@rcsb/rcsb-saguaro-app 6.3.7-dev-js-seqcoord.20 → 6.3.7-dev-js-seqcoord.21
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/app.js +1 -1
- package/build/constants.js +1 -1
- package/build/plot.js +1 -1
- package/build/worker.js +1 -1
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.d.ts +1 -1
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.d.ts +1 -1
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.d.ts +1 -1
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.d.ts +1 -1
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.d.ts +1 -1
- package/lib/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.d.ts +1 -1
- package/lib/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.d.ts +1 -1
- package/lib/RcsbCollectTools/DataCollectors/GroupMemberCollector.d.ts +1 -1
- package/lib/RcsbCollectTools/DataCollectors/GroupPropertyCollector.d.ts +1 -1
- package/lib/RcsbCollectTools/DataCollectors/InterfaceInstanceCollector.d.ts +1 -1
- package/lib/RcsbCollectTools/DataCollectors/MultipleEntityInstancesCollector.d.ts +1 -1
- package/lib/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.d.ts +2 -2
- package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.d.ts +1 -1
- package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.js +1 -1
- package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.js.map +1 -1
- package/lib/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.js +1 -1
- package/lib/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.js.map +1 -1
- package/lib/RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector.d.ts +2 -2
- package/lib/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.d.ts +1 -1
- package/lib/RcsbExport/FeatureType.d.ts +1 -1
- package/lib/RcsbExport/FeatureType.js +1 -1
- package/lib/RcsbExport/FeatureType.js.map +1 -1
- package/lib/RcsbFvExamples/ExternalDataProvider.js +1 -1
- package/lib/RcsbFvExamples/ExternalDataProvider.js.map +1 -1
- package/lib/RcsbFvExamples/GroupHistogram.js +1 -1
- package/lib/RcsbFvExamples/GroupHistogram.js.map +1 -1
- package/lib/RcsbFvExamples/InstanceSequenceFv.js +1 -1
- package/lib/RcsbFvExamples/InstanceSequenceFv.js.map +1 -1
- package/lib/RcsbFvExamples/SequenceIdentityGroupFv.js +1 -1
- package/lib/RcsbFvExamples/SequenceIdentityGroupFv.js.map +1 -1
- package/lib/RcsbFvExamples/UniprotGroupFv.js +2 -2
- package/lib/RcsbFvExamples/UniprotGroupFv.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.js +2 -2
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.d.ts +2 -2
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js +3 -3
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupBuilder.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder.d.ts +2 -2
- package/lib/RcsbFvWeb/RcsbFvBuilder.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.js +2 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.js +2 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js +2 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js +2 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js +2 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.d.ts +2 -2
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js +3 -3
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.d.ts +2 -2
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js +2 -2
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.d.ts +2 -2
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js +2 -2
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.js +2 -2
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface.d.ts +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvProteinSequence.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvProteinSequence.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprot.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprot.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotAlignment.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotAlignment.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotEntity.js +2 -2
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotEntity.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotInstance.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotInstance.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvWorkers/RcsbFvAlignmentCollectorQueue.d.ts +1 -1
- package/lib/RcsbGraphQL/RcsbClient.d.ts +2 -2
- package/lib/RcsbGraphQL/RcsbCoreQueryInterface.d.ts +1 -1
- package/lib/RcsbGraphQL/RcsbQueryAlignment.d.ts +2 -2
- package/lib/RcsbGraphQL/RcsbQueryAnnotations.d.ts +2 -2
- package/lib/RcsbGraphQL/RcsbQueryAssemblyInterfaces.d.ts +2 -2
- package/lib/RcsbGraphQL/RcsbQueryEntryInstances.d.ts +2 -2
- package/lib/RcsbGraphQL/RcsbQueryGroup.d.ts +2 -2
- package/lib/RcsbGraphQL/RcsbQueryInterfaceInstances.d.ts +2 -2
- package/lib/RcsbGraphQL/RcsbQueryMultipleEntityInstances.d.ts +2 -2
- package/lib/RcsbGraphQL/RcsbQueryMultipleEntriesProperties.d.ts +2 -2
- package/lib/RcsbGraphQL/RcsbQueryMultipleInstanceSequences.d.ts +2 -2
- package/lib/RcsbGroupWeb/RcsbGroupBuilder.d.ts +3 -3
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.d.ts +1 -1
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.js +1 -1
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.js.map +1 -1
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartTools.d.ts +2 -2
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbGroupChartComponent.d.ts +2 -2
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbStatsChartComponent.d.ts +3 -3
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupContent/RcsbGroupContentComponent.d.ts +2 -2
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupContent/RcsbGroupContentComponent.js +1 -1
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupContent/RcsbGroupContentComponent.js.map +1 -1
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupDisplay.d.ts +3 -3
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMemberItem.d.ts +2 -2
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMemberItem.js +2 -2
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMemberItem.js.map +1 -1
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.d.ts +2 -2
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.js +4 -4
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.js.map +1 -1
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.d.ts +3 -3
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.js +2 -2
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.js.map +1 -1
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/RcsbGroupSeacrhQueryComponent.d.ts +2 -2
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/SearchQueryContextManager.d.ts +3 -3
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools.js +1 -1
- package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools.js.map +1 -1
- package/lib/RcsbQueries/QueryCheck.js +1 -1
- package/lib/RcsbQueries/QueryCheck.js.map +1 -1
- package/lib/RcsbRequest/RcsbRequestClient.d.ts +2 -2
- package/lib/RcsbRequest/RcsbRequestClient.js +2 -2
- package/lib/RcsbRequest/RcsbRequestClient.js.map +1 -1
- package/lib/RcsbRequest/RcsbRequestContextManager.d.ts +5 -5
- package/lib/RcsbRequest/RcsbRequestContextManager.js +3 -3
- package/lib/RcsbRequest/RcsbRequestContextManager.js.map +1 -1
- package/lib/RcsbSeacrh/FacetStore/DepositionGroupFacetStore.d.ts +1 -1
- package/lib/RcsbSeacrh/FacetStore/DepositionGroupFacetStore.js +2 -2
- package/lib/RcsbSeacrh/FacetStore/DepositionGroupFacetStore.js.map +1 -1
- package/lib/RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore.d.ts +1 -1
- package/lib/RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore.js +2 -2
- package/lib/RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore.js.map +1 -1
- package/lib/RcsbSeacrh/FacetStore/FacetMemberInterface.d.ts +1 -1
- package/lib/RcsbSeacrh/FacetStore/FacetStoreInterface.d.ts +1 -1
- package/lib/RcsbSeacrh/FacetStore/SequenceGroupFacetStore.d.ts +1 -1
- package/lib/RcsbSeacrh/FacetStore/SequenceGroupFacetStore.js +2 -2
- package/lib/RcsbSeacrh/FacetStore/SequenceGroupFacetStore.js.map +1 -1
- package/lib/RcsbSeacrh/FacetStore/SingleFacets.js +2 -2
- package/lib/RcsbSeacrh/FacetStore/SingleFacets.js.map +1 -1
- package/lib/RcsbSeacrh/FacetStore/UniprotGroupFacetStore.d.ts +1 -1
- package/lib/RcsbSeacrh/FacetStore/UniprotGroupFacetStore.js +2 -2
- package/lib/RcsbSeacrh/FacetStore/UniprotGroupFacetStore.js.map +1 -1
- package/lib/RcsbSeacrh/FacetTools.d.ts +4 -4
- package/lib/RcsbSeacrh/SearchQueryTools.d.ts +4 -4
- package/lib/RcsbSeacrh/SearchQueryTools.js +3 -3
- package/lib/RcsbSeacrh/SearchQueryTools.js.map +1 -1
- package/lib/RcsbSeacrh/SearchRequestProperty.d.ts +4 -4
- package/lib/RcsbUtils/Groups/GroupGapLessTransformer.d.ts +1 -1
- package/lib/RcsbUtils/Groups/GroupProvenanceToAggregationType.d.ts +2 -2
- package/lib/RcsbUtils/Groups/GroupProvenanceToAggregationType.js +2 -2
- package/lib/RcsbUtils/Groups/GroupProvenanceToAggregationType.js.map +1 -1
- package/lib/RcsbUtils/PairwiseAlignmentTools/AlignmentReference.d.ts +1 -1
- package/lib/RcsbUtils/PairwiseAlignmentTools/PairwiseAlignmentBuilder.js +1 -1
- package/lib/RcsbUtils/PairwiseAlignmentTools/PairwiseAlignmentBuilder.js.map +1 -1
- package/lib/RcsbUtils/TrackGenerators/BurialFraction.d.ts +1 -1
- package/lib/RcsbUtils/TrackGenerators/BurialFraction.js +1 -1
- package/lib/RcsbUtils/TrackGenerators/BurialFraction.js.map +1 -1
- package/lib/RcsbUtils/TrackGenerators/BuriedResidues.d.ts +1 -1
- package/lib/RcsbUtils/TrackGenerators/BuriedResidues.js +1 -1
- package/lib/RcsbUtils/TrackGenerators/BuriedResidues.js.map +1 -1
- package/lib/RcsbUtils/TrackGenerators/Logo.d.ts +1 -1
- package/lib/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.d.ts +1 -1
- package/lib/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.js +1 -1
- package/lib/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.js.map +1 -1
- package/lib/RcsbUtils/Translators/MultipleEntityInstanceTranslate.js +1 -1
- package/lib/RcsbUtils/Translators/MultipleEntityInstanceTranslate.js.map +1 -1
- package/lib/RcsbUtils/Translators/PolymerEntityInstanceTranslate.d.ts +1 -1
- package/lib/RcsbUtils/Translators/PolymerEntityInstanceTranslate.js +2 -2
- package/lib/RcsbUtils/Translators/PolymerEntityInstanceTranslate.js.map +1 -1
- package/lib/commonjs/RcsbAnnotationConfig/RcsbAnnotationConfig.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/AlignmentCollector/AlignmentCollector.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/AnnotationCollector/AnnotationCollector.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/DataCollectors/GroupMemberCollector.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/DataCollectors/GroupPropertyCollector.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/DataCollectors/InterfaceInstanceCollector.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/DataCollectors/MultipleEntityInstancesCollector.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.d.ts +2 -2
- package/lib/commonjs/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.d.ts +1 -1
- package/lib/commonjs/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.js +1 -1
- package/lib/commonjs/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.js +1 -1
- package/lib/commonjs/RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector.d.ts +2 -2
- package/lib/commonjs/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.d.ts +1 -1
- package/lib/commonjs/RcsbExport/FeatureType.d.ts +1 -1
- package/lib/commonjs/RcsbExport/FeatureType.js +1 -1
- package/lib/commonjs/RcsbFvExamples/ExternalDataProvider.js +1 -1
- package/lib/commonjs/RcsbFvExamples/GroupHistogram.js +1 -1
- package/lib/commonjs/RcsbFvExamples/InstanceSequenceFv.js +1 -1
- package/lib/commonjs/RcsbFvExamples/SequenceIdentityGroupFv.js +1 -1
- package/lib/commonjs/RcsbFvExamples/UniprotGroupFv.js +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.js +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.d.ts +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js +3 -3
- package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupBuilder.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder.d.ts +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.js +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.js +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.d.ts +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js +3 -3
- package/lib/commonjs/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.d.ts +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.d.ts +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.js +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface.d.ts +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvProteinSequence.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprot.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotAlignment.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotEntity.js +2 -2
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotInstance.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvWorkers/RcsbFvAlignmentCollectorQueue.d.ts +1 -1
- package/lib/commonjs/RcsbGraphQL/RcsbClient.d.ts +2 -2
- package/lib/commonjs/RcsbGraphQL/RcsbCoreQueryInterface.d.ts +1 -1
- package/lib/commonjs/RcsbGraphQL/RcsbQueryAlignment.d.ts +2 -2
- package/lib/commonjs/RcsbGraphQL/RcsbQueryAnnotations.d.ts +2 -2
- package/lib/commonjs/RcsbGraphQL/RcsbQueryAssemblyInterfaces.d.ts +2 -2
- package/lib/commonjs/RcsbGraphQL/RcsbQueryEntryInstances.d.ts +2 -2
- package/lib/commonjs/RcsbGraphQL/RcsbQueryGroup.d.ts +2 -2
- package/lib/commonjs/RcsbGraphQL/RcsbQueryInterfaceInstances.d.ts +2 -2
- package/lib/commonjs/RcsbGraphQL/RcsbQueryMultipleEntityInstances.d.ts +2 -2
- package/lib/commonjs/RcsbGraphQL/RcsbQueryMultipleEntriesProperties.d.ts +2 -2
- package/lib/commonjs/RcsbGraphQL/RcsbQueryMultipleInstanceSequences.d.ts +2 -2
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupBuilder.d.ts +3 -3
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.d.ts +1 -1
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.js +1 -1
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartTools.d.ts +2 -2
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbGroupChartComponent.d.ts +2 -2
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbStatsChartComponent.d.ts +3 -3
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupContent/RcsbGroupContentComponent.d.ts +2 -2
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupContent/RcsbGroupContentComponent.js +1 -1
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupDisplay.d.ts +3 -3
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMemberItem.d.ts +2 -2
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMemberItem.js +2 -2
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.d.ts +2 -2
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.js +4 -4
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.d.ts +3 -3
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.js +2 -2
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/RcsbGroupSeacrhQueryComponent.d.ts +2 -2
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/SearchQueryContextManager.d.ts +3 -3
- package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools.js +1 -1
- package/lib/commonjs/RcsbQueries/QueryCheck.js +1 -1
- package/lib/commonjs/RcsbRequest/RcsbRequestClient.d.ts +2 -2
- package/lib/commonjs/RcsbRequest/RcsbRequestClient.js +2 -2
- package/lib/commonjs/RcsbRequest/RcsbRequestContextManager.d.ts +5 -5
- package/lib/commonjs/RcsbRequest/RcsbRequestContextManager.js +3 -3
- package/lib/commonjs/RcsbSeacrh/FacetStore/DepositionGroupFacetStore.d.ts +1 -1
- package/lib/commonjs/RcsbSeacrh/FacetStore/DepositionGroupFacetStore.js +2 -2
- package/lib/commonjs/RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore.d.ts +1 -1
- package/lib/commonjs/RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore.js +2 -2
- package/lib/commonjs/RcsbSeacrh/FacetStore/FacetMemberInterface.d.ts +1 -1
- package/lib/commonjs/RcsbSeacrh/FacetStore/FacetStoreInterface.d.ts +1 -1
- package/lib/commonjs/RcsbSeacrh/FacetStore/SequenceGroupFacetStore.d.ts +1 -1
- package/lib/commonjs/RcsbSeacrh/FacetStore/SequenceGroupFacetStore.js +2 -2
- package/lib/commonjs/RcsbSeacrh/FacetStore/SingleFacets.js +2 -2
- package/lib/commonjs/RcsbSeacrh/FacetStore/UniprotGroupFacetStore.d.ts +1 -1
- package/lib/commonjs/RcsbSeacrh/FacetStore/UniprotGroupFacetStore.js +2 -2
- package/lib/commonjs/RcsbSeacrh/FacetTools.d.ts +4 -4
- package/lib/commonjs/RcsbSeacrh/SearchQueryTools.d.ts +4 -4
- package/lib/commonjs/RcsbSeacrh/SearchQueryTools.js +3 -3
- package/lib/commonjs/RcsbSeacrh/SearchRequestProperty.d.ts +4 -4
- package/lib/commonjs/RcsbUtils/Groups/GroupGapLessTransformer.d.ts +1 -1
- package/lib/commonjs/RcsbUtils/Groups/GroupProvenanceToAggregationType.d.ts +2 -2
- package/lib/commonjs/RcsbUtils/Groups/GroupProvenanceToAggregationType.js +2 -2
- package/lib/commonjs/RcsbUtils/PairwiseAlignmentTools/AlignmentReference.d.ts +1 -1
- package/lib/commonjs/RcsbUtils/PairwiseAlignmentTools/PairwiseAlignmentBuilder.js +1 -1
- package/lib/commonjs/RcsbUtils/TrackGenerators/BurialFraction.d.ts +1 -1
- package/lib/commonjs/RcsbUtils/TrackGenerators/BurialFraction.js +1 -1
- package/lib/commonjs/RcsbUtils/TrackGenerators/BuriedResidues.d.ts +1 -1
- package/lib/commonjs/RcsbUtils/TrackGenerators/BuriedResidues.js +1 -1
- package/lib/commonjs/RcsbUtils/TrackGenerators/Logo.d.ts +1 -1
- package/lib/commonjs/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.d.ts +1 -1
- package/lib/commonjs/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.js +1 -1
- package/lib/commonjs/RcsbUtils/Translators/MultipleEntityInstanceTranslate.js +1 -1
- package/lib/commonjs/RcsbUtils/Translators/PolymerEntityInstanceTranslate.d.ts +1 -1
- package/lib/commonjs/RcsbUtils/Translators/PolymerEntityInstanceTranslate.js +2 -2
- package/package.json +3 -3
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const SingleFacets_1 = require("../RcsbSeacrh/FacetStore/SingleFacets");
|
|
6
6
|
const groupId = "P01112";
|
|
7
7
|
// buildGroupContent("select", GroupProvenanceId.ProvenanceSequenceIdentity, groupId);
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
|
-
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/
|
|
3
|
+
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
|
|
4
4
|
const RcsbFvBuilder_1 = require("../RcsbFvWeb/RcsbFvBuilder");
|
|
5
5
|
(0, RcsbFvBuilder_1.buildInstanceSequenceFv)("pfv", "select", "8PDU", {
|
|
6
6
|
module: "interface",
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
const RcsbFvBuilder_1 = require("../RcsbFvWeb/RcsbFvBuilder");
|
|
4
|
-
const DwEnums_1 = require("@rcsb/rcsb-api-tools/
|
|
4
|
+
const DwEnums_1 = require("@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums");
|
|
5
5
|
// rcsbRequestCtxManager.initializeBorregoClient({api:"https://clustrelax-dev.rcsb.org/graphql"});
|
|
6
6
|
const query = {
|
|
7
7
|
"query": {
|
|
@@ -1,8 +1,8 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
const RcsbFvBuilder_1 = require("../RcsbFvWeb/RcsbFvBuilder");
|
|
4
|
-
const DwEnums_1 = require("@rcsb/rcsb-api-tools/
|
|
5
|
-
// import {SearchQuery} from "@rcsb/rcsb-api-tools/
|
|
4
|
+
const DwEnums_1 = require("@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums");
|
|
5
|
+
// import {SearchQuery} from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchQueryInterface";
|
|
6
6
|
/* const query: SearchQuery = {
|
|
7
7
|
"query": {
|
|
8
8
|
"type": "group",
|
|
@@ -5,7 +5,7 @@ const tslib_1 = require("tslib");
|
|
|
5
5
|
const RcsbFvChromosome_1 = require("../RcsbFvModule/RcsbFvChromosome");
|
|
6
6
|
const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
|
|
7
7
|
const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
|
|
8
|
-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
|
|
8
|
+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
|
|
9
9
|
class RcsbFvChromosomeBuilder {
|
|
10
10
|
static buildFullChromosome(elementFvId, chrId) {
|
|
11
11
|
return tslib_1.__awaiter(this, void 0, void 0, function* () {
|
|
@@ -3,10 +3,10 @@ Object.defineProperty(exports, "__esModule", { value: true });
|
|
|
3
3
|
exports.RcsbFvEntityBuilder = void 0;
|
|
4
4
|
const tslib_1 = require("tslib");
|
|
5
5
|
const RcsbFvEntity_1 = require("../RcsbFvModule/RcsbFvEntity");
|
|
6
|
-
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/
|
|
6
|
+
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
|
|
7
7
|
const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
|
|
8
8
|
const RcsbFvUniprotBuilder_1 = require("./RcsbFvUniprotBuilder");
|
|
9
|
-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
|
|
9
|
+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
|
|
10
10
|
class RcsbFvEntityBuilder {
|
|
11
11
|
static buildEntitySummaryFv(elementFvId, elementSelectId, entityId, additionalConfig) {
|
|
12
12
|
return tslib_1.__awaiter(this, void 0, void 0, function* () {
|
|
@@ -1,5 +1,5 @@
|
|
|
1
|
-
import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/
|
|
2
|
-
import { SearchQuery } from "@rcsb/rcsb-api-tools/
|
|
1
|
+
import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
|
|
2
|
+
import { SearchQuery } from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchQueryInterface";
|
|
3
3
|
import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
|
|
4
4
|
import { ActionMethods } from "../../RcsbFvUI/Helper/ActionMethods";
|
|
5
5
|
export declare class RcsbFvGroupAlignmentBuilder {
|
|
@@ -2,15 +2,15 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.RcsbFvGroupAlignmentBuilder = void 0;
|
|
4
4
|
const tslib_1 = require("tslib");
|
|
5
|
-
const DwEnums_1 = require("@rcsb/rcsb-api-tools/
|
|
5
|
+
const DwEnums_1 = require("@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums");
|
|
6
6
|
const SearchRequestProperty_1 = require("../../RcsbSeacrh/SearchRequestProperty");
|
|
7
7
|
const SearchQueryTools_1 = require("../../RcsbSeacrh/SearchQueryTools");
|
|
8
|
-
const SearchEnums_1 = require("@rcsb/rcsb-api-tools/
|
|
8
|
+
const SearchEnums_1 = require("@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchEnums");
|
|
9
9
|
const GroupPfvApp_1 = require("../RcsbFvGroup/GroupTabs/GroupPfvApp");
|
|
10
10
|
const ActionMethods_1 = require("../../RcsbFvUI/Helper/ActionMethods");
|
|
11
11
|
const RcsbFvUniprotBuilder_1 = require("./RcsbFvUniprotBuilder");
|
|
12
12
|
const GroupExternalTrackBuilder_1 = require("../../RcsbUtils/TrackGenerators/GroupExternalTrackBuilder");
|
|
13
|
-
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/
|
|
13
|
+
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
|
|
14
14
|
const RcsbFvGroupBuilder_1 = require("./RcsbFvGroupBuilder");
|
|
15
15
|
const GroupPfvUI_1 = require("../../RcsbFvUI/GroupPfvUI");
|
|
16
16
|
const PaginationItemComponent_1 = require("../../RcsbFvUI/Components/PaginationItemComponent");
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
|
|
2
|
-
import { GroupReference, SequenceReference } from "@rcsb/rcsb-api-tools/
|
|
2
|
+
import { GroupReference, SequenceReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
3
3
|
export declare class RcsbFvGroupBuilder {
|
|
4
4
|
static buildGroupAnnotationFv(elementId: string, group: GroupReference, groupId: string, to: SequenceReference, from?: SequenceReference, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
|
|
5
5
|
static buildGroupAlignmentFv(elementId: string, group: GroupReference, groupId: string, to: SequenceReference, from?: SequenceReference, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
|
|
@@ -6,7 +6,7 @@ const RcsbFvInstance_1 = require("../RcsbFvModule/RcsbFvInstance");
|
|
|
6
6
|
const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
|
|
7
7
|
const RcsbFvInterface_1 = require("../RcsbFvModule/RcsbFvInterface");
|
|
8
8
|
const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
|
|
9
|
-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
|
|
9
|
+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
|
|
10
10
|
//TODO Find a better structure for change callbacks
|
|
11
11
|
class RcsbFvInstanceBuilder {
|
|
12
12
|
static buildMultipleInstanceSequenceFv(elementFvId_1, elementEntrySelectId_1, elementInstanceSelectId_1, entryIdList_1) {
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { SequenceReference } from "@rcsb/rcsb-api-tools/
|
|
1
|
+
import { SequenceReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
2
2
|
import { RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
|
|
3
3
|
export interface PfvBuilderInterface {
|
|
4
4
|
queryId: string;
|
|
@@ -2,7 +2,7 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.RcsbFvProteinSequenceBuilder = void 0;
|
|
4
4
|
const tslib_1 = require("tslib");
|
|
5
|
-
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/
|
|
5
|
+
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
|
|
6
6
|
const RcsbFvProteinSequence_1 = require("../RcsbFvModule/RcsbFvProteinSequence");
|
|
7
7
|
const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
|
|
8
8
|
class RcsbFvProteinSequenceBuilder {
|
|
@@ -8,7 +8,7 @@ const RcsbFvUniprot_1 = require("../RcsbFvModule/RcsbFvUniprot");
|
|
|
8
8
|
const RcsbFvCoreBuilder_1 = require("./RcsbFvCoreBuilder");
|
|
9
9
|
const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
|
|
10
10
|
const RcsbFvUniprotAlignment_1 = require("../RcsbFvModule/RcsbFvUniprotAlignment");
|
|
11
|
-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
|
|
11
|
+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
|
|
12
12
|
const ALL = "ALL";
|
|
13
13
|
//TODO Find a better structure for change callbacks
|
|
14
14
|
class RcsbFvUniprotBuilder {
|
|
@@ -2,8 +2,8 @@ import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface, RcsbModuleDataProv
|
|
|
2
2
|
import { UniprotSequenceConfig } from "./RcsbFvBuilder/RcsbFvUniprotBuilder";
|
|
3
3
|
import { InstanceSequenceConfig, InstanceSequenceOnchangeInterface } from "./RcsbFvBuilder/RcsbFvInstanceBuilder";
|
|
4
4
|
import { PfvBuilderInterface } from "./RcsbFvBuilder/RcsbFvProteinSequenceBuilder";
|
|
5
|
-
import { SearchQuery } from "@rcsb/rcsb-api-tools/
|
|
6
|
-
import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/
|
|
5
|
+
import { SearchQuery } from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchQueryInterface";
|
|
6
|
+
import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
|
|
7
7
|
import { PairwiseAlignmentInterface } from "../RcsbUtils/PairwiseAlignmentTools/PairwiseAlignmentBuilder";
|
|
8
8
|
import { ActionMethods } from "../RcsbFvUI/Helper/ActionMethods";
|
|
9
9
|
export declare function unmount(elementId: string): void;
|
|
@@ -30,7 +30,7 @@ const RcsbFvEntityBuilder_1 = require("./RcsbFvBuilder/RcsbFvEntityBuilder");
|
|
|
30
30
|
const RcsbFvInstanceBuilder_1 = require("./RcsbFvBuilder/RcsbFvInstanceBuilder");
|
|
31
31
|
const RcsbFvProteinSequenceBuilder_1 = require("./RcsbFvBuilder/RcsbFvProteinSequenceBuilder");
|
|
32
32
|
const RcsbFvAssemblyBuilder_1 = require("./RcsbFvBuilder/RcsbFvAssemblyBuilder");
|
|
33
|
-
const DwEnums_1 = require("@rcsb/rcsb-api-tools/
|
|
33
|
+
const DwEnums_1 = require("@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums");
|
|
34
34
|
const RcsbFvGroupTabsBuilder_1 = require("./RcsbFvGroup/RcsbFvGroupTabsBuilder");
|
|
35
35
|
const RcsbFvGroupAlignmentBuilder_1 = require("./RcsbFvBuilder/RcsbFvGroupAlignmentBuilder");
|
|
36
36
|
const RcsbFvDataProviderBuilder_1 = require("./RcsbFvBuilder/RcsbFvDataProviderBuilder");
|
package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.d.ts
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { SequenceAlignments, TargetAlignments } from "@rcsb/rcsb-api-tools/
|
|
1
|
+
import { SequenceAlignments, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
2
2
|
import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
3
3
|
import { AlignmentRequestContextType } from "../RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory";
|
|
4
4
|
import { BlockFactoryInterface } from "./BlockFactoryInterface";
|
package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.d.ts
CHANGED
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { SequenceAnnotations } from "@rcsb/rcsb-api-tools/
|
|
1
|
+
import { SequenceAnnotations } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
2
2
|
import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
3
3
|
import { AnnotationRequestContext } from "../../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
|
|
4
4
|
import { BlockFactoryInterface } from "./BlockFactoryInterface";
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { SequenceAnnotations } from "@rcsb/rcsb-api-tools/
|
|
1
|
+
import { SequenceAnnotations } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
2
2
|
import { RcsbAnnotationConfig } from "../../../../RcsbAnnotationConfig/RcsbAnnotationConfig";
|
|
3
3
|
import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
4
4
|
import { AnnotationRequestContext } from "../../../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import { RcsbFvTrackDataElementGapInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
|
|
2
|
-
import { FeaturesFeaturePositions } from "@rcsb/rcsb-api-tools/
|
|
2
|
+
import { FeaturesFeaturePositions } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
3
3
|
import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
4
4
|
import { RcsbAnnotationConfigInterface } from "../../../../RcsbAnnotationConfig/AnnotationConfigInterface";
|
|
5
5
|
import { TrackManagerFactoryInterface, TrackManagerInterface } from "./TrackManagerInterface";
|
|
@@ -1,12 +1,12 @@
|
|
|
1
1
|
"use strict";
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.AnnotationTrackManagerFactory = void 0;
|
|
4
|
-
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/
|
|
4
|
+
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
|
|
5
5
|
const TrackUtils_1 = require("../../RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils");
|
|
6
6
|
const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
|
|
7
7
|
var assertElementListDefined = Assertions_1.Assertions.assertElementListDefined;
|
|
8
8
|
var assertDefined = Assertions_1.Assertions.assertDefined;
|
|
9
|
-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
|
|
9
|
+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
|
|
10
10
|
class AnnotationTrackManagerFactory {
|
|
11
11
|
getTrackManager(trackId, annotationConfig, entityInstanceTranslator) {
|
|
12
12
|
return new AnnotationTrackManager(trackId, annotationConfig, entityInstanceTranslator);
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
|
|
2
2
|
import { RcsbAnnotationConfigInterface } from "../../../../RcsbAnnotationConfig/AnnotationConfigInterface";
|
|
3
|
-
import { Features, SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/
|
|
3
|
+
import { Features, SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
4
4
|
import { AnnotationProcessingInterface } from "../../../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
|
|
5
5
|
import { RcsbFvTrackDataAnnotationInterface } from "../../RcsbFvTrackFactory/RcsbFvTrackDataAnnotationInterface";
|
|
6
6
|
export interface TrackManagerFactoryInterface<T extends any[]> {
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
2
2
|
import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
|
|
3
|
-
import { AlignedRegions, TargetAlignments } from "@rcsb/rcsb-api-tools/
|
|
3
|
+
import { AlignedRegions, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
4
4
|
import { PolymerEntityInstanceTranslate, AlignmentContextInterface } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
5
5
|
import { TrackFactoryInterface } from "../TrackFactoryInterface";
|
|
6
6
|
import { AlignmentCollectConfig } from "../../../../RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface";
|
|
@@ -1,4 +1,4 @@
|
|
|
1
|
-
import { SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/
|
|
1
|
+
import { SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
2
2
|
export declare namespace TrackUtils {
|
|
3
3
|
function getProvenanceConfigFormTarget(targetId: string, targetSource: SequenceReference | AnnotationReference): {
|
|
4
4
|
name: string;
|
|
@@ -2,7 +2,7 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.TrackUtils = void 0;
|
|
4
4
|
const RcsbAnnotationConstants_1 = require("../../../../../RcsbAnnotationConfig/RcsbAnnotationConstants");
|
|
5
|
-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
|
|
5
|
+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
|
|
6
6
|
var TrackUtils;
|
|
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(function (TrackUtils) {
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function getProvenanceConfigFormTarget(targetId, targetSource) {
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import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
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import { TrackFactoryInterface } from "../TrackFactoryInterface";
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import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
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import { SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/
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import { SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
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import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
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export declare class MsaAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
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private observedAlignmentTrackFactory;
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@@ -4,7 +4,7 @@ exports.MsaAlignmentTrackFactory = void 0;
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const tslib_1 = require("tslib");
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const PositionalScoreAlignmentTrackFactory_1 = require("./PositionalScoreAlignmentTrackFactory");
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const PlainObservedAlignmentTrackFactory_1 = require("./PlainObservedAlignmentTrackFactory");
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const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
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const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
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class MsaAlignmentTrackFactory {
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constructor(entityInstanceTranslator) {
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this.observedAlignmentTrackFactory = new PlainObservedAlignmentTrackFactory_1.PlainObservedAlignmentTrackFactory(entityInstanceTranslator);
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@@ -1,6 +1,6 @@
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import { RcsbFvColorGradient, RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
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import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
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-
import { AlignedRegions, TargetAlignments } from "@rcsb/rcsb-api-tools/
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+
import { AlignedRegions, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
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import { PolymerEntityInstanceTranslate, AlignmentContextInterface } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
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import { TrackFactoryInterface } from "../TrackFactoryInterface";
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import { AlignmentCollectConfig } from "../../../../RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface";
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@@ -1,5 +1,5 @@
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import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
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2
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-
import { SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/
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+
import { SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
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3
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import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
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import { TrackFactoryInterface } from "../TrackFactoryInterface";
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import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
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@@ -9,7 +9,7 @@ const TrackUtils_1 = require("./Helper/TrackUtils");
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const RcsbRequestContextManager_1 = require("../../../../RcsbRequest/RcsbRequestContextManager");
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const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
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var assertDefined = Assertions_1.Assertions.assertDefined;
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-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
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+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
|
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class PlainObservedAlignmentTrackFactory {
|
|
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14
|
constructor(entityInstanceTranslator) {
|
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15
15
|
this.unObservedResidues = new Map();
|
|
@@ -1,6 +1,6 @@
|
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1
1
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import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
|
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2
2
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import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
3
|
-
import { AlignedRegions, SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/
|
|
3
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+
import { AlignedRegions, SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
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4
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import { AlignmentContextInterface, PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
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5
5
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import { TrackFactoryInterface } from "../TrackFactoryInterface";
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6
|
import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
|
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@@ -2,7 +2,7 @@
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2
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Object.defineProperty(exports, "__esModule", { value: true });
|
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3
3
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exports.PositionalScoreAlignmentTrackFactory = void 0;
|
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4
4
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const tslib_1 = require("tslib");
|
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5
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-
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/
|
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5
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+
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
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const Operator_1 = require("../../../../RcsbUtils/Helpers/Operator");
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const lodash_1 = require("lodash");
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8
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const PlainAlignmentTrackFactory_1 = require("./PlainAlignmentTrackFactory");
|
|
@@ -10,7 +10,7 @@ const TrackUtils_1 = require("./Helper/TrackUtils");
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10
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|
const RcsbRequestContextManager_1 = require("../../../../RcsbRequest/RcsbRequestContextManager");
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const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
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var assertDefined = Assertions_1.Assertions.assertDefined;
|
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13
|
-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
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+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
|
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|
class PositionalScoreAlignmentTrackFactory {
|
|
15
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|
constructor(entityInstanceTranslator) {
|
|
16
16
|
this.positionalScores = new Map();
|
|
@@ -2,12 +2,12 @@
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2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.SequenceTrackFactory = void 0;
|
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4
4
|
const tslib_1 = require("tslib");
|
|
5
|
-
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/
|
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5
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+
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
|
|
6
6
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const SequenceTrackTitleFactory_1 = require("../TrackTitleFactoryImpl/SequenceTrackTitleFactory");
|
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const TrackUtils_1 = require("./Helper/TrackUtils");
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8
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const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
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|
var assertDefined = Assertions_1.Assertions.assertDefined;
|
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10
|
-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
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+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
|
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11
11
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class SequenceTrackFactory {
|
|
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|
constructor(entityInstanceTranslator, trackTitleFactory) {
|
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this.entityInstanceTranslator = undefined;
|
|
@@ -1,6 +1,6 @@
|
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1
1
|
import { RcsbFvLink } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
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2
2
|
import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
|
|
3
|
-
import { TargetAlignments } from "@rcsb/rcsb-api-tools/
|
|
3
|
+
import { TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
4
4
|
import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
|
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5
5
|
import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
6
6
|
export declare class AlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
|
|
@@ -4,7 +4,7 @@ exports.AlignmentTrackTitleFactory = void 0;
|
|
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4
4
|
const tslib_1 = require("tslib");
|
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5
5
|
const ExperimentalAlignmentTrackTitleFactory_1 = require("./ExperimentalAlignmentTrackTitleFactory");
|
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6
6
|
const ModelAlignmentTrackTitleFactory_1 = require("./ModelAlignmentTrackTitleFactory");
|
|
7
|
-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
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7
|
+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
|
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8
8
|
class AlignmentTrackTitleFactory {
|
|
9
9
|
constructor(entityInstanceTranslator) {
|
|
10
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|
this.experimentalTrackTitleFactory = new ExperimentalAlignmentTrackTitleFactory_1.ExperimentalAlignmentTrackTitleFactory(entityInstanceTranslator);
|
|
@@ -1,6 +1,6 @@
|
|
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1
1
|
import { RcsbFvLink } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
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2
2
|
import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
|
|
3
|
-
import { TargetAlignments } from "@rcsb/rcsb-api-tools/
|
|
3
|
+
import { TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
4
4
|
import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
|
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5
5
|
import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
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6
6
|
export declare class ExperimentalAlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
|
|
@@ -2,12 +2,12 @@
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Object.defineProperty(exports, "__esModule", { value: true });
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exports.ExperimentalAlignmentTrackTitleFactory = void 0;
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const tslib_1 = require("tslib");
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5
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-
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/
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+
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
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const web_resources_json_1 = tslib_1.__importDefault(require("../../../../RcsbServerConfig/web.resources.json"));
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const RcsbAnnotationConstants_1 = require("../../../../RcsbAnnotationConfig/RcsbAnnotationConstants");
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const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
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|
var assertDefined = Assertions_1.Assertions.assertDefined;
|
|
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|
-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
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|
+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
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11
11
|
class ExperimentalAlignmentTrackTitleFactory {
|
|
12
12
|
constructor(entityInstanceTranslator) {
|
|
13
13
|
this.entityInstanceTranslator = undefined;
|
|
@@ -1,7 +1,7 @@
|
|
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1
1
|
import { RcsbFvLink } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
2
2
|
import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
|
|
3
3
|
import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
|
|
4
|
-
import { TargetAlignments } from "@rcsb/rcsb-api-tools/
|
|
4
|
+
import { TargetAlignments } from "@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
5
5
|
import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
6
6
|
export declare class ModelAlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
|
|
7
7
|
private readonly alignmentTrackTitleFactory;
|
|
@@ -2,13 +2,13 @@
|
|
|
2
2
|
Object.defineProperty(exports, "__esModule", { value: true });
|
|
3
3
|
exports.SequenceTrackTitleFactory = void 0;
|
|
4
4
|
const tslib_1 = require("tslib");
|
|
5
|
-
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/
|
|
5
|
+
const GqlTypes_1 = require("@rcsb/rcsb-api-tools/lib/RcsbGraphQL/Types/Borrego/GqlTypes");
|
|
6
6
|
const web_resources_json_1 = tslib_1.__importDefault(require("../../../../RcsbServerConfig/web.resources.json"));
|
|
7
7
|
const RcsbAnnotationConstants_1 = require("../../../../RcsbAnnotationConfig/RcsbAnnotationConstants");
|
|
8
8
|
const TrackUtils_1 = require("../TrackFactoryImpl/Helper/TrackUtils");
|
|
9
9
|
const Assertions_1 = require("../../../../RcsbUtils/Helpers/Assertions");
|
|
10
10
|
var assertDefined = Assertions_1.Assertions.assertDefined;
|
|
11
|
-
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/
|
|
11
|
+
const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/lib/RcsbUtils/TagDelimiter");
|
|
12
12
|
class SequenceTrackTitleFactory {
|
|
13
13
|
constructor(entityInstanceTranslator) {
|
|
14
14
|
this.entityInstanceTranslator = undefined;
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
import React, { ReactNode } from "react";
|
|
2
2
|
import { RcsbFvAdditionalConfig } from "../RcsbFvModule/RcsbFvModuleInterface";
|
|
3
|
-
import { SearchQuery } from "@rcsb/rcsb-api-tools/
|
|
4
|
-
import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/
|
|
3
|
+
import { SearchQuery } from "@rcsb/rcsb-api-tools/lib/RcsbSearch/Types/SearchQueryInterface";
|
|
4
|
+
import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/lib/RcsbDw/Types/DwEnums";
|
|
5
5
|
interface SequenceTabInterface {
|
|
6
6
|
groupProvenanceId: GroupProvenanceId;
|
|
7
7
|
groupId: string;
|