memberIRI, memberShapes, indexStart = 0)
76
84
  formattedQueries.push(queryBuilder.join("\n"));
77
85
  }
78
86
  else {
79
- // Create a shape index per target class
80
87
  const shapeIndex = new Map();
81
88
  memberShapes.forEach(msh => {
82
- const shapeStore = new Store(new Parser().parse(msh));
89
+ const shapeStore = RdfStore.createDefault();
90
+ new Parser().parse(msh).forEach(quad => shapeStore.addQuad(quad));
83
91
  shapeIndex.set(extractMainTargetClass(shapeStore).value, shapeStore);
84
92
  });
85
- // Add basic DELETE query pattern for this member
86
93
  queryBuilder.push(`<${memberIRI}> ?p_${i} ?o_${i}.`);
87
- // See if the member has a defined rdf:type so that we create a query pattern
88
- // for a specific shape, based on the sh:targetClass.
89
- // Otherwise we have to include all shapes in the query pattern because we don't know
90
- // exactly which is the shape of the received member.
91
- const memberType = memberStore.getObjects(memberIRI, RDF.type, null)[0];
94
+ const memberType = getObjects(memberStore, df.namedNode(memberIRI), RDF.terms.type)[0];
92
95
  if (memberType) {
93
96
  i++;
94
97
  const mshStore = shapeIndex.get(memberType.value);
95
- const propShapes = mshStore.getObjects(null, SHACL.property, null);
98
+ const propShapes = getObjects(mshStore, null, SHACL.terms.property, null);
96
99
  for (const propSh of propShapes) {
97
- const pred = mshStore.getObjects(propSh, SHACL.path, null)[0];
100
+ const pred = getObjects(mshStore, propSh, SHACL.terms.path, null)[0];
98
101
  queryBuilder.push(`<${memberIRI}> <${pred.value}> ?subEnt_${i}.`);
99
102
  queryBuilder.push(`?subEnt_${i} ?p_${i} ?o_${i}.`);
100
103
  i++;
@@ -102,16 +105,14 @@ function formatDeleteQuery(memberStore, memberIRI, memberShapes, indexStart = 0)
102
105
  formattedQueries.push(queryBuilder.join("\n"));
103
106
  }
104
107
  else {
105
- // We have to define a different but related query pattern for the delete clause without OPTIONAL
106
108
  const deleteQueryBuilder = [];
107
109
  deleteQueryBuilder.push(`<${memberIRI}> ?p_${i} ?o_${i}.`);
108
110
  i++;
109
- // Iterate over every declared member shape
110
111
  shapeIndex.forEach(mshStore => {
111
- const propShapes = mshStore.getObjects(null, SHACL.property, null);
112
+ const propShapes = getObjects(mshStore, null, SHACL.terms.property, null);
112
113
  queryBuilder.push(" OPTIONAL { ");
113
114
  for (const propSh of propShapes) {
114
- const pred = mshStore.getObjects(propSh, SHACL.path, null)[0];
115
+ const pred = getObjects(mshStore, propSh, SHACL.terms.path, null)[0];
115
116
  queryBuilder.push(`<${memberIRI}> <${pred.value}> ?subEnt_${i}.`);
116
117
  deleteQueryBuilder.push(`<${memberIRI}> <${pred.value}> ?subEnt_${i}.`);
117
118
  queryBuilder.push(`?subEnt_${i} ?p_${i} ?o_${i}.`);
@@ -126,16 +127,12 @@ function formatDeleteQuery(memberStore, memberIRI, memberShapes, indexStart = 0)
126
127
  }
127
128
  return formattedQueries;
128
129
  }
129
- // Find the main target class of a give Shape Graph.
130
- // We determine this by assuming that the main node shape
131
- // is not referenced by any other shape description.
132
- // If more than one is found an exception is thrown.
133
130
  function extractMainTargetClass(store) {
134
- const nodeShapes = store.getSubjects(RDF.type, SHACL.NodeShape, null);
131
+ const nodeShapes = getSubjects(store, RDF.terms.type, SHACL.terms.NodeShape, null);
135
132
  let mainNodeShape = null;
136
133
  if (nodeShapes && nodeShapes.length > 0) {
137
134
  for (const ns of nodeShapes) {
138
- const isNotReferenced = store.getSubjects(null, ns, null).length === 0;
135
+ const isNotReferenced = getSubjects(store, null, ns, null).length === 0;
139
136
  if (isNotReferenced) {
140
137
  if (!mainNodeShape) {
141
138
  mainNodeShape = ns;
@@ -147,7 +144,7 @@ function extractMainTargetClass(store) {
147
144
  }
148
145
  }
149
146
  if (mainNodeShape) {
150
- const tcq = store.getObjects(mainNodeShape, SHACL.targetClass, null)[0];
147
+ const tcq = getObjects(store, mainNodeShape, SHACL.terms.targetClass, null)[0];
151
148
  if (tcq) {
152
149
  return tcq;
153
150
  }
package/lib/Utils.d.ts ADDED
@@ -0,0 +1,7 @@
1
+ import { RdfStore } from "rdf-stores";
2
+ import type { Term, Quad_Subject, Quad_Object } from "@rdfjs/types";
3
+ export declare function getSubjects(store: RdfStore, predicate: Term | null, object: Term | null, graph?: Term | null): Quad_Subject[];
4
+ export declare function getObjects(store: RdfStore, subject: Term | null, predicate: Term | null, graph?: Term | null): Quad_Object[];
5
+ export declare function splitStore(store: RdfStore, threshold: number): RdfStore[];
6
+ export declare function sanitizeQuads(store: RdfStore): void;
7
+ export declare function doSPARQLRequest(query: string, url: string): Promise<void>;
package/lib/Utils.js CHANGED
@@ -1,27 +1,84 @@
1
1
  import { XSD } from "@treecg/types";
2
- import { DataFactory as DF } from "n3";
2
+ import { DataFactory } from "rdf-data-factory";
3
+ import { RdfStore } from "rdf-stores";
4
+ import { getLoggerFor } from "./LogUtil.js";
5
+ const df = new DataFactory();
6
+ export function getSubjects(store, predicate, object, graph) {
7
+ return store.getQuads(null, predicate, object, graph).map((quad) => {
8
+ return quad.subject;
9
+ });
10
+ }
11
+ export function getObjects(store, subject, predicate, graph) {
12
+ return store.getQuads(subject, predicate, null, graph).map((quad) => {
13
+ return quad.object;
14
+ });
15
+ }
16
+ export function splitStore(store, threshold) {
17
+ const stores = [];
18
+ if (store.size < threshold) {
19
+ stores.push(store);
20
+ }
21
+ else {
22
+ const quads = store.getQuads();
23
+ const bnSet = new Set();
24
+ let subStore = RdfStore.createDefault();
25
+ for (let i = 0; i < quads.length; i++) {
26
+ if (bnSet.has(`${quads[i].subject.value}${quads[i].predicate.value}${quads[i].object.value}${quads[i].graph.value}`)) {
27
+ continue;
28
+ }
29
+ if (subStore.size >= threshold) {
30
+ stores.push(subStore);
31
+ subStore = RdfStore.createDefault();
32
+ }
33
+ if (quads[i].subject.termType === "BlankNode") {
34
+ const subjectQuads = store.getQuads(quads[i].subject);
35
+ const objectQuads = store.getQuads(null, null, quads[i].subject);
36
+ [...subjectQuads, ...objectQuads].forEach((q) => {
37
+ subStore.addQuad(q);
38
+ bnSet.add(`${q.subject.value}${q.predicate.value}${q.object.value}${q.graph.value}`);
39
+ });
40
+ }
41
+ if (quads[i].object.termType === "BlankNode") {
42
+ const subjectQuads = store.getQuads(quads[i].object);
43
+ const objectQuads = store.getQuads(null, null, quads[i].object);
44
+ [...subjectQuads, ...objectQuads].forEach((q) => {
45
+ subStore.addQuad(q);
46
+ bnSet.add(`${q.subject.value}${q.predicate.value}${q.object.value}${q.graph.value}`);
47
+ });
48
+ }
49
+ subStore.addQuad(quads[i]);
50
+ }
51
+ stores.push(subStore);
52
+ }
53
+ return stores;
54
+ }
3
55
  export function sanitizeQuads(store) {
4
- for (const q of store.getQuads(null, null, null, null)) {
5
- // There is an issue with triples like <a> <b> +30.
6
- // Virtuoso doesn't accept the implicit integer type including the + sign.
56
+ for (const q of store.getQuads()) {
7
57
  if (q.object.termType === "Literal" && q.object.datatype.value === XSD.integer) {
8
58
  if (/\+\d+/.test(q.object.value) && q.object.value.startsWith("+")) {
9
59
  store.removeQuad(q);
10
- store.addQuad(q.subject, q.predicate, DF.literal(q.object.value.substring(1), DF.namedNode(XSD.integer)), q.graph);
60
+ store.addQuad(df.quad(q.subject, q.predicate, df.literal(q.object.value.substring(1), df.namedNode(XSD.integer)), q.graph));
11
61
  }
12
62
  }
13
63
  }
14
64
  }
15
65
  export async function doSPARQLRequest(query, url) {
16
- const res = await fetch(url, {
17
- method: "POST",
18
- headers: {
19
- 'Content-Type': 'application/x-www-form-urlencoded; charset=UTF-8',
20
- },
21
- body: `update=${fixedEncodeURIComponent(query)}`
22
- });
23
- if (!res.ok) {
24
- throw new Error(`HTTP request failed with code ${res.status} and message: \n${await res.text()}`);
66
+ const logger = getLoggerFor("doSPARQLRequest");
67
+ try {
68
+ const res = await fetch(url, {
69
+ method: "POST",
70
+ headers: {
71
+ 'Content-Type': 'application/x-www-form-urlencoded; charset=UTF-8',
72
+ },
73
+ body: `update=${fixedEncodeURIComponent(query)}`
74
+ });
75
+ if (!res.ok) {
76
+ throw new Error(`HTTP request failed with code ${res.status} and message: \n${await res.text()}`);
77
+ }
78
+ }
79
+ catch (err) {
80
+ logger.error(`Error while executing SPARQL request: ${err.message}`);
81
+ throw err;
25
82
  }
26
83
  }
27
84
  function fixedEncodeURIComponent(str) {
package/lib/tsconfig.tsbuildinfo CHANGED
@@ -1 +1 @@
1
- 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package/package.json CHANGED
@@ -1,14 +1,14 @@
1
1
  {
2
2
  "name": "@rdfc/sparql-ingest-processor-ts",
3
- "version": "0.3.0",
3
+ "version": "0.4.1",
4
4
  "description": "SPARQL Update function to be within RDF-Connect pipelines",
5
5
  "author": "Julián Rojas",
6
6
  "type": "module",
7
7
  "scripts": {
8
- "build": "tsc && tsc-alias",
8
+ "build": "tspc && tsc-alias",
9
9
  "prepublishOnly": "npm run build",
10
- "test": "bun test",
11
- "watch": "tsc -w"
10
+ "test": "vitest run --coverage --coverage.include lib",
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+ "prepare": "husky"
12
12
  },
13
13
  "files": [
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14
  "lib/**/*",
@@ -25,18 +25,27 @@
25
25
  },
26
26
  "dependencies": {
27
27
  "@treecg/types": "^0.4.6",
28
- "n3": "^1.17.4"
28
+ "n3": "^1.26.0",
29
+ "rdf-data-factory": "^2.0.2",
30
+ "rdf-stores": "^2.1.1",
31
+ "winston": "^3.17.0"
29
32
  },
30
33
  "devDependencies": {
31
- "@jest/globals": "^29.7.0",
32
- "@rdfc/js-runner": "^0.2.1",
33
- "@rdfjs/types": "^1.1.0",
34
- "@types/bun": "latest",
35
- "@types/n3": "^1.16.4",
36
- "memory-level": "^1.0.0",
37
- "quadstore": "^13.1.1",
38
- "quadstore-comunica": "^4.3.1",
39
- "tsc-alias": "^1.8.10",
40
- "typescript": "^5.5.2"
34
+ "@comunica/query-sparql": "^4.3.0",
35
+ "@rdfc/js-runner": "^1.0.0",
36
+ "@rdfjs/types": "^2.0.1",
37
+ "@types/n3": "^1.26.0",
38
+ "@types/node": "^24.0.13",
39
+ "@typescript-eslint/eslint-plugin": "^8.37.0",
40
+ "@typescript-eslint/parser": "^8.37.0",
41
+ "@vitest/coverage-v8": "^3.2.4",
42
+ "eslint": "^9.31.0",
43
+ "eslint-config-prettier": "^10.1.5",
44
+ "husky": "^9.1.7",
45
+ "ts-patch": "^3.3.0",
46
+ "tsc-alias": "^1.8.16",
47
+ "typescript": "^5.8.3",
48
+ "vite-tsconfig-paths": "^5.1.4",
49
+ "vitest": "^3.2.4"
41
50
  }
42
- }
51
+ }
package/processors.ttl CHANGED
@@ -45,7 +45,6 @@ js:SPARQLIngest a js:JsProcess;
45
45
  sh:path js:sparqlWriter;
46
46
  sh:name "sparqlWriter";
47
47
  sh:class :WriterChannel;
48
- sh:minCount 1;
49
48
  sh:maxCount 1;
50
49
  ].
51
50