@rcsb/rcsb-saguaro-app 6.2.5-dev-js-seqcoord.6 → 6.2.5-dev-js-seqcoord.7
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
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@@ -58,7 +58,11 @@ function collectNextPage(alignmentRequestContext, alignmentCollector, annotation
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const alignmentResponse = yield rcsbClient.requestGroupAlignment({
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group: alignmentRequestContext.group,
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groupId: alignmentRequestContext.groupId,
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page:
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page: {
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first: alignmentRequestContext.page.first,
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after: alignmentRequestContext.page.after + alignmentRequestContext.page.first
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},
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excludeLogo: true
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});
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const targetList = uniqueTargetList(alignmentResponse);
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if (alignmentRequestContext.groupId) {
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@@ -80,7 +84,7 @@ function uniqueTargetList(alignmentResponse) {
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}
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function collectFeatures(annotationsContext, annotationCollector) {
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return __awaiter(this, void 0, void 0, function* () {
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return yield annotationCollector.collect(buildGroupAnnotationQuery(annotationsContext));
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return yield annotationCollector.collect(Object.assign(Object.assign({}, buildGroupAnnotationQuery(annotationsContext)), { isSummary: false, externalTrackBuilder: annotationsContext.externalTrackBuilder }));
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});
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}
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function buildGroupAnnotationQuery(annotationsContext) {
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@@ -88,7 +92,6 @@ function buildGroupAnnotationQuery(annotationsContext) {
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groupId: annotationsContext.groupId,
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group: GroupReference.SequenceIdentity,
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sources: [AnnotationReference.PdbInstance],
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isSummary: false,
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filters: [{
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source: AnnotationReference.PdbInstance,
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operation: OperationType.Equals,
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@@ -99,8 +102,7 @@ function buildGroupAnnotationQuery(annotationsContext) {
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operation: OperationType.Contains,
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field: FieldName.TargetId,
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values: annotationsContext.targetList
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}]
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externalTrackBuilder: annotationsContext.externalTrackBuilder
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}]
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};
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}
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//# sourceMappingURL=RcsbFvGroupAlignment.js.map
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@@ -1 +1 @@
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{"version":3,"file":"RcsbFvGroupAlignment.js","sourceRoot":"","sources":["../../../src/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.ts"],"names":[],"mappings":";AAEA,OAAO,EAAC,oBAAoB,EAAC,MAAM,wBAAwB,CAAC;AAE5D,OAAO,EAGH,SAAS,EACT,cAAc,EACd,aAAa,EACb,mBAAmB,EACnB,YAAY,EACf,MAAM,+DAA+D,CAAC;AACvE,OAAO,EACH,wBAAwB,EAC3B,MAAM,iFAAiF,CAAC;AAKzF,OAAO,EAAC,UAAU,EAAC,MAAM,oCAAoC,CAAC;AAC9D,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAC/E,OAAO,EAAC,QAAQ,EAAC,MAAM,kCAAkC,CAAC;AAC1D,OAAO,EAAC,qBAAqB,EAAC,MAAM,6CAA6C,CAAC;
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{"version":3,"file":"RcsbFvGroupAlignment.js","sourceRoot":"","sources":["../../../src/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.ts"],"names":[],"mappings":";AAEA,OAAO,EAAC,oBAAoB,EAAC,MAAM,wBAAwB,CAAC;AAE5D,OAAO,EAGH,SAAS,EACT,cAAc,EACd,aAAa,EACb,mBAAmB,EACnB,YAAY,EACf,MAAM,+DAA+D,CAAC;AACvE,OAAO,EACH,wBAAwB,EAC3B,MAAM,iFAAiF,CAAC;AAKzF,OAAO,EAAC,UAAU,EAAC,MAAM,oCAAoC,CAAC;AAC9D,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAC/E,OAAO,EAAC,QAAQ,EAAC,MAAM,kCAAkC,CAAC;AAC1D,OAAO,EAAC,qBAAqB,EAAC,MAAM,6CAA6C,CAAC;AAKlF,OAAO,EAAC,UAAU,EAAC,MAAM,8BAA8B,CAAC;AAExD,MAAM,OAAO,oBAAqB,SAAQ,oBAAoB;IAE1C,cAAc;;;YAC1B,MAAM,WAAW,GAA+B,IAAI,CAAC,WAAW,CAAC;YACjE,aAAa,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,aAAa,CAAC,WAAW,CAAC,KAAK,CAAC,EAAE,aAAa,CAAC,MAAA,WAAW,CAAC,gBAAgB,0CAAE,IAAI,CAAC,CAAC;YACxH,MAAM,uBAAuB,GAAmC;gBAC5D,KAAK,EAAE,WAAW,CAAC,KAAK;gBACxB,OAAO,EAAE,WAAW,CAAC,OAAO;gBAC5B,MAAM,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,eAAe;gBACrD,IAAI,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,IAAI;gBACxC,WAAW,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,WAAW;gBACtD,IAAI,EAAE,WAAW,CAAC,IAAI;gBACtB,EAAE,EAAE,WAAW,CAAC,EAAE;gBAClB,cAAc,EAAC,KAAK;gBACpB,aAAa,EAAC,IAAI;gBAClB,mBAAmB,EAAE,IAAI;gBACzB,cAAc,EAAE,MAAA,MAAA,WAAW,CAAC,gBAAgB,0CAAE,cAAc,mCAAI,EAAE;gBAClE,oBAAoB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,oBAAoB;aAC3E,CAAC;YAGF,MAAM,iBAAiB,GAAuB,MAAM,IAAI,CAAC,kBAAkB,CAAC,OAAO,CAAC,uBAAuB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,eAAe,CAAC,CAAC;YAE5J,MAAM,YAAY,GAA6B,IAAI,wBAAwB,CAAC,IAAI,CAAC,kCAAkC,EAAE,CAAC,CAAC;YAEvH,MAAM,UAAU,GAAa,gBAAgB,CAAC,iBAAiB,CAAC,CAAC;YACjE,MAAM,iBAAiB,GAA0B,MAAM,eAAe,CAAC;gBACnE,OAAO,EAAE,WAAW,CAAC,OAAO;gBAC5B,oBAAoB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,oBAAoB;gBACxE,UAAU;aACb,EAAE,IAAI,CAAC,mBAAmB,CAAC,CAAC;YAE7B,MAAM,YAAY,CAAC,eAAe,CAC9B,iBAAiB,CAAC,GAAG,CAAC,EAAE,CAAA,EAAE,WAAA,OAAA,iCAAK,EAAE,KAAE,OAAO,EAAC,MAAA,EAAE,CAAC,QAAQ,0CAAE,MAAM,CAAC,CAAC,CAAA,EAAE,CAAA,CAAA,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,IAAI,KAAE,YAAY,CAAC,oBAAoB,CAAC,IAAE,CAAA,EAAA,CAAC,EAChH,iBAAiB,CAAC,GAAG,CAAC,EAAE,CAAA,EAAE,WAAA,OAAA,iCAAK,EAAE,KAAE,OAAO,EAAC,MAAA,EAAE,CAAC,QAAQ,0CAAE,MAAM,CAAC,CAAC,CAAA,EAAE,CAAA,CAAA,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,IAAI,KAAE,YAAY,CAAC,wBAAwB,CAAC,IAAE,CAAA,EAAA,CAAC,CACvH,CAAC;YAEF,MAAM,IAAI,CAAC,oBAAoB,CAAC,uBAAuB,EAAE,iBAAiB,EAAE;gBACxE,qBAAqB,EAAE,YAAY;aACtC,CAAC,CAAC;YAEH,eAAe,CAAC,uBAAuB,EAAE,IAAI,CAAC,kBAAkB,EAAE,IAAI,CAAC,mBAAmB,CAAC,CAAC,IAAI,CAAC,GAAE,EAAE,CAAA,OAAO,CAAC,GAAG,CAAC,iBAAiB,CAAC,CAAC,CAAC;YAErI,OAAO,KAAK,CAAC,CAAC;QAClB,CAAC;KAAA;IAES,kCAAkC;QACxC,IAAI,CAAC,aAAa,GAAI,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,eAAe,CAAC;IAC1H,CAAC;IAEe,cAAc;;YAC1B,uCACQ,IAAI,CAAC,eAAe,KACxB,MAAM,EAAE,MAAM,IAAI,CAAC,kBAAkB,CAAC,kBAAkB,EAAE,EAC1D,WAAW,EAAE,IAAI,IACpB;QACL,CAAC;KAAA;CAEJ;AAED,SAAe,eAAe,CAAC,uBAAuD,EAAE,kBAA+C,EAAE,mBAAiD;;QACtL,MAAM,iBAAiB,GAAuB,MAAM,UAAU,CAAC,qBAAqB,CAAC;YACjF,KAAK,EAAE,uBAAuB,CAAC,KAAK;YACpC,OAAO,EAAE,uBAAuB,CAAC,OAAO;YACxC,IAAI,EAAE;gBACF,KAAK,EAAE,uBAAuB,CAAC,IAAI,CAAC,KAAK;gBACzC,KAAK,EAAE,uBAAuB,CAAC,IAAI,CAAC,KAAK,GAAG,uBAAuB,CAAC,IAAI,CAAC,KAAK;aACjF;YACD,WAAW,EAAE,IAAI;SACpB,CAAC,CAAC;QACH,MAAM,UAAU,GAAa,gBAAgB,CAAC,iBAAiB,CAAC,CAAC;QACjE,IAAG,uBAAuB,CAAC,OAAO,EAAE,CAAC;YACjC,MAAM,iBAAiB,GAA0B,MAAM,UAAU,CAAC,8BAA8B,CAAC,yBAAyB,CAAC;gBACvH,OAAO,EAAE,uBAAuB,CAAC,OAAO;gBACxC,UAAU;aACb,CAAC,CAAC,CAAC;YACJ,MAAM,iBAAiB,GAAG,QAAQ,CAAC,YAAY,CAAS,iBAAiB,CAAC,GAAG,CAAC,EAAE,CAAA,EAAE,WAAA,OAAA,YAAY,CAAC,aAAa,CAAC,MAAA,EAAE,CAAC,SAAS,mCAAI,EAAE,CAAC,CAAC,OAAO,CAAA,EAAA,CAAC,CAAC,CAAC;YAC3I,QAAQ,CAAC,UAAU,CAAC,iBAAiB,EAAC,GAAG,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,qBAAqB,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAC,CAAC;QAC7G,CAAC;IACL,CAAC;CAAA;AAED,SAAS,gBAAgB,CAAC,iBAAqC;;IAC3D,OAAO,QAAQ,CAAC,YAAY,CAAS,MAAA,MAAA,iBAAiB,CAAC,iBAAiB,0CAAE,GAAG,CAAC,EAAE,CAAA,EAAE;QAC9E,aAAa,CAAC,EAAE,aAAF,EAAE,uBAAF,EAAE,CAAE,SAAS,CAAC,CAAC;QAC7B,OAAO,YAAY,CAAC,WAAW,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,OAAO,CAAA;IACzD,CAAC,CAAC,mCAAI,EAAE,CAAC,CAAC;AACd,CAAC;AAED,SAAe,eAAe,CAAC,kBAAkH,EAAE,mBAAiD;;QAChM,OAAO,MAAM,mBAAmB,CAAC,OAAO,iCACjC,yBAAyB,CAAC,kBAAkB,CAAC,KAChD,SAAS,EAAE,KAAK,EAChB,oBAAoB,EAAE,kBAAkB,CAAC,oBAAoB,IAC/D,CAAC;IACP,CAAC;CAAA;AAED,SAAS,yBAAyB,CAAC,kBAAkH;IACjJ,OAAQ;QACJ,OAAO,EAAE,kBAAkB,CAAC,OAAO;QACnC,KAAK,EAAE,cAAc,CAAC,gBAAgB;QACtC,OAAO,EAAE,CAAC,mBAAmB,CAAC,WAAW,CAAC;QAC1C,OAAO,EAAE,CAAC;gBACN,MAAM,EAAC,mBAAmB,CAAC,WAAW;gBACtC,SAAS,EAAE,aAAa,CAAC,MAAM;gBAC/B,KAAK,EAAC,SAAS,CAAC,IAAI;gBACpB,MAAM,EAAC,CAAC,YAAY,CAAC,oBAAoB,EAAC,YAAY,CAAC,wBAAwB,CAAC;aACnF,EAAC;gBACE,MAAM,EAAC,mBAAmB,CAAC,WAAW;gBACtC,SAAS,EAAE,aAAa,CAAC,QAAQ;gBACjC,KAAK,EAAC,SAAS,CAAC,QAAQ;gBACxB,MAAM,EAAC,kBAAkB,CAAC,UAAU;aACvC,CAAC;KACL,CAAA;AACL,CAAC"}
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@@ -62,7 +62,11 @@ function collectNextPage(alignmentRequestContext, alignmentCollector, annotation
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const alignmentResponse = yield RcsbClient_1.rcsbClient.requestGroupAlignment({
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group: alignmentRequestContext.group,
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groupId: alignmentRequestContext.groupId,
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page:
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page: {
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first: alignmentRequestContext.page.first,
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after: alignmentRequestContext.page.after + alignmentRequestContext.page.first
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},
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excludeLogo: true
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});
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const targetList = uniqueTargetList(alignmentResponse);
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if (alignmentRequestContext.groupId) {
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@@ -84,7 +88,7 @@ function uniqueTargetList(alignmentResponse) {
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}
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function collectFeatures(annotationsContext, annotationCollector) {
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return tslib_1.__awaiter(this, void 0, void 0, function* () {
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return yield annotationCollector.collect(buildGroupAnnotationQuery(annotationsContext));
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return yield annotationCollector.collect(Object.assign(Object.assign({}, buildGroupAnnotationQuery(annotationsContext)), { isSummary: false, externalTrackBuilder: annotationsContext.externalTrackBuilder }));
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});
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}
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function buildGroupAnnotationQuery(annotationsContext) {
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@@ -92,7 +96,6 @@ function buildGroupAnnotationQuery(annotationsContext) {
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groupId: annotationsContext.groupId,
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group: GqlTypes_1.GroupReference.SequenceIdentity,
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sources: [GqlTypes_1.AnnotationReference.PdbInstance],
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isSummary: false,
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filters: [{
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source: GqlTypes_1.AnnotationReference.PdbInstance,
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operation: GqlTypes_1.OperationType.Equals,
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@@ -103,7 +106,6 @@ function buildGroupAnnotationQuery(annotationsContext) {
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operation: GqlTypes_1.OperationType.Contains,
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field: GqlTypes_1.FieldName.TargetId,
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values: annotationsContext.targetList
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}]
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externalTrackBuilder: annotationsContext.externalTrackBuilder
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}]
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};
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}
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