@rcsb/rcsb-statistics 0.3.4 → 0.3.6

package/build/static/js/5.e991c0d2.chunk.js

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package/build/static/js/637.bc8389cb.chunk.js

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-"use strict";(self.webpackChunk_rcsb_rcsb_statistics=self.webpackChunk_rcsb_rcsb_statistics||[]).push([[637],{637:(e,t,r)=>{r.d(t,{F3:()=>p,Tb:()=>c,_1:()=>l});var a=r(8422),i=r(8132),n=r(7231),o=r(3444);const s=[{key:"overall-structures",title:"Overall",description:"Overall Growth of Released Structures Per Year",stats_notes:"This chart shows the growth in the number of structures released annually in the PDB over time.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}}]},facets:[{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:1}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:1},returnType:n.ReturnType.Entry}},{key:"overall-small-molecules",title:"by Small Molecules Only",description:"Small Molecule-only Structures Released Per Year",stats_notes:"This chart tracks the growth of structures that exclusively contain small molecules released annually in the PDB.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.selected_polymer_entity_types",operator:"exact_match",value:"Small Molecule (only)"}}]},facets:[{name:"rcsb_accession_info.initial_release_date",aggregation_type:"date_histogram",attribute:"rcsb_accession_info.initial_release_date",interval:"year"}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbChemCompInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:1},returnType:n.ReturnType.MolDefinition}},{key:"experimental-method",title:"Growth",description:"Overall Growth By Experimental Method",stats_notes:"This chart visualizes the growth in PDB entries categorized by different experimental methods over time.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.experimental_method",operator:"exact_match"}}]},facets:[{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:"date_histogram",attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:1,facets:[{name:`FACET/${i.e.Exptl.Method.path}`,aggregation_type:n.AggregationType.Terms,attribute:"rcsb_entry_info.experimental_method",min_interval_population:1}]}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:1},secondDim:{name:`FACET/${i.e.Exptl.Method.path}`,aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbEntryInfo.ExperimentalMethod.path,min_interval_population:1},returnType:n.ReturnType.Entry}},{key:"molecular-composition",title:"by Molecular Composition",description:"PDB Data Growth by Molecular Composition",stats_notes:"This chart highlights the growth of PDB entries based on their molecular composition.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.selected_polymer_entity_types",operator:"terms"}}]},facets:[{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0,facets:[{name:`FACET/${i.e.Exptl.Method.path}`,aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbEntryInfo.SelectedPolymerEntityTypes.path}]}],query:{firstDim:{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0},secondDim:{name:`FACET/${i.e.Exptl.Method.path}`,aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbEntryInfo.SelectedPolymerEntityTypes.path},returnType:n.ReturnType.Entry}},{key:"assembly-symmetry",title:"by 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domains.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_accession_info.initial_release_date",operator:"range"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_polymer_entity_group_membership.aggregation_method",operator:"exact_match",value:"matching_uniprot_accession"}}]},facets:[{name:`FACET/${i.e.RcsbAccessionInfo.InitialReleaseDate.path}`,aggregation_type:n.AggregationType.DateHistogram,attribute:i.e.RcsbAccessionInfo.InitialReleaseDate.path,interval:n.Interval.Year,min_interval_population:0,facets:[{name:"Unique UniProtKB 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Data shown include structures solved by X-ray crystallography or electron microscopy.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.resolution_combined",operator:"range"}}]},facets:u("rcsb_entry_info.resolution_combined",1,4.6,.2,!0),query:{firstDim:{name:"Resolution Combined",aggregation_type:n.AggregationType.Range,attribute:i.e.RcsbEntryInfo.ResolutionCombined.path,ranges:(0,a.Y$)(1,.2,4.6)},returnType:n.ReturnType.Entry}},{key:"distribution-r-free",title:"by R-free",description:"PDB Data Distribution by R-free",header_label:"R-free (%)",stats_notes:"Distribution of PDB structures by R-free. Data shown include structures solved by X-ray crystallography or electron microscopy.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"refine.ls_R_factor_R_free",operator:"range"}}]},facets:u("refine.ls_R_factor_R_free",.14,.32,.01,!0),query:{firstDim:{name:"R-free",aggregation_type:n.AggregationType.Range,attribute:i.e.Refine.LsRFactorRFree.path,ranges:(0,a.Y$)(.14,.01,.32)},returnType:n.ReturnType.Entry}},{key:"distribution-molecular-weight-structure",title:"by Molecular Weight (Structure)",description:"PDB Data Distribution by Molecular Weight (Structure)",header_label:"Molecular Weight (Daltons)",stats_notes:"All macromolecules, small molecules, and ions are included, except for water molecules. Molecular weight is calculated for all atoms.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.molecular_weight",operator:"range"}}]},facets:u("rcsb_entry_info.molecular_weight",20,380,20,!1),query:{firstDim:{name:"Molecular Weight",aggregation_type:n.AggregationType.Range,attribute:i.e.RcsbEntryInfo.MolecularWeight.path,ranges:(0,a.Y$)(20,20,380)},returnType:n.ReturnType.Entry}},{key:"distribution-atom-count",title:"by Atom Count",description:"PDB Data Distribution by Atom Count",header_label:"Atom Count Range",stats_notes:"Distribution of released structures by the number of observed atoms excluding atoms in water molecules.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entry_info.deposited_atom_count",operator:"range"}}]},facets:u("rcsb_entry_info.deposited_atom_count",1e3,19e3,1e3,!1),query:{firstDim:{name:"Atom 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classification.",ref_url:{type:"group",logical_operator:"and",nodes:[{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.ncbi_scientific_name",operator:"exact_match"}},{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.source_type",operator:"exact_match",value:"natural"}}]},facets:[{name:"rcsb_entity_source_organism.ncbi_scientific_name",aggregation_type:n.AggregationType.Terms,attribute:"rcsb_entity_source_organism.ncbi_scientific_name",filter:{type:"terminal",service:"text",parameters:{attribute:"rcsb_entity_source_organism.source_type",operator:"exact_match",value:"natural"}},min_interval_population:1}],query:{firstDim:{name:"Taxonomy",aggregation_type:n.AggregationType.Terms,attribute:i.e.RcsbEntitySourceOrganism.NcbiParentScientificName.path,min_interval_population:1,max_num_intervals:20},returnType:n.ReturnType.PolymerEntity}},{key:"enzyme-classification-name",title:"by Enzyme Classification",description:"PDB Data 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