@rcsb/rcsb-saguaro-app 6.2.5-dev-js-seqcoord.3 → 6.2.5-dev-js-seqcoord.5
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/app.js +1 -1
- package/lib/RcsbFvExamples/SequenceIdentityGroupAlignmentFv.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js.map +1 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.js +4 -3
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.js.map +1 -1
- package/lib/commonjs/RcsbFvExamples/SequenceIdentityGroupAlignmentFv.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js +1 -1
- package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.js +4 -3
- package/package.json +1 -1
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@@ -11,7 +11,7 @@ class UiComponent extends React.Component {
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}, children: this.props.text }));
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}
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}
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-
buildSequenceIdentityAlignmentFv("pfv", "
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+
buildSequenceIdentityAlignmentFv("pfv", "1_30", undefined, {
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boardConfig: {
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selectionChangeCallback: (selection) => {
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console.log(selection);
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@@ -27,7 +27,6 @@ export class RcsbFvGroupAlignment extends RcsbFvAbstractModule {
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sequencePrefix: (_f = (_e = buildConfig.additionalConfig) === null || _e === void 0 ? void 0 : _e.sequencePrefix) !== null && _f !== void 0 ? _f : "",
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externalTrackBuilder: (_g = buildConfig.additionalConfig) === null || _g === void 0 ? void 0 : _g.externalTrackBuilder
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};
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-
collectNextPage(alignmentRequestContext, this.alignmentCollector, this.annotationCollector).then(() => console.log("Next page ready"));
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const alignmentResponse = yield this.alignmentCollector.collect(alignmentRequestContext, (_h = buildConfig.additionalConfig) === null || _h === void 0 ? void 0 : _h.alignmentFilter);
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const trackFactory = new MsaAlignmentTrackFactory(this.getPolymerEntityInstanceTranslator());
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const targetList = uniqueTargetList(alignmentResponse);
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@@ -40,6 +39,7 @@ export class RcsbFvGroupAlignment extends RcsbFvAbstractModule {
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yield this.buildAlignmentTracks(alignmentRequestContext, alignmentResponse, {
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alignmentTrackFactory: trackFactory
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});
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collectNextPage(alignmentRequestContext, this.alignmentCollector, this.annotationCollector).then(() => console.log("Next page ready"));
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return void 0;
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});
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}
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"RcsbFvGroupAlignment.js","sourceRoot":"","sources":["../../../src/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.ts"],"names":[],"mappings":";AAEA,OAAO,EAAC,oBAAoB,EAAC,MAAM,wBAAwB,CAAC;AAE5D,OAAO,EAGH,SAAS,EACT,cAAc,EACd,aAAa,EACb,mBAAmB,EACnB,YAAY,EACf,MAAM,+DAA+D,CAAC;AACvE,OAAO,EACH,wBAAwB,EAC3B,MAAM,iFAAiF,CAAC;AAKzF,OAAO,EAAC,UAAU,EAAC,MAAM,oCAAoC,CAAC;AAC9D,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAC/E,OAAO,EAAC,QAAQ,EAAC,MAAM,kCAAkC,CAAC;AAC1D,OAAO,EAAC,qBAAqB,EAAC,MAAM,6CAA6C,CAAC;AAOlF,MAAM,OAAO,oBAAqB,SAAQ,oBAAoB;IAE1C,cAAc;;;YAC1B,MAAM,WAAW,GAA+B,IAAI,CAAC,WAAW,CAAC;YACjE,aAAa,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,aAAa,CAAC,WAAW,CAAC,KAAK,CAAC,EAAE,aAAa,CAAC,MAAA,WAAW,CAAC,gBAAgB,0CAAE,IAAI,CAAC,CAAC;YACxH,MAAM,uBAAuB,GAAmC;gBAC5D,KAAK,EAAE,WAAW,CAAC,KAAK;gBACxB,OAAO,EAAE,WAAW,CAAC,OAAO;gBAC5B,MAAM,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,eAAe;gBACrD,IAAI,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,IAAI;gBACxC,WAAW,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,WAAW;gBACtD,IAAI,EAAE,WAAW,CAAC,IAAI;gBACtB,EAAE,EAAE,WAAW,CAAC,EAAE;gBAClB,cAAc,EAAC,KAAK;gBACpB,aAAa,EAAC,IAAI;gBAClB,mBAAmB,EAAE,IAAI;gBACzB,cAAc,EAAE,MAAA,MAAA,WAAW,CAAC,gBAAgB,0CAAE,cAAc,mCAAI,EAAE;gBAClE,oBAAoB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,oBAAoB;aAC3E,CAAC;
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1
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+
{"version":3,"file":"RcsbFvGroupAlignment.js","sourceRoot":"","sources":["../../../src/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.ts"],"names":[],"mappings":";AAEA,OAAO,EAAC,oBAAoB,EAAC,MAAM,wBAAwB,CAAC;AAE5D,OAAO,EAGH,SAAS,EACT,cAAc,EACd,aAAa,EACb,mBAAmB,EACnB,YAAY,EACf,MAAM,+DAA+D,CAAC;AACvE,OAAO,EACH,wBAAwB,EAC3B,MAAM,iFAAiF,CAAC;AAKzF,OAAO,EAAC,UAAU,EAAC,MAAM,oCAAoC,CAAC;AAC9D,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAC/E,OAAO,EAAC,QAAQ,EAAC,MAAM,kCAAkC,CAAC;AAC1D,OAAO,EAAC,qBAAqB,EAAC,MAAM,6CAA6C,CAAC;AAOlF,MAAM,OAAO,oBAAqB,SAAQ,oBAAoB;IAE1C,cAAc;;;YAC1B,MAAM,WAAW,GAA+B,IAAI,CAAC,WAAW,CAAC;YACjE,aAAa,CAAC,WAAW,CAAC,OAAO,CAAC,EAAE,aAAa,CAAC,WAAW,CAAC,KAAK,CAAC,EAAE,aAAa,CAAC,MAAA,WAAW,CAAC,gBAAgB,0CAAE,IAAI,CAAC,CAAC;YACxH,MAAM,uBAAuB,GAAmC;gBAC5D,KAAK,EAAE,WAAW,CAAC,KAAK;gBACxB,OAAO,EAAE,WAAW,CAAC,OAAO;gBAC5B,MAAM,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,eAAe;gBACrD,IAAI,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,IAAI;gBACxC,WAAW,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,WAAW;gBACtD,IAAI,EAAE,WAAW,CAAC,IAAI;gBACtB,EAAE,EAAE,WAAW,CAAC,EAAE;gBAClB,cAAc,EAAC,KAAK;gBACpB,aAAa,EAAC,IAAI;gBAClB,mBAAmB,EAAE,IAAI;gBACzB,cAAc,EAAE,MAAA,MAAA,WAAW,CAAC,gBAAgB,0CAAE,cAAc,mCAAI,EAAE;gBAClE,oBAAoB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,oBAAoB;aAC3E,CAAC;YAGF,MAAM,iBAAiB,GAAuB,MAAM,IAAI,CAAC,kBAAkB,CAAC,OAAO,CAAC,uBAAuB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,eAAe,CAAC,CAAC;YAE5J,MAAM,YAAY,GAA6B,IAAI,wBAAwB,CAAC,IAAI,CAAC,kCAAkC,EAAE,CAAC,CAAC;YAEvH,MAAM,UAAU,GAAa,gBAAgB,CAAC,iBAAiB,CAAC,CAAC;YACjE,MAAM,iBAAiB,GAA0B,MAAM,eAAe,CAAC;gBACnE,OAAO,EAAE,WAAW,CAAC,OAAO;gBAC5B,oBAAoB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,oBAAoB;gBACxE,UAAU;aACb,EAAE,IAAI,CAAC,mBAAmB,CAAC,CAAC;YAE7B,MAAM,YAAY,CAAC,eAAe,CAC9B,iBAAiB,CAAC,GAAG,CAAC,EAAE,CAAA,EAAE,WAAA,OAAA,iCAAK,EAAE,KAAE,OAAO,EAAC,MAAA,EAAE,CAAC,QAAQ,0CAAE,MAAM,CAAC,CAAC,CAAA,EAAE,CAAA,CAAA,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,IAAI,KAAE,YAAY,CAAC,oBAAoB,CAAC,IAAE,CAAA,EAAA,CAAC,EAChH,iBAAiB,CAAC,GAAG,CAAC,EAAE,CAAA,EAAE,WAAA,OAAA,iCAAK,EAAE,KAAE,OAAO,EAAC,MAAA,EAAE,CAAC,QAAQ,0CAAE,MAAM,CAAC,CAAC,CAAA,EAAE,CAAA,CAAA,CAAC,aAAD,CAAC,uBAAD,CAAC,CAAE,IAAI,KAAE,YAAY,CAAC,wBAAwB,CAAC,IAAE,CAAA,EAAA,CAAC,CACvH,CAAC;YAEF,MAAM,IAAI,CAAC,oBAAoB,CAAC,uBAAuB,EAAE,iBAAiB,EAAE;gBACxE,qBAAqB,EAAE,YAAY;aACtC,CAAC,CAAC;YAEH,eAAe,CAAC,uBAAuB,EAAE,IAAI,CAAC,kBAAkB,EAAE,IAAI,CAAC,mBAAmB,CAAC,CAAC,IAAI,CAAC,GAAE,EAAE,CAAA,OAAO,CAAC,GAAG,CAAC,iBAAiB,CAAC,CAAC,CAAC;YAErI,OAAO,KAAK,CAAC,CAAC;QAClB,CAAC;KAAA;IAES,kCAAkC;QACxC,IAAI,CAAC,aAAa,GAAI,IAAI,CAAC,cAAc,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,eAAe,CAAC;IAC1H,CAAC;IAEe,cAAc;;YAC1B,uCACQ,IAAI,CAAC,eAAe,KACxB,MAAM,EAAE,MAAM,IAAI,CAAC,kBAAkB,CAAC,kBAAkB,EAAE,EAC1D,WAAW,EAAE,IAAI,IACpB;QACL,CAAC;KAAA;CAEJ;AAED,SAAe,eAAe,CAAC,uBAAuD,EAAE,kBAA+C,EAAE,mBAAiD;;QACtL,MAAM,iBAAiB,GAAuB,MAAM,kBAAkB,CAAC,OAAO,iCACvE,uBAAuB,KAC1B,WAAW,EAAE,IAAI,EACjB,IAAI,EAAE;gBACF,KAAK,EAAE,uBAAuB,CAAC,IAAI,CAAC,KAAK;gBACzC,KAAK,EAAE,uBAAuB,CAAC,IAAI,CAAC,KAAK,GAAG,uBAAuB,CAAC,IAAI,CAAC,KAAK;aACjF,IACH,CAAA;QACF,MAAM,UAAU,GAAa,gBAAgB,CAAC,iBAAiB,CAAC,CAAC;QACjE,IAAG,uBAAuB,CAAC,OAAO,EAAE,CAAC;YACjC,MAAM,iBAAiB,GAA0B,MAAM,eAAe,CAAC;gBACnE,OAAO,EAAE,uBAAuB,CAAC,OAAO;gBACxC,UAAU;aACb,EAAE,mBAAmB,CAAC,CAAC;YACxB,MAAM,iBAAiB,GAAG,QAAQ,CAAC,YAAY,CAAS,iBAAiB,CAAC,GAAG,CAAC,EAAE,CAAA,EAAE,WAAA,OAAA,YAAY,CAAC,aAAa,CAAC,MAAA,EAAE,CAAC,SAAS,mCAAI,EAAE,CAAC,CAAC,OAAO,CAAA,EAAA,CAAC,CAAC,CAAC;YAC3I,QAAQ,CAAC,UAAU,CAAC,iBAAiB,EAAC,GAAG,CAAC,CAAC,OAAO,CAAC,GAAG,CAAC,EAAE,CAAC,qBAAqB,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAC,CAAC;QAC7G,CAAC;IACL,CAAC;CAAA;AAED,SAAS,gBAAgB,CAAC,iBAAqC;;IAC3D,OAAO,QAAQ,CAAC,YAAY,CAAS,MAAA,MAAA,iBAAiB,CAAC,iBAAiB,0CAAE,GAAG,CAAC,EAAE,CAAA,EAAE;QAC9E,aAAa,CAAC,EAAE,aAAF,EAAE,uBAAF,EAAE,CAAE,SAAS,CAAC,CAAC;QAC7B,OAAO,YAAY,CAAC,WAAW,CAAC,EAAE,CAAC,SAAS,CAAC,CAAC,OAAO,CAAA;IACzD,CAAC,CAAC,mCAAI,EAAE,CAAC,CAAC;AACd,CAAC;AAED,SAAe,eAAe,CAAC,kBAAkH,EAAE,mBAAiD;;QAChM,MAAM,yBAAyB,GAAqC;YAChE,OAAO,EAAE,kBAAkB,CAAC,OAAO;YACnC,KAAK,EAAE,cAAc,CAAC,gBAAgB;YACtC,OAAO,EAAE,CAAC,mBAAmB,CAAC,WAAW,CAAC;YAC1C,SAAS,EAAE,KAAK;YAChB,OAAO,EAAE,CAAC;oBACN,MAAM,EAAC,mBAAmB,CAAC,WAAW;oBACtC,SAAS,EAAE,aAAa,CAAC,MAAM;oBAC/B,KAAK,EAAC,SAAS,CAAC,IAAI;oBACpB,MAAM,EAAC,CAAC,YAAY,CAAC,oBAAoB,EAAC,YAAY,CAAC,wBAAwB,CAAC;iBACnF,EAAC;oBACE,MAAM,EAAC,mBAAmB,CAAC,WAAW;oBACtC,SAAS,EAAE,aAAa,CAAC,QAAQ;oBACjC,KAAK,EAAC,SAAS,CAAC,QAAQ;oBACxB,MAAM,EAAC,kBAAkB,CAAC,UAAU;iBACvC,CAAC;YACF,oBAAoB,EAAE,kBAAkB,CAAC,oBAAoB;SAChE,CAAA;QACD,OAAO,MAAM,mBAAmB,CAAC,OAAO,CAAC,yBAAyB,CAAC,CAAC;IACxE,CAAC;CAAA"}
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@@ -83,14 +83,15 @@ export class RcsbFvInterface extends RcsbFvAbstractModule {
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const auth = (yield rcsbRequestCtxManager.getEntityToInstance(this.instanceId.split(TagDelimiter.instance)[0])).translateAsymToAuth(asym);
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const operators = interfaceTranslate.getOperatorIds(interfaceId);
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let partnerOperator = "";
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const partner_idx = (_a = ann.target_identifiers) === null || _a === void 0 ? void 0 : _a.interface_partner_index;
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if (operators && typeof partner_idx == "number" && rcsbContext && Array.isArray(rcsbContext.operatorIds)) {
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const opIndex = operators[partner_idx].map(o => o.join("-")).indexOf(rcsbContext.operatorIds.join("-"));
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if (opIndex < 0) {
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console.error(`Operator Id ${rcsbContext.operatorIds.join("-")} not found in [[${operators[0]}],[${operators[1]}]]`);
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console.error(ann.target_identifiers);
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}
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else {
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partnerOperator = TagDelimiter.operatorComposition + operators[1 -
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partnerOperator = TagDelimiter.operatorComposition + operators[1 - partner_idx][opIndex].join(TagDelimiter.operatorComposition);
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}
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}
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return (asym == auth ? asym : `${asym}[auth ${auth}]`) + partnerOperator;
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@@ -1 +1 @@
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-
{"version":3,"file":"RcsbFvInterface.js","sourceRoot":"","sources":["../../../src/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.ts"],"names":[],"mappings":";AAAA,OAAO,EAIH,iBAAiB,EACjB,mBAAmB,EACtB,MAAM,+DAA+D,CAAC;AACvE,OAAO,EAAC,oBAAoB,EAAC,MAAM,wBAAwB,CAAC;AAM5D,OAAO,KAAK,GAAG,MAAM,yDAAyD,CAAC;AAE/E,OAAO,EAAC,cAAc,EAAE,oBAAoB,EAAC,MAAM,gDAAgD,CAAC;AACpG,OAAO,EAAC,cAAc,EAAE,oBAAoB,EAAC,MAAM,gDAAgD,CAAC;AACpG,OAAO,EAAC,WAAW,EAAC,MAAM,8BAA8B,CAAC;AACzD,OAAO,EAAC,qBAAqB,EAAC,MAAM,6CAA6C,CAAC;AAClF,OAAO,EAAC,oBAAoB,EAAC,MAAM,6EAA6E,CAAC;AACjH,OAAO,EACH,iCAAiC,EACpC,MAAM,+FAA+F,CAAC;AAEvG,OAAO,EAAC,UAAU,EAAC,MAAM,oCAAoC,CAAC;AAC9D,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAG/E,MAAM,mBAAmB,GAAmC,GAAG,CAAC;AAEhE,MAAM,OAAO,eAAgB,SAAQ,oBAAoB;IAIrC,cAAc;;;YAC1B,MAAM,WAAW,GAA+B,IAAI,CAAC,WAAW,CAAC;YACjE,MAAM,UAAU,GAAuB,WAAW,CAAC,UAAU,CAAC;YAC9D,aAAa,CAAC,UAAU,CAAC,CAAC;YAC1B,IAAI,CAAC,UAAU,GAAG,UAAU,CAAC;YAC7B,MAAM,MAAM,GAA+B,CAAC,mBAAmB,CAAC,SAAS,EAAE,mBAAmB,CAAC,WAAW,EAAE,mBAAmB,CAAC,OAAO,EAAE,mBAAmB,CAAC,YAAY,CAAC,CAAC;YAE3K,MAAM,uBAAuB,GAA8B;gBACvD,OAAO,EAAE,UAAU;gBACnB,IAAI,EAAE,iBAAiB,CAAC,WAAW;gBACnC,EAAE,EAAE,iBAAiB,CAAC,OAAO;gBAC7B,oBAAoB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,oBAAoB;aAC3E,CAAC;YACF,MAAM,iBAAiB,GAAuB,MAAM,IAAI,CAAC,kBAAkB,CAAC,OAAO,CAAC,uBAAuB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,eAAe,CAAC,CAAC;YAC5J,MAAM,IAAI,CAAC,oBAAoB,CAAC,uBAAuB,EAAE,iBAAiB,EAAE;gBACxE,oBAAoB,EAAE,IAAI,oBAAoB,CAAC,IAAI,CAAC,kCAAkC,EAAE,EAAC,IAAI,iCAAiC,CAAC,IAAI,CAAC,kCAAkC,EAAE,CAAC,CAAC;aAC7K,CAAC,CAAC;YAEH,MAAM,yBAAyB,GAA6B;gBACxD,OAAO,EAAE,UAAU;gBACnB,SAAS,EAAE,iBAAiB,CAAC,WAAW;gBACxC,WAAW,EAAE,IAAI,CAAC,WAAW,CAAC,MAAA,WAAW,aAAX,WAAW,uBAAX,WAAW,CAAE,gBAAgB,0CAAE,WAAW,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;gBACpF,UAAU,EAAE,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC;gBACtC,UAAU,EAAE,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC;gBACtC,OAAO,EAAC,MAAM;gBACd,mBAAmB,EAAE,oBAAoB;gBACzC,gBAAgB,EAAE,MAAM;gBACxB,WAAW,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,WAAW;gBACtD,oBAAoB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,oBAAoB;aAC3E,CAAC;YACF,MAAM,mBAAmB,GAA0B,MAAM,IAAI,CAAC,mBAAmB,CAAC,OAAO,CAAC,yBAAyB,CAAC,CAAC;YACrH,MAAM,IAAI,CAAC,qBAAqB,CAAC,yBAAyB,EAAC,mBAAmB,EAAC,mBAAmB,CAAC,CAAC;YAEpG,IAAI,CAAC,eAAe,CAAC,MAAM,GAAG,MAAM,IAAI,CAAC,kBAAkB,CAAC,kBAAkB,EAAE,CAAC;YACjF,IAAI,CAAC,eAAe,CAAC,WAAW,GAAG,IAAI,CAAC;YACxC,OAAO,KAAK,CAAC,CAAC;QAClB,CAAC;KAAA;IAES,kCAAkC;;QACxC,MAAM,WAAW,GAA+B,IAAI,CAAC,WAAW,CAAC;QACjE,IAAI,CAAC,aAAa;YACd,CAAC,CAAA,MAAA,WAAW,CAAC,gBAAgB,0CAAE,cAAc,CAAA,CAAC,CAAC;gBAC3C,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,gBAAgB,CAAC;gBAChF,CAAC;oBACD,IAAI,CAAC,eAAe,CAAC,MAAM,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;IAC/D,CAAC;IAEa,UAAU,CAAC,GAAwB,EAAE,CAAW;;;YAC1D,IAAG,GAAG,CAAC,MAAM,KAAK,mBAAmB,CAAC,YAAY,KAAI,MAAA,GAAG,CAAC,kBAAkB,0CAAE,YAAY,CAAA,EAAE,CAAC;gBACzF,OAAO,GAAG,CAAC,kBAAkB,CAAC,YAAY,GAAG,GAAG,GAAG,GAAG,CAAC,kBAAkB,CAAC,uBAAuB,CAAC;YACtG,CAAC;QACL,CAAC;KAAA;IAEO,WAAW,CAAC,WAA6B;QAC7C,OAAO,CAAC,CAAO,GAAwB,EAAE,CAAW,EAAE,EAAE;;YACpD,IAAI,GAAG,CAAC,MAAM,KAAK,mBAAmB,CAAC,YAAY,EAAE,CAAC;gBAClD,IAAG,CAAC,GAAG,CAAC,SAAS,IAAI,CAAC,GAAG,CAAC,kBAAkB;oBACxC,OAAO,EAAE,CAAC;gBACd,MAAM,kBAAkB,GAAG,MAAM,qBAAqB,CAAC,sBAAsB,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;gBAC7F,MAAM,KAAK,GAAW,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;gBACtE,MAAM,WAAW,GAAW,YAAY,CAAC,cAAc,CAAC,GAAG,CAAC,kBAAkB,CAAC,CAAC;gBAChF,MAAM,MAAM,GAAiC,kBAAkB,CAAC,YAAY,CAAC,WAAW,CAAC,CAAC;gBAC1F,IAAG,CAAC,MAAM;oBACN,OAAO,EAAE,CAAC;gBACd,MAAM,IAAI,GAAW,MAAM,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;gBAChE,MAAM,IAAI,GAAuB,CAAC,MAAM,qBAAqB,CAAC,mBAAmB,CAAC,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC;gBAC9J,MAAM,SAAS,GAA6D,kBAAkB,CAAC,cAAc,CAAC,WAAW,CAAC,CAAC;gBAC3H,IAAI,eAAe,GAAW,EAAE,CAAC;gBACjC,
|
|
1
|
+
{"version":3,"file":"RcsbFvInterface.js","sourceRoot":"","sources":["../../../src/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.ts"],"names":[],"mappings":";AAAA,OAAO,EAIH,iBAAiB,EACjB,mBAAmB,EACtB,MAAM,+DAA+D,CAAC;AACvE,OAAO,EAAC,oBAAoB,EAAC,MAAM,wBAAwB,CAAC;AAM5D,OAAO,KAAK,GAAG,MAAM,yDAAyD,CAAC;AAE/E,OAAO,EAAC,cAAc,EAAE,oBAAoB,EAAC,MAAM,gDAAgD,CAAC;AACpG,OAAO,EAAC,cAAc,EAAE,oBAAoB,EAAC,MAAM,gDAAgD,CAAC;AACpG,OAAO,EAAC,WAAW,EAAC,MAAM,8BAA8B,CAAC;AACzD,OAAO,EAAC,qBAAqB,EAAC,MAAM,6CAA6C,CAAC;AAClF,OAAO,EAAC,oBAAoB,EAAC,MAAM,6EAA6E,CAAC;AACjH,OAAO,EACH,iCAAiC,EACpC,MAAM,+FAA+F,CAAC;AAEvG,OAAO,EAAC,UAAU,EAAC,MAAM,oCAAoC,CAAC;AAC9D,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAG/E,MAAM,mBAAmB,GAAmC,GAAG,CAAC;AAEhE,MAAM,OAAO,eAAgB,SAAQ,oBAAoB;IAIrC,cAAc;;;YAC1B,MAAM,WAAW,GAA+B,IAAI,CAAC,WAAW,CAAC;YACjE,MAAM,UAAU,GAAuB,WAAW,CAAC,UAAU,CAAC;YAC9D,aAAa,CAAC,UAAU,CAAC,CAAC;YAC1B,IAAI,CAAC,UAAU,GAAG,UAAU,CAAC;YAC7B,MAAM,MAAM,GAA+B,CAAC,mBAAmB,CAAC,SAAS,EAAE,mBAAmB,CAAC,WAAW,EAAE,mBAAmB,CAAC,OAAO,EAAE,mBAAmB,CAAC,YAAY,CAAC,CAAC;YAE3K,MAAM,uBAAuB,GAA8B;gBACvD,OAAO,EAAE,UAAU;gBACnB,IAAI,EAAE,iBAAiB,CAAC,WAAW;gBACnC,EAAE,EAAE,iBAAiB,CAAC,OAAO;gBAC7B,oBAAoB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,oBAAoB;aAC3E,CAAC;YACF,MAAM,iBAAiB,GAAuB,MAAM,IAAI,CAAC,kBAAkB,CAAC,OAAO,CAAC,uBAAuB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,eAAe,CAAC,CAAC;YAC5J,MAAM,IAAI,CAAC,oBAAoB,CAAC,uBAAuB,EAAE,iBAAiB,EAAE;gBACxE,oBAAoB,EAAE,IAAI,oBAAoB,CAAC,IAAI,CAAC,kCAAkC,EAAE,EAAC,IAAI,iCAAiC,CAAC,IAAI,CAAC,kCAAkC,EAAE,CAAC,CAAC;aAC7K,CAAC,CAAC;YAEH,MAAM,yBAAyB,GAA6B;gBACxD,OAAO,EAAE,UAAU;gBACnB,SAAS,EAAE,iBAAiB,CAAC,WAAW;gBACxC,WAAW,EAAE,IAAI,CAAC,WAAW,CAAC,MAAA,WAAW,aAAX,WAAW,uBAAX,WAAW,CAAE,gBAAgB,0CAAE,WAAW,CAAC,CAAC,IAAI,CAAC,IAAI,CAAC;gBACpF,UAAU,EAAE,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC;gBACtC,UAAU,EAAE,IAAI,CAAC,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC;gBACtC,OAAO,EAAC,MAAM;gBACd,mBAAmB,EAAE,oBAAoB;gBACzC,gBAAgB,EAAE,MAAM;gBACxB,WAAW,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,WAAW;gBACtD,oBAAoB,EAAE,MAAA,WAAW,CAAC,gBAAgB,0CAAE,oBAAoB;aAC3E,CAAC;YACF,MAAM,mBAAmB,GAA0B,MAAM,IAAI,CAAC,mBAAmB,CAAC,OAAO,CAAC,yBAAyB,CAAC,CAAC;YACrH,MAAM,IAAI,CAAC,qBAAqB,CAAC,yBAAyB,EAAC,mBAAmB,EAAC,mBAAmB,CAAC,CAAC;YAEpG,IAAI,CAAC,eAAe,CAAC,MAAM,GAAG,MAAM,IAAI,CAAC,kBAAkB,CAAC,kBAAkB,EAAE,CAAC;YACjF,IAAI,CAAC,eAAe,CAAC,WAAW,GAAG,IAAI,CAAC;YACxC,OAAO,KAAK,CAAC,CAAC;QAClB,CAAC;KAAA;IAES,kCAAkC;;QACxC,MAAM,WAAW,GAA+B,IAAI,CAAC,WAAW,CAAC;QACjE,IAAI,CAAC,aAAa;YACd,CAAC,CAAA,MAAA,WAAW,CAAC,gBAAgB,0CAAE,cAAc,CAAA,CAAC,CAAC;gBAC3C,CAAC,IAAI,CAAC,cAAc,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC,MAAM,CAAC,IAAI,CAAC,gBAAgB,CAAC;gBAChF,CAAC;oBACD,IAAI,CAAC,eAAe,CAAC,MAAM,CAAC,IAAI,CAAC,gBAAgB,CAAC,CAAC;IAC/D,CAAC;IAEa,UAAU,CAAC,GAAwB,EAAE,CAAW;;;YAC1D,IAAG,GAAG,CAAC,MAAM,KAAK,mBAAmB,CAAC,YAAY,KAAI,MAAA,GAAG,CAAC,kBAAkB,0CAAE,YAAY,CAAA,EAAE,CAAC;gBACzF,OAAO,GAAG,CAAC,kBAAkB,CAAC,YAAY,GAAG,GAAG,GAAG,GAAG,CAAC,kBAAkB,CAAC,uBAAuB,CAAC;YACtG,CAAC;QACL,CAAC;KAAA;IAEO,WAAW,CAAC,WAA6B;QAC7C,OAAO,CAAC,CAAO,GAAwB,EAAE,CAAW,EAAE,EAAE;;YACpD,IAAI,GAAG,CAAC,MAAM,KAAK,mBAAmB,CAAC,YAAY,EAAE,CAAC;gBAClD,IAAG,CAAC,GAAG,CAAC,SAAS,IAAI,CAAC,GAAG,CAAC,kBAAkB;oBACxC,OAAO,EAAE,CAAC;gBACd,MAAM,kBAAkB,GAAG,MAAM,qBAAqB,CAAC,sBAAsB,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;gBAC7F,MAAM,KAAK,GAAW,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;gBACtE,MAAM,WAAW,GAAW,YAAY,CAAC,cAAc,CAAC,GAAG,CAAC,kBAAkB,CAAC,CAAC;gBAChF,MAAM,MAAM,GAAiC,kBAAkB,CAAC,YAAY,CAAC,WAAW,CAAC,CAAC;gBAC1F,IAAG,CAAC,MAAM;oBACN,OAAO,EAAE,CAAC;gBACd,MAAM,IAAI,GAAW,MAAM,CAAC,CAAC,CAAC,IAAI,KAAK,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,MAAM,CAAC,CAAC,CAAC,CAAC;gBAChE,MAAM,IAAI,GAAuB,CAAC,MAAM,qBAAqB,CAAC,mBAAmB,CAAC,IAAI,CAAC,UAAU,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,mBAAmB,CAAC,IAAI,CAAC,CAAC;gBAC9J,MAAM,SAAS,GAA6D,kBAAkB,CAAC,cAAc,CAAC,WAAW,CAAC,CAAC;gBAC3H,IAAI,eAAe,GAAW,EAAE,CAAC;gBACjC,MAAM,WAAW,GAAI,MAAA,GAAG,CAAC,kBAAkB,0CAAE,uBAAuB,CAAC;gBACrE,IAAG,SAAS,IAAI,OAAO,WAAW,IAAI,QAAQ,IAAI,WAAW,IAAI,KAAK,CAAC,OAAO,CAAC,WAAW,CAAC,WAAW,CAAC,EAAC,CAAC;oBACrG,MAAM,OAAO,GAAW,SAAS,CAAC,WAAW,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA,EAAE,CAAA,CAAC,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC,OAAO,CAAC,WAAW,CAAC,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,CAAC,CAAC;oBAC9G,IAAG,OAAO,GAAG,CAAC,EAAE,CAAC;wBACb,OAAO,CAAC,KAAK,CAAC,eAAe,WAAW,CAAC,WAAW,CAAC,IAAI,CAAC,GAAG,CAAC,mBAAmB,SAAS,CAAC,CAAC,CAAC,MAAM,SAAS,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC;wBACrH,OAAO,CAAC,KAAK,CAAC,GAAG,CAAC,kBAAkB,CAAC,CAAC;oBAC1C,CAAC;yBAAM,CAAC;wBACJ,eAAe,GAAG,YAAY,CAAC,mBAAmB,GAAG,SAAS,CAAC,CAAC,GAAG,WAAW,CAAC,CAAC,OAAO,CAAC,CAAC,IAAI,CAAC,YAAY,CAAC,mBAAmB,CAAC,CAAC;oBACpI,CAAC;gBACL,CAAC;gBACD,OAAO,CAAC,IAAI,IAAI,IAAI,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,GAAG,IAAI,SAAS,IAAI,GAAG,CAAC,GAAC,eAAe,CAAC;YAC3E,CAAC;QACL,CAAC,CAAA,CAAC,CAAC;IACP,CAAC;IAEa,UAAU,CAAC,GAAwB,EAAE,CAAW;;YAC1D,IAAI,GAAG,CAAC,MAAM,KAAK,mBAAmB,CAAC,YAAY,IAAI,CAAC,CAAC,IAAI,KAAK,WAAW,CAAC,cAAc,EAAE,CAAC;gBAC3F,OAAO,gBAAgB,CAAC;YAC5B,CAAC;QACL,CAAC;KAAA;CACJ;AAED,MAAM,UAAU,oBAAoB,CAAC,WAAuC;IACxE,MAAM,MAAM,GAA+B,cAAc,CAAC,WAAW,CAAC,CAAC;IACvE,MAAM,MAAM,GAA+B,cAAc,CAAC,WAAW,CAAC,CAAC;IACvE,OAAO,IAAI,OAAO,CAA6B,OAAO,CAAC,EAAE;QACrD,MAAM,GAAG,GAA8B,IAAI,KAAK,EAAuB,CAAC;QACxE,IAAG,MAAM,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC;YAC1B,GAAG,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,CAAC;QACxB,IAAG,MAAM,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC;YAC1B,GAAG,CAAC,IAAI,CAAC,GAAG,MAAM,CAAC,CAAA;QACvB,OAAO,CAAC,GAAG,CAAC,CAAC;IACjB,CAAC,CAAC,CAAA;AACN,CAAC;AAED,MAAM,UAAU,MAAM,CAAC,GAA+B;IAClD,OAAO,IAAI,OAAO,CAA6B,OAAO,CAAC,EAAE;QACrD,OAAO,CAAC,oBAAoB,CAAC,oBAAoB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC;IAC7D,CAAC,CAAC,CAAA;AACN,CAAC"}
|
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@@ -14,7 +14,7 @@ class UiComponent extends react_1.default.Component {
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14
14
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}, children: this.props.text }));
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15
15
|
}
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16
16
|
}
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17
|
-
(0, RcsbFvBuilder_1.buildSequenceIdentityAlignmentFv)("pfv", "
|
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17
|
+
(0, RcsbFvBuilder_1.buildSequenceIdentityAlignmentFv)("pfv", "1_30", undefined, {
|
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18
18
|
boardConfig: {
|
|
19
19
|
selectionChangeCallback: (selection) => {
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20
20
|
console.log(selection);
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@@ -30,7 +30,6 @@ class RcsbFvGroupAlignment extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
|
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30
30
|
sequencePrefix: (_f = (_e = buildConfig.additionalConfig) === null || _e === void 0 ? void 0 : _e.sequencePrefix) !== null && _f !== void 0 ? _f : "",
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31
31
|
externalTrackBuilder: (_g = buildConfig.additionalConfig) === null || _g === void 0 ? void 0 : _g.externalTrackBuilder
|
|
32
32
|
};
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33
|
-
collectNextPage(alignmentRequestContext, this.alignmentCollector, this.annotationCollector).then(() => console.log("Next page ready"));
|
|
34
33
|
const alignmentResponse = yield this.alignmentCollector.collect(alignmentRequestContext, (_h = buildConfig.additionalConfig) === null || _h === void 0 ? void 0 : _h.alignmentFilter);
|
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35
34
|
const trackFactory = new MsaAlignmentTrackFactory_1.MsaAlignmentTrackFactory(this.getPolymerEntityInstanceTranslator());
|
|
36
35
|
const targetList = uniqueTargetList(alignmentResponse);
|
|
@@ -43,6 +42,7 @@ class RcsbFvGroupAlignment extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
|
|
|
43
42
|
yield this.buildAlignmentTracks(alignmentRequestContext, alignmentResponse, {
|
|
44
43
|
alignmentTrackFactory: trackFactory
|
|
45
44
|
});
|
|
45
|
+
collectNextPage(alignmentRequestContext, this.alignmentCollector, this.annotationCollector).then(() => console.log("Next page ready"));
|
|
46
46
|
return void 0;
|
|
47
47
|
});
|
|
48
48
|
}
|
|
@@ -88,14 +88,15 @@ class RcsbFvInterface extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
|
|
|
88
88
|
const auth = (yield RcsbRequestContextManager_1.rcsbRequestCtxManager.getEntityToInstance(this.instanceId.split(TagDelimiter_1.TagDelimiter.instance)[0])).translateAsymToAuth(asym);
|
|
89
89
|
const operators = interfaceTranslate.getOperatorIds(interfaceId);
|
|
90
90
|
let partnerOperator = "";
|
|
91
|
-
|
|
92
|
-
|
|
91
|
+
const partner_idx = (_a = ann.target_identifiers) === null || _a === void 0 ? void 0 : _a.interface_partner_index;
|
|
92
|
+
if (operators && typeof partner_idx == "number" && rcsbContext && Array.isArray(rcsbContext.operatorIds)) {
|
|
93
|
+
const opIndex = operators[partner_idx].map(o => o.join("-")).indexOf(rcsbContext.operatorIds.join("-"));
|
|
93
94
|
if (opIndex < 0) {
|
|
94
95
|
console.error(`Operator Id ${rcsbContext.operatorIds.join("-")} not found in [[${operators[0]}],[${operators[1]}]]`);
|
|
95
96
|
console.error(ann.target_identifiers);
|
|
96
97
|
}
|
|
97
98
|
else {
|
|
98
|
-
partnerOperator = TagDelimiter_1.TagDelimiter.operatorComposition + operators[1 -
|
|
99
|
+
partnerOperator = TagDelimiter_1.TagDelimiter.operatorComposition + operators[1 - partner_idx][opIndex].join(TagDelimiter_1.TagDelimiter.operatorComposition);
|
|
99
100
|
}
|
|
100
101
|
}
|
|
101
102
|
return (asym == auth ? asym : `${asym}[auth ${auth}]`) + partnerOperator;
|