@rcsb/rcsb-statistics 0.3.7 → 0.3.8

package/build/static/js/637.2a795f71.chunk.js

@@ -1 +0,0 @@
-"use strict";(self.webpackChunk_rcsb_rcsb_statistics=self.webpackChunk_rcsb_rcsb_statistics||[]).push([[637],{637:(e,t,r)=>{r.d(t,{F3:()=>u,Tb:()=>c,_1:()=>l});var a=r(8422),i=r(8132),n=r(7231),o=r(3444);const s=[{key:"overall-structures",title:"Overall",description:"Overall Growth of Released Structures Per Year",stats_notes:"This chart shows the growth in the number of structures released annually in the PDB over time.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}}]},facets:[{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:1}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:1},returnType:n.ReturnType.Entry}},{key:"overall-small-molecules",title:"by Small Molecules Only",description:"Small Molecule-only Structures Released Per Year",stats_notes:"This chart tracks the growth of structures that exclusively contain small molecules released annually in the PDB.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.selected_polymer_entity_types",operator:"exact_match",value:"Small Molecule (only)"}}]},facets:[{name:"rcsb_accession_info.initial_release_date",aggregation_type:"date_histogram",attribute:"rcsb_accession_info.initial_release_date",interval:"year"}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbChemCompInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:1},returnType:n.ReturnType.MolDefinition}},{key:"experimental-method",title:"Growth",description:"Overall Growth By Experimental Method",stats_notes:"This chart visualizes the growth in PDB entries categorized by different experimental methods over time.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.experimental_method",operator:"exact_match"}}]},facets:[{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:"date_histogram",attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:1,facets:[{name:`FACET/${i.e.Exptl.Method.path}`,aggregation_type:n.AggregationType.Terms,attribute:"rcsb_entry_info.experimental_method",min_interval_population:1}]}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:1},secondDim:{name:`FACET/${i.e.Exptl.Method.path}`,aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbEntryInfo.ExperimentalMethod.path,min_interval_population:1},returnType:n.ReturnType.Entry}},{key:"molecular-composition",title:"by Molecular Composition",description:"PDB Data Growth by Molecular Composition",stats_notes:"This chart highlights the growth of PDB entries based on their molecular composition.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.selected_polymer_entity_types",operator:"terms"}}]},facets:[{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0,facets:[{name:`FACET/${i.e.Exptl.Method.path}`,aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbEntryInfo.SelectedPolymerEntityTypes.path}]}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0},secondDim:{name:`FACET/${i.e.Exptl.Method.path}`,aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbEntryInfo.SelectedPolymerEntityTypes.path},returnType:n.ReturnType.Entry}},{key:"assembly-symmetry",title:"by Assembly Symmetry",description:"PDB Data Growth by Assembly Symmetry",stats_notes:"This chart shows the growth of PDB entries based on their global assembly symmetry classifications.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_struct_symmetry.type",operator:"terms"}}]},facets:[{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0,facets:[{name:`FACET/${i.e.RcsbStructSymmetry.Kind.enum["Global Symmetry"]}`,aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbStructSymmetry.Type.path}]}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0},secondDim:{name:`FACET/${i.e.RcsbStructSymmetry.Kind.enum["Global Symmetry"]}`,aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbStructSymmetry.Type.path},returnType:n.ReturnType.Entry}},{key:"number-of-domains",title:"by Number of Domains",description:"PDB Data Growth by Number of Unique Domains",stats_notes:"This chart visualizes the growth of structures by the number of unique domains.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_polymer_entity_group_membership.aggregation_method",operator:"exact_match",value:"matching_uniprot_accession"}}]},facets:[{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0,facets:[{name:"Unique UniProtKB Entries",aggregation_type:n.AggregationType.Terms,attribute:"rcsb_polymer_entity_group_membership.group_id"}]}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0},secondDim:{filter:{type:n.Type.Terminal,service:n.Service.Text,parameters:{attribute:i.e.RcsbPolymerEntityGroupMembership.AggregationMethod.path,operator:n.Operator.ExactMatch,value:i.e.RcsbPolymerEntityGroupMembership.AggregationMethod.enum.sequence_identity}},facets:[{name:"Similarity Cutoff",aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbPolymerEntityGroupMembership.SimilarityCutoff.path,min_interval_population:1,facets:[{name:"Unique Protein Sequences",aggregation_type:n.AggregationType.Cardinality,attribute:i.e.RcsbPolymerEntityGroupMembership.GroupId.path}]}]},returnType:n.ReturnType.Entry}},{key:"unique-protein-sequences",title:"by Unique Protein Sequences",description:"PDB Data Growth by Unique Protein Sequences",stats_notes:"This chart illustrates the growth of PDB structures based on the number of unique protein sequences.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_polymer_entity_group_membership.aggregation_method",operator:"exact_match",value:"matching_uniprot_accession"}}]},facets:[{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0,facets:[{name:"Unique UniProtKB Entries",aggregation_type:n.AggregationType.Terms,attribute:"rcsb_polymer_entity_group_membership.group_id"}]}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0},secondDim:{filter:{type:n.Type.Terminal,service:n.Service.Text,parameters:{attribute:i.e.RcsbPolymerEntityGroupMembership.AggregationMethod.path,operator:n.Operator.ExactMatch,value:n.AggregationMethod.MatchingUniprotAccession}},facets:[{name:"Unique UniProtKB Entries",aggregation_type:n.AggregationType.Cardinality,attribute:i.e.RcsbPolymerEntityGroupMembership.GroupId.path}]},returnType:n.ReturnType.Entry}},{key:"matching-uniprot",title:"by UniProtKB Entries with Known 3D Structure",description:"PDB Data Growth by UniProtKB Entries with Known 3D Structure",stats_notes:"This chart shows the total number of unique UniProtKB entries in PDB structures released within each year. <br /> Note: The number of unique UniProtKB entries in the statistics table is linked to the group search result page. There is a default precision threshold in calculating the numbers for performance balance. So the statistics count may have a slight discrepancy compared to the actual non-redundant group search result when the result count approaches or goes above 10,000. The group search result page provides an accurate count. The statistics page provides the trend.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_polymer_entity_group_membership.aggregation_method",operator:"exact_match",value:"matching_uniprot_accession"}}]},facets:[{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0,facets:[{name:"Unique UniProtKB Entries",aggregation_type:n.AggregationType.Terms,attribute:"rcsb_polymer_entity_group_membership.group_id"}]}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0},secondDim:{filter:{type:n.Type.Terminal,service:n.Service.Text,parameters:{attribute:i.e.RcsbPolymerEntityGroupMembership.AggregationMethod.path,operator:n.Operator.ExactMatch,value:n.AggregationMethod.MatchingUniprotAccession}},facets:[{name:"Unique UniProtKB Entries",aggregation_type:n.AggregationType.Cardinality,attribute:i.e.RcsbPolymerEntityGroupMembership.GroupId.path}]},returnType:n.ReturnType.Entry}},{key:"distribution-resolution",title:"by Resolution",description:"PDB Data Distribution by Resolution",header_label:"Resolution (Å)",stats_notes:"Distribution by structure resolution. Data shown include structures solved by X-ray crystallography or electron microscopy.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.resolution_combined",operator:"range"}}]},facets:[],query:{firstDim:{name:"Resolution Combined",aggregation_type:n.AggregationType.Range,attribute:i.e.RcsbEntryInfo.ResolutionCombined.path,ranges:(0,a.Y$)(1,.2,4.6)},returnType:n.ReturnType.Entry}},{key:"distribution-r-free",title:"by R-free",description:"PDB Data Distribution by R-free",header_label:"R-free (%)",stats_notes:"Distribution of PDB structures by R-free. Data shown include structures solved by X-ray crystallography or electron microscopy.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"refine.ls_R_factor_R_free",operator:"range"}}]},facets:[],query:{firstDim:{name:"R-free",aggregation_type:n.AggregationType.Range,attribute:i.e.Refine.LsRFactorRFree.path,ranges:(0,a.Y$)(.14,.01,.32)},returnType:n.ReturnType.Entry}},{key:"distribution-molecular-weight-structure",title:"by Molecular Weight (Structure)",description:"PDB Data Distribution by Molecular Weight (Structure)",header_label:"Molecular Weight (Daltons)",stats_notes:"All macromolecules, small molecules, and ions are included, except for water molecules. Molecular weight is calculated for all atoms.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.molecular_weight",operator:"range"}}]},facets:[],query:{firstDim:{name:"Molecular Weight",aggregation_type:n.AggregationType.Range,attribute:i.e.RcsbEntryInfo.MolecularWeight.path,ranges:(0,a.Y$)(20,20,380)},returnType:n.ReturnType.Entry}},{key:"distribution-molecular-weight-entity",title:"by Molecular Weight (Structure)",description:"PDB Data Distribution by Molecular Weight (Entity)",header_label:"Molecular Weight (Daltons)",stats_notes:"All macromolecules, small molecules, and ions are included, except for water molecules. Molecular weight is calculated for all atoms.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.molecular_weight",operator:"range"}}]},facets:[],query:{firstDim:{name:"Molecular Weight",aggregation_type:n.AggregationType.Range,attribute:i.e.RcsbEntryInfo.MolecularWeight.path,ranges:(0,a.Y$)(20,20,380)},returnType:n.ReturnType.Entry}},{key:"distribution-atom-count",title:"by Atom Count",description:"PDB Data Distribution by Atom Count",header_label:"Atom Count Range",stats_notes:"Distribution of released structures by the number of observed atoms excluding atoms in water molecules.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.deposited_atom_count",operator:"range"}}]},facets:[],query:{firstDim:{name:"Atom Count",aggregation_type:n.AggregationType.Range,attribute:i.e.RcsbEntryInfo.DepositedAtomCount.path,ranges:(0,a.Y$)(1e3,1e3,19e3)},returnType:n.ReturnType.Entry}},{key:"distribution-residue-count",title:"by Residue Count",description:"PDB Data Distribution by Residue Count",header_label:"Residue Count Range",stats_notes:"Distribution of released structures by the number of residues in macromolecules.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.deposited_polymer_monomer_count",operator:"range"}}]},facets:[],query:{firstDim:{name:"Residue Count",aggregation_type:n.AggregationType.Range,attribute:i.e.RcsbEntryInfo.DepositedPolymerMonomerCount.path,ranges:(0,a.Y$)(100,100,1900)},returnType:n.ReturnType.Entry}},{key:"distribution-source-organism",title:"by Natural Source Organism",description:"PDB Data Distribution by Natural Source Organism",header_label:"Natural Source Organism",stats_notes:"Source organism for these structures is from a natural, non-modified source.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.ncbi_scientific_name",operator:"exact_match"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.source_type",operator:"exact_match",value:"natural"}}]},facets:[{name:"rcsb_entity_source_organism.ncbi_scientific_name",aggregation_type:n.AggregationType.Terms,attribute:"rcsb_entity_source_organism.ncbi_scientific_name",filter:{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.source_type",operator:"exact_match",value:"natural"}},min_interval_population:1}],query:{firstDim:{name:"Source Type",aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbEntitySourceOrganism.SourceType.path,min_interval_population:1,facets:[{name:"Source 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classification.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.ncbi_scientific_name",operator:"exact_match"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.source_type",operator:"exact_match",value:"natural"}}]},facets:[{name:"rcsb_entity_source_organism.ncbi_scientific_name",aggregation_type:n.AggregationType.Terms,attribute:"rcsb_entity_source_organism.ncbi_scientific_name",filter:{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.source_type",operator:"exact_match",value:"natural"}},min_interval_population:1}],query:{firstDim:{name:"Taxonomy",aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbEntitySourceOrganism.NcbiParentScientificName.path,min_interval_population:1,max_num_intervals:20},returnType:n.ReturnType.PolymerEntity}},{key:"enzyme-classification-name",title:"by Enzyme Classification",description:"PDB Data 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Symmetry"],aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbStructSymmetry.Type.path,min_interval_population:1}]},returnType:n.ReturnType.Assembly}},{key:"scop-classification",title:"by SCOP Classification",description:"PDB Data Distribution by SCOP Classification",header_label:"SCOP Classification",stats_notes:"SCOP Classification",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.ncbi_scientific_name",operator:"exact_match"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.source_type",operator:"exact_match",value:"natural"}}]},facets:[{name:"rcsb_entity_source_organism.ncbi_scientific_name",aggregation_type:n.AggregationType.Terms,attribute:"rcsb_entity_source_organism.ncbi_scientific_name",filter:{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.source_type",operator:"exact_match",value:"natural"}},min_interval_population:1}],query:{firstDim:{filter:{type:n.Type.Terminal,service:n.Service.Text,parameters:{attribute:i.e.RcsbPolymerInstanceAnnotation.Type.path,operator:n.Operator.ExactMatch,value:"SCOP"}},facets:[{filter:{type:n.Type.Terminal,service:n.Service.Text,parameters:{attribute:i.e.RcsbPolymerInstanceAnnotation.AnnotationLineage.Depth.path,operator:n.Operator.Equals,value:1}},facets:[{name:"SCOP 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Entries",link:o.A.PDB_DATA_GROWTH("matching-uniprot")},{text:"Distribution by Resolution",link:o.A.PDB_DATA_DISTRIBUTION("distribution-resolution")},{text:"Distribution by R-free",link:o.A.PDB_DATA_DISTRIBUTION("distribution-r-free")},{text:"Distribution by Molecular Weight (Structure)",link:o.A.PDB_DATA_DISTRIBUTION("distribution-molecular-weight-structure")},{text:"Distribution by Molecular Weight (Entity)",link:o.A.PDB_DATA_DISTRIBUTION("distribution-molecular-weight-entity")},{text:"Distribution by Atom Count",link:o.A.PDB_DATA_DISTRIBUTION("distribution-atom-count")},{text:"Distribution by Residue Count",link:o.A.PDB_DATA_DISTRIBUTION("distribution-residue-count")},{text:"Distribution by Source Organism",link:o.A.PDB_DATA_DISTRIBUTION("distribution-source-organism")},{text:"Distribution by Taxonomy",link:o.A.PDB_DATA_DISTRIBUTION("taxonomy")},{text:"Distribution by Processing Software",link:o.A.PDB_DATA_DISTRIBUTION("distribution-software")},{text:"Distribution by Space 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