@rcsb/rcsb-saguaro-app 6.3.5 → 6.3.7-dev-js-seqcoord.14

package/lib/ExternalResources/NcbiData/NcbiGenomeSequenceData.js

@@ -63,3 +63,4 @@ export class NcbiGenomeSequenceData {
 }
 NcbiGenomeSequenceData.urlPrefix = resource.ncbi_genome_sequence.url;
 NcbiGenomeSequenceData.urlSuffix = resource.ncbi_genome_sequence.url_suffix;
+//# sourceMappingURL=NcbiGenomeSequenceData.js.map

package/lib/ExternalResources/NcbiData/NcbiGenomeSequenceData.js.map

@@ -0,0 +1 @@
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package/lib/ExternalResources/NcbiData/NcbiSummary.js

@@ -79,3 +79,4 @@ export class NcbiSummary {
 NcbiSummary.timeout = 3000;
 NcbiSummary.httpTimeout = 10000;
 NcbiSummary.jobTask = null;
+//# sourceMappingURL=NcbiSummary.js.map

package/lib/ExternalResources/NcbiData/NcbiSummary.js.map

@@ -0,0 +1 @@
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package/lib/RcsbAnnotationConfig/AnnotationConfigInterface.js

@@ -1 +1,2 @@
 export {};
+//# sourceMappingURL=AnnotationConfigInterface.js.map

package/lib/RcsbAnnotationConfig/AnnotationConfigInterface.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AnnotationConfigInterface.js","sourceRoot":"","sources":["../../src/RcsbAnnotationConfig/AnnotationConfigInterface.ts"],"names":[],"mappings":""}

package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.ac.json

@@ -96,6 +96,8 @@
         "RAMACHANDRAN_OUTLIER",
         "ANGLE_OUTLIER",
         "BOND_OUTLIER",
+        "PLANE_OUTLIERS",
+        "CHIRAL_OUTLIERS",
         "ROTAMER_OUTLIER",
         "RSRZ_OUTLIER",
         "RSCC_OUTLIER",
@@ -103,6 +105,21 @@
         "MOGUL_ANGLE_OUTLIER",
         "MOGUL_BOND_OUTLIER",
         "STEREO_OUTLIER",
+        "NATOMS_EDS",
+        "OWAB",
+        "AVERAGE_OCCUPANCY",
+        "CLASHES",
+        "SYMM_CLASHES",
+        "ANGLE_OUTLIERS",
+        "BOND_OUTLIERS",
+        "MOGUL_BOND_OUTLIERS",
+        "MOGUL_ANGLE_OUTLIERS",
+        "MOGUL_TORSION_OUTLIERS",
+        "MOGUL_RING_OUTLIERS",
+        "RSRZ",
+        "RSR",
+        "RSCC",
+        "Q_SCORE",
         "CIS_PEPTIDE",
         "LIGAND_INTERACTION",
         "LIGAND_COVALENT_LINKAGE",
@@ -702,54 +719,117 @@
             "title": "pLDDT"
         }, {
             "type": "RSCC",
-            "ignore": true
+            "display": "block-area",
+            "color": {
+                "colors": "#9867c5",
+                "thresholds": [0.00001, 0.2, 0.4, 0.6, 0.8]
+            },
+            "title": "RSCC"
         }, {
             "type": "RSRZ",
-            "ignore": true
+            "display": "area",
+            "height": 45,
+            "color": {
+                "thresholds": [0],
+                "colors": ["#AA8484", "#84AA84"]
+            },
+            "title": "RSRZ"
         }, {
             "type": "RSR",
-            "ignore": true
+            "display": "block-area",
+            "color": {
+                "colors": "#a35a3f",
+                "thresholds": [0.00001, 0.1, 0.2, 0.3, 0.4, 0.6, 0.8]
+            },
+            "title": "RSR"
         }, {
             "type": "OWAB",
-            "ignore": true
+            "display": "area",
+            "color": "#af5a33",
+            "height": 45,
+            "title": "OCC WT AVG B"
         }, {
             "type": "Q_SCORE",
-            "ignore": true
+            "display": "area",
+            "height": 45,
+            "color": {
+                "thresholds": [0],
+                "colors": ["#8484AA", "#CA9Aa4"]
+            },
+            "title": "Q-SCORE"
         }, {
             "type": "BOND_OUTLIERS",
-            "ignore": true
+            "display": "area",
+            "color": "#33aa33",
+            "height": 45,
+            "title": "BOND OUTLIERS"
         }, {
             "type": "ANGLE_OUTLIERS",
-            "ignore": true
+            "display": "area",
+            "color": "#aa33aa",
+            "height": 45,
+            "title": "ANGLE OUTLIERS"
         }, {
             "type": "CHIRAL_OUTLIERS",
-            "ignore": true
+            "display": "area",
+            "color": "#1a33ca",
+            "height": 45,
+            "title": "CHIRAL OUTLIERS"
         }, {
             "type": "PLANE_OUTLIERS",
-            "ignore": true
+            "display": "area",
+            "color": "#ca1a33",
+            "height": 45,
+            "title": "PLANE OUTLIERS"
         }, {
             "type": "CLASHES",
-            "ignore": true
+            "display": "area",
+            "color": "#cc33cc",
+            "height": 45,
+            "title": "ATOMIC CLASHES"
         }, {
             "type": "SYMM_CLASHES",
-            "ignore": true
+            "display": "area",
+            "color": "#33cccc",
+            "height": 45,
+            "title": "SYMM CLASHES"
         }, {
             "type": "MOGUL_BOND_OUTLIERS",
-            "ignore": true
+            "display": "area",
+            "color": "#4a8a33",
+            "height": 45,
+            "title": "MOGUL BOND OUTLIERS"
         }, {
             "type": "MOGUL_ANGLE_OUTLIERS",
-            "ignore": true
+            "display": "area",
+            "color": "#4a338a",
+            "height": 45,
+            "title": "MOGUL ANGLE OUTLIERS"
         }, {
             "type": "MOGUL_TORSION_OUTLIERS",
-            "ignore": true
+            "display": "area",
+            "color": "#833a44",
+            "height": 45,
+            "title": "MOGUL TORSION OUTLIERS"
         }, {
             "type": "MOGUL_RING_OUTLIERS",
-            "ignore": true
+            "display": "area",
+            "color": "#713a8a",
+            "height": 45,
+            "title": "MOGUL RING OUTLIERS"
         }, {
             "type": "NATOMS_EDS",
-            "ignore": true
+            "display": "area",
+            "color": "#daa520",
+            "height": 45,
+            "title": "EDS ATOMS"
         }, {
             "type": "AVERAGE_OCCUPANCY",
-            "ignore": true
+            "display": "block-area",
+            "color": {
+                "colors": "#ace1af",
+                "thresholds": [0.00001, 0.2, 0.4, 0.6, 0.8]
+            },
+            "title": "AVERAGE OCCUPANCY"
         }]
 }

package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.d.ts

@@ -1,4 +1,4 @@
-import { AnnotationFeatures, Feature } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { SequenceAnnotations, Features } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbFvDisplayTypes } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvDefaultConfigValues";
 import { AnnotationConfigInterface, RcsbAnnotationConfigInterface } from "./AnnotationConfigInterface";
 import { AnnotationRequestContext } from "../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
@@ -19,7 +19,7 @@ export declare class RcsbAnnotationConfig {
     uniprotOrder(): Array<string>;
     instanceOrder(): Array<string>;
     entityOrder(): Array<string>;
-    getAnnotationType(requestConfig: AnnotationRequestContext, ann: AnnotationFeatures, feature: Feature): Promise<string>;
+    getAnnotationType(requestConfig: AnnotationRequestContext, ann: SequenceAnnotations, feature: Features): Promise<string>;
     isMergedType(type: string): boolean;
     getMergeConfig(type: string): RcsbMergedTypesInterface | undefined;
     private addNewType;

package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.js

@@ -181,3 +181,4 @@ class ArraySuffix extends Array {
         return this.length;
     }
 }
+//# sourceMappingURL=RcsbAnnotationConfig.js.map

package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.js.map

@@ -0,0 +1 @@
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package/lib/RcsbAnnotationConfig/RcsbAnnotationConstants.js

@@ -15,3 +15,4 @@ export const RcsbAnnotationConstants = {
         userInput: "USER INPUT"
     }
 };
+//# sourceMappingURL=RcsbAnnotationConstants.js.map

package/lib/RcsbAnnotationConfig/RcsbAnnotationConstants.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"RcsbAnnotationConstants.js","sourceRoot":"","sources":["../../src/RcsbAnnotationConfig/RcsbAnnotationConstants.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,GAAG,MAAM,gCAAgC,CAAC;AAGtD,MAAM,mBAAmB,GAAmC,GAAG,CAAC;AAChE,MAAM,CAAC,MAAM,uBAAuB,GAAG;IACnC,mBAAmB,EAAC;QAChB,QAAQ,EAA8B,mBAAoB,CAAC,qBAAqB,CAAC,SAAS;QAC1F,OAAO,EAA8B,mBAAoB,CAAC,qBAAqB,CAAC,QAAQ;QACxF,QAAQ,EAA8B,mBAAoB,CAAC,qBAAqB,CAAC,QAAQ;QACzF,GAAG,EAA8B,mBAAoB,CAAC,qBAAqB,CAAC,GAAG;KAClF;IACD,cAAc,EAAE;QACZ,GAAG,EAAE,KAAK;QACV,GAAG,EAAE,KAAK;QACV,MAAM,EAAE,QAAQ;QAChB,QAAQ,EAAE,UAAU;QACpB,SAAS,EAAE,YAAY;KAC1B;CACJ,CAAC"}

package/lib/RcsbAnnotationConfig/RcsbDistributionConfig.js

@@ -29,3 +29,4 @@ export class RcsbDistributionConfig {
         });
     }
 }
+//# sourceMappingURL=RcsbDistributionConfig.js.map

package/lib/RcsbAnnotationConfig/RcsbDistributionConfig.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"RcsbDistributionConfig.js","sourceRoot":"","sources":["../../src/RcsbAnnotationConfig/RcsbDistributionConfig.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,GAAG,MAAM,kCAAkC,CAAC;AAOxD,MAAM,kBAAkB,GAAoC,GAAU,CAAC;AACvE,MAAM,OAAO,sBAAsB;IAO/B,YAAY,MAAuC,kBAAkB;QAJ7D,qBAAgB,GAAuB,IAAI,GAAG,EAAkB,CAAC;QACjE,gBAAW,GAAyC,IAAI,GAAG,EAAoC,CAAC;QAChG,gBAAW,GAA8C,IAAI,GAAG,EAAyC,CAAC;QAG9G,IAAI,CAAC,kBAAkB,GAAG,GAAG,CAAC;QAC9B,IAAI,CAAC,aAAa,EAAE,CAAC;IACzB,CAAC;IAED,YAAY,CAAC,SAAiB;QAC1B,OAAO,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;IAChD,CAAC;IAED,cAAc,CAAC,IAAY;QACvB,OAAO,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IACtC,CAAC;IAED,cAAc,CAAC,IAAW;QACtB,OAAO,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,IAAI,CAAC,CAAC;IACtC,CAAC;IAEO,aAAa;QACjB,IAAI,CAAC,kBAAkB,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAA,EAAE;YAC5C,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,EAAC,EAAE,CAAC,CAAC;YACjC,EAAE,CAAC,SAAS,CAAC,OAAO,CAAC,IAAI,CAAA,EAAE;gBACvB,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,IAAI,EAAC,EAAE,CAAC,IAAI,CAAC,CAAC;YAC5C,CAAC,CAAC,CAAA;QACN,CAAC,CAAC,CAAC;QACH,IAAI,CAAC,kBAAkB,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,CAAA,EAAE;YAC5C,IAAI,CAAC,WAAW,CAAC,GAAG,CAAC,EAAE,CAAC,IAAI,EAAC,EAAE,CAAC,CAAC;QACrC,CAAC,CAAC,CAAC;IACP,CAAC;CAEJ"}

package/lib/RcsbChartWeb/AbsractChartComponent.js

@@ -46,3 +46,4 @@ export class AbstractChartComponent extends React.Component {
         }, x);
     }
 }
+//# sourceMappingURL=AbsractChartComponent.js.map

package/lib/RcsbChartWeb/AbsractChartComponent.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AbsractChartComponent.js","sourceRoot":"","sources":["../../src/RcsbChartWeb/AbsractChartComponent.tsx"],"names":[],"mappings":"AAAA,OAAO,EAAC,cAAc,EAAe,MAAM,MAAM,CAAC;AAElD,OAAO,KAAK,MAAM,OAAO,CAAC;AAK1B,OAAO,EAAC,yBAAyB,EAAC,MAAM,8EAA8E,CAAC;AAevH,MAAM,OAAgB,sBAAuB,SAAQ,KAAK,CAAC,SAAsD;IAAjH;;QAIa,UAAK,GAAuB;YACjC,IAAI,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI;YACrB,WAAW,EAAE,IAAI,CAAC,KAAK,CAAC,WAAW;SACtC,CAAA;IA2CL,CAAC;IAzCG,iBAAiB;QACb,IAAI,CAAC,SAAS,EAAE,CAAC;IACrB,CAAC;IAED,oBAAoB;QAChB,IAAI,CAAC,WAAW,EAAE,CAAC;IACvB,CAAC;IAEO,WAAW;;QACf,MAAA,MAAA,IAAI,CAAC,YAAY,0CAAE,WAAW,kDAAI,CAAC;IACvC,CAAC;IAEO,SAAS;QACb,IAAI,CAAC,YAAY,GAAG,yBAAyB,CAAC,gBAAgB,CAC1D,CAAC,CAAuB,EAAC,EAAE;YACvB,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC;QAC3B,CAAC,CACJ,CAAC;IACN,CAAC;IAEO,cAAc,CAAC,MAA6B;QAChD,IAAG,CAAC,MAAM,CAAC,QAAQ;YACf,OAAO;QACX,IAAG,IAAI,CAAC,KAAK,CAAC,aAAa,KAAK,MAAM,CAAC,aAAa,EAAC,CAAC;YAClD,IAAI,CAAC,WAAW,CAAC,MAAM,CAAC,CAAC;QAC7B,CAAC;aAAI,CAAC;YACF,IAAI,CAAC,WAAW,CAAC,MAAM,EAAE,EAAE,CAAC,CAAA;QAChC,CAAC;IACL,CAAC;IAEO,WAAW,CAAC,MAA6B,EAAC,CAAS;;QACvD,MAAA,IAAI,CAAC,iBAAiB,0CAAE,WAAW,EAAE,CAAC;QACtC,IAAI,CAAC,iBAAiB,GAAG,cAAc,CAAC,QAAQ,CAAC,GAAE,EAAE;YACjD,MAAM,IAAI,GAAG,MAAM,CAAC,QAAQ,CAAC,GAAG,CAAC,IAAI,CAAC,KAAK,CAAC,aAAa,CAAC,CAAC;YAC3D,IAAG,IAAI;gBACH,IAAI,CAAC,QAAQ,CAAC;oBACV,IAAI;iBACP,CAAC,CAAC;QACX,CAAC,EAAE,CAAC,CAAE,CAAC;IACX,CAAC;CAEJ"}

package/lib/RcsbChartWeb/BarChartComponent.js

@@ -8,3 +8,4 @@ export class BarChartComponent extends AbstractChartComponent {
         return (_jsx(ChartComponent, { data: this.state.data, chartComponentImplementation: ChartJsBarComponent, dataProvider: new BarChartDataProvider(), chartConfig: this.props.chartConfig }));
     }
 }
+//# sourceMappingURL=BarChartComponent.js.map

package/lib/RcsbChartWeb/BarChartComponent.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"BarChartComponent.js","sourceRoot":"","sources":["../../src/RcsbChartWeb/BarChartComponent.tsx"],"names":[],"mappings":";AAAA,OAAO,EAAC,sBAAsB,EAAC,MAAM,yBAAyB,CAAC;AAC/D,OAAO,EAAC,cAAc,EAAC,MAAM,yDAAyD,CAAC;AACvF,OAAO,EAAC,oBAAoB,EAAC,MAAM,kEAAkE,CAAC;AACtG,OAAO,EACH,mBAAmB,EACtB,MAAM,0FAA0F,CAAC;AAElG,MAAM,OAAO,iBAAkB,SAAQ,sBAAsB;IAEzD,MAAM;QACF,OAAO,CAAC,KAAC,cAAc,IACnB,IAAI,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,EACrB,4BAA4B,EAAE,mBAAmB,EACjD,YAAY,EAAG,IAAI,oBAAoB,EAAE,EACzC,WAAW,EAAE,IAAI,CAAC,KAAK,CAAC,WAAW,GACrC,CAAC,CAAC;IACR,CAAC;CACJ"}

package/lib/RcsbChartWeb/HistogramChartComponent.d.ts

@@ -1,4 +1,5 @@
 import { AbstractChartComponent } from "./AbsractChartComponent";
+import { ReactNode } from "react";
 export declare class HistogramChartComponent extends AbstractChartComponent {
-    render(): JSX.Element;
+    render(): ReactNode;
 }

package/lib/RcsbChartWeb/HistogramChartComponent.js

@@ -8,3 +8,4 @@ export class HistogramChartComponent extends AbstractChartComponent {
         return (_jsx(ChartComponent, { data: this.state.data.map(d => d.map(d => { var _a, _b; return (Object.assign(Object.assign({}, d), { label: (parseFloat(d.label.toString()) + ((_b = (_a = this.props.chartConfig) === null || _a === void 0 ? void 0 : _a.histogramBinIncrement) !== null && _b !== void 0 ? _b : 0) * 0.5) })); })), chartComponentImplementation: ChartJsHistogramComponent, dataProvider: new HistogramChartDataProvider(), chartConfig: this.props.chartConfig }));
     }
 }
+//# sourceMappingURL=HistogramChartComponent.js.map

package/lib/RcsbChartWeb/HistogramChartComponent.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"HistogramChartComponent.js","sourceRoot":"","sources":["../../src/RcsbChartWeb/HistogramChartComponent.tsx"],"names":[],"mappings":";AAAA,OAAO,EAAC,sBAAsB,EAAC,MAAM,yBAAyB,CAAC;AAC/D,OAAO,EAAC,cAAc,EAAC,MAAM,yDAAyD,CAAC;AACvF,OAAO,EAAC,0BAA0B,EAAC,MAAM,wEAAwE,CAAC;AAClH,OAAO,EACH,yBAAyB,EAC5B,MAAM,gGAAgG,CAAC;AAGxG,MAAM,OAAO,uBAAwB,SAAQ,sBAAsB;IAE/D,MAAM;QACF,OAAO,CAAC,KAAC,cAAc,IACnB,IAAI,EAAE,IAAI,CAAC,KAAK,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAA,EAAE,CAAA,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA,EAAE,eAAA,OAAA,iCAAK,CAAC,KAAE,KAAK,EAAE,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,CAAC,QAAQ,EAAE,CAAC,GAAG,CAAC,MAAA,MAAA,IAAI,CAAC,KAAK,CAAC,WAAW,0CAAE,qBAAqB,mCAAI,CAAC,CAAC,GAAC,GAAG,CAAC,IAAE,CAAA,EAAA,CAAC,CAAC,EACpJ,4BAA4B,EAAE,yBAAyB,EACvD,YAAY,EAAE,IAAI,0BAA0B,EAAE,EAC9C,WAAW,EAAE,IAAI,CAAC,KAAK,CAAC,WAAW,GACrC,CAAC,CAAC;IACR,CAAC;CACJ"}

package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.d.ts

@@ -1,6 +1,6 @@
 import { AlignmentCollectConfig, AlignmentCollectorInterface } from "./AlignmentCollectorInterface";
 import { RcsbClient } from "../../RcsbGraphQL/RcsbClient";
-import { AlignmentResponse } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { SequenceAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 export declare class AlignmentCollector implements AlignmentCollectorInterface {
     private requestStatus;
     readonly rcsbFvQuery: RcsbClient;
@@ -8,10 +8,10 @@ export declare class AlignmentCollector implements AlignmentCollectorInterface {
     private alignmentResponse;
     private readonly alignmentResponseSubject;
     private readonly alignmentLengthSubject;
-    collect(requestConfig: AlignmentCollectConfig, filter?: Array<string>): Promise<AlignmentResponse>;
+    collect(requestConfig: AlignmentCollectConfig, filter?: Array<string>): Promise<SequenceAlignments>;
     getTargets(): Promise<Array<string>>;
-    getAlignment(): Promise<AlignmentResponse>;
+    getAlignment(): Promise<SequenceAlignments>;
     getAlignmentLength(): Promise<number>;
-    requestAlignment(requestConfig: AlignmentCollectConfig): Promise<AlignmentResponse>;
+    requestAlignment(requestConfig: AlignmentCollectConfig): Promise<SequenceAlignments>;
     private complete;
 }

package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.js

@@ -14,15 +14,15 @@ export class AlignmentCollector {
     }
     collect(requestConfig, filter) {
         return __awaiter(this, void 0, void 0, function* () {
-            var _a, _b, _c, _d, _e, _f;
+            var _a, _b;
             this.requestStatus = "pending";
             this.alignmentResponse = yield this.requestAlignment(requestConfig);
-            const targetAlignment = (_b = (_a = this.alignmentResponse) === null || _a === void 0 ? void 0 : _a.target_alignment) !== null && _b !== void 0 ? _b : (_e = (_d = (_c = this.alignmentResponse) === null || _c === void 0 ? void 0 : _c.target_alignment_subset) === null || _d === void 0 ? void 0 : _d.edges) === null || _e === void 0 ? void 0 : _e.map(e => e === null || e === void 0 ? void 0 : e.node);
+            const targetAlignment = (_a = this.alignmentResponse) === null || _a === void 0 ? void 0 : _a.target_alignments;
             if (targetAlignment) {
                 assertElementListDefined(targetAlignment);
-                this.alignmentResponse.target_alignment = !filter ? targetAlignment : targetAlignment === null || targetAlignment === void 0 ? void 0 : targetAlignment.filter(ta => { var _a; return filter.includes((_a = ta === null || ta === void 0 ? void 0 : ta.target_id) !== null && _a !== void 0 ? _a : "not-included"); });
+                this.alignmentResponse.target_alignments = !filter ? targetAlignment : targetAlignment === null || targetAlignment === void 0 ? void 0 : targetAlignment.filter(ta => { var _a; return filter.includes((_a = ta === null || ta === void 0 ? void 0 : ta.target_id) !== null && _a !== void 0 ? _a : "not-included"); });
             }
-            this.alignmentResponse = typeof ((_f = requestConfig.externalTrackBuilder) === null || _f === void 0 ? void 0 : _f.filterAlignments) === "function" ? yield requestConfig.externalTrackBuilder.filterAlignments({ alignments: this.alignmentResponse }) : this.alignmentResponse;
+            this.alignmentResponse = typeof ((_b = requestConfig.externalTrackBuilder) === null || _b === void 0 ? void 0 : _b.filterAlignments) === "function" ? yield requestConfig.externalTrackBuilder.filterAlignments({ alignments: this.alignmentResponse }) : this.alignmentResponse;
             this.complete();
             return this.alignmentResponse;
         });
@@ -32,7 +32,7 @@ export class AlignmentCollector {
             return new Promise((resolve, reject) => {
                 var _a, _b;
                 if (this.requestStatus === "complete") {
-                    const targetIds = (_b = (_a = this.alignmentResponse) === null || _a === void 0 ? void 0 : _a.target_alignment) === null || _b === void 0 ? void 0 : _b.map(ta => ta === null || ta === void 0 ? void 0 : ta.target_id);
+                    const targetIds = (_b = (_a = this.alignmentResponse) === null || _a === void 0 ? void 0 : _a.target_alignments) === null || _b === void 0 ? void 0 : _b.map(ta => ta === null || ta === void 0 ? void 0 : ta.target_id);
                     assertElementListDefined(targetIds);
                     resolve(targetIds);
                 }
@@ -68,7 +68,7 @@ export class AlignmentCollector {
     requestAlignment(requestConfig) {
         return __awaiter(this, void 0, void 0, function* () {
             this.requestStatus = "pending";
-            if (requestConfig.queryId) {
+            if (requestConfig.queryId && requestConfig.from && requestConfig.to) {
                 return yield this.rcsbFvQuery.requestAlignment({
                     queryId: requestConfig.queryId,
                     from: requestConfig.from,
@@ -76,7 +76,7 @@ export class AlignmentCollector {
                 });
             }
             else {
-                if (requestConfig.group && requestConfig.page) {
+                if (requestConfig.group && requestConfig.groupId && requestConfig.page) {
                     return yield this.rcsbFvQuery.requestGroupAlignment({
                         group: requestConfig.group,
                         groupId: requestConfig.groupId,
@@ -94,7 +94,7 @@ export class AlignmentCollector {
     complete() {
         var _a, _b, _c, _d, _e;
         this.requestStatus = "complete";
-        const targetIds = (_b = (_a = this.alignmentResponse.target_alignment) === null || _a === void 0 ? void 0 : _a.map(ta => ta === null || ta === void 0 ? void 0 : ta.target_id)) !== null && _b !== void 0 ? _b : [];
+        const targetIds = (_b = (_a = this.alignmentResponse.target_alignments) === null || _a === void 0 ? void 0 : _a.map(ta => ta === null || ta === void 0 ? void 0 : ta.target_id)) !== null && _b !== void 0 ? _b : [];
         assertElementListDefined(targetIds);
         this.targetsSubject.next(targetIds);
         this.alignmentResponseSubject.next(this.alignmentResponse);
@@ -102,3 +102,4 @@ export class AlignmentCollector {
         console.info("Alignment Processing Complete");
     }
 }
+//# sourceMappingURL=AlignmentCollector.js.map

package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.js.map

@@ -0,0 +1 @@
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package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.d.ts

@@ -1,4 +1,4 @@
-import { AlignmentResponse, QueryAlignmentArgs, SequenceReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { SequenceAlignments, QueryAlignmentsArgs, SequenceReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbQueryGroupAlignmentArguments } from "../../RcsbGraphQL/RcsbQueryAlignment";
 import { ExternalTrackBuilderInterface } from "../FeatureTools/ExternalTrackBuilderInterface";
 interface CommonAlignmentInterface {
@@ -10,7 +10,7 @@ interface CommonAlignmentInterface {
     excludeFirstRowLink?: boolean;
 }
 type QueryAlignmentArgsTypes = {
-    [K in keyof QueryAlignmentArgs]: NonNullable<QueryAlignmentArgs[K]>;
+    [K in keyof QueryAlignmentsArgs]: NonNullable<QueryAlignmentsArgs[K]>;
 };
 export interface CollectAlignmentInterface extends QueryAlignmentArgsTypes, CommonAlignmentInterface {
 }
@@ -22,8 +22,8 @@ export interface CollectGroupAlignmentInterface extends RcsbQueryGroupAlignmentA
 export type AlignmentCollectConfig = Partial<CollectAlignmentInterface & CollectGroupAlignmentInterface>;
 export interface AlignmentCollectorInterface {
     getTargets(): Promise<Array<string>>;
-    getAlignment(): Promise<AlignmentResponse>;
+    getAlignment(): Promise<SequenceAlignments>;
     getAlignmentLength(): Promise<number>;
-    collect(requestConfig: AlignmentCollectConfig, filter?: Array<string>): Promise<AlignmentResponse>;
+    collect(requestConfig: AlignmentCollectConfig, filter?: Array<string>): Promise<SequenceAlignments>;
 }
 export {};

package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.js

@@ -1 +1,2 @@
 export {};
+//# sourceMappingURL=AlignmentCollectorInterface.js.map

package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AlignmentCollectorInterface.js","sourceRoot":"","sources":["../../../src/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.ts"],"names":[],"mappings":""}

package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.d.ts

@@ -1,4 +1,4 @@
-import { AnnotationFeatures, Feature } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { SequenceAnnotations, Features } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbClient } from "../../RcsbGraphQL/RcsbClient";
 import { AnnotationRequestContext, AnnotationCollectorInterface } from "./AnnotationCollectorInterface";
 export declare class AnnotationCollector implements AnnotationCollectorInterface {
@@ -8,9 +8,9 @@ export declare class AnnotationCollector implements AnnotationCollectorInterface
     private annotationFeatures;
     private readonly rawFeaturesSubject;
     private readonly annotationFeaturesSubject;
-    collect(requestConfig: AnnotationRequestContext): Promise<Array<AnnotationFeatures>>;
-    getFeatures(): Promise<Array<Feature>>;
-    getAnnotationFeatures(): Promise<Array<AnnotationFeatures>>;
+    collect(requestConfig: AnnotationRequestContext): Promise<Array<SequenceAnnotations>>;
+    getFeatures(): Promise<Array<Features>>;
+    getAnnotationFeatures(): Promise<Array<SequenceAnnotations>>;
     private requestAnnotations;
     private complete;
 }

package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.js

@@ -55,7 +55,22 @@ export class AnnotationCollector {
     }
     requestAnnotations(requestConfig) {
         return __awaiter(this, void 0, void 0, function* () {
-            if (requestConfig.queryId)
+            if (requestConfig.group && requestConfig.groupId && requestConfig.sources)
+                if (requestConfig.isSummary)
+                    return yield this.rcsbFvQuery.requestRcsbPdbGroupAnnotationsSummary({
+                        group: requestConfig.group,
+                        groupId: requestConfig.groupId,
+                        sources: requestConfig.sources,
+                        filters: requestConfig.filters
+                    });
+                else
+                    return yield this.rcsbFvQuery.requestRcsbPdbGroupAnnotations({
+                        group: requestConfig.group,
+                        groupId: requestConfig.groupId,
+                        sources: requestConfig.sources,
+                        filters: requestConfig.filters
+                    });
+            else if (requestConfig.queryId && requestConfig.reference && requestConfig.sources)
                 return yield this.rcsbFvQuery.requestRcsbPdbAnnotations({
                     queryId: requestConfig.queryId,
                     reference: requestConfig.reference,
@@ -63,14 +78,6 @@ export class AnnotationCollector {
                     filters: requestConfig.filters,
                     range: requestConfig.range
                 });
-            else if (requestConfig.group && requestConfig.groupId)
-                return yield this.rcsbFvQuery.requestRcsbPdbGroupAnnotations({
-                    group: requestConfig.group,
-                    groupId: requestConfig.groupId,
-                    sources: requestConfig.sources,
-                    filters: requestConfig.filters,
-                    histogram: requestConfig.histogram
-                });
             throw new Error(`Annotation query error`);
         });
     }
@@ -81,3 +88,4 @@ export class AnnotationCollector {
         console.info("Features Processing Complete");
     }
 }
+//# sourceMappingURL=AnnotationCollector.js.map

package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AnnotationCollector.js","sourceRoot":"","sources":["../../../src/RcsbCollectTools/AnnotationCollector/AnnotationCollector.ts"],"names":[],"mappings":";AAGA,OAAO,EAAC,UAAU,EAAa,MAAM,8BAA8B,CAAC;AAKpE,OAAO,EAAC,OAAO,EAAC,MAAM,MAAM,CAAC;AAC7B,OAAO,EAAC,gBAAgB,EAAC,MAAM,0CAA0C,CAAC;AAE1E,MAAM,OAAO,mBAAmB;IAAhC;QAEa,gBAAW,GAAe,UAAU,CAAC;QACtC,kBAAa,GAAyB,UAAU,CAAC;QAGxC,uBAAkB,GAA6B,IAAI,OAAO,EAAmB,CAAC;QAC9E,8BAAyB,GAAwC,IAAI,OAAO,EAA8B,CAAC;IA0EhI,CAAC;IAxEgB,OAAO,CAAC,aAAuC;;;YACxD,IAAI,CAAC,aAAa,GAAG,SAAS,CAAC;YAC/B,IAAI,CAAC,kBAAkB,GAAG,MAAM,IAAI,CAAC,kBAAkB,CAAC,aAAa,CAAC,CAAC;YACvE,IAAG,OAAO,CAAA,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,mBAAmB,CAAA,KAAK,UAAU,EAAE,CAAC;gBAC1D,MAAM,iBAAiB,GAA+B,MAAM,aAAa,CAAC,mBAAmB,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAA;gBACtH,IAAG,iBAAiB,IAAI,iBAAiB,CAAC,MAAM,CAAC,CAAC,CAAC,EAAC,EAAE,CAAA,CAAC,CAAC,IAAE,IAAI,CAAC,CAAC,CAAC,MAAM,GAAG,CAAC;oBACvE,IAAI,CAAC,kBAAkB,GAAG,IAAI,CAAC,kBAAkB,CAAC,MAAM,CAAC,iBAAiB,CAAC,MAAM,CAAC,CAAC,CAAC,EAAC,EAAE,CAAA,CAAC,CAAC,IAAE,IAAI,CAAC,CAAC,CAAC,CAAC;YAC3G,CAAC;YACD,IAAG,OAAO,CAAA,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,gBAAgB,CAAA,KAAK,UAAU,EAAE,CAAC;gBACvD,IAAI,CAAC,kBAAkB,GAAG,MAAM,aAAa,CAAC,gBAAgB,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAC;YAC5F,CAAC;YACD,IAAG,OAAO,CAAA,MAAA,aAAa,aAAb,aAAa,uBAAb,aAAa,CAAE,oBAAoB,0CAAE,cAAc,CAAA,KAAK,UAAU;gBACxE,IAAI,CAAC,kBAAkB,GAAG,MAAM,aAAa,CAAC,oBAAoB,CAAC,cAAc,CAAC,EAAC,WAAW,EAAC,IAAI,CAAC,kBAAkB,EAAE,WAAW,EAAC,aAAa,CAAC,WAAW,EAAC,CAAC,CAAC;YACpK,IAAI,CAAC,WAAW,GAAG,EAAE,CAAC,MAAM,CAAC,KAAK,CAAC,EAAE,EAAE,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,EAAE,CAAA,EAAE,CAAA,EAAE,CAAC,QAAQ,CAAC,CAAC,CAAC;YACrF,IAAI,CAAC,QAAQ,EAAE,CAAC;YAChB,OAAO,IAAI,CAAC,kBAAkB,CAAC;QACnC,CAAC;KAAA;IAEY,WAAW;;YACpB,OAAO,IAAI,OAAO,CAAkB,CAAC,OAAO,EAAE,MAAM,EAAC,EAAE;gBACnD,IAAG,IAAI,CAAC,aAAa,KAAK,UAAU,EAAC,CAAC;oBAClC,OAAO,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;gBAC9B,CAAC;qBAAI,CAAC;oBACF,gBAAgB,CAAC,mBAAmB,CAAkB,OAAO,EAAE,IAAI,CAAC,kBAAkB,CAAC,CAAC;gBAC5F,CAAC;YACL,CAAC,CAAC,CAAC;QACP,CAAC;KAAA;IAEY,qBAAqB;;YAC9B,OAAO,IAAI,OAAO,CAA6B,CAAC,OAAO,EAAE,MAAM,EAAC,EAAE;gBAC9D,IAAG,IAAI,CAAC,aAAa,KAAK,UAAU,EAAC,CAAC;oBAClC,OAAO,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAC;gBACrC,CAAC;qBAAI,CAAC;oBACF,gBAAgB,CAAC,mBAAmB,CAA6B,OAAO,EAAE,IAAI,CAAC,yBAAyB,CAAC,CAAC;gBAC9G,CAAC;YACL,CAAC,CAAC,CAAA;QACN,CAAC;KAAA;IAEa,kBAAkB,CAAC,aAAuC;;YACpE,IAAG,aAAa,CAAC,KAAK,IAAI,aAAa,CAAC,OAAO,IAAI,aAAa,CAAC,OAAO;gBACpE,IAAG,aAAa,CAAC,SAAS;oBACtB,OAAO,MAAM,IAAI,CAAC,WAAW,CAAC,qCAAqC,CAAC;wBAChE,KAAK,EAAE,aAAa,CAAC,KAAK;wBAC1B,OAAO,EAAE,aAAa,CAAC,OAAO;wBAC9B,OAAO,EAAE,aAAa,CAAC,OAAO;wBAC9B,OAAO,EAAE,aAAa,CAAC,OAAO;qBACjC,CAAC,CAAC;;oBAEH,OAAO,MAAM,IAAI,CAAC,WAAW,CAAC,8BAA8B,CAAC;wBACzD,KAAK,EAAE,aAAa,CAAC,KAAK;wBAC1B,OAAO,EAAE,aAAa,CAAC,OAAO;wBAC9B,OAAO,EAAE,aAAa,CAAC,OAAO;wBAC9B,OAAO,EAAE,aAAa,CAAC,OAAO;qBACjC,CAAC,CAAC;iBACN,IAAG,aAAa,CAAC,OAAO,IAAI,aAAa,CAAC,SAAS,IAAI,aAAa,CAAC,OAAO;gBAC7E,OAAO,MAAM,IAAI,CAAC,WAAW,CAAC,yBAAyB,CAAC;oBACpD,OAAO,EAAE,aAAa,CAAC,OAAO;oBAC9B,SAAS,EAAE,aAAa,CAAC,SAAS;oBAClC,OAAO,EAAE,aAAa,CAAC,OAAO;oBAC9B,OAAO,EAAE,aAAa,CAAC,OAAO;oBAC9B,KAAK,EAAE,aAAa,CAAC,KAAK;iBAC7B,CAAC,CAAC;YACP,MAAM,IAAI,KAAK,CAAC,wBAAwB,CAAC,CAAC;QAC9C,CAAC;KAAA;IAEO,QAAQ;QACZ,IAAI,CAAC,aAAa,GAAG,UAAU,CAAC;QAChC,IAAI,CAAC,yBAAyB,CAAC,IAAI,CAAC,IAAI,CAAC,kBAAkB,CAAC,CAAC;QAC7D,IAAI,CAAC,kBAAkB,CAAC,IAAI,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;QAC/C,OAAO,CAAC,IAAI,CAAC,8BAA8B,CAAC,CAAC;IACjD,CAAC;CAEJ"}

package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.d.ts

@@ -1,4 +1,4 @@
-import { AnnotationFeatures, Feature, QueryAnnotationsArgs, QueryGroup_AnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { SequenceAnnotations, Features, QueryAnnotationsArgs, QueryGroup_AnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { FeaturePositionGaps } from "../../RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager";
 import { ExternalTrackBuilderInterface } from "../FeatureTools/ExternalTrackBuilderInterface";
 import { PolymerEntityInstanceInterface } from "../DataCollectors/PolymerEntityInstancesCollector";
@@ -7,7 +7,7 @@ export type IncreaseAnnotationValueType = (feature: {
     type: string;
     targetId: string;
     positionKey: string;
-    d: Feature;
+    d: Features;
     p: FeaturePositionGaps;
 }) => number;
 export interface AnnotationProcessingInterface {
@@ -19,19 +19,20 @@ export interface CommonAnnotationInterface {
     rcsbContext?: Partial<PolymerEntityInstanceInterface>;
     annotationProcessing?: AnnotationProcessingInterface;
     externalTrackBuilder?: ExternalTrackBuilderInterface;
-    annotationGenerator?(annotations: Array<AnnotationFeatures>): Promise<Array<AnnotationFeatures>>;
-    annotationFilter?(annotations: Array<AnnotationFeatures>): Promise<Array<AnnotationFeatures>>;
-    titleSuffix?(ann: AnnotationFeatures, d: Feature): Promise<string | undefined>;
-    trackTitle?(ann: AnnotationFeatures, d: Feature): Promise<string | undefined>;
-    typeSuffix?(ann: AnnotationFeatures, d: Feature): Promise<string | undefined>;
+    annotationGenerator?(annotations: Array<SequenceAnnotations>): Promise<Array<SequenceAnnotations>>;
+    annotationFilter?(annotations: Array<SequenceAnnotations>): Promise<Array<SequenceAnnotations>>;
+    titleSuffix?(ann: SequenceAnnotations, d: Features): Promise<string | undefined>;
+    trackTitle?(ann: SequenceAnnotations, d: Features): Promise<string | undefined>;
+    typeSuffix?(ann: SequenceAnnotations, d: Features): Promise<string | undefined>;
 }
 export interface AnnotationsCollectConfig extends QueryAnnotationsArgs, CommonAnnotationInterface {
 }
 export interface CollectGroupAnnotationsInterface extends QueryGroup_AnnotationsArgs, CommonAnnotationInterface {
+    isSummary: boolean;
 }
 export type AnnotationRequestContext = Partial<AnnotationsCollectConfig & CollectGroupAnnotationsInterface>;
 export interface AnnotationCollectorInterface {
-    collect(requestConfig: AnnotationsCollectConfig | CollectGroupAnnotationsInterface): Promise<Array<AnnotationFeatures>>;
-    getAnnotationFeatures(): Promise<Array<AnnotationFeatures>>;
-    getFeatures(): Promise<Array<Feature>>;
+    collect(requestConfig: AnnotationsCollectConfig | CollectGroupAnnotationsInterface): Promise<Array<SequenceAnnotations>>;
+    getAnnotationFeatures(): Promise<Array<SequenceAnnotations>>;
+    getFeatures(): Promise<Array<Features>>;
 }

package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.js

@@ -1 +1,2 @@
 export {};
+//# sourceMappingURL=AnnotationCollectorInterface.js.map

package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AnnotationCollectorInterface.js","sourceRoot":"","sources":["../../../src/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.ts"],"names":[],"mappings":""}

package/lib/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.js

@@ -29,3 +29,4 @@ function parseAssemblyInterfaces(assemblyInterfaces) {
         })) !== null && _b !== void 0 ? _b : []
     };
 }
+//# sourceMappingURL=AssemblyInterfacesCollector.js.map

package/lib/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"AssemblyInterfacesCollector.js","sourceRoot":"","sources":["../../../src/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.ts"],"names":[],"mappings":";AAAA,OAAO,EAAC,UAAU,EAAa,MAAM,8BAA8B,CAAC;AAIpE,OAAO,EAAC,UAAU,EAAC,MAAM,oCAAoC,CAAC;AAC9D,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAOhD,MAAM,OAAO,2BAA2B;IAAxC;QAEqB,gBAAW,GAAe,UAAU,CAAC;IAU1D,CAAC;IATgB,OAAO,CAAC,aAAkC;;YACnD,IAAI,CAAC;gBACD,MAAM,MAAM,GAAwB,MAAM,IAAI,CAAC,WAAW,CAAC,yBAAyB,CAAC,aAAa,CAAC,CAAC;gBACpG,OAAO,MAAM,CAAC,GAAG,CAAC,CAAC,CAAA,EAAE,CAAA,uBAAuB,CAAC,CAAC,CAAC,CAAC,CAAC;YACrD,CAAC;YAAA,OAAO,KAAK,EAAE,CAAC;gBACZ,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;gBACnB,MAAM,KAAK,CAAC;YAChB,CAAC;QACL,CAAC;KAAA;CACJ;AAED,SAAS,uBAAuB,CAAC,kBAAgC;;IAC7D,OAAO;QACH,MAAM,EAAE,kBAAkB,CAAC,OAAO;QAClC,YAAY,EAAE,MAAA,MAAA,kBAAkB,CAAC,UAAU,0CAAE,GAAG,CAAC,CAAC,CAAA,EAAE;YAChD,aAAa,CAAC,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,OAAO,CAAC,CAAA;YACzB,OAAO,CAAC,CAAC,OAAO,CAAC;QACrB,CAAC,CAAC,mCAAI,EAAE;KACX,CAAA;AACL,CAAC"}

package/lib/RcsbCollectTools/DataCollectors/DataCollectorInterface.js

@@ -1 +1,2 @@
 export {};
+//# sourceMappingURL=DataCollectorInterface.js.map

package/lib/RcsbCollectTools/DataCollectors/DataCollectorInterface.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"DataCollectorInterface.js","sourceRoot":"","sources":["../../../src/RcsbCollectTools/DataCollectors/DataCollectorInterface.ts"],"names":[],"mappings":""}

package/lib/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.js

@@ -90,3 +90,4 @@ export class EntryAssembliesCollector {
     }
 }
 EntryAssembliesCollector.modelKey = "Model";
+//# sourceMappingURL=EntryAssembliesCollector.js.map

package/lib/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.js.map

@@ -0,0 +1 @@
+{"version":3,"file":"EntryAssembliesCollector.js","sourceRoot":"","sources":["../../../src/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.ts"],"names":[],"mappings":";AAAA,OAAO,EAAC,UAAU,EAAa,MAAM,8BAA8B,CAAC;AAQpE,OAAO,EAAC,UAAU,EAAC,MAAM,oCAAoC,CAAC;AAE9D,IAAO,wBAAwB,GAAG,UAAU,CAAC,wBAAwB,CAAC;AACtE,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAEhD,MAAM,OAAO,wBAAwB;IAArC;QAEqB,gBAAW,GAAe,UAAU,CAAC;IAgF1D,CAAC;IA7EgB,OAAO,CAAC,aAA6B;;YAC9C,IAAG,CAAC;gBACA,MAAM,SAAS,GAAc,MAAM,IAAI,CAAC,WAAW,CAAC,sBAAsB,CAAC,aAAa,CAAC,CAAC;gBAC1F,OAAO,wBAAwB,CAAC,kBAAkB,CAAC,SAAS,CAAC,CAAC;YAClE,CAAC;YAAA,OAAO,KAAK,EAAC,CAAC;gBACX,OAAO,CAAC,GAAG,CAAC,KAAK,CAAC,CAAC;gBACnB,MAAM,KAAK,CAAC;YAChB,CAAC;QACL,CAAC;KAAA;IAEO,MAAM,CAAC,kBAAkB,CAAC,KAAgB;QAC9C,MAAM,GAAG,GAAsD,IAAI,GAAG,EAAgD,CAAC;QACvH,GAAG,CAAC,GAAG,CAAC,wBAAwB,CAAC,QAAQ,EAAE,IAAI,KAAK,EAAkC,CAAC,CAAC;QACxF,MAAM,eAAe,GAAgD,IAAI,GAAG,EAA0C,CAAC;QACvH,IAAG,CAAA,KAAK,aAAL,KAAK,uBAAL,KAAK,CAAE,gBAAgB,aAAY,KAAK,EAAC,CAAC;YACzC,KAAK,CAAC,gBAAgB,CAAC,OAAO,CAAC,MAAM,CAAA,EAAE;gBACnC,IAAG,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,wBAAwB,KAAI,KAAK,CAAC,OAAO,CAAC,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,wBAAwB,CAAC,EAAC,CAAC;oBACpF,wBAAwB,CAAC,MAAM,CAAC,wBAAwB,CAAC,CAAC;oBAC1D,wBAAwB,CAAC,2BAA2B,CAAC,MAAM,CAAC,wBAAwB,EAAE,eAAe,EAAE,GAAG,CAAC,CAAC;gBAChH,CAAC;YACL,CAAC,CAAC,CAAA;QACN,CAAC;QACD,IAAG,CAAA,KAAK,aAAL,KAAK,uBAAL,KAAK,CAAE,UAAU,aAAY,KAAK,EAAC,CAAC;YACnC,KAAK,CAAC,UAAU,CAAC,OAAO,CAAC,QAAQ,CAAA,EAAE;gBAC/B,IAAG,QAAQ;oBACP,wBAAwB,CAAC,4BAA4B,CAAC,QAAQ,EAAE,eAAe,EAAE,GAAG,CAAC,CAAC;YAC9F,CAAC,CAAC,CAAC;QACP,CAAC;QACD,OAAO,GAAG,CAAC;IACf,CAAC;IAEO,MAAM,CAAC,2BAA2B,CAAC,sBAAwD,EAAE,eAA4D,EAAE,GAAsD;QACrN,sBAAsB,CAAC,OAAO,CAAC,QAAQ,CAAA,EAAE;;YACrC,MAAM,MAAM,GAAgB,IAAI,GAAG,EAAU,CAAC;YAC9C,IAAG,CAAA,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,cAAc,0CAAE,2BAA2B,aAAY,KAAK;gBACrE,QAAQ,CAAC,cAAc,CAAC,2BAA2B,CAAC,OAAO,CAAC,EAAE,CAAA,EAAE;oBAC5D,IAAG,OAAO,CAAA,EAAE,aAAF,EAAE,uBAAF,EAAE,CAAE,oBAAoB,CAAA,KAAK,QAAQ,IAAI,EAAE,CAAC,oBAAoB,CAAC,MAAM,GAAG,CAAC;wBACjF,MAAM,CAAC,GAAG,CAAC,EAAE,CAAC,oBAAoB,CAAC,CAAC;gBAC5C,CAAC,CAAC,CAAC;YACP,MAAM,CAAC,GAAG,QAAQ,CAAC,kDAAkD,CAAC;YACtE,aAAa,CAAC,CAAC,CAAC,EAAE,aAAa,CAAC,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,QAAQ,CAAC,EAAE,aAAa,CAAC,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,SAAS,CAAC,EAAE,aAAa,CAAC,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,SAAS,CAAC,EAAE,aAAa,CAAC,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,OAAO,CAAC,EAAE,aAAa,CAAC,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,YAAY,CAAC,EAAE,wBAAwB,CAAC,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,+BAA+B,CAAC,CAAA;YAC/N,aAAa,CAAC,MAAA,MAAA,QAAQ,CAAC,cAAc,0CAAE,WAAW,0CAAE,2BAA2B,CAAC,CAAC;YACjF,aAAa,CAAC,MAAA,QAAQ,CAAC,cAAc,CAAC,KAAK,0CAAE,eAAe,CAAC,mCAAmC,CAAC,CAAC;YAClG,MAAM,CAAC,GAAmC;gBACtC,MAAM,EAAE,QAAQ,CAAC,OAAO;gBACxB,OAAO,EAAE,CAAC,CAAC,QAAQ;gBACnB,QAAQ,EAAE,CAAC,CAAC,SAAS;gBACrB,MAAM,EAAE,CAAC,CAAC,OAAO;gBACjB,MAAM,EAAE,CAAC,CAAC,YAAY;gBACtB,SAAS,EAAE,CAAC,CAAC,+BAA+B;gBAC5C,IAAI,EAAE,MAAA,CAAC,MAAA,MAAA,MAAA,MAAA,MAAA,QAAQ,CAAC,cAAc,0CAAE,mBAAmB,0CAAE,0BAA0B,0CAAE,KAAK,0CAAE,IAAI,CAAC,IAAI,CAAC,mCAAI,MAAA,MAAA,QAAQ,CAAC,cAAc,0CAAE,mBAAmB,0CAAE,gBAAgB,CAAC,mCAAI,IAAI;gBAC7K,QAAQ,EAAC,KAAK,CAAC,IAAI,CAAC,MAAM,CAAC;gBAC3B,kBAAkB,EAAE,MAAA,MAAA,MAAA,QAAQ,CAAC,cAAc,0CAAE,KAAK,0CAAE,eAAe,CAAC,mBAAmB,mCAAI,IAAI;gBAC/F,UAAU,EAAE,MAAA,MAAA,MAAA,MAAA,QAAQ,CAAC,cAAc,0CAAE,KAAK,0CAAE,eAAe,CAAC,mBAAmB,0CAAG,CAAC,CAAC,mCAAI,SAAS;gBACjG,cAAc,EAAE,MAAA,MAAA,QAAQ,CAAC,cAAc,0CAAE,WAAW,0CAAE,2BAA2B;gBACjF,qBAAqB,EAAE,MAAA,MAAA,QAAQ,CAAC,cAAc,CAAC,mBAAmB,0CAAE,cAAc,mCAAI,SAAS;gBAC/F,oBAAoB,EAAE,MAAA,MAAA,QAAQ,CAAC,cAAc,CAAC,KAAK,0CAAE,eAAe,CAAC,gBAAgB,mCAAI,SAAS;gBAClG,iCAAiC,EAAE,QAAQ,CAAC,cAAc,CAAC,KAAK,CAAC,eAAe,CAAC,mCAAwE;aAC5J,CAAC;YACF,MAAA,GAAG,CAAC,GAAG,CAAC,wBAAwB,CAAC,QAAQ,CAAC,0CAAE,IAAI,CAAC,CAAC,CAAC,CAAC;YACpD,IAAG,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,kDAAkD,0CAAE,OAAO;gBACpE,eAAe,CAAC,GAAG,CAAC,MAAA,QAAQ,aAAR,QAAQ,uBAAR,QAAQ,CAAE,kDAAkD,0CAAE,OAAO,EAAE,CAAC,CAAC,CAAC;QACtG,CAAC,CAAC,CAAC;IACP,CAAC;IAEO,MAAM,CAAC,4BAA4B,CAAC,QAAsB,EAAE,eAA4D,EAAE,GAAsD;;QACpL,GAAG,CAAC,GAAG,CAAC,QAAQ,CAAC,mCAAmC,CAAC,WAAW,EAAE,IAAI,KAAK,EAAkC,CAAC,CAAC;QAC/G,MAAA,QAAQ,CAAC,wBAAwB,0CAAE,OAAO,CAAC,WAAW,CAAA,EAAE;;YACpD,MAAA,WAAW,aAAX,WAAW,uBAAX,WAAW,CAAE,YAAY,0CAAE,OAAO,CAAC,MAAM,CAAA,EAAE;;gBACvC,IAAG,CAAC,MAAM;oBACN,OAAM;gBACV,MAAM,CAAC,GAAG,eAAe,CAAC,GAAG,CAAC,MAAM,CAAC,CAAC;gBACtC,IAAG,CAAC;oBACA,MAAA,GAAG,CAAC,GAAG,CAAC,QAAQ,CAAC,mCAAmC,CAAC,WAAW,CAAC,0CAAE,IAAI,CAAC,CAAC,CAAC,CAAA;YAClF,CAAC,CAAC,CAAC;QACP,CAAC,CAAC,CAAA;IACN,CAAC;;AA9Ee,iCAAQ,GAAW,OAAO,AAAlB,CAAmB"}

package/lib/RcsbCollectTools/DataCollectors/GroupMemberCollector.js

@@ -19,3 +19,4 @@ export class GroupMemberCollector {
         });
     }
 }
+//# sourceMappingURL=GroupMemberCollector.js.map