@rcsb/rcsb-saguaro-app 6.3.6 → 6.3.7-dev-js-seqcoord.14
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/app.js +1 -1
- package/build/app.js.LICENSE.txt +14 -19
- package/build/constants.js +1 -1
- package/build/plot.js +1 -1
- package/build/plot.js.LICENSE.txt +18 -23
- package/build/worker.js +1 -1
- package/lib/ExternalResources/NcbiData/NcbiGenomeSequenceData.js +1 -0
- package/lib/ExternalResources/NcbiData/NcbiGenomeSequenceData.js.map +1 -0
- package/lib/ExternalResources/NcbiData/NcbiSummary.js +1 -0
- package/lib/ExternalResources/NcbiData/NcbiSummary.js.map +1 -0
- package/lib/RcsbAnnotationConfig/AnnotationConfigInterface.js +1 -0
- package/lib/RcsbAnnotationConfig/AnnotationConfigInterface.js.map +1 -0
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.ac.json +1 -1
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.d.ts +2 -2
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.js +1 -0
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.js.map +1 -0
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConstants.js +1 -0
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConstants.js.map +1 -0
- package/lib/RcsbAnnotationConfig/RcsbDistributionConfig.js +1 -0
- package/lib/RcsbAnnotationConfig/RcsbDistributionConfig.js.map +1 -0
- package/lib/RcsbChartWeb/AbsractChartComponent.js +1 -0
- package/lib/RcsbChartWeb/AbsractChartComponent.js.map +1 -0
- package/lib/RcsbChartWeb/BarChartComponent.js +1 -0
- package/lib/RcsbChartWeb/BarChartComponent.js.map +1 -0
- package/lib/RcsbChartWeb/HistogramChartComponent.d.ts +2 -1
- package/lib/RcsbChartWeb/HistogramChartComponent.js +1 -0
- package/lib/RcsbChartWeb/HistogramChartComponent.js.map +1 -0
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.d.ts +4 -4
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.js +9 -8
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.js.map +1 -0
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.d.ts +4 -4
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.js +1 -0
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.js.map +1 -0
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.d.ts +4 -4
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.js +17 -9
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.js.map +1 -0
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.d.ts +11 -10
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.js +1 -0
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/DataCollectorInterface.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/DataCollectorInterface.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/GroupMemberCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/GroupMemberCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/GroupPropertyCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/GroupPropertyCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/InterfaceInstanceCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/InterfaceInstanceCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleEntityInstancesCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleEntityInstancesCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleInstanceSequencesCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleInstanceSequencesCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.js +2 -1
- package/lib/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector.js.map +1 -0
- package/lib/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.d.ts +7 -7
- package/lib/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.js +1 -0
- package/lib/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.js.map +1 -0
- package/lib/RcsbCollectTools/FeatureTools/FeatureTools.js +1 -0
- package/lib/RcsbCollectTools/FeatureTools/FeatureTools.js.map +1 -0
- package/lib/RcsbExport/FeatureType.d.ts +4 -4
- package/lib/RcsbExport/FeatureType.js +3 -2
- package/lib/RcsbExport/FeatureType.js.map +1 -0
- package/lib/RcsbExport/RcsbFvUI.js +1 -0
- package/lib/RcsbExport/RcsbFvUI.js.map +1 -0
- package/lib/RcsbFvExamples/ChromosomeFv.js +1 -0
- package/lib/RcsbFvExamples/ChromosomeFv.js.map +1 -0
- package/lib/RcsbFvExamples/EntitySummaryFv.js +1 -0
- package/lib/RcsbFvExamples/EntitySummaryFv.js.map +1 -0
- package/lib/RcsbFvExamples/ExternalDataProvider.js +5 -4
- package/lib/RcsbFvExamples/ExternalDataProvider.js.map +1 -0
- package/lib/RcsbFvExamples/GroupHistogram.js +1 -0
- package/lib/RcsbFvExamples/GroupHistogram.js.map +1 -0
- package/lib/RcsbFvExamples/InstanceFv.js +1 -0
- package/lib/RcsbFvExamples/InstanceFv.js.map +1 -0
- package/lib/RcsbFvExamples/InstanceSequenceFv.js +3 -2
- package/lib/RcsbFvExamples/InstanceSequenceFv.js.map +1 -0
- package/lib/RcsbFvExamples/ResidueDistribution.js +1 -0
- package/lib/RcsbFvExamples/ResidueDistribution.js.map +1 -0
- package/lib/RcsbFvExamples/SequenceIdentityGroupAlignmentFv.js +3 -2
- package/lib/RcsbFvExamples/SequenceIdentityGroupAlignmentFv.js.map +1 -0
- package/lib/RcsbFvExamples/SequenceIdentityGroupFv.js +1 -0
- package/lib/RcsbFvExamples/SequenceIdentityGroupFv.js.map +1 -0
- package/lib/RcsbFvExamples/SingleEntitySummaryFv.js +1 -0
- package/lib/RcsbFvExamples/SingleEntitySummaryFv.js.map +1 -0
- package/lib/RcsbFvExamples/TestCollectors.js +1 -0
- package/lib/RcsbFvExamples/TestCollectors.js.map +1 -0
- package/lib/RcsbFvExamples/UniprotAlignmentFv.js +1 -0
- package/lib/RcsbFvExamples/UniprotAlignmentFv.js.map +1 -0
- package/lib/RcsbFvExamples/UniprotEntityInstanceFv.js +1 -0
- package/lib/RcsbFvExamples/UniprotEntityInstanceFv.js.map +1 -0
- package/lib/RcsbFvExamples/UniprotFv.js +1 -0
- package/lib/RcsbFvExamples/UniprotFv.js.map +1 -0
- package/lib/RcsbFvExamples/UniprotGroupFv.js +7 -5
- package/lib/RcsbFvExamples/UniprotGroupFv.js.map +1 -0
- package/lib/RcsbFvExamples/utils/events.js +1 -0
- package/lib/RcsbFvExamples/utils/events.js.map +1 -0
- package/lib/RcsbFvUI/AbstractMenuItemComponent.js +1 -0
- package/lib/RcsbFvUI/AbstractMenuItemComponent.js.map +1 -0
- package/lib/RcsbFvUI/Components/FilterItemComponent.d.ts +2 -1
- package/lib/RcsbFvUI/Components/FilterItemComponent.js +1 -0
- package/lib/RcsbFvUI/Components/FilterItemComponent.js.map +1 -0
- package/lib/RcsbFvUI/Components/ItemComponent.js +1 -0
- package/lib/RcsbFvUI/Components/ItemComponent.js.map +1 -0
- package/lib/RcsbFvUI/Components/PaginationItemComponent.d.ts +3 -2
- package/lib/RcsbFvUI/Components/PaginationItemComponent.js +2 -1
- package/lib/RcsbFvUI/Components/PaginationItemComponent.js.map +1 -0
- package/lib/RcsbFvUI/GroupPfvUI.js +1 -0
- package/lib/RcsbFvUI/GroupPfvUI.js.map +1 -0
- package/lib/RcsbFvUI/Helper/ActionMethods.js +1 -0
- package/lib/RcsbFvUI/Helper/ActionMethods.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvAssemblyBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvAssemblyBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvContextManager.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvContextManager.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvCoreBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvCoreBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvDataProviderBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvDataProviderBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.js +6 -5
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js +5 -4
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.d.ts +2 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvPairwiseAligmentBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvPairwiseAligmentBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js +5 -4
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/ComponentsManager.d.ts +2 -1
- package/lib/RcsbFvWeb/RcsbFvComponents/ComponentsManager.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/ComponentsManager.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/LoaderSpinner.d.ts +2 -2
- package/lib/RcsbFvWeb/RcsbFvComponents/LoaderSpinner.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/LoaderSpinner.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/MountableComponent.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/MountableComponent.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/RcsbTabs.d.ts +3 -3
- package/lib/RcsbFvWeb/RcsbFvComponents/RcsbTabs.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/RcsbTabs.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButton.d.ts +3 -3
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButton.js +6 -3
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButton.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonManager.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonManager.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonTitle.d.ts +2 -2
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonTitle.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonTitle.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.d.ts +6 -6
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.js +3 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.d.ts +4 -4
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockFactoryInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockFactoryInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.d.ts +3 -3
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.d.ts +2 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.js +3 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/BlockManagerInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/BlockManagerInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.d.ts +3 -3
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/RcsbFvTrackDataAnnotationInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/RcsbFvTrackDataAnnotationInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.d.ts +5 -5
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AnnotationsTrackFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AnnotationsTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.d.ts +3 -3
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.d.ts +4 -4
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.d.ts +5 -5
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.d.ts +4 -4
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.d.ts +4 -4
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.js +3 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js +2 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.d.ts +5 -5
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.d.ts +5 -5
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/InstanceSequenceTrackTitleFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/InstanceSequenceTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.d.ts +5 -5
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.d.ts +2 -2
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js +12 -11
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js +30 -23
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts +6 -6
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js +9 -8
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvDataProvider.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvDataProvider.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js +4 -3
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js +31 -45
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js.map +1 -0
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+
{"version":3,"file":"TrackBlockFactory.js","sourceRoot":"","sources":["../../../../../../src/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartFactories/TrackBlockFactoryImpl/TrackBlockFactory.ts"],"names":[],"mappings":"AAIA,OAAO,EAAC,sBAAsB,EAAC,MAAM,4DAA4D,CAAC;AAElG,MAAM,OAAO,iBAAiB;IAI1B,YAAY,kBAA2C;QACnD,IAAI,CAAC,kBAAkB,GAAG,kBAAkB,aAAlB,kBAAkB,cAAlB,kBAAkB,GAAI,IAAI,sBAAsB,EAAE,CAAC;IACjF,CAAC;IAED,cAAc,CAAC,MAA+B;QAC1C,MAAM,QAAQ,GAAwC,IAAI,GAAG,EAAmC,CAAC;QACjG,MAAM,CAAC,OAAO,CAAC,CAAC,CAAA,EAAE;;YACd,MAAM,SAAS,GAAqB,IAAI,CAAC,kBAAkB,CAAC,YAAY,CAAC,CAAC,CAAC,KAAK,EAAE,CAAC,CAAC;YACpF,IAAG,CAAC,SAAS;gBACT,OAAO;YACX,IAAG,CAAC,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC;gBACvB,QAAQ,CAAC,GAAG,CAAC,SAAS,EAAE,EAAE,CAAC,CAAC;YAChC,MAAA,QAAQ,CAAC,GAAG,CAAC,SAAS,CAAC,0CAAE,IAAI,CAAC,CAAC,CAAC,CAAC;QACrC,CAAC,CAAC,CAAC;QACH,OAAO,KAAK,CAAC,IAAI,CAAC,QAAQ,CAAC,OAAO,EAAE,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA,EAAE,CAAA,CAAC,EAAC,SAAS,EAAC,CAAC,CAAC,CAAC,CAAC,EAAC,MAAM,EAAC,CAAC,CAAC,CAAC,CAAC,EAAC,CAAC,CAAC,CAAC;IACjF,CAAC;CAEJ"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"Helper.js","sourceRoot":"","sources":["../../../../../src/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/Helper.ts"],"names":[],"mappings":"AAEA,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AAEpE,MAAM,KAAW,MAAM,CA8BtB;AA9BD,WAAiB,MAAM;IAGnB,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;IAEhD,SAAgB,WAAW,CAAC,MAA4B;QACpD,MAAM,UAAU,GAAa,KAAK,CAAC,IAAI,CAAC,IAAI,GAAG,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAA,EAAE,CAAA,EAAE,CAAC,SAAS,CAAC,CAAC,CAAC,CAAC;QAC/E,OAAO,UAAU,CAAC,GAAG,CAAC,IAAI,CAAA,EAAE,CAAA,CACxB,cAAc,CAAC,MAAM,CAAC,MAAM,CAAC,EAAE,CAAA,EAAE,CAAA,EAAE,CAAC,SAAS,IAAI,IAAI,CAAC,CAAC,CAC1D,CAAC,CAAC;IACP,CAAC;IALe,kBAAW,cAK1B,CAAA;IAED,SAAS,cAAc,CAAC,MAA4B;QAChD,uCACO,MAAM,CAAC,CAAC,CAAC,KACZ,IAAI,EAAE,SAAS,CAAC,MAAM,CAAC,GAAG,CAAC,EAAE,CAAA,EAAE,CAAA,EAAE,CAAC,IAAI,CAAC,CAAC,IAAI,EAAE,CAAC,IACjD;IACN,CAAC;IAED,SAAS,SAAS,CAAC,IAA4B;QAC3C,MAAM,MAAM,GAAsB,KAAK,CAAC,IAAI,CAAC,IAAI,GAAG,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAA,EAAE,CAAA,CAAC,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC;QAC5E,OAAO,MAAM,CAAC,GAAG,CAAC,KAAK,CAAA,EAAE;;YACrB,MAAM,CAAC,GAAG,IAAI,CAAC,IAAI,CAAC,CAAC,CAAA,EAAE,CAAA,CAAC,CAAC,KAAK,KAAG,KAAK,CAAC,CAAC;YACxC,aAAa,CAAC,CAAC,CAAC,CAAC;YACjB,uCACO,CAAC,KACJ,UAAU,EAAE,MAAA,MAAA,IAAI,CAAC,MAAM,CAAC,CAAC,CAAA,EAAE,CAAA,CAAC,CAAC,KAAK,KAAG,KAAK,CAAC,0CAAE,MAAM,CAAC,CAAC,IAAI,EAAC,IAAI,EAAC,EAAE,CAAA,CAAC,IAAI,GAAC,IAAI,CAAC,UAAU,CAAC,EAAC,CAAC,CAAC,mCAAI,CAAC,IAClG;QACL,CAAC,CAAC,CAAC;IACP,CAAC;AACL,CAAC,EA9BgB,MAAM,KAAN,MAAM,QA8BtB"}
|
package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools.js
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import { __awaiter } from "tslib";
|
|
2
2
|
import { AnnotationCollector } from "../../../../RcsbCollectTools/AnnotationCollector/AnnotationCollector";
|
|
3
|
-
import { SequenceReference,
|
|
3
|
+
import { SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
4
4
|
import { filter, interfaceAnnotations } from "../../../../RcsbFvWeb/RcsbFvModule/RcsbFvInterface";
|
|
5
5
|
import * as rcm from "../../../../RcsbAnnotationConfig/RcsbResidueConfig.ac.json";
|
|
6
6
|
import { AnnotationBlockManager } from "../../../../RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager";
|
|
@@ -53,7 +53,7 @@ export var ResidueChartTools;
|
|
|
53
53
|
const annotationsRequestContext = {
|
|
54
54
|
queryId: instanceId,
|
|
55
55
|
reference: SequenceReference.PdbInstance,
|
|
56
|
-
sources: [
|
|
56
|
+
sources: [AnnotationReference.PdbEntity, AnnotationReference.PdbInstance, AnnotationReference.Uniprot, AnnotationReference.PdbInterface],
|
|
57
57
|
annotationGenerator: interfaceAnnotations,
|
|
58
58
|
annotationFilter: filter
|
|
59
59
|
};
|
|
@@ -85,3 +85,4 @@ export var ResidueChartTools;
|
|
|
85
85
|
const annotationCollector = new AnnotationCollector();
|
|
86
86
|
const alignmentCollector = new AlignmentCollector();
|
|
87
87
|
})(ResidueChartTools || (ResidueChartTools = {}));
|
|
88
|
+
//# sourceMappingURL=ResidueChartTools.js.map
|
package/lib/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"ResidueChartTools.js","sourceRoot":"","sources":["../../../../../src/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools.ts"],"names":[],"mappings":";AAAA,OAAO,EAAC,mBAAmB,EAAC,MAAM,sEAAsE,CAAC;AAMzG,OAAO,EAGH,iBAAiB,EACjB,mBAAmB,EACtB,MAAM,+DAA+D,CAAC;AACvE,OAAO,EAAC,MAAM,EAAE,oBAAoB,EAAC,MAAM,oDAAoD,CAAC;AAYhG,OAAO,KAAK,GAAG,MAAM,4DAA4D,CAAC;AAClF,OAAO,EACH,sBAAsB,EACzB,MAAM,8FAA8F,CAAC;AACtG,OAAO,EACH,6BAA6B,EAChC,MAAM,8FAA8F,CAAC;AACtG,OAAO,EAAC,oBAAoB,EAAC,MAAM,uDAAuD,CAAC;AAC3F,OAAO,EAAC,iBAAiB,EAAC,MAAM,kEAAkE,CAAC;AACnG,OAAO,EACH,wBAAwB,EAC3B,MAAM,kFAAkF,CAAC;AAC1F,OAAO,EAAC,wBAAwB,EAAC,MAAM,gFAAgF,CAAC;AAKxH,OAAO,EAAC,kBAAkB,EAAC,MAAM,oEAAoE,CAAC;AACtG,OAAO,EAAC,qBAAqB,EAAC,MAAM,mDAAmD,CAAC;AACxF,OAAO,EAAC,MAAM,EAAC,MAAM,UAAU,CAAC;AAChC,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AAOpE,MAAM,KAAW,iBAAiB,CAmFjC;AAnFD,WAAiB,iBAAiB;IAE9B,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;IAEhD,SAAsB,sBAAsB,CAAC,YAAmC;;YAC5E,QAAQ,YAAY,CAAC,WAAW,EAAC,CAAC;gBAC9B,KAAK,OAAO;oBACR,OAAO,MAAM,cAAc,CAAC,YAAY,CAAC,MAAM,CAAC,CAAA;gBACpD,KAAK,UAAU;oBACX,OAAO,EAAE,CAAC;gBACd,KAAK,UAAU;oBACX,OAAO,MAAM,iBAAiB,CAAC,YAAY,CAAC,MAAM,CAAC,CAAA;gBACvD,KAAK,QAAQ;oBACT,OAAO,EAAE,CAAC;YAClB,CAAC;QACL,CAAC;KAAA;IAXqB,wCAAsB,yBAW3C,CAAA;IAED,SAAe,cAAc,CAAC,OAAe;;YACzC,MAAM,WAAW,GAAa,CAAC,MAAM,qBAAqB,CAAC,kBAAkB,CAAC,OAAO,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA,EAAE,CAAA,KAAK,CAAC,IAAI,CAAC,CAAC,CAAC,gBAAgB,CAAC,MAAM,EAAE,CAAC,CAAC,IAAI,EAAE,CAAC,CAAC,IAAI,EAAE,CAAA;YACrJ,IAAI,MAAM,GAAyB,EAAE,CAAC;YACtC,KAAI,MAAM,EAAE,IAAI,WAAW,EAAC,CAAC;gBACzB,MAAM,GAAG,MAAM,CAAC,MAAM,CAAC,MAAM,iBAAiB,CAAC,EAAE,CAAC,CAAC,CAAA;YACvD,CAAC;YACD,OAAO,MAAM,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;QACtC,CAAC;KAAA;IAED,SAAe,iBAAiB,CAAC,UAAiB;;;YAC9C,MAAM,uBAAuB,GAA8B;gBACvD,OAAO,EAAE,UAAU;gBACnB,IAAI,EAAE,iBAAiB,CAAC,WAAW;gBACnC,EAAE,EAAE,iBAAiB,CAAC,WAAW;aACpC,CAAC;YACF,MAAM,iBAAiB,GAAuB,MAAM,kBAAkB,CAAC,OAAO,CAAC,uBAAuB,CAAC,CAAC;YAExG,MAAM,yBAAyB,GAA6B;gBACxD,OAAO,EAAE,UAAU;gBACnB,SAAS,EAAE,iBAAiB,CAAC,WAAW;gBACxC,OAAO,EAAE,CAAC,mBAAmB,CAAC,SAAS,EAAE,mBAAmB,CAAC,WAAW,EAAE,mBAAmB,CAAC,OAAO,EAAE,mBAAmB,CAAC,YAAY,CAAC;gBACxI,mBAAmB,EAAE,oBAAoB;gBACzC,gBAAgB,EAAE,MAAM;aAC3B,CAAC;YACF,OAAO,MAAM,SAAS,CAAC,yBAAyB,EAAE,MAAM,mBAAmB,CAAC,OAAO,CAAC,yBAAyB,CAAC,EAAC,MAAA,MAAA,iBAAiB,CAAC,cAAc,0CAAE,MAAM,mCAAI,CAAC,CAAC,CAAC,CAAC;QACnK,CAAC;KAAA;IAED,SAAe,SAAS,CAAC,wBAAkD,EAAE,WAAuC,EAAE,cAAqB;;YACvI,OAAO,kBAAkB,CAAC;gBACtB,WAAW;gBACX,sBAAsB,EAAE,IAAI,sBAAsB,CAC9C,IAAI,6BAA6B,EAAE,EACnC,IAAI,oBAAoB,CAAC,GAA2C,CAAC,CACxE;gBACD,wBAAwB;gBACxB,iBAAiB,EAAE,IAAI,iBAAiB,EAAE;gBAC1C,0BAA0B,EAAE,IAAI,wBAAwB,EAAE;gBAC1D,wBAAwB,EAAE,IAAI,wBAAwB,EAAE;gBACxD,cAAc;aACjB,CAAC,CAAC;QACP,CAAC;KAAA;IAED,SAAe,kBAAkB,CAAC,MAQjC;;YACG,MAAM,MAAM,CAAC,sBAAsB,CAAC,OAAO,CAAC,MAAM,CAAC,wBAAwB,EAAE,MAAM,CAAC,WAAW,CAAC,CAAC;YACjG,OAAO,MAAM,CAAC,iBAAiB,CAAC,cAAc,CAC1C,MAAM,CAAC,sBAAsB,CAAC,SAAS,EAAE,CAC5C,CAAC,GAAG,CAAC,KAAK,CAAA,EAAE,CAAA,CACT,MAAM,CAAC,0BAA0B,CAAC,eAAe,CAAC,KAAK,CAAC,MAAM,EAAC,KAAK,CAAC,SAAS,EAAC,MAAM,CAAC,cAAc,CAAC,CACxG,CAAC,CAAC,GAAG,CAAC,YAAY,CAAA,EAAE;gBACjB,aAAa,CAAC,YAAY,CAAC,CAAA;gBAC3B,OAAO,MAAM,CAAC,wBAAwB,CAAC,QAAQ,CAAC,YAAY,CAAC,CAAA;YACjE,CAAC,CAAC,CAAC;QAEP,CAAC;KAAA;IAED,MAAM,mBAAmB,GAAiC,IAAI,mBAAmB,EAAE,CAAC;IACpF,MAAM,kBAAkB,GAAgC,IAAI,kBAAkB,EAAE,CAAC;AAErF,CAAC,EAnFgB,iBAAiB,KAAjB,iBAAiB,QAmFjC"}
|
|
@@ -1,12 +1,12 @@
|
|
|
1
|
-
query QueryAlignment($queryId: String!, $from: SequenceReference
|
|
2
|
-
|
|
1
|
+
query QueryAlignment($queryId: String!, $from: SequenceReference!, $to:SequenceReference!, $range:[Int!]){
|
|
2
|
+
alignments(
|
|
3
3
|
queryId:$queryId
|
|
4
4
|
from:$from
|
|
5
5
|
to:$to
|
|
6
6
|
range:$range
|
|
7
7
|
){
|
|
8
8
|
query_sequence
|
|
9
|
-
|
|
9
|
+
target_alignments {
|
|
10
10
|
target_id
|
|
11
11
|
orientation
|
|
12
12
|
target_sequence
|
|
@@ -1,4 +1,10 @@
|
|
|
1
|
-
query QueryAnnotations(
|
|
1
|
+
query QueryAnnotations(
|
|
2
|
+
$queryId: String!,
|
|
3
|
+
$reference: SequenceReference!,
|
|
4
|
+
$sources:[AnnotationReference!]!,
|
|
5
|
+
$range:[Int!],
|
|
6
|
+
$filters: [AnnotationFilterInput!]
|
|
7
|
+
){
|
|
2
8
|
annotations(
|
|
3
9
|
queryId:$queryId
|
|
4
10
|
reference:$reference
|
|
@@ -1,42 +1,37 @@
|
|
|
1
|
-
query QueryGroupAlignment(
|
|
2
|
-
|
|
1
|
+
query QueryGroupAlignment(
|
|
2
|
+
$group: GroupReference!,
|
|
3
|
+
$groupId: String!,
|
|
4
|
+
$filter: [String!],
|
|
5
|
+
$first: Int,
|
|
6
|
+
$after: Int
|
|
7
|
+
){
|
|
8
|
+
group_alignments(
|
|
3
9
|
group: $group
|
|
4
10
|
groupId: $groupId
|
|
5
11
|
filter: $filter
|
|
6
12
|
){
|
|
7
13
|
alignment_length
|
|
8
|
-
alignment_logo{
|
|
14
|
+
alignment_logo {
|
|
9
15
|
symbol
|
|
10
16
|
value
|
|
11
17
|
}
|
|
12
18
|
query_sequence
|
|
13
|
-
|
|
14
|
-
|
|
15
|
-
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
19
|
+
target_alignments(first: $first, offset: $after) {
|
|
20
|
+
target_id
|
|
21
|
+
orientation
|
|
22
|
+
target_sequence
|
|
23
|
+
coverage {
|
|
24
|
+
query_coverage
|
|
25
|
+
query_length
|
|
26
|
+
target_coverage
|
|
27
|
+
target_length
|
|
19
28
|
}
|
|
20
|
-
|
|
21
|
-
|
|
22
|
-
|
|
23
|
-
|
|
24
|
-
|
|
25
|
-
|
|
26
|
-
query_coverage
|
|
27
|
-
query_length
|
|
28
|
-
target_coverage
|
|
29
|
-
target_length
|
|
30
|
-
}
|
|
31
|
-
aligned_regions {
|
|
32
|
-
query_begin
|
|
33
|
-
query_end
|
|
34
|
-
target_begin
|
|
35
|
-
target_end
|
|
36
|
-
exon_shift
|
|
37
|
-
}
|
|
38
|
-
}
|
|
39
|
-
cursor
|
|
29
|
+
aligned_regions {
|
|
30
|
+
query_begin
|
|
31
|
+
query_end
|
|
32
|
+
target_begin
|
|
33
|
+
target_end
|
|
34
|
+
exon_shift
|
|
40
35
|
}
|
|
41
36
|
}
|
|
42
37
|
}
|
|
@@ -1,38 +1,32 @@
|
|
|
1
|
-
query QueryGroupAlignmentNoLogo(
|
|
2
|
-
|
|
1
|
+
query QueryGroupAlignmentNoLogo(
|
|
2
|
+
$group: GroupReference!,
|
|
3
|
+
$groupId: String!,
|
|
4
|
+
$filter: [String!],
|
|
5
|
+
$first: Int!,
|
|
6
|
+
$after: Int!){
|
|
7
|
+
group_alignments(
|
|
3
8
|
group: $group
|
|
4
9
|
groupId: $groupId
|
|
5
10
|
filter: $filter
|
|
6
11
|
){
|
|
7
12
|
alignment_length
|
|
8
13
|
query_sequence
|
|
9
|
-
|
|
10
|
-
|
|
11
|
-
|
|
12
|
-
|
|
13
|
-
|
|
14
|
-
|
|
14
|
+
target_alignments(first: $first, offset: $after) {
|
|
15
|
+
target_id
|
|
16
|
+
orientation
|
|
17
|
+
target_sequence
|
|
18
|
+
coverage {
|
|
19
|
+
query_coverage
|
|
20
|
+
query_length
|
|
21
|
+
target_coverage
|
|
22
|
+
target_length
|
|
15
23
|
}
|
|
16
|
-
|
|
17
|
-
|
|
18
|
-
|
|
19
|
-
|
|
20
|
-
|
|
21
|
-
|
|
22
|
-
query_coverage
|
|
23
|
-
query_length
|
|
24
|
-
target_coverage
|
|
25
|
-
target_length
|
|
26
|
-
}
|
|
27
|
-
aligned_regions {
|
|
28
|
-
query_begin
|
|
29
|
-
query_end
|
|
30
|
-
target_begin
|
|
31
|
-
target_end
|
|
32
|
-
exon_shift
|
|
33
|
-
}
|
|
34
|
-
}
|
|
35
|
-
cursor
|
|
24
|
+
aligned_regions {
|
|
25
|
+
query_begin
|
|
26
|
+
query_end
|
|
27
|
+
target_begin
|
|
28
|
+
target_end
|
|
29
|
+
exon_shift
|
|
36
30
|
}
|
|
37
31
|
}
|
|
38
32
|
}
|
|
@@ -1,10 +1,14 @@
|
|
|
1
|
-
query QueryGroupAnnotations(
|
|
1
|
+
query QueryGroupAnnotations(
|
|
2
|
+
$group: GroupReference!,
|
|
3
|
+
$groupId: String!,
|
|
4
|
+
$sources: [AnnotationReference!]!,
|
|
5
|
+
$filters: [AnnotationFilterInput!]
|
|
6
|
+
){
|
|
2
7
|
group_annotations(
|
|
3
8
|
group:$group
|
|
4
9
|
groupId:$groupId
|
|
5
10
|
sources:$sources
|
|
6
11
|
filters:$filters
|
|
7
|
-
histogram:$histogram
|
|
8
12
|
){
|
|
9
13
|
source
|
|
10
14
|
target_id
|
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@@ -0,0 +1,35 @@
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1
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+
query QueryGroupAnnotationsSummary(
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2
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$group: GroupReference!,
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3
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$groupId: String!,
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4
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$sources: [AnnotationReference!]!,
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5
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$filters: [AnnotationFilterInput!]
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6
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){
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7
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group_annotations_summary(
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8
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group:$group
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9
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groupId:$groupId
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10
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sources:$sources
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11
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filters:$filters
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){
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13
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+
source
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14
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+
target_id
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15
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+
features {
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16
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+
type
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17
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+
provenance_source
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18
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+
description
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19
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+
feature_id
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20
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+
name
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21
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+
value
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22
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+
feature_positions {
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23
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+
beg_seq_id
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24
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+
end_seq_id
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25
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+
beg_ori_id
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26
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+
end_ori_id
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27
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+
range_id
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28
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+
open_begin
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29
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+
open_end
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30
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+
value
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31
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+
values
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32
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+
}
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33
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+
}
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34
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+
}
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35
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+
}
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