@rcsb/rcsb-statistics 0.3.44-dev.aipcb.4 → 0.3.44-dev.aipcb.5

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@rcsb/rcsb-statistics",
-  "version": "0.3.44-dev.aipcb.4",
+  "version": "0.3.44-dev.aipcb.5",
   "private": false,
   "files": [
     "build"

package/build/static/js/489.0b19498e.chunk.js

@@ -1 +0,0 @@
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Entry-level population filters may match different entities or reported values in that entry."),t.push("Each cohort selects up to ".concat(e.observations.limit," newest matching entries, ordered by initial release date descending and entry ID ascending. This is not a random or representative sample.")),Object.values(e.observations).includes("resolution")&&t.push("Resolution is the minimum positive reported combined resolution per entry, not an average or necessarily the value satisfying a resolution population filter. Entries without the required measurements are omitted, never assigned zero."),e.observations.size&&t.push("Bubble area is proportional to the recorded size metric. Its raw value and units are retained in the table and exports.")):o.dimensions[e.dimension].overlapping&&t.push("An entry may occur in more than one category. Bucket counts must not be summed as a unique entry total."),e.series.length>1&&"stacked"!==n.stacking&&t.push("Comparison cohorts may overlap; each is counted independently."),r||"sourceOrganism"!==e.dimension||t.push("Source organisms are those recorded for any matching entry; they are not expression hosts. All source types are included."),r||"releaseYear"!==e.dimension||t.push("Counts describe the current archive by initial release year, not historical archive snapshots. The current year is incomplete."),e.cumulative&&t.push("Cumulative values begin at the earliest year included by the filters."),"area"===e.chartType&&"stacked"!==n.stacking&&t.push("Area series use a zero baseline and are not stacked; overlapping cohorts are counted independently."),("logarithmic"===e.scale||r&&"logarithmic"===n.xScale)&&t.push("Zero values are omitted from the logarithmic chart; the table retains them."),"percent"===e.measure&&t.push("The denominator is every matching entry in that series, including entries missing the chart attribute."),"stacked"===n.stacking&&t.push("Stacked cohorts have disjoint entry populations. Stack totals describe only the included cohorts, not necessarily all matching archive entries."),["radar","polarArea"].includes(e.chartType)&&t.push("Radial values compare category magnitudes; they do not imply a complete, non-overlapping parts-of-whole partition."),["xMin","xMax","yMin","yMax"].some(e=>null!==n[e])&&t.push("Explicit axis bounds may hide values outside the visible chart. The table and exports retain all retrieved data."),t}e.exports={catalog:o,validateSchema:u,validateChartSpec:h,getChartPresentation:g,buildChartRequests:w,buildChartDrilldownRequest:function(e,t,r){var n;const a=h(e);m(a)&&c("Inspect observation points by their PDB entry identifier, not an aggregation bucket."),(!Number.isInteger(r)||r<0||r>=a.series.length)&&c("Select a valid chart series."),("string"!=typeof t||!t.trim()||t.length>300||/[\u0000-\u001f\u007f]/.test(t))&&c("Select a valid chart category.");const i=o.dimensions[a.dimension],s={attribute:i.attribute,operator:"exact_match",value:t};if("releaseYear"===a.dimension){(!/^\d{4}$/.test(t)||Number(t)<o.filters.releaseYear.minimum||Number(t)>o.filters.releaseYear.maximum)&&c("Select a valid release year.");const e="".concat(Number(t)+1,"-01-01");s.operator=a.cumulative?"less":"range",s.value=a.cumulative?e:{from:"".concat(t,"-01-01"),to:e,include_lower:!0,include_upper:!1}}else if("histogram"===i.aggregation){const e=Number(t);(!/^(?:0|[1-9]\d*)(?:\.\d+)?$/.test(t)||!Number.isFinite(e)||e<0||e>o.filters[a.dimension].maximum||Math.abs(e/a.interval-Math.round(e/a.interval))>1e-8)&&c("Select a valid numeric interval."),s.operator="range",s.value={from:e,to:Number((e+a.interval).toPrecision(12)),include_lower:!0,include_upper:!1}}return{return_type:"entry",query:{type:"group",logical_operator:"and",nodes:[...(null===(n=w(a)[r].query)||void 0===n?void 0:n.nodes)||[],{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:s}]}]},request_options:{results_content_type:["experimental"],paginate:{start:0,rows:25}}}},describeFilter:x,describeChart:function(e){return h(e),m(e)?"".concat(d(e.observations.y)," versus ").concat(d(e.observations.x)).concat(e.observations.size?"; bubble area: ".concat(d(e.observations.size)):"","; ").concat(e.chartType," chart; up to ").concat(e.observations.limit," newest entries per cohort."):"".concat(e.cumulative?"Cumulative ":"").concat("count"===e.measure?"PDB entry counts":"Percentage of matching PDB entries"," by ").concat(o.dimensions[e.dimension].label.toLowerCase(),"; ").concat(e.chartType," chart; ").concat(e.series.length," ").concat(1===e.series.length?"series":"comparison series",".")},chartWarnings:S,chartChanges:function(e,t){return e?(h(e),h(t),[...new Set([...Object.keys(e),...Object.keys(t)])].filter(r=>JSON.stringify(e[r])!==JSON.stringify(t[r])).flatMap(r=>{if("presentation"===r){const r=g(e),n=g(t),a={palette:"Color palette",legend:"Legend",grid:"Grid lines",lineStyle:"Line style",pointRadius:"Point radius",borderWidth:"Border width",barRadius:"Bar corner radius",doughnutCutout:"Doughnut cutout",colors:"Series colors",fillOpacity:"Fill opacity",pointStyle:"Point shape",lineDash:"Line pattern",barWidth:"Bar width",tickRotation:"Tick rotation",fontSize:"Font size",height:"Chart height",radialStartAngle:"Radial start angle",xScale:"X-axis scale",xMin:"X-axis minimum",xMax:"X-axis maximum",yMin:"Value-axis minimum",yMax:"Value-axis maximum",reverseX:"Reverse X axis",reverseY:"Reverse value axis",seriesTypes:"Series drawing types",stacking:"Stacking"},i=(e,t)=>"grid"===e?t?"shown":"hidden":"doughnutCutout"===e?"".concat(t,"%"):Array.isArray(t)?t.join(", ")||"automatic":null===t?"automatic":String(t);return Object.keys(n).filter(e=>JSON.stringify(r[e])!==JSON.stringify(n[e])).map(e=>"".concat(a[e],": ").concat(i(e,r[e])," → ").concat(i(e,n[e]),"."))}return"observations"===r?t.observations?"Measurements: ".concat(d(t.observations.x),", ").concat(d(t.observations.y)).concat(t.observations.size?"; size: ".concat(d(t.observations.size)):"","; up to ").concat(t.observations.limit," entries per cohort."):"Use entry-count aggregations.":"filters"===r?"Filters: ".concat(t.filters.length?t.filters.map(x).join("; "):"none","."):"series"===r?"Series: ".concat(t.series.map(e=>"".concat(e.label).concat(e.filters.length?" (".concat(e.filters.map(x).join("; "),")"):"")).join("; "),"."):"".concat(r,": ").concat(String(e[r])," → ").concat(String(t[r]))})):["Create a new chart."]},formatChartData:function(e,t){const r=h(e);m(r)&&c("Paired entry records are required for an observation chart."),Array.isArray(t)&&t.length===r.series.length||c("A response is required for every chart series.");const n=o.dimensions[r.dimension];let i=!1;const l=t.map((e,t)=>{var a;(!s(e)||!Number.isInteger(e.total_count)||e.total_count<0)&&c("The Search API did not return a valid entry count.");const l=null===(a=e.facets)||void 0===a||null===(a=a.find(e=>"chart"===e.name))||void 0===a?void 0:a.buckets;Array.isArray(l)||0===e.total_count||c("The Search API did not return the requested chart aggregation."),(l||[]).length>=1e3&&(i=!0);const u=new Map;return(l||[]).forEach(t=>{(!Number.isInteger(t.population)||t.population<0||t.population>e.total_count||!["string","number"].includes(typeof t.label)||String(t.label).length>300)&&c("The Search API returned an invalid chart bucket.");let a=String(t.label);if("releaseYear"===r.dimension){const e=a.match(/\d{4}/);e||c("The Search API returned an invalid release year."),a=e[0]}"histogram"===n.aggregation&&((!a.trim()||!Number.isFinite(Number(a))||Number(a)<0||Number(a)>o.filters[r.dimension].maximum||n.integer&&!Number.isInteger(Number(a)))&&c("The Search API returned an invalid numeric interval."),a=String(Number(Number(a).toPrecision(12))),Math.abs(Number(a)/r.interval-Math.round(Number(a)/r.interval))>1e-8&&c("The Search API returned a numeric interval outside the requested bin grid.")),u.has(a)&&c("The Search API returned duplicate chart buckets."),u.set(a,t.population)}),{label:r.series[t].label,total:e.total_count,values:u}});let u=[...new Set(l.flatMap(e=>[...e.values.keys()]))];const d=u.every(e=>Number.isFinite(Number(e)));if(u.sort((e,t)=>d?Number(e)-Number(t):e.localeCompare(t)),"releaseYear"===r.dimension&&u.length){const e=Number(u[0]),t=Number(u[u.length-1]);t-e>200&&c("The Search API returned an unsupported year range."),u=Array.from({length:t-e+1},(t,r)=>String(e+r))}if("histogram"===n.aggregation&&u.length){const e=Number(u[0]),t=Math.round((Number(u[u.length-1])-e)/r.interval)+1;t>1e3&&c("This histogram exceeds 1,000 bins. 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