@rcsb/rcsb-saguaro-app 6.3.7-dev-js-seqcoord.14 → 6.3.7-react-downgrade.0

package/lib/RcsbFvWeb/RcsbFvTooltip/RcsbFvTooltip.js

@@ -57,7 +57,7 @@ export class RcsbFvTooltip {
         if (d.description == null || d.description.length == 0)
             return undefined;
         const tooltipDescriptionDiv = document.createElement("div");
-        d.description.slice(0, 2).forEach(des => {
+        d.description.forEach(des => {
             const desDiv = document.createElement("div");
             desDiv.append(des);
             tooltipDescriptionDiv.append(desDiv);
@@ -80,4 +80,3 @@ export class RcsbFvTooltip {
         return b;
     }
 }
-//# sourceMappingURL=RcsbFvTooltip.js.map

package/lib/RcsbFvWeb/RcsbFvWorkers/RcsbFvAlignmentCollectorQueue.d.ts

@@ -1,11 +1,11 @@
-import { QueryAlignmentsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { QueryAlignmentArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 export declare class RcsbFvAlignmentCollectorQueue {
     private readonly nWorkers;
     private readonly workerList;
     private readonly taskQueue;
     private isQueueActive;
     constructor(nWorkers?: number);
-    sendTask(request: QueryAlignmentsArgs, callback: (data: any) => void): void;
+    sendTask(request: QueryAlignmentArgs, callback: (data: any) => void): void;
     private activateQueue;
     private recursiveExec;
     terminateWorkers(): void;

package/lib/RcsbFvWeb/RcsbFvWorkers/RcsbFvAlignmentCollectorQueue.js

@@ -65,4 +65,3 @@ export class RcsbFvAlignmentCollectorQueue {
         });
     }
 }
-//# sourceMappingURL=RcsbFvAlignmentCollectorQueue.js.map

package/lib/RcsbFvWeb/RcsbFvWorkers/RcsbFvAlignmentCollectorWorker.worker.js

@@ -8,4 +8,3 @@ worker.onmessage = function (message) {
         postMessage(result);
     });
 };
-//# sourceMappingURL=RcsbFvAlignmentCollectorWorker.worker.js.map

package/lib/RcsbGraphQL/RcsbClient.d.ts

@@ -1,10 +1,9 @@
 import { RcsbQueryGroupAlignmentArguments } from "./RcsbQueryAlignment";
-import { SequenceAlignments, SequenceAnnotations, QueryAlignmentsArgs, QueryAnnotationsArgs, QueryGroup_AnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { AlignmentResponse, AnnotationFeatures, QueryAlignmentArgs, QueryAnnotationsArgs, QueryGroup_AnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { CoreAssembly, CoreEntry, CoreInterface, CorePolymerEntity, QueryAssembliesArgs, GroupPolymerEntity, QueryEntriesArgs, QueryEntryArgs, QueryInterfacesArgs, QueryPolymer_EntitiesArgs, QueryPolymer_Entity_GroupArgs, QueryPolymer_Entity_InstancesArgs, CorePolymerEntityInstance } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
 import { GraphQLRequest } from "@rcsb/rcsb-api-tools";
 declare class RcsbClientClass {
     private readonly rcsbQueryAnnotations;
-    private readonly rcsbQueryGroupAnnotationsSummary;
     private readonly rcsbQueryGroupAnnotations;
     private readonly rcsbQueryAlignment;
     private readonly rcsbQueryGroupAlignment;
@@ -19,11 +18,10 @@ declare class RcsbClientClass {
         borrego: () => GraphQLRequest;
         yosemite: () => GraphQLRequest;
     });
-    requestRcsbPdbAnnotations(requestConfig: QueryAnnotationsArgs): Promise<Array<SequenceAnnotations>>;
-    requestRcsbPdbGroupAnnotationsSummary(requestConfig: QueryGroup_AnnotationsArgs): Promise<Array<SequenceAnnotations>>;
-    requestRcsbPdbGroupAnnotations(requestConfig: QueryGroup_AnnotationsArgs): Promise<Array<SequenceAnnotations>>;
-    requestAlignment(requestConfig: QueryAlignmentsArgs): Promise<SequenceAlignments>;
-    requestGroupAlignment(requestConfig: RcsbQueryGroupAlignmentArguments): Promise<SequenceAlignments>;
+    requestRcsbPdbAnnotations(requestConfig: QueryAnnotationsArgs): Promise<Array<AnnotationFeatures>>;
+    requestRcsbPdbGroupAnnotations(requestConfig: QueryGroup_AnnotationsArgs): Promise<Array<AnnotationFeatures>>;
+    requestAlignment(requestConfig: QueryAlignmentArgs): Promise<AlignmentResponse>;
+    requestGroupAlignment(requestConfig: RcsbQueryGroupAlignmentArguments): Promise<AlignmentResponse>;
     requestEntityInstances(requestConfig: QueryEntryArgs): Promise<CoreEntry>;
     requestMultipleEntityInstances(requestConfig: QueryPolymer_EntitiesArgs): Promise<Array<CorePolymerEntity>>;
     requestGroupInfo(requestConfig: QueryPolymer_Entity_GroupArgs): Promise<GroupPolymerEntity>;

package/lib/RcsbGraphQL/RcsbClient.js

@@ -1,5 +1,5 @@
 import { __awaiter } from "tslib";
-import { RcsbQueryAnnotations, RcsbQueryGroupAnnotations, RcsbQueryGroupAnnotationsSumary } from "./RcsbQueryAnnotations";
+import { RcsbQueryAnnotations, RcsbQueryGroupAnnotations } from "./RcsbQueryAnnotations";
 import { RcsbQueryAlignment, RcsbQueryGroupAlignment } from "./RcsbQueryAlignment";
 import { RcsbQueryEntryInstances } from "./RcsbQueryEntryInstances";
 import { RcsbQueryMultipleEntityInstances } from "./RcsbQueryMultipleEntityInstances";
@@ -13,7 +13,6 @@ import { RcsbQueryMultipleInstanceSequences } from "./RcsbQueryMultipleInstanceS
 class RcsbClientClass {
     constructor(get) {
         this.rcsbQueryAnnotations = new RcsbQueryAnnotations(get.borrego);
-        this.rcsbQueryGroupAnnotationsSummary = new RcsbQueryGroupAnnotationsSumary(get.borrego);
         this.rcsbQueryGroupAnnotations = new RcsbQueryGroupAnnotations(get.borrego);
         this.rcsbQueryAlignment = new RcsbQueryAlignment(get.borrego);
         this.rcsbQueryGroupAlignment = new RcsbQueryGroupAlignment(get.borrego);
@@ -30,11 +29,6 @@ class RcsbClientClass {
             return yield this.rcsbQueryAnnotations.request(requestConfig);
         });
     }
-    requestRcsbPdbGroupAnnotationsSummary(requestConfig) {
-        return __awaiter(this, void 0, void 0, function* () {
-            return yield this.rcsbQueryGroupAnnotationsSummary.request(requestConfig);
-        });
-    }
     requestRcsbPdbGroupAnnotations(requestConfig) {
         return __awaiter(this, void 0, void 0, function* () {
             return yield this.rcsbQueryGroupAnnotations.request(requestConfig);
@@ -87,4 +81,3 @@ class RcsbClientClass {
     }
 }
 export const rcsbClient = new RcsbClientClass({ borrego: () => rcsbRequestClient.borrego, yosemite: () => rcsbRequestClient.yosemite });
-//# sourceMappingURL=RcsbClient.js.map

package/lib/RcsbGraphQL/RcsbCoreQueryInterface.js

@@ -1,2 +1 @@
 export {};
-//# sourceMappingURL=RcsbCoreQueryInterface.js.map

package/lib/RcsbGraphQL/RcsbQueryAlignment.d.ts

@@ -1,20 +1,20 @@
-import { SequenceAlignments, QueryAlignmentsArgs, QueryGroup_AlignmentsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { AlignmentResponse, QueryAlignmentArgs, QueryGroup_AlignmentArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbCoreQueryInterface } from "./RcsbCoreQueryInterface";
 import { GraphQLRequest } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/GraphQLRequest";
-export declare class RcsbQueryAlignment implements RcsbCoreQueryInterface<QueryAlignmentsArgs, SequenceAlignments> {
+export declare class RcsbQueryAlignment implements RcsbCoreQueryInterface<QueryAlignmentArgs, AlignmentResponse> {
     readonly getClient: () => GraphQLRequest;
     constructor(getClient: () => GraphQLRequest);
-    request(requestConfig: QueryAlignmentsArgs): Promise<SequenceAlignments>;
+    request(requestConfig: QueryAlignmentArgs): Promise<AlignmentResponse>;
 }
-export type RcsbQueryGroupAlignmentArguments = QueryGroup_AlignmentsArgs & {
+export type RcsbQueryGroupAlignmentArguments = QueryGroup_AlignmentArgs & {
     page: {
         first: number;
-        after: number;
+        after: string;
     };
     excludeLogo?: boolean;
 };
-export declare class RcsbQueryGroupAlignment implements RcsbCoreQueryInterface<RcsbQueryGroupAlignmentArguments, SequenceAlignments> {
+export declare class RcsbQueryGroupAlignment implements RcsbCoreQueryInterface<RcsbQueryGroupAlignmentArguments, AlignmentResponse> {
     readonly getClient: () => GraphQLRequest;
     constructor(getClient: () => GraphQLRequest);
-    request(requestConfig: RcsbQueryGroupAlignmentArguments): Promise<SequenceAlignments>;
+    request(requestConfig: RcsbQueryGroupAlignmentArguments): Promise<AlignmentResponse>;
 }

package/lib/RcsbGraphQL/RcsbQueryAlignment.js

@@ -15,7 +15,7 @@ export class RcsbQueryAlignment {
                     to: requestConfig.to,
                     range: requestConfig.range
                 }, queryAlignment);
-                return result.alignments;
+                return result.alignment;
             }
             catch (error) {
                 console.error(error);
@@ -32,7 +32,7 @@ export class RcsbQueryGroupAlignment {
         return __awaiter(this, void 0, void 0, function* () {
             try {
                 const result = yield this.getClient().request({ group: requestConfig.group, groupId: requestConfig.groupId, filter: requestConfig.filter, first: requestConfig.page.first, after: requestConfig.page.after }, requestConfig.excludeLogo ? queryGroupAlignmentNoLogo : queryGroupAlignment);
-                return result.group_alignments;
+                return result.group_alignment;
             }
             catch (error) {
                 console.error(error);
@@ -41,4 +41,3 @@ export class RcsbQueryGroupAlignment {
         });
     }
 }
-//# sourceMappingURL=RcsbQueryAlignment.js.map

package/lib/RcsbGraphQL/RcsbQueryAnnotations.d.ts

@@ -1,18 +1,13 @@
-import { SequenceAnnotations, QueryAnnotationsArgs, QueryGroup_AnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { AnnotationFeatures, QueryAnnotationsArgs, QueryGroup_AnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbCoreQueryInterface } from "./RcsbCoreQueryInterface";
 import { GraphQLRequest } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/GraphQLRequest";
-export declare class RcsbQueryAnnotations implements RcsbCoreQueryInterface<QueryAnnotationsArgs, Array<SequenceAnnotations>> {
+export declare class RcsbQueryAnnotations implements RcsbCoreQueryInterface<QueryAnnotationsArgs, Array<AnnotationFeatures>> {
     readonly getClient: () => GraphQLRequest;
     constructor(getClient: () => GraphQLRequest);
-    request(requestConfig: QueryAnnotationsArgs): Promise<Array<SequenceAnnotations>>;
+    request(requestConfig: QueryAnnotationsArgs): Promise<Array<AnnotationFeatures>>;
 }
-export declare class RcsbQueryGroupAnnotationsSumary implements RcsbCoreQueryInterface<QueryGroup_AnnotationsArgs, Array<SequenceAnnotations>> {
+export declare class RcsbQueryGroupAnnotations implements RcsbCoreQueryInterface<QueryGroup_AnnotationsArgs, Array<AnnotationFeatures>> {
     readonly getClient: () => GraphQLRequest;
     constructor(getClient: () => GraphQLRequest);
-    request(requestConfig: QueryGroup_AnnotationsArgs): Promise<Array<SequenceAnnotations>>;
-}
-export declare class RcsbQueryGroupAnnotations implements RcsbCoreQueryInterface<QueryGroup_AnnotationsArgs, Array<SequenceAnnotations>> {
-    readonly getClient: () => GraphQLRequest;
-    constructor(getClient: () => GraphQLRequest);
-    request(requestConfig: QueryGroup_AnnotationsArgs): Promise<Array<SequenceAnnotations>>;
+    request(requestConfig: QueryGroup_AnnotationsArgs): Promise<Array<AnnotationFeatures>>;
 }

package/lib/RcsbGraphQL/RcsbQueryAnnotations.js

@@ -1,6 +1,5 @@
 import { __awaiter } from "tslib";
 import queryAnnotations from "../RcsbQueries/Borrego/QueryAnnotations.graphql";
-import queryGroupAnnotationsSummary from "../RcsbQueries/Borrego/QueryGroupAnnotationsSummary.graphql";
 import queryGroupAnnotations from "../RcsbQueries/Borrego/QueryGroupAnnotations.graphql";
 export class RcsbQueryAnnotations {
     constructor(getClient) {
@@ -9,7 +8,13 @@ export class RcsbQueryAnnotations {
     request(requestConfig) {
         return __awaiter(this, void 0, void 0, function* () {
             try {
-                const annotationsResponse = yield this.getClient().request(requestConfig, queryAnnotations);
+                const annotationsResponse = yield this.getClient().request({
+                    queryId: requestConfig.queryId,
+                    reference: requestConfig.reference,
+                    sources: requestConfig.sources,
+                    filters: requestConfig.filters,
+                    range: requestConfig.range
+                }, queryAnnotations);
                 return annotationsResponse.annotations;
             }
             catch (error) {
@@ -19,23 +24,6 @@ export class RcsbQueryAnnotations {
         });
     }
 }
-export class RcsbQueryGroupAnnotationsSumary {
-    constructor(getClient) {
-        this.getClient = getClient;
-    }
-    request(requestConfig) {
-        return __awaiter(this, void 0, void 0, function* () {
-            try {
-                const annotationsResponse = yield this.getClient().request(requestConfig, queryGroupAnnotationsSummary);
-                return annotationsResponse.group_annotations_summary;
-            }
-            catch (error) {
-                console.error(error);
-                throw error;
-            }
-        });
-    }
-}
 export class RcsbQueryGroupAnnotations {
     constructor(getClient) {
         this.getClient = getClient;
@@ -53,4 +41,3 @@ export class RcsbQueryGroupAnnotations {
         });
     }
 }
-//# sourceMappingURL=RcsbQueryAnnotations.js.map

package/lib/RcsbGraphQL/RcsbQueryAssemblyInterfaces.js

@@ -17,4 +17,3 @@ export class RcsbQueryAssemblyInterfaces {
         });
     }
 }
-//# sourceMappingURL=RcsbQueryAssemblyInterfaces.js.map

package/lib/RcsbGraphQL/RcsbQueryEntryInstances.js

@@ -19,4 +19,3 @@ export class RcsbQueryEntryInstances {
         });
     }
 }
-//# sourceMappingURL=RcsbQueryEntryInstances.js.map

package/lib/RcsbGraphQL/RcsbQueryGroup.js

@@ -19,4 +19,3 @@ export class RcsbQueryGroup {
         });
     }
 }
-//# sourceMappingURL=RcsbQueryGroup.js.map

package/lib/RcsbGraphQL/RcsbQueryInterfaceInstances.js

@@ -17,4 +17,3 @@ export class RcsbQueryInterfaceInstances {
         });
     }
 }
-//# sourceMappingURL=RcsbQueryInterfaceInstances.js.map

package/lib/RcsbGraphQL/RcsbQueryMultipleEntityInstances.js

@@ -19,4 +19,3 @@ export class RcsbQueryMultipleEntityInstances {
         });
     }
 }
-//# sourceMappingURL=RcsbQueryMultipleEntityInstances.js.map

package/lib/RcsbGraphQL/RcsbQueryMultipleEntriesProperties.js

@@ -19,4 +19,3 @@ export class RcsbQueryMultipleEntriesProperties {
         });
     }
 }
-//# sourceMappingURL=RcsbQueryMultipleEntriesProperties.js.map

package/lib/RcsbGraphQL/RcsbQueryMultipleInstanceSequences.js

@@ -19,4 +19,3 @@ export class RcsbQueryMultipleInstanceSequences {
         });
     }
 }
-//# sourceMappingURL=RcsbQueryMultipleInstanceSequences.js.map

package/lib/RcsbGroupWeb/RcsbGroupBuilder.js

@@ -26,4 +26,3 @@ export const searchQueryContextManager = {
         return SearchQueryContextManager.subscribe(f);
     }
 };
-//# sourceMappingURL=RcsbGroupBuilder.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartAdditionalProperties.js

@@ -1,2 +1 @@
 export {};
-//# sourceMappingURL=GroupChartAdditionalProperties.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.js

@@ -126,4 +126,3 @@ export var GroupChartEvents;
         }
     }
 })(GroupChartEvents || (GroupChartEvents = {}));
-//# sourceMappingURL=GroupChartEvents.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartLayout.d.ts

@@ -1,4 +1,4 @@
-import React, { ReactNode } from "react";
+import React from "react";
 import { RcsbChartInterface } from "../../../RcsbSeacrh/FacetTools";
 export type ChartMapType = Map<string, RcsbChartInterface[]>;
 export interface RcsbChartLayoutInterface {
@@ -6,6 +6,6 @@ export interface RcsbChartLayoutInterface {
     chartMap: ChartMapType;
 }
 export declare class GroupChartLayout extends React.Component<RcsbChartLayoutInterface, {}> {
-    render(): ReactNode;
+    render(): JSX.Element;
     private renderCell;
 }

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartLayout.js

@@ -32,4 +32,3 @@ function histogramChart(attributeName, chart) {
 function barChart(attributeName, chart) {
     return (_jsx("div", { id: `chart:${chart[0].attributeName}`, children: _jsx(BarChartComponent, { data: chart.map(c => c.data), chartConfig: chart[0].chartConfig, attributeName: attributeName }) }));
 }
-//# sourceMappingURL=GroupChartLayout.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartTools.js

@@ -89,4 +89,3 @@ export var GroupChartMap;
         });
     }
 })(GroupChartMap || (GroupChartMap = {}));
-//# sourceMappingURL=GroupChartTools.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbGroupChartComponent.d.ts

@@ -1,4 +1,4 @@
-import React, { ReactNode } from "react";
+import React from "react";
 import { ChartMapType } from "./GroupChartLayout";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
 import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
@@ -16,7 +16,7 @@ interface RcsbGroupChartState {
 }
 export declare class RcsbGroupChartComponent extends React.Component<RcsbGroupChartInterface, RcsbGroupChartState> {
     componentDidMount(): Promise<void>;
-    render(): ReactNode;
+    render(): JSX.Element;
     private updateState;
 }
 export {};

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbGroupChartComponent.js

@@ -47,4 +47,3 @@ function applyLayoutConfig(layout, chartMap, layoutConfig) {
         }
     });
 }
-//# sourceMappingURL=RcsbGroupChartComponent.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbStatsChartComponent.d.ts

@@ -1,4 +1,4 @@
-import React, { ReactNode } from "react";
+import React from "react";
 import { FacetStoreInterface } from "../../../RcsbSeacrh/FacetStore/FacetStoreInterface";
 import { BucketFacet } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchResultInterface";
 import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
@@ -13,7 +13,7 @@ interface RcsbStatsChartState {
 }
 export declare class RcsbStatsChartComponent extends React.Component<RcsbStatsChartInterface, RcsbStatsChartState> {
     componentDidMount(): Promise<void>;
-    render(): ReactNode;
+    render(): JSX.Element;
     private updateState;
 }
 export {};

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbStatsChartComponent.js

@@ -34,4 +34,3 @@ export class RcsbStatsChartComponent extends React.Component {
         });
     }
 }
-//# sourceMappingURL=RcsbStatsChartComponent.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupContent/RcsbGroupContentComponent.js

@@ -74,4 +74,3 @@ export class RcsbGroupContentComponent extends React.Component {
         };
     }
 }
-//# sourceMappingURL=RcsbGroupContentComponent.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupDisplay.js

@@ -39,4 +39,3 @@ export class RcsbGroupDisplay {
         createRoot(e).render(_jsx(RcsbResidueChartComponent, { granularity: granularity, rcsbId: rcsbId, facetLayoutGrid: facetLayoutGrid, chartDisplayConfig: chartDisplayConfig }));
     }
 }
-//# sourceMappingURL=RcsbGroupDisplay.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/Components/Slider.d.ts

@@ -9,8 +9,8 @@ export interface SliderInterface {
     displayNumber?(x: number): string;
 }
 export declare class Slider extends React.Component<SliderInterface> {
-    render(): ReactNode;
+    render(): JSX.Element;
     private slide;
     private displayNumber;
 }
-export declare function actionIcon(action: SlideAction): ReactNode;
+export declare function actionIcon(action: SlideAction): JSX.Element;

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/Components/Slider.js

@@ -17,4 +17,3 @@ export class Slider extends React.Component {
 export function actionIcon(action) {
     return (_jsx("span", { style: { cursor: "pointer" }, className: "h1 user-select-none", children: action == "prev" ? "❮" : "❯" }));
 }
-//# sourceMappingURL=Slider.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMemberItem.js

@@ -3,7 +3,7 @@ import React from "react";
 import resource from "../../../RcsbServerConfig/web.resources.json";
 import { GroupProvenanceId, StructureDeterminationMethodology } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
 import { TagDelimiter } from "@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimiter";
-import BxCube from "./icons/bxs-cube.svg";
+import BxCube from "boxicons/svg/solid/bxs-cube.svg";
 const NA = "N/A";
 export class GroupMemberItem extends React.Component {
     render() {
@@ -67,4 +67,3 @@ function imageIcon(ei) {
                     transform: "translate(-50%, -50%)"
                 }, className: `fa ${isExperimental ? "fa-flask" : "fa-desktop"}` }) }) }));
 }
-//# sourceMappingURL=GroupMemberItem.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.d.ts

@@ -1,4 +1,4 @@
-import React, { ReactNode } from "react";
+import React from "react";
 import { ItemFeaturesInterface } from "./GroupMemberItem";
 import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
@@ -15,7 +15,7 @@ interface GroupMembersGridState {
 }
 export declare class GroupMembersGrid extends React.Component<GroupMembersGridInterface, GroupMembersGridState> {
     readonly state: GroupMembersGridState;
-    render(): ReactNode;
+    render(): JSX.Element;
     componentDidMount(): Promise<void>;
     componentDidUpdate(prevProps: GroupMembersGridInterface, prevState: GroupMembersGridState, snapshot?: any): Promise<void>;
     private getMembersData;

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMembersGrid.js

@@ -96,4 +96,3 @@ function parseItems(groupProvenanceId, propsList) {
         :
             propsList.map((o) => (o.instances)).flat().map((o) => (Object.assign(Object.assign({}, o), { molecularWeight: o.entityMolecularWeight })));
 }
-//# sourceMappingURL=GroupMembersGrid.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.d.ts

@@ -1,4 +1,4 @@
-import React, { ReactNode } from "react";
+import React from "react";
 import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { QueryResult } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchResultInterface";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
@@ -18,7 +18,7 @@ export declare class RcsbGroupMembersComponent extends React.Component<RcsbGroup
     readonly state: RcsbGroupMembersState;
     readonly groupMembersDiv: string;
     constructor(props: RcsbGroupMembersInterface);
-    render(): ReactNode;
+    render(): JSX.Element;
     componentDidMount(): Promise<void>;
     componentDidUpdate(prevProps: Readonly<RcsbGroupMembersInterface>, prevState: Readonly<RcsbGroupMembersState>, snapshot?: any): Promise<void>;
     private subscribe;

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/RcsbGroupMembersComponent.js

@@ -90,4 +90,3 @@ function mod(n, p) {
     const r = n % p;
     return r < 0 ? p + r : r;
 }
-//# sourceMappingURL=RcsbGroupMembersComponent.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/RcsbGroupSeacrhQueryComponent.d.ts

@@ -1,7 +1,6 @@
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
 import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
-import { ReactNode } from "react";
 export declare class SearchQueryComponentFactory {
     private static unique;
-    static getGroupSearchComponent(groupProvenanceId: GroupProvenanceId, groupId: string, searchQuery?: SearchQuery): ReactNode;
+    static getGroupSearchComponent(groupProvenanceId: GroupProvenanceId, groupId: string, searchQuery?: SearchQuery): JSX.Element;
 }

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/RcsbGroupSeacrhQueryComponent.js

@@ -84,4 +84,3 @@ class RcsbGroupSearchQueryComponent extends React.Component {
         ]);
     }
 }
-//# sourceMappingURL=RcsbGroupSeacrhQueryComponent.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/SearchQueryContextManager.js

@@ -89,4 +89,3 @@ SearchQueryContextManager.attributeList = [];
 SearchQueryContextManager.currentSearchQuery = new DataContainer();
 SearchQueryContextManager.groupProvenanceId = new DataContainer();
 SearchQueryContextManager.groupId = new DataContainer();
-//# sourceMappingURL=SearchQueryContextManager.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/RcsbResidueChartComponent.d.ts

@@ -1,4 +1,4 @@
-import React, { ReactNode } from "react";
+import React from "react";
 import { ChartMapType } from "../RcsbGroupChart/GroupChartLayout";
 import { ResidueChartInterface } from "./ResidueChartTools/ResidueChartTools";
 import { ChartDisplayConfigInterface } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
@@ -10,7 +10,7 @@ export declare class RcsbResidueChartComponent extends React.Component<ResidueCh
     facetLayoutGrid?: string[];
     chartDisplayConfig?: Partial<ChartDisplayConfigInterface>;
 }, RcsbResidueChartState> {
-    render(): ReactNode;
+    render(): JSX.Element;
     componentDidMount(): Promise<void>;
     private updateState;
 }

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/RcsbResidueChartComponent.js

@@ -30,4 +30,3 @@ export class RcsbResidueChartComponent extends React.Component {
         });
     }
 }
-//# sourceMappingURL=RcsbResidueChartComponent.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/DistributionChartFactoryImpl/DistributionChartFactory.js

@@ -32,4 +32,3 @@ export class DistributionChartFactory {
         };
     }
 }
-//# sourceMappingURL=DistributionChartFactory.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/ResidueDistributionFactoryImpl/MultipleTrackDistributionFactory.js

@@ -30,4 +30,3 @@ export class MultipleTrackDistributionFactory {
         };
     }
 }
-//# sourceMappingURL=MultipleTrackDistributionFactory.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/ResidueDistributionFactoryImpl/NumericalTrackDistributionFactory.js

@@ -35,4 +35,3 @@ export class NumericalTrackDistributionFactory {
         };
     }
 }
-//# sourceMappingURL=NumericalTrackDistributionFactory.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/ResidueDistributionFactoryImpl/TrackDistributionFactory.js

@@ -19,4 +19,3 @@ export class TrackDistributionFactory {
         }
     }
 }
-//# sourceMappingURL=TrackDistributionFactory.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/ResidueDistributionFactoryInterface.js

@@ -1,2 +1 @@
 export {};
-//# sourceMappingURL=ResidueDistributionFactoryInterface.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/TrackBlockFactoryImpl/TrackBlockFactory.js

@@ -17,4 +17,3 @@ export class TrackBlockFactory {
         return Array.from(trackMap.entries()).map(e => ({ blockType: e[0], tracks: e[1] }));
     }
 }
-//# sourceMappingURL=TrackBlockFactory.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/Helper.js

@@ -20,4 +20,3 @@ export var Helper;
         });
     }
 })(Helper || (Helper = {}));
-//# sourceMappingURL=Helper.js.map

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools.js

@@ -1,6 +1,6 @@
 import { __awaiter } from "tslib";
 import { AnnotationCollector } from "../../../../RcsbCollectTools/AnnotationCollector/AnnotationCollector";
-import { SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { SequenceReference, Source } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { filter, interfaceAnnotations } from "../../../../RcsbFvWeb/RcsbFvModule/RcsbFvInterface";
 import * as rcm from "../../../../RcsbAnnotationConfig/RcsbResidueConfig.ac.json";
 import { AnnotationBlockManager } from "../../../../RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager";
@@ -53,7 +53,7 @@ export var ResidueChartTools;
             const annotationsRequestContext = {
                 queryId: instanceId,
                 reference: SequenceReference.PdbInstance,
-                sources: [AnnotationReference.PdbEntity, AnnotationReference.PdbInstance, AnnotationReference.Uniprot, AnnotationReference.PdbInterface],
+                sources: [Source.PdbEntity, Source.PdbInstance, Source.Uniprot, Source.PdbInterface],
                 annotationGenerator: interfaceAnnotations,
                 annotationFilter: filter
             };
@@ -85,4 +85,3 @@ export var ResidueChartTools;
     const annotationCollector = new AnnotationCollector();
     const alignmentCollector = new AlignmentCollector();
 })(ResidueChartTools || (ResidueChartTools = {}));
-//# sourceMappingURL=ResidueChartTools.js.map

package/lib/RcsbQueries/Borrego/.graphqlconfig

@@ -0,0 +1,15 @@
+{
+  "name": "Untitled GraphQL Schema",
+  "schemaPath": "schema.graphql",
+  "extensions": {
+    "endpoints": {
+      "Default GraphQL Endpoint": {
+        "url": "https://1d-coordinates.rcsb.org/graphql",
+        "headers": {
+          "user-agent": "JS GraphQL"
+        },
+        "introspect": false
+      }
+    }
+  }
+}

package/lib/RcsbQueries/Borrego/QueryAlignments.graphql

@@ -1,12 +1,12 @@
-query QueryAlignment($queryId: String!, $from: SequenceReference!, $to:SequenceReference!, $range:[Int!]){
-    alignments(
+query QueryAlignment($queryId: String!, $from: SequenceReference, $to:SequenceReference, $range:[Int]){
+    alignment(
         queryId:$queryId
         from:$from
         to:$to
         range:$range
     ){
         query_sequence
-        target_alignments {
+        target_alignment {
             target_id
             orientation
             target_sequence

package/lib/RcsbQueries/Borrego/QueryAnnotations.graphql

@@ -1,10 +1,4 @@
-query QueryAnnotations(
-    $queryId: String!,
-    $reference: SequenceReference!,
-    $sources:[AnnotationReference!]!,
-    $range:[Int!],
-    $filters: [AnnotationFilterInput!]
-){
+query QueryAnnotations($queryId: String!, $reference: SequenceReference, $sources:[Source], $range:[Int], $filters: [FilterInput]){
     annotations(
         queryId:$queryId
         reference:$reference