@rcsb/rcsb-saguaro-app 6.2.3 → 6.2.5-dev-js-seqcoord.1
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/build/app.js +1 -1
- package/build/constants.js +1 -1
- package/build/plot.js +1 -1
- package/build/plot.js.LICENSE.txt +2 -2
- package/build/worker.js +1 -1
- package/lib/ExternalResources/NcbiData/NcbiGenomeSequenceData.js +1 -0
- package/lib/ExternalResources/NcbiData/NcbiGenomeSequenceData.js.map +1 -0
- package/lib/ExternalResources/NcbiData/NcbiSummary.js +1 -0
- package/lib/ExternalResources/NcbiData/NcbiSummary.js.map +1 -0
- package/lib/RcsbAnnotationConfig/AnnotationConfigInterface.js +1 -0
- package/lib/RcsbAnnotationConfig/AnnotationConfigInterface.js.map +1 -0
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.ac.json +2 -1
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.d.ts +2 -2
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.js +2 -1
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.js.map +1 -0
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConstants.js +1 -0
- package/lib/RcsbAnnotationConfig/RcsbAnnotationConstants.js.map +1 -0
- package/lib/RcsbAnnotationConfig/RcsbDistributionConfig.js +1 -0
- package/lib/RcsbAnnotationConfig/RcsbDistributionConfig.js.map +1 -0
- package/lib/RcsbChartWeb/AbsractChartComponent.js +1 -0
- package/lib/RcsbChartWeb/AbsractChartComponent.js.map +1 -0
- package/lib/RcsbChartWeb/BarChartComponent.js +1 -0
- package/lib/RcsbChartWeb/BarChartComponent.js.map +1 -0
- package/lib/RcsbChartWeb/HistogramChartComponent.d.ts +0 -1
- package/lib/RcsbChartWeb/HistogramChartComponent.js +1 -0
- package/lib/RcsbChartWeb/HistogramChartComponent.js.map +1 -0
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.d.ts +4 -4
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.js +9 -8
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.js.map +1 -0
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.d.ts +4 -4
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.js +1 -0
- package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.js.map +1 -0
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.d.ts +4 -4
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.js +18 -10
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.js.map +1 -0
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.d.ts +11 -10
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.js +1 -0
- package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/DataCollectorInterface.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/DataCollectorInterface.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/GroupMemberCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/GroupMemberCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/GroupPropertyCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/GroupPropertyCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/InterfaceInstanceCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/InterfaceInstanceCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleEntityInstancesCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleEntityInstancesCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleInstanceSequencesCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultipleInstanceSequencesCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.js +2 -1
- package/lib/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.js.map +1 -0
- package/lib/RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector.js +1 -0
- package/lib/RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector.js.map +1 -0
- package/lib/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.d.ts +7 -7
- package/lib/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.js +1 -0
- package/lib/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.js.map +1 -0
- package/lib/RcsbCollectTools/FeatureTools/FeatureTools.js +3 -2
- package/lib/RcsbCollectTools/FeatureTools/FeatureTools.js.map +1 -0
- package/lib/RcsbExport/FeatureType.d.ts +4 -4
- package/lib/RcsbExport/FeatureType.js +3 -2
- package/lib/RcsbExport/FeatureType.js.map +1 -0
- package/lib/RcsbExport/RcsbFvUI.js +1 -0
- package/lib/RcsbExport/RcsbFvUI.js.map +1 -0
- package/lib/RcsbFvExamples/ChromosomeFv.js +1 -0
- package/lib/RcsbFvExamples/ChromosomeFv.js.map +1 -0
- package/lib/RcsbFvExamples/EntitySummaryFv.js +1 -0
- package/lib/RcsbFvExamples/EntitySummaryFv.js.map +1 -0
- package/lib/RcsbFvExamples/ExternalDataProvider.js +6 -5
- package/lib/RcsbFvExamples/ExternalDataProvider.js.map +1 -0
- package/lib/RcsbFvExamples/GroupHistogram.js +1 -0
- package/lib/RcsbFvExamples/GroupHistogram.js.map +1 -0
- package/lib/RcsbFvExamples/InstanceFv.js +1 -0
- package/lib/RcsbFvExamples/InstanceFv.js.map +1 -0
- package/lib/RcsbFvExamples/InstanceSequenceFv.js +3 -2
- package/lib/RcsbFvExamples/InstanceSequenceFv.js.map +1 -0
- package/lib/RcsbFvExamples/ResidueDistribution.js +1 -0
- package/lib/RcsbFvExamples/ResidueDistribution.js.map +1 -0
- package/lib/RcsbFvExamples/SequenceIdentityGroupAlignmentFv.js +2 -1
- package/lib/RcsbFvExamples/SequenceIdentityGroupAlignmentFv.js.map +1 -0
- package/lib/RcsbFvExamples/SequenceIdentityGroupFv.js +1 -0
- package/lib/RcsbFvExamples/SequenceIdentityGroupFv.js.map +1 -0
- package/lib/RcsbFvExamples/SingleEntitySummaryFv.js +1 -0
- package/lib/RcsbFvExamples/SingleEntitySummaryFv.js.map +1 -0
- package/lib/RcsbFvExamples/TestCollectors.js +1 -0
- package/lib/RcsbFvExamples/TestCollectors.js.map +1 -0
- package/lib/RcsbFvExamples/UniprotAlignmentFv.js +1 -0
- package/lib/RcsbFvExamples/UniprotAlignmentFv.js.map +1 -0
- package/lib/RcsbFvExamples/UniprotEntityInstanceFv.js +1 -0
- package/lib/RcsbFvExamples/UniprotEntityInstanceFv.js.map +1 -0
- package/lib/RcsbFvExamples/UniprotFv.js +1 -0
- package/lib/RcsbFvExamples/UniprotFv.js.map +1 -0
- package/lib/RcsbFvExamples/UniprotGroupFv.js +7 -5
- package/lib/RcsbFvExamples/UniprotGroupFv.js.map +1 -0
- package/lib/RcsbFvExamples/utils/events.js +1 -0
- package/lib/RcsbFvExamples/utils/events.js.map +1 -0
- package/lib/RcsbFvUI/AbstractMenuItemComponent.js +1 -0
- package/lib/RcsbFvUI/AbstractMenuItemComponent.js.map +1 -0
- package/lib/RcsbFvUI/Components/FilterItemComponent.d.ts +0 -1
- package/lib/RcsbFvUI/Components/FilterItemComponent.js +1 -0
- package/lib/RcsbFvUI/Components/FilterItemComponent.js.map +1 -0
- package/lib/RcsbFvUI/Components/ItemComponent.js +1 -0
- package/lib/RcsbFvUI/Components/ItemComponent.js.map +1 -0
- package/lib/RcsbFvUI/Components/PaginationItemComponent.d.ts +1 -2
- package/lib/RcsbFvUI/Components/PaginationItemComponent.js +2 -1
- package/lib/RcsbFvUI/Components/PaginationItemComponent.js.map +1 -0
- package/lib/RcsbFvUI/GroupPfvUI.js +1 -0
- package/lib/RcsbFvUI/GroupPfvUI.js.map +1 -0
- package/lib/RcsbFvUI/Helper/ActionMethods.js +1 -0
- package/lib/RcsbFvUI/Helper/ActionMethods.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvAssemblyBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvAssemblyBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvContextManager.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvContextManager.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvCoreBuilder.js +2 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvCoreBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvDataProviderBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvDataProviderBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.js +6 -5
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js +6 -5
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.d.ts +0 -1
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js +4 -3
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvPairwiseAligmentBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvPairwiseAligmentBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js +6 -5
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js +3 -2
- package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/ComponentsManager.d.ts +0 -1
- package/lib/RcsbFvWeb/RcsbFvComponents/ComponentsManager.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/ComponentsManager.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/LoaderSpinner.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/LoaderSpinner.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/MountableComponent.js +6 -3
- package/lib/RcsbFvWeb/RcsbFvComponents/MountableComponent.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/RcsbTabs.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/RcsbTabs.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButton.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButton.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonManager.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonManager.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonTitle.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonTitle.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.d.ts +6 -6
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.js +7 -6
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.d.ts +4 -4
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockFactoryInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockFactoryInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.d.ts +3 -3
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.js +3 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.d.ts +2 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.js +3 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/BlockManagerInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/BlockManagerInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.d.ts +3 -3
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/RcsbFvTrackDataAnnotationInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/RcsbFvTrackDataAnnotationInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.d.ts +5 -5
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AnnotationsTrackFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AnnotationsTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.d.ts +3 -3
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.d.ts +4 -4
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.d.ts +5 -5
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.d.ts +4 -4
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.d.ts +4 -4
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.js +3 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js +2 -1
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.d.ts +5 -5
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.js +3 -2
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.d.ts +5 -5
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/InstanceSequenceTrackTitleFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/InstanceSequenceTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.d.ts +5 -5
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js +4 -3
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryInterface.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryInterface.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js +12 -11
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js +33 -26
- package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.js +1 -0
- package/lib/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts +6 -6
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.js +4 -3
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js +12 -11
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvDataProvider.js +2 -1
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvDataProvider.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js +5 -4
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js +11 -10
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAnnotation.js +7 -5
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAnnotation.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.js +4 -3
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.js.map +1 -0
- package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.d.ts +3 -3
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package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.js.map
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|
package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/BlockManagerInterface.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"BlockManagerInterface.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/BlockManagerInterface.ts"],"names":[],"mappings":""}
|
package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.d.ts
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
|
|
2
2
|
import { RcsbAnnotationConfigInterface } from "../../../../RcsbAnnotationConfig/AnnotationConfigInterface";
|
|
3
|
-
import {
|
|
3
|
+
import { Features, SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
4
4
|
import { AnnotationProcessingInterface } from "../../../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
|
|
5
5
|
import { RcsbFvTrackDataAnnotationInterface } from "../../RcsbFvTrackFactory/RcsbFvTrackDataAnnotationInterface";
|
|
6
6
|
export interface TrackManagerFactoryInterface<T extends any[]> {
|
|
@@ -16,9 +16,9 @@ export interface TrackManagerInterface {
|
|
|
16
16
|
addFeature(ann: {
|
|
17
17
|
reference: SequenceReference | undefined;
|
|
18
18
|
queryId: string;
|
|
19
|
-
source:
|
|
19
|
+
source: AnnotationReference;
|
|
20
20
|
targetId: string;
|
|
21
|
-
feature:
|
|
21
|
+
feature: Features;
|
|
22
22
|
}, annotationProcessing?: AnnotationProcessingInterface): void;
|
|
23
23
|
size(): number;
|
|
24
24
|
forEach(f: (ann: RcsbFvTrackDataAnnotationInterface, loc: string) => void): void;
|
package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"TrackManagerInterface.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.ts"],"names":[],"mappings":""}
|
package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/RcsbFvTrackDataAnnotationInterface.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"RcsbFvTrackDataAnnotationInterface.js","sourceRoot":"","sources":["../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/RcsbFvTrackDataAnnotationInterface.ts"],"names":[],"mappings":""}
|
package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.d.ts
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
2
2
|
import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
|
|
3
|
-
import {
|
|
3
|
+
import { AlignedRegions, TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
4
4
|
import { PolymerEntityInstanceTranslate, AlignmentContextInterface } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
5
5
|
import { TrackFactoryInterface } from "../TrackFactoryInterface";
|
|
6
6
|
import { AlignmentCollectConfig } from "../../../../RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface";
|
|
@@ -8,12 +8,12 @@ import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
|
|
|
8
8
|
export type AlignmentRequestContextType = AlignmentCollectConfig & {
|
|
9
9
|
querySequence?: string;
|
|
10
10
|
};
|
|
11
|
-
export declare class AlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType,
|
|
11
|
+
export declare class AlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
|
|
12
12
|
private readonly sequenceTrackFactory;
|
|
13
13
|
private readonly trackTitleFactory;
|
|
14
|
-
constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate, trackTitleFactory?: TrackTitleFactoryInterface<[AlignmentRequestContextType,
|
|
15
|
-
getTrack(alignmentRequestContext: AlignmentRequestContextType, targetAlignment:
|
|
14
|
+
constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate, trackTitleFactory?: TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignments]>);
|
|
15
|
+
getTrack(alignmentRequestContext: AlignmentRequestContextType, targetAlignment: TargetAlignments, alignedRegionToTrackElementList?: (region: AlignedRegions, alignmentContext: AlignmentContextInterface) => Array<RcsbFvTrackDataElementInterface>): Promise<RcsbFvRowConfigInterface>;
|
|
16
16
|
private getAlignmentTrackConfiguration;
|
|
17
|
-
alignedRegionToTrackElementList(region:
|
|
17
|
+
alignedRegionToTrackElementList(region: AlignedRegions, alignmentContext: AlignmentContextInterface): Array<RcsbFvTrackDataElementInterface>;
|
|
18
18
|
addAuthorResIds(e: RcsbFvTrackDataElementInterface, alignmentContext: AlignmentContextInterface): RcsbFvTrackDataElementInterface;
|
|
19
19
|
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"AlignmentTrackFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.ts"],"names":[],"mappings":";AAcA,OAAO,EAAC,YAAY,EAAC,MAAM,wDAAwD,CAAC;AACpF,OAAO,EAAC,oBAAoB,EAAC,MAAM,wBAAwB,CAAC;AAI5D,OAAO,EAAC,0BAA0B,EAAC,MAAM,qDAAqD,CAAC;AAC/F,OAAO,EAAC,UAAU,EAAC,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AACpE,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAMhD,MAAM,OAAO,qBAAqB;IAK9B,YAAY,wBAAyD,EAAE,iBAA8F;QACjK,IAAI,CAAC,oBAAoB,GAAG,IAAI,oBAAoB,CAAC,wBAAwB,CAAC,CAAC;QAC/E,IAAI,CAAC,iBAAiB,GAAG,iBAAiB,aAAjB,iBAAiB,cAAjB,iBAAiB,GAAI,IAAI,0BAA0B,CAAC,wBAAwB,CAAC,CAAC;IAC3G,CAAC;IAEY,QAAQ,CAAC,uBAAoD,EAAE,eAAiC,EAAE,+BAA8I;;YACzP,MAAM,EAAC,aAAa,EAAE,YAAY,EAAE,YAAY,EAAC,GAAG,IAAI,CAAC,8BAA8B,CAAC,uBAAuB,EAAE,eAAe,EAAE,+BAA+B,aAA/B,+BAA+B,cAA/B,+BAA+B,GAAI,IAAI,CAAC,+BAA+B,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;YACtN,MAAM,eAAe,GAAiC;gBAClD,WAAW,8CAA6B;gBACxC,YAAY,EAAE,SAAS;gBACvB,WAAW,EAAE,YAAY;aAC5B,CAAC;YACF,MAAM,eAAe,GAAiC;gBAClD,WAAW,oCAAwB;gBACnC,YAAY,EAAE,SAAS;gBACvB,WAAW,EAAE,YAAY;aAC5B,CAAC;YACF,MAAM,gBAAgB,GAAiC;gBACnD,WAAW,wCAA0B;gBACrC,YAAY,EAAE,SAAS;gBACvB,WAAW,EAAE,aAAa;aAC7B,CAAC;YACF,OAAO;gBACH,OAAO,EAAE,sBAAsB,GAAC,eAAe,CAAC,SAAS;gBACzD,WAAW,gDAA8B;gBACzC,OAAO,EAAE,IAAI;gBACb,UAAU,EAAE,SAAS;gBACrB,SAAS,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,mBAAmB,CAAC,uBAAuB,EAAC,eAAe,CAAC;gBACpG,QAAQ,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,aAAa,CAAC,uBAAuB,EAAC,eAAe,CAAC;gBAC7F,aAAa,EAAE,uBAAuB,CAAC,aAAa;gBACpD,cAAc,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,sBAAsB,CAAC,uBAAuB,EAAC,eAAe,CAAC;gBAC5G,aAAa,EAAE,CAAC,gBAAgB,EAAE,eAAe,EAAE,eAAe,CAAC;aACtE,CAAC;QAEN,CAAC;KAAA;IAEO,8BAA8B,CAElC,qBAAkD,EAClD,eAAiC,EACjC,+BAA4I;;QAI5I,aAAa,CAAC,qBAAqB,CAAC,OAAO,CAAC,EAAE,aAAa,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC;QACvF,MAAM,aAAa,GAA2C,EAAE,CAAC;QACjE,MAAM,YAAY,GAA2C,EAAE,CAAC;QAChE,MAAM,cAAc,GAAG,eAAe,CAAC,eAAe,CAAC;QACvD,MAAM,YAAY,GAA2C,EAAE,CAAC;QAChE,MAAM,gBAAgB,GAA8B;YAChD,OAAO,EAAE,qBAAqB,CAAC,OAAO;YACtC,QAAQ,EAAE,eAAe,CAAC,SAAS;YACnC,IAAI,EAAE,qBAAqB,CAAC,IAAI;YAChC,EAAE,EAAE,qBAAqB,CAAC,EAAE;YAC5B,oBAAoB,EAAE,MAAA,eAAe,CAAC,eAAe,0CAAE,MAAM;YAC7D,mBAAmB,EAAE,MAAA,qBAAqB,CAAC,aAAa,0CAAE,MAAM;SACnE,CAAC;QACF,MAAA,eAAe,CAAC,eAAe,0CAAE,OAAO,CAAC,MAAM,CAAC,EAAE;;YAC9C,aAAa,CAAC,MAAM,CAAC,CAAC;YACtB,MAAM,cAAc,GAAG,cAAc,IAAI,MAAM,CAAC,YAAY,IAAI,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,cAAc,CAAC,SAAS,CAAC,MAAM,CAAC,YAAY,GAAG,CAAC,EAAE,MAAM,CAAC,UAAU,CAAC,CAAC,CAAC,CAAC,EAAE,CAAC;YAC9J,IAAI,CAAC,oBAAoB,CAAC,iBAAiB,iCACpC,gBAAgB,KACnB,QAAQ,EAAE,cAAc,EACxB,KAAK,EAAE,MAAM,CAAC,WAAW,EACzB,QAAQ,EAAE,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,YAAY,KAC/B,IAAI,CAAC,CAAC,OAAO,CAAC,EAAE,CAAA,EAAE;gBACjB,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;YAC1B,CAAC,CAAC,CAAC;YAEH,+BAA+B,CAAC,MAAM,kCAC/B,gBAAgB,KACnB,oBAAoB,EAAE,MAAA,gBAAgB,CAAC,oBAAoB,mCAAI,MAAA,eAAe,CAAC,eAAe,0CAAE,MAAM,IACxG,CAAC,OAAO,CAAC,CAAC,CAAA,EAAE;gBACV,aAAa,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAC1B,CAAC,CAAC,CAAA;YAEF,IAAG,qBAAqB,CAAC,aAAa;gBAClC,YAAY,CAAC,cAAc,EAAE,qBAAqB,CAAC,aAAa,CAAC,SAAS,CAAC,MAAM,CAAC,WAAW,GAAG,CAAC,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;;oBAC9H,aAAa,CAAC,gBAAgB,CAAC,EAAE,CAAC,EAAE,aAAa,CAAC,qBAAqB,CAAC,EAAE,CAAC,CAAC;oBAC5E,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,oBAAoB,CAAC,eAAe,CAAC;wBACxD,KAAK,EAAE,CAAC,CAAC,GAAG,MAAM,CAAC,WAAW,CAAC;wBAC/B,QAAQ,EAAE,CAAC,CAAC,GAAG,MAAM,CAAC,YAAY,CAAC;wBACnC,QAAQ,EAAE,MAAA,eAAe,CAAC,SAAS,mCAAI,SAAS;wBAChD,MAAM,EAAE,UAAU,CAAC,yBAAyB,CAAC,gBAAgB,CAAC,QAAQ,EAAE,gBAAgB,CAAC,EAAE,CAAC;wBAC5F,cAAc,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAE,qBAAqB,CAAC,EAAE,CAAC,CAAC,IAAI;wBAClH,eAAe,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAE,qBAAqB,CAAC,EAAE,CAAC,CAAC,KAAK;wBACpH,IAAI,EAAE,UAAU;wBAChB,KAAK,EAAE,UAAU;qBACpB,EAAE,gBAAgB,CAAC,CAAC,CAAC;gBAC1B,CAAC,CAAC,CAAC;QACX,CAAC,CAAC,CAAC;QACH,YAAY,CAAC,WAAW,CAAC,aAAa,CAAC,CAAC;QACxC,OAAO,EAAC,aAAa,EAAE,YAAY,EAAE,YAAY,EAAC,CAAC;IACvD,CAAC;IAEM,+BAA+B,CAAC,MAAsB,EAAE,gBAA2C;QACtG,IAAI,SAAS,GAAG,KAAK,CAAC;QACtB,IAAI,MAAM,CAAC,YAAY,IAAI,CAAC;YACxB,SAAS,GAAG,IAAI,CAAC;QACrB,IAAI,OAAO,GAAG,KAAK,CAAC;QACpB,IAAI,gBAAgB,CAAC,oBAAoB,IAAI,MAAM,CAAC,UAAU,IAAI,gBAAgB,CAAC,oBAAoB;YACnG,OAAO,GAAG,IAAI,CAAC;QAEnB,aAAa,CAAC,gBAAgB,CAAC,EAAE,CAAC,CAAA;QAClC,OAAO,CAAC,IAAI,CAAC,oBAAoB,CAAC,eAAe,CAAC;gBAC9C,KAAK,EAAE,MAAM,CAAC,WAAW;gBACzB,GAAG,EAAE,MAAM,CAAC,SAAS;gBACrB,QAAQ,EAAE,MAAM,CAAC,YAAY;gBAC7B,MAAM,EAAE,MAAM,CAAC,UAAU;gBACzB,QAAQ,EAAE,gBAAgB,CAAC,QAAQ;gBACnC,MAAM,EAAE,UAAU,CAAC,yBAAyB,CAAC,gBAAgB,CAAC,QAAQ,EAAE,gBAAgB,CAAC,EAAE,CAAC;gBAC5F,cAAc,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC,IAAI;gBAC5G,eAAe,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC,KAAK;gBAC9G,SAAS,EAAE,SAAS;gBACpB,OAAO,EAAE,OAAO;gBAChB,IAAI,EAAE,eAAe;gBACrB,KAAK,EAAE,gBAAgB;aAC1B,EAAE,gBAAgB,CAAC,CAAC,CAAC;IAE1B,CAAC;IAEM,eAAe,CAAC,CAAiC,EAAE,gBAA0C;QAChG,OAAO,IAAI,CAAC,oBAAoB,CAAC,eAAe,CAAC,CAAC,EAAC,gBAAgB,CAAC,CAAC;IACzE,CAAC;CAEJ;AAED,SAAS,YAAY,CAAC,IAAY,EAAE,IAAY;IAC5C,MAAM,GAAG,GAAkB,EAAE,CAAC;IAC9B,IAAI,IAAI,CAAC,MAAM,KAAK,IAAI,CAAC,MAAM,EAAE,CAAC;QAC9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YACnC,IAAI,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC;gBACpC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAChB,CAAC;QACL,CAAC;IACL,CAAC;SAAI,CAAC;QACF,OAAO,CAAC,KAAK,CAAC,uEAAuE,CAAC,CAAA;IAC1F,CAAC;IACD,OAAO,GAAG,CAAC;AACf,CAAC"}
|
package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AnnotationsTrackFactory.js
CHANGED
|
@@ -143,3 +143,4 @@ function buildRcsbFvRowConfigTrack(annotationTrack, type, rcsbAnnotationConfig)
|
|
|
143
143
|
}
|
|
144
144
|
return Object.assign(Object.assign({}, rcsbAnnotationConfig), { trackId: "annotationTrack_" + type, displayType: displayType, trackColor: "#F9F9F9", displayColor: displayColor, trackData: data });
|
|
145
145
|
}
|
|
146
|
+
//# sourceMappingURL=AnnotationsTrackFactory.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"AnnotationsTrackFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AnnotationsTrackFactory.ts"],"names":[],"mappings":";AAcA,OAAO,EAAC,oBAAoB,EAAC,MAAM,uDAAuD,CAAC;AAG3F,OAAO,EAAC,4BAA4B,EAAC,MAAM,uDAAuD,CAAC;AACnG,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AACpE,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAEhD,MAAM,OAAO,uBAAuB;IAIhC,YAAY,iBAAuE;QAC/E,IAAI,CAAC,iBAAiB,GAAG,iBAAiB,aAAjB,iBAAiB,cAAjB,iBAAiB,GAAI,IAAI,4BAA4B,EAAE,CAAC;IACrF,CAAC;IAEK,QAAQ,CAAC,WAAkC;;YAC7C,IAAI,GAA6B,CAAC;YAClC,MAAM,IAAI,GAAW,WAAW,CAAC,KAAK,EAAE,CAAC;YACzC,MAAM,oBAAoB,GAA2C,WAAW,CAAC,SAAS,EAAE,CAAC;YAC7F,IAAI,WAA+B,CAAC;YACpC,MAAM,SAAS,GAA8C,oBAAoB,CAAC;YAClF,IAAI,SAAS,IAAI,IAAI,EAAE,CAAC;gBACpB,WAAW,GAAG,SAAS,aAAT,SAAS,uBAAT,SAAS,CAAE,OAAO,CAAC;YACrC,CAAC;YACD,QAAQ,WAAW,EAAC,CAAC;gBACjB,oDAAkC;gBAClC,0CAA6B;gBAC7B;oBACI,aAAa,CAAC,oBAAoB,CAAC,CAAA;oBACnC,GAAG,GAAG,6BAA6B,CAAC,WAAW,EAAC,IAAI,EAAE,oBAAoB,CAAC,CAAC;oBAC5E,MAAM;gBACV,0CAA6B;gBAC7B;oBACI,aAAa,CAAC,oBAAoB,CAAC,CAAA;oBACnC,GAAG,GAAG,wBAAwB,CAAC,WAAW,EAAC,IAAI,EAAE,oBAAoB,CAAC,CAAC;oBACvE,MAAM;gBACV;oBACI,aAAa,CAAC,oBAAoB,CAAC,CAAA;oBACnC,GAAG,GAAG,6BAA6B,CAAC,WAAW,EAAC,IAAI,EAAE,oBAAoB,CAAC,CAAC;oBAC5E,MAAM;gBACV;oBACI,GAAG,GAAG,yBAAyB,CAAC,WAAW,EAAC,IAAI,EAAE,oBAAoB,CAAC,CAAC;oBACxE,MAAM;YACd,CAAC;YACD,IAAG,SAAS,IAAE,IAAI,IAAI,OAAO,SAAS,CAAC,MAAM,KAAK,QAAQ,EAAC,CAAC;gBACxD,GAAG,CAAC,WAAW,GAAG,SAAS,CAAC,MAAM,CAAC;YACvC,CAAC;YACD,uCACO,GAAG,KACN,cAAc,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,sBAAsB,CAAC,WAAW,CAAC,EAChF,QAAQ,EAAE,MAAO,IAAI,CAAC,iBAAiB,CAAC,aAAa,CAAC,WAAW,CAAC,EAClE,SAAS,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,mBAAmB,CAAC,WAAW,CAAC,IAC1E;QACN,CAAC;KAAA;CAEJ;AAED,SAAS,wBAAwB,CAAC,eAAsC,EAAE,IAAY,EAAE,oBAAmD;;IACvI,MAAM,IAAI,GAA2C,eAAe,CAAC,MAAM,EAAE,CAAC;IAC9E,MAAM,SAAS,GAA8C,oBAAoB,CAAC;IAClF,MAAM,WAAW,GAAmC,SAAS,aAAT,SAAS,uBAAT,SAAS,CAAE,OAAO,CAAC;IACvE,MAAM,YAAY,GAA0C,SAAS,aAAT,SAAS,uBAAT,SAAS,CAAE,KAAK,CAAC;IAE7E,IAAI,GAAG,GAAW,eAAe,CAAC,QAAQ,EAAE,CAAC,GAAG,CAAC;IACjD,IAAI,GAAG,GAAW,eAAe,CAAC,QAAQ,EAAE,CAAC,GAAG,CAAC;IAEjD,IAAG,GAAG,IAAE,CAAC;QACL,GAAG,GAAC,CAAC,CAAC;SACL,IAAG,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC,GAAC,IAAI,CAAC,GAAG,CAAC,GAAG,CAAC;QAC/B,GAAG,GAAG,CAAC,GAAG,CAAC;;QAEX,GAAG,GAAG,CAAC,GAAG,CAAC;IACf,MAAM,MAAM,GAAoB,MAAA,SAAS,aAAT,SAAS,uBAAT,SAAS,CAAE,MAAM,mCAAI,CAAC,GAAG,EAAC,GAAG,CAAC,CAAC;IAE/D,uCACO,oBAAoB,KACvB,OAAO,EAAE,kBAAkB,GAAG,IAAI,EAClC,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,IAAI,EACb,UAAU,EAAE,SAAS,EACrB,YAAY,EAAE,YAAY,EAC1B,aAAa,EAAC,MAAM,EACpB,iBAAiB,wCACjB,SAAS,EAAE,IAAI,IACjB;AACN,CAAC;AAED,SAAS,6BAA6B,CAAC,eAAsC,EAAE,IAAY,EAAE,oBAAmD;;IAC5I,MAAM,IAAI,GAA2C,eAAe,CAAC,MAAM,EAAE,CAAC;IAC9E,MAAM,SAAS,GAAkC,oBAAoB,CAAC;IACtE,MAAM,WAAW,GAAuB,SAAS,CAAC,OAAO,CAAC;IAC1D,MAAM,YAAY,GAA8B,MAAA,SAAS,CAAC,KAAK,mCAAI,oBAAoB,CAAC,UAAU,EAAE,CAAC;IAErG,uCACO,oBAAoB,KACvB,OAAO,EAAE,kBAAkB,GAAG,IAAI,EAClC,WAAW,EAAE,WAAW,EACxB,OAAO,EAAE,IAAI,EACb,UAAU,EAAE,SAAS,EACrB,YAAY,EAAE,YAAY,EAC1B,aAAa,EAAC,CAAC,CAAC,EAAC,CAAC,CAAC,EACnB,iBAAiB,wCACjB,SAAS,EAAE,IAAI,IACjB;AACN,CAAC;AAED,SAAS,6BAA6B,CAAC,eAAsC,EAAE,IAAY,EAAE,oBAAmD;;IAC5I,MAAM,IAAI,GAA2C,eAAe,CAAC,MAAM,EAAE,CAAC;IAC9E,IAAI,GAAG,GAAyC,SAAS,CAAC;IAE1D,MAAM,SAAS,GAAkC,oBAAoB,CAAC;IACtE,IAAI,cAAc,yCAA2B,CAAC;IAC9C,IAAG,SAAS,CAAC,OAAO,KAAK,qCAAwB,QAAQ,EAAE,EAAE,CAAC;QAC1D,cAAc,uCAA0B,CAAC;QACzC,IAAI,CAAC,OAAO,CAAC,CAAC,CAAA,EAAE;YACZ,CAAC,CAAC,OAAO,GAAG,IAAI,CAAC;QACrB,CAAC,CAAC,CAAC;IACP,CAAC;IACD,MAAM,YAAY,GAAG,MAAA,SAAS,CAAC,KAAK,mCAAI,oBAAoB,CAAC,UAAU,EAAE,CAAC;IAE1E,MAAM,GAAG,GAA2C,IAAI,KAAK,EAAmC,CAAC;IACjG,MAAM,MAAM,GAA2C,IAAI,KAAK,EAAmC,CAAC;IACpG,IAAI,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;QACb,IAAI,CAAC,CAAC,GAAG,KAAK,IAAI,IAAI,CAAC,CAAC,GAAG,KAAK,CAAC,CAAC,KAAK,EAAE,CAAC;YACtC,MAAM,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACnB,CAAC;aAAM,CAAC;YACJ,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QAChB,CAAC;IACL,CAAC,CAAC,CAAC;IAEH,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC,IAAI,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACtC,MAAM,aAAa,GAAwC,IAAI,KAAK,EAAgC,CAAC;QACrG,aAAa,CAAC,IAAI,CAAC;YACf,WAAW,EAAE,MAAM;YACnB,WAAW,EAAE,cAAc;YAC3B,YAAY,EAAE,YAAY;SACG,CAAC,CAAC;QACnC,aAAa,CAAC,IAAI,CAAC;YACf,WAAW,EAAE,GAAG;YAChB,WAAW,oCAAwB;YACnC,YAAY,EAAE,YAAY;SACG,CAAC,CAAC;QACnC,GAAG,GAAG;YACF,WAAW,gDAA8B;YACzC,UAAU,EAAE,SAAS;YACrB,OAAO,EAAE,kBAAkB,GAAG,IAAI;YAClC,aAAa,EAAE,aAAa;SAC/B,CAAC;IACN,CAAC;SAAM,IAAI,GAAG,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;QACxB,cAAc,qCAAyB,CAAC;IAC5C,CAAC;IACD,IAAG,GAAG,IAAI,SAAS,EAAC,CAAC;QACjB,GAAG,GAAG;YACF,OAAO,EAAE,kBAAkB,GAAG,IAAI;YAClC,WAAW,EAAE,cAAc;YAC3B,UAAU,EAAE,SAAS;YACrB,YAAY,EAAE,YAAY;YAC1B,SAAS,EAAE,IAAI;SAClB,CAAC;IACN,CAAC;IACD,OAAO,GAAG,CAAC;AACf,CAAC;AAED,SAAS,yBAAyB,CAAC,eAAsC,EAAE,IAAY,EAAE,oBAAoD;IACzI,MAAM,IAAI,GAA2C,eAAe,CAAC,MAAM,EAAE,CAAC;IAC9E,IAAI,WAAW,yCAA+C,CAAC;IAC/D,IAAI,IAAI,CAAC,MAAM,GAAG,CAAC,IAAI,IAAI,CAAC,CAAC,CAAC,CAAC,GAAG,IAAI,IAAI,EAAE,CAAC;QACzC,WAAW,qCAAyB,CAAC;IACzC,CAAC;IACD,IAAI,YAAY,GAA+B,oBAAoB,CAAC,UAAU,EAAE,CAAC;IAEjF,MAAM,SAAS,GAA8C,oBAAoB,CAAC;IAClF,IAAI,SAAS,IAAI,IAAI,EAAE,CAAC;QACpB,WAAW,GAAG,SAAS,CAAC,OAAO,CAAC;QAChC,IAAG,SAAS,CAAC,KAAK;YACd,YAAY,GAAG,SAAS,CAAC,KAAK,CAAC;IACvC,CAAC;SAAM,CAAC;QACJ,OAAO,CAAC,IAAI,CAAC,yBAAyB,GAAG,IAAI,GAAG,iCAAiC,CAAC,CAAC;IACvF,CAAC;IACD,uCACO,oBAAoB,KACvB,OAAO,EAAE,kBAAkB,GAAG,IAAI,EAClC,WAAW,EAAE,WAAW,EACxB,UAAU,EAAE,SAAS,EACrB,YAAY,EAAE,YAAY,EAC1B,SAAS,EAAE,IAAI,IACjB;AACN,CAAC"}
|
package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.d.ts
CHANGED
|
@@ -1,9 +1,9 @@
|
|
|
1
|
-
import { SequenceReference,
|
|
1
|
+
import { SequenceReference, AnnotationReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
2
2
|
export declare namespace TrackUtils {
|
|
3
|
-
function getProvenanceConfigFormTarget(targetId: string, targetSource: SequenceReference |
|
|
3
|
+
function getProvenanceConfigFormTarget(targetId: string, targetSource: SequenceReference | AnnotationReference): {
|
|
4
4
|
name: string;
|
|
5
5
|
color: string;
|
|
6
6
|
};
|
|
7
|
-
function transformSourceFromTarget(targetId: string, source: SequenceReference |
|
|
7
|
+
function transformSourceFromTarget(targetId: string, source: SequenceReference | AnnotationReference): string;
|
|
8
8
|
function getProvenanceColorFromProvenance(provenance?: string): string;
|
|
9
9
|
}
|
package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.js.map
ADDED
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"TrackUtils.js","sourceRoot":"","sources":["../../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.ts"],"names":[],"mappings":"AAAA,OAAO,EAAC,uBAAuB,EAAC,MAAM,6DAA6D,CAAC;AAEpG,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAE/E,MAAM,KAAW,UAAU,CAiC1B;AAjCD,WAAiB,UAAU;IAEvB,SAAgB,6BAA6B,CAAC,QAAgB,EAAE,YAAmD;QAC/G,IAAG,YAAY,CAAC,QAAQ,CAAC,QAAQ,CAAC;YAC9B,OAAO;gBACH,IAAI,EAAE,uBAAuB,CAAC,cAAc,CAAC,GAAG;gBAChD,KAAK,EAAE,uBAAuB,CAAC,mBAAmB,CAAC,OAAO;aAC7D,CAAA;aACA,IAAG,YAAY,CAAC,OAAO,CAAC,QAAQ,CAAC;YAClC,OAAM;gBACF,IAAI,EAAE,uBAAuB,CAAC,cAAc,CAAC,GAAG;gBAChD,KAAK,EAAE,uBAAuB,CAAC,mBAAmB,CAAC,GAAG;aACzD,CAAA;;YAED,OAAM;gBACF,IAAI,EAAE,YAAY;gBAClB,KAAK,EAAE,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ;aAC9D,CAAA;IACT,CAAC;IAhBe,wCAA6B,gCAgB5C,CAAA;IAED,SAAgB,yBAAyB,CAAC,QAAgB,EAAE,MAA6C;QACrG,IAAG,YAAY,CAAC,OAAO,CAAC,QAAQ,CAAC,IAAI,MAAM,CAAC,QAAQ,CAAC,MAAM,CAAC;YACxD,OAAO,MAAM,CAAC,OAAO,CAAC,MAAM,EAAC,MAAM,CAAC,CAAC;;YAErC,OAAO,MAAM,CAAA;IACrB,CAAC;IALe,oCAAyB,4BAKxC,CAAA;IAED,SAAgB,gCAAgC,CAAC,UAAmB;QAChE,IAAG,UAAU,KAAK,uBAAuB,CAAC,cAAc,CAAC,GAAG,IAAI,UAAU,KAAK,uBAAuB,CAAC,cAAc,CAAC,QAAQ;YAC1H,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,OAAO,CAAC;QAC/D,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ,CAAC;IAChE,CAAC;IAJe,2CAAgC,mCAI/C,CAAA;AAEL,CAAC,EAjCgB,UAAU,KAAV,UAAU,QAiC1B"}
|
|
@@ -1,12 +1,12 @@
|
|
|
1
1
|
import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
2
2
|
import { TrackFactoryInterface } from "../TrackFactoryInterface";
|
|
3
3
|
import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
|
|
4
|
-
import {
|
|
4
|
+
import { SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
5
5
|
import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
6
|
-
export declare class MsaAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType,
|
|
6
|
+
export declare class MsaAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
|
|
7
7
|
private observedAlignmentTrackFactory;
|
|
8
8
|
private positionalScoreAlignmentTrackFactory;
|
|
9
9
|
constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
|
|
10
|
-
getTrack(alignmentQueryContext: AlignmentRequestContextType, targetAlignment:
|
|
11
|
-
prepareFeatures(unObservedRegions: Array<
|
|
10
|
+
getTrack(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<RcsbFvRowConfigInterface>;
|
|
11
|
+
prepareFeatures(unObservedRegions: Array<SequenceAnnotations>, positionalScores: Array<SequenceAnnotations>): Promise<void>;
|
|
12
12
|
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"MsaAlignmentTrackFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.ts"],"names":[],"mappings":";AAKA,OAAO,EAAC,oCAAoC,EAAC,MAAM,wCAAwC,CAAC;AAE5F,OAAO,EAAC,kCAAkC,EAAC,MAAM,sCAAsC,CAAC;AACxF,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAE/E,MAAM,OAAO,wBAAwB;IAKjC,YAAY,wBAAyD;QACjE,IAAI,CAAC,6BAA6B,GAAG,IAAI,kCAAkC,CAAC,wBAAwB,CAAC,CAAC;QACtG,IAAI,CAAC,oCAAoC,GAAG,IAAI,oCAAoC,CAAC,wBAAwB,CAAC,CAAC;IACnH,CAAC;IAEY,QAAQ,CAAC,qBAAkD,EAAE,eAAiC;;YACvG,IAAG,eAAe,CAAC,SAAS,IAAI,YAAY,CAAC,oBAAoB,CAAC,eAAe,CAAC,SAAS,CAAC;gBACxF,OAAO,IAAI,CAAC,6BAA6B,CAAC,QAAQ,CAAC,qBAAqB,EAAC,eAAe,CAAC,CAAC;;gBAE1F,OAAO,IAAI,CAAC,oCAAoC,CAAC,QAAQ,CAAC,qBAAqB,EAAC,eAAe,CAAC,CAAC;QACzG,CAAC;KAAA;IAEY,eAAe,CAAC,iBAA6C,EAAE,gBAA4C;;YACpH,MAAM,IAAI,CAAC,6BAA6B,CAAC,eAAe,CAAC,iBAAiB,CAAC,CAAC;YAC5E,MAAM,IAAI,CAAC,oCAAoC,CAAC,eAAe,CAAC,gBAAgB,CAAC,CAAC;QACtF,CAAC;KAAA;CAEJ"}
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
import { RcsbFvColorGradient, RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
|
|
2
2
|
import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
3
|
-
import {
|
|
3
|
+
import { AlignedRegions, TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
4
4
|
import { PolymerEntityInstanceTranslate, AlignmentContextInterface } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
5
5
|
import { TrackFactoryInterface } from "../TrackFactoryInterface";
|
|
6
6
|
import { AlignmentCollectConfig } from "../../../../RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface";
|
|
@@ -8,16 +8,16 @@ import { RcsbFvTrackDataAnnotationInterface } from "../RcsbFvTrackDataAnnotation
|
|
|
8
8
|
export type AlignmentRequestContextType = AlignmentCollectConfig & {
|
|
9
9
|
querySequence?: string;
|
|
10
10
|
};
|
|
11
|
-
export declare class PlainAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType,
|
|
11
|
+
export declare class PlainAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
|
|
12
12
|
private readonly sequenceTrackFactory;
|
|
13
13
|
private readonly trackTitleFactory;
|
|
14
14
|
constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
|
|
15
|
-
getTrack(alignmentRequestContext: AlignmentRequestContextType, targetAlignment:
|
|
16
|
-
getAlignmentTrackConfiguration(alignmentQueryContext: AlignmentRequestContextType, targetAlignment:
|
|
15
|
+
getTrack(alignmentRequestContext: AlignmentRequestContextType, targetAlignment: TargetAlignments, alignedRegionToTrackElementList?: (region: AlignedRegions, alignmentContext: AlignmentContextInterface) => Array<RcsbFvTrackDataElementInterface>, alignmentColor?: RcsbFvColorGradient): Promise<RcsbFvRowConfigInterface>;
|
|
16
|
+
getAlignmentTrackConfiguration(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments, alignedRegionToTrackElementList: (region: AlignedRegions, alignmentContext: AlignmentContextInterface) => Array<RcsbFvTrackDataElementInterface>): {
|
|
17
17
|
alignedBlocks: Array<RcsbFvTrackDataElementInterface>;
|
|
18
18
|
mismatchData: Array<RcsbFvTrackDataElementInterface>;
|
|
19
19
|
sequenceData: Array<RcsbFvTrackDataElementInterface>;
|
|
20
20
|
};
|
|
21
|
-
alignedRegionToTrackElementList(region:
|
|
21
|
+
alignedRegionToTrackElementList(region: AlignedRegions, alignmentContext: AlignmentContextInterface): Array<RcsbFvTrackDataElementInterface>;
|
|
22
22
|
addAuthorResIds(e: RcsbFvTrackDataAnnotationInterface, alignmentContext: AlignmentContextInterface): RcsbFvTrackDataElementInterface;
|
|
23
23
|
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"PlainAlignmentTrackFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.ts"],"names":[],"mappings":";AAiBA,OAAO,EAAC,oBAAoB,EAAC,MAAM,wBAAwB,CAAC;AAG5D,OAAO,EAAC,KAAK,EAAC,MAAM,QAAQ,CAAC;AAE7B,OAAO,EAAC,0BAA0B,EAAC,MAAM,qDAAqD,CAAC;AAC/F,OAAO,EAAC,UAAU,EAAC,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AACpE,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAKhD,MAAM,OAAO,0BAA0B;IAKnC,YAAY,wBAAyD;QACjE,IAAI,CAAC,oBAAoB,GAAG,IAAI,oBAAoB,CAAC,wBAAwB,CAAC,CAAC;QAC/E,IAAI,CAAC,iBAAiB,GAAG,IAAI,0BAA0B,CAAC,wBAAwB,CAAC,CAAC;IACtF,CAAC;IAEY,QAAQ,CACjB,uBAAoD,EACpD,eAAiC,EACjC,+BAA8I,EAC9I,cAAmC;;YAGnC,MAAM,EAAC,aAAa,EAAE,YAAY,EAAE,YAAY,EAAC,GAAG,IAAI,CAAC,8BAA8B,CACnF,uBAAuB,EACvB,eAAe,EACf,+BAA+B,aAA/B,+BAA+B,cAA/B,+BAA+B,GAAI,IAAI,CAAC,+BAA+B,CAAC,IAAI,CAAC,IAAI,CAAC,CACrF,CAAC;YACF,MAAM,eAAe,GAAiC;gBAClD,WAAW,8CAA6B;gBACxC,YAAY,EAAE,SAAS;gBACvB,WAAW,EAAE,YAAY;aAC5B,CAAC;YACF,MAAM,eAAe,GAAiC;gBAClD,WAAW,oCAAwB;gBACnC,YAAY,EAAE,SAAS;gBACvB,WAAW,EAAE,YAAY;aAC5B,CAAC;YACF,MAAM,gBAAgB,GAAiC;gBACnD,WAAW,kDAA+B;gBAC1C,YAAY,EAAE,cAAc,aAAd,cAAc,cAAd,cAAc,GAAI;oBAC5B,MAAM,EAAE,CAAC,SAAS,EAAC,SAAS,CAAC;oBAC7B,UAAU,EAAE,CAAC,EAAE,CAAC;iBACnB;gBACD,WAAW,EAAE,aAAa;aAC7B,CAAC;YACF,OAAO;gBACH,OAAO,EAAE,sBAAsB,GAAC,eAAe,CAAC,SAAS;gBACzD,WAAW,gDAA8B;gBACzC,OAAO,EAAE,IAAI;gBACb,UAAU,EAAE,SAAS;gBACrB,QAAQ,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,aAAa,CAAC,uBAAuB,EAAC,eAAe,CAAC;gBAC7F,aAAa,EAAE,uBAAuB,CAAC,aAAa;gBACpD,cAAc,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,sBAAsB,CAAC,uBAAuB,EAAC,eAAe,CAAC;gBAC5G,aAAa,EAAE,CAAC,gBAAgB,EAAE,eAAe,EAAE,eAAe,CAAC;aACtE,CAAC;QAEN,CAAC;KAAA;IAEM,8BAA8B,CAEjC,qBAAkD,EAClD,eAAiC,EACjC,+BAA4I;;QAI5I,MAAM,aAAa,GAA2C,EAAE,CAAC;QACjE,MAAM,YAAY,GAA2C,EAAE,CAAC;QAChE,MAAM,cAAc,GAAG,eAAe,CAAC,eAAe,CAAC;QACvD,MAAM,YAAY,GAA2C,EAAE,CAAC;QAChE,MAAM,OAAO,GAAG,MAAA,qBAAqB,CAAC,OAAO,mCAAI,qBAAqB,CAAC,OAAO,CAAC;QAC/E,aAAa,CAAC,OAAO,CAAC,EAAE,aAAa,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC;QACjE,MAAM,gBAAgB,GAA8B;YAChD,OAAO;YACP,QAAQ,EAAE,eAAe,CAAC,SAAS;YACnC,IAAI,EAAE,qBAAqB,CAAC,IAAI;YAChC,EAAE,EAAE,qBAAqB,CAAC,EAAE;YAC5B,oBAAoB,EAAE,MAAA,eAAe,CAAC,eAAe,0CAAE,MAAM;YAC7D,mBAAmB,EAAE,MAAA,qBAAqB,CAAC,aAAa,0CAAE,MAAM;SACnE,CAAC;QACF,MAAA,eAAe,CAAC,eAAe,0CAAE,OAAO,CAAC,MAAM,CAAC,EAAE;YAC9C,IAAG,CAAC,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,YAAY,CAAA,IAAI,CAAC,CAAA,MAAM,aAAN,MAAM,uBAAN,MAAM,CAAE,UAAU,CAAA;gBAC3C,OAAO;YACX,MAAM,cAAc,GAAG,cAAc,aAAd,cAAc,uBAAd,cAAc,CAAE,SAAS,CAAC,MAAM,CAAC,YAAY,GAAG,CAAC,EAAE,MAAM,CAAC,UAAU,CAAC,CAAC;YAC7F,IAAG,cAAc;gBACb,IAAI,CAAC,oBAAoB,CAAC,iBAAiB,iCACpC,gBAAgB,KACnB,QAAQ,EAAE,cAAc,EACxB,KAAK,EAAE,MAAM,CAAC,WAAW,EACzB,QAAQ,EAAE,MAAM,CAAC,YAAY,KAC9B,IAAI,CAAC,CAAC,OAAO,CAAC,EAAE,CAAA,EAAE;oBACjB,YAAY,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;gBAC1B,CAAC,CAAC,CAAC;YAEP,+BAA+B,CAAC,MAAM,EAAE,gBAAgB,CAAC,CAAC,OAAO,CAAC,CAAC,CAAA,EAAE;gBACjE,aAAa,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAC1B,CAAC,CAAC,CAAA;YAEF,IAAG,cAAc,IAAI,qBAAqB,CAAC,aAAa;gBACpD,YAAY,CAAC,cAAc,EAAE,qBAAqB,CAAC,aAAa,CAAC,SAAS,CAAC,MAAM,CAAC,WAAW,GAAG,CAAC,EAAE,MAAM,CAAC,SAAS,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE;oBAC9H,IAAG,qBAAqB,CAAC,aAAa,IAAI,eAAe,CAAC,SAAS,IAAI,gBAAgB,CAAC,EAAE;wBACtF,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,oBAAoB,CAAC,eAAe,CAAC;4BACxD,KAAK,EAAE,CAAC,CAAC,GAAG,MAAM,CAAC,WAAW,CAAC;4BAC/B,QAAQ,EAAE,CAAC,CAAC,GAAG,MAAM,CAAC,YAAY,CAAC;4BACnC,QAAQ,EAAE,eAAe,CAAC,SAAS;4BACnC,MAAM,EAAE,UAAU,CAAC,yBAAyB,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC;4BAC3F,cAAc,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC,IAAI;4BAC5G,eAAe,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC,KAAK;4BAC9G,IAAI,EAAE,UAAU;4BAChB,KAAK,EAAE,UAAU;yBACpB,EAAE,gBAAgB,CAAC,CAAC,CAAC;gBAC9B,CAAC,CAAC,CAAC;QACX,CAAC,CAAC,CAAC;QACH,OAAO,EAAC,aAAa,EAAE,YAAY,EAAE,YAAY,EAAC,CAAC;IACvD,CAAC;IAEM,+BAA+B,CAAC,MAAsB,EAAE,gBAA2C;QACtG,IAAI,SAAS,GAAG,KAAK,CAAC;QACtB,IAAI,MAAM,CAAC,YAAY,IAAI,CAAC;YACxB,SAAS,GAAG,IAAI,CAAC;QACrB,IAAI,OAAO,GAAG,KAAK,CAAC;QACpB,IAAI,MAAM,CAAC,UAAU,IAAI,gBAAgB,CAAC,oBAAoB,IAAI,gBAAgB,CAAC,mBAAmB;YAClG,OAAO,GAAG,IAAI,CAAC;QAEnB,OAAO,KAAK,CAAC,MAAM,CAAC,WAAW,EAAC,MAAM,CAAC,SAAS,GAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAC,CAAC,EAAC,EAAE;YAC3D,aAAa,CAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC;YACnC,OAAO,IAAI,CAAC,eAAe,CAAC;gBACxB,KAAK,EAAE,CAAC;gBACR,QAAQ,EAAE,MAAM,CAAC,YAAY,GAAC,CAAC;gBAC/B,QAAQ,EAAE,gBAAgB,CAAC,QAAQ;gBACnC,MAAM,EAAE,UAAU,CAAC,yBAAyB,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC;gBAC3F,cAAc,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC,IAAI;gBAC5G,eAAe,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC,KAAK;gBAC9G,SAAS,EAAE,SAAS;gBACpB,OAAO,EAAE,OAAO;gBAChB,IAAI,EAAE,eAAe;gBACrB,KAAK,EAAE,gBAAgB;gBACvB,KAAK,EAAC,GAAG;aACZ,EAAE,gBAAgB,CAAC,CAAA;QACxB,CAAC,CAAC,CAAC;IAEP,CAAC;IAEM,eAAe,CAAC,CAAoC,EAAE,gBAA0C;QACnG,OAAO,IAAI,CAAC,oBAAoB,CAAC,eAAe,CAAC,CAAC,EAAC,gBAAgB,CAAC,CAAC;IACzE,CAAC;CAEJ;AAED,SAAS,YAAY,CAAC,IAAY,EAAE,IAAY;IAC5C,MAAM,GAAG,GAAkB,EAAE,CAAC;IAC9B,IAAI,IAAI,CAAC,MAAM,KAAK,IAAI,CAAC,MAAM,EAAE,CAAC;QAC9B,KAAK,IAAI,CAAC,GAAG,CAAC,EAAE,CAAC,GAAG,IAAI,CAAC,MAAM,EAAE,CAAC,EAAE,EAAE,CAAC;YACnC,IAAI,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,KAAK,IAAI,CAAC,MAAM,CAAC,CAAC,CAAC,EAAE,CAAC;gBACpC,GAAG,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;YAChB,CAAC;QACL,CAAC;IACL,CAAC;IACD,OAAO,GAAG,CAAC;AACf,CAAC"}
|
|
@@ -1,16 +1,16 @@
|
|
|
1
1
|
import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
2
|
-
import {
|
|
2
|
+
import { SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
3
3
|
import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
4
4
|
import { TrackFactoryInterface } from "../TrackFactoryInterface";
|
|
5
5
|
import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
|
|
6
|
-
export declare class PlainObservedAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType,
|
|
6
|
+
export declare class PlainObservedAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
|
|
7
7
|
private alignmentTrackFactory;
|
|
8
8
|
private unObservedResidues;
|
|
9
9
|
private readonly instanceEntityMap;
|
|
10
10
|
private readonly entityInstanceNumberMap;
|
|
11
11
|
constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
|
|
12
|
-
getTrack(alignmentRequestContext: AlignmentRequestContextType, targetAlignment:
|
|
13
|
-
prepareFeatures(unObservedRegions: Array<
|
|
12
|
+
getTrack(alignmentRequestContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<RcsbFvRowConfigInterface>;
|
|
13
|
+
prepareFeatures(unObservedRegions: Array<SequenceAnnotations>): Promise<void>;
|
|
14
14
|
private collectFeatureEntryProperties;
|
|
15
15
|
private prepareFeaturesAlignmentMap;
|
|
16
16
|
private alignedRegionToTrackElementList;
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"PlainObservedAlignmentTrackFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.ts"],"names":[],"mappings":";AAcA,OAAO,EAAC,QAAQ,EAAC,MAAM,wCAAwC,CAAC;AAEhE,OAAO,EAAC,KAAK,EAAC,MAAM,QAAQ,CAAC;AAC7B,OAAO,EAAC,0BAA0B,EAAC,MAAM,8BAA8B,CAAC;AACxE,OAAO,EAAC,UAAU,EAAC,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAC,qBAAqB,EAAC,MAAM,mDAAmD,CAAC;AAExF,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AACpE,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAE/E,MAAM,OAAO,kCAAkC;IAQ3C,YAAY,wBAAyD;QAL7D,uBAAkB,GAA8B,IAAI,GAAG,EAAyB,CAAC;QAExE,sBAAiB,GAAuB,IAAI,GAAG,EAAkB,CAAC;QAClE,4BAAuB,GAAuB,IAAI,GAAG,EAAkB,CAAC;QAGrF,IAAI,CAAC,qBAAqB,GAAG,IAAI,0BAA0B,CAAC,wBAAwB,CAAC,CAAC;IAC1F,CAAC;IAEY,QAAQ,CAAC,uBAAoD,EAAE,eAAiC;;YACzG,OAAO,IAAI,CAAC,qBAAqB,CAAC,QAAQ,CAAC,uBAAuB,EAAE,eAAe,EAAE,IAAI,CAAC,+BAA+B,CAAC,IAAI,CAAC,IAAI,CAAC,CAAC,CAAC;QAC1I,CAAC;KAAA;IAEY,eAAe,CAAC,iBAA6C;;YACtE,MAAM,IAAI,CAAC,6BAA6B,CAAC,iBAAiB,CAAC,CAAC;YAC5D,IAAI,CAAC,2BAA2B,CAAC,iBAAiB,CAAC,CAAC;QACxD,CAAC;KAAA;IAEa,6BAA6B,CAAC,iBAA6C;;YACrF,MAAM,QAAQ,GAAa,QAAQ,CAAC,YAAY,CAAS,iBAAiB,CAAC,GAAG,CAAC,GAAG,CAAA,EAAE;gBAChF,aAAa,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;gBAC7B,OAAO,GAAG,CAAC,SAAS,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAA;YACxD,CAAC,CAAC,CAAC,CAAC;YACJ,8DAA8D;YAC9D,MAAM,eAAe,GAA6B,CAAC,MAAM,OAAO,CAAC,GAAG,CAA2B,QAAQ,CAAC,UAAU,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,qBAAqB,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;YACrM,eAAe,CAAC,OAAO,CAAC,EAAE,CAAA,EAAE;gBACxB,EAAE,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAC,YAAY,EAAC,QAAQ,EAAC,EAAE;oBACjD,IAAI,CAAC,uBAAuB,CAAC,GAAG,CAAC,QAAQ,EAAE,YAAY,CAAC,MAAM,CAAC,CAAC;oBAChE,YAAY,CAAC,OAAO,CAAC,UAAU,CAAA,EAAE;wBAC7B,IAAI,CAAC,iBAAiB,CAAC,GAAG,CAAC,UAAU,EAAC,QAAQ,CAAC,CAAC;oBACpD,CAAC,CAAC,CAAA;gBACN,CAAC,CAAC,CAAC;YACP,CAAC,CAAC,CAAC;QACP,CAAC;KAAA;IAEO,2BAA2B,CAAC,iBAA6C;QAC7E,MAAM,oBAAoB,GAA4B,IAAI,GAAG,EAAuB,CAAC;QACrF,iBAAiB,CAAC,OAAO,CAAC,EAAE,CAAA,EAAE;;YAC1B,IAAG,CAAC,EAAE,CAAC,SAAS;gBACZ,OAAO;YACX,MAAM,UAAU,GAAW,EAAE,CAAC,SAAS,CAAC;YACxC,IAAG,CAAC,oBAAoB,CAAC,GAAG,CAAC,UAAU,CAAC;gBACpC,oBAAoB,CAAC,GAAG,CAAC,UAAU,EAAE,IAAI,GAAG,EAAU,CAAC,CAAA;YAC3D,MAAA,EAAE,CAAC,QAAQ,0CAAE,OAAO,CAAC,OAAO,CAAA,EAAE;;gBAC1B,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,iBAAiB,0CAAE,OAAO,CAAC,EAAE,CAAA,EAAE;;oBACpC,IAAG,CAAA,EAAE,aAAF,EAAE,uBAAF,EAAE,CAAE,UAAU,MAAI,EAAE,aAAF,EAAE,uBAAF,EAAE,CAAE,UAAU,CAAA;wBAC/B,KAAI,IAAI,CAAC,GAAC,EAAE,CAAC,UAAU,EAAC,CAAC,IAAE,EAAE,CAAC,UAAU,EAAC,CAAC,EAAE,EAAC,CAAC;4BAC1C,MAAA,oBAAoB,CAAC,GAAG,CAAC,UAAU,CAAC,0CAAE,GAAG,CAAC,CAAC,CAAC,CAAC;wBACjD,CAAC;gBACT,CAAC,CAAC,CAAC;YACP,CAAC,CAAC,CAAC;QACP,CAAC,CAAC,CAAC;QACH,MAAM,kBAAkB,GAAmC,IAAI,GAAG,EAA8B,CAAC;QACjG,oBAAoB,CAAC,OAAO,CAAC,CAAC,KAAK,EAAC,UAAU,EAAC,EAAE;YAC7C,MAAM,QAAQ,GAAuB,IAAI,CAAC,iBAAiB,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;YAC5E,IAAG,CAAC,QAAQ;gBACR,OAAO;YACX,IAAG,CAAC,kBAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC;gBAChC,kBAAkB,CAAC,GAAG,CAAC,QAAQ,EAAE,IAAI,GAAG,EAAkB,CAAC,CAAC;YAEhE,KAAK,CAAC,OAAO,CAAC,CAAC,CAAA,EAAE;;gBACb,IAAG,MAAA,kBAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC,0CAAE,GAAG,CAAC,CAAC,CAAC,EAAC,CAAC;oBACzC,MAAM,CAAC,GAAG,MAAA,kBAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC,0CAAE,GAAG,CAAC,CAAC,CAAC,CAAC;oBACnD,IAAG,CAAC;wBACA,MAAA,kBAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC,0CAAE,GAAG,CAAC,CAAC,EAAC,CAAC,GAAC,CAAC,CAAC,CAAC;gBACrD,CAAC;qBAAI,CAAC;oBACF,MAAA,kBAAkB,CAAC,GAAG,CAAC,QAAQ,CAAC,0CAAE,GAAG,CAAC,CAAC,EAAC,CAAC,CAAC,CAAC;gBAC/C,CAAC;YACL,CAAC,CAAC,CAAC;QACP,CAAC,CAAC,CAAC;QACH,kBAAkB,CAAC,OAAO,CAAC,CAAC,aAAa,EAAC,QAAQ,EAAC,EAAE;YACjD,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,QAAQ,EAAE,KAAK,CAAC,IAAI,CAAC,aAAa,CAAC,OAAO,EAAE,CAAC,CAAC,MAAM,CAAC,CAAC,CAAA,EAAE,CAAA,CAAC,CAAC,CAAC,CAAC,CAAC,IAAE,IAAI,CAAC,uBAAuB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAA,EAAE,CAAA,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,CAAC,CAAC,CAAC,EAAC,CAAC,EAAC,EAAE,CAAA,CAAC,GAAC,CAAC,CAAC,CAAC,CAAC;QAC3K,CAAC,CAAC,CAAA;IACN,CAAC;IAEO,+BAA+B,CAAC,MAAsB,EAAE,gBAA2C;;QACvG,IAAG,CAAC,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,gBAAgB,CAAC,QAAQ,CAAC,IAAI,CAAA,MAAA,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,gBAAgB,CAAC,QAAQ,CAAC,0CAAE,MAAM,KAAI,CAAC;YAC7H,OAAO,IAAI,CAAC,qBAAqB,CAAC,+BAA+B,CAAC,MAAM,EAAE,gBAAgB,CAAC,CAAC;QAChG,MAAM,aAAa,GAAiB,IAAI,GAAG,CAAC,IAAI,CAAC,kBAAkB,CAAC,GAAG,CAAC,gBAAgB,CAAC,QAAQ,CAAC,CAAC,CAAC;QACpG,MAAM,KAAK,GAAW,MAAM,CAAC,YAAY,GAAC,MAAM,CAAC,WAAW,CAAC;QAC7D,OAAO,KAAK,CAAC,MAAM,CAAC,WAAW,EAAE,MAAM,CAAC,SAAS,GAAC,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,EAAC,EAAE;YAC1D,aAAa,CAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC;YACnC,OAAO,IAAI,CAAC,qBAAqB,CAAC,eAAe,CAAC;gBAC9C,KAAK,EAAE,CAAC;gBACR,QAAQ,EAAE,CAAC,GAAC,KAAK;gBACjB,QAAQ,EAAE,gBAAgB,CAAC,QAAQ;gBACnC,MAAM,EAAE,UAAU,CAAC,yBAAyB,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC;gBAC3F,cAAc,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC,IAAI;gBAC5G,eAAe,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC,KAAK;gBAC9G,IAAI,EAAE,eAAe;gBACrB,KAAK,EAAE,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,kBAAkB,CAAC,CAAC,CAAC,gBAAgB;gBACnE,KAAK,EAAE,aAAa,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA,CAAC,CAAC,GAAG;aACvC,EAAE,gBAAgB,CAAC,CAAA;QACxB,CAAC,CAAC,CAAC;IAEP,CAAC;CAEJ"}
|
|
@@ -1,16 +1,16 @@
|
|
|
1
1
|
import { RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro/lib/RcsbDataManager/RcsbDataManager";
|
|
2
2
|
import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
3
|
-
import {
|
|
3
|
+
import { AlignedRegions, SequenceAnnotations, TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
4
4
|
import { AlignmentContextInterface, PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
5
5
|
import { TrackFactoryInterface } from "../TrackFactoryInterface";
|
|
6
6
|
import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
|
|
7
|
-
export declare class PositionalScoreAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType,
|
|
7
|
+
export declare class PositionalScoreAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
|
|
8
8
|
private alignmentTrackFactory;
|
|
9
9
|
private positionalScores;
|
|
10
10
|
private readonly instanceEntityMap;
|
|
11
11
|
constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
|
|
12
|
-
getTrack(alignmentRequestContext: AlignmentRequestContextType, targetAlignment:
|
|
13
|
-
prepareFeatures(positionalScores: Array<
|
|
12
|
+
getTrack(alignmentRequestContext: AlignmentRequestContextType, targetAlignment: TargetAlignments, alignedRegionToTrackElementList?: (region: AlignedRegions, alignmentContext: AlignmentContextInterface) => Array<RcsbFvTrackDataElementInterface>): Promise<RcsbFvRowConfigInterface>;
|
|
13
|
+
prepareFeatures(positionalScores: Array<SequenceAnnotations>): Promise<void>;
|
|
14
14
|
private collectFeatureEntryProperties;
|
|
15
15
|
private prepareFeaturesAlignmentMap;
|
|
16
16
|
private alignedRegionToTrackElementList;
|
|
@@ -1,5 +1,5 @@
|
|
|
1
1
|
import { __awaiter } from "tslib";
|
|
2
|
-
import {
|
|
2
|
+
import { FeaturesType } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
3
3
|
import { Operator } from "../../../../RcsbUtils/Helpers/Operator";
|
|
4
4
|
import { range } from "lodash";
|
|
5
5
|
import { PlainAlignmentTrackFactory } from "./PlainAlignmentTrackFactory";
|
|
@@ -105,10 +105,11 @@ export class PositionalScoreAlignmentTrackFactory {
|
|
|
105
105
|
source: TrackUtils.transformSourceFromTarget(alignmentContext.targetId, alignmentContext.to),
|
|
106
106
|
provenanceName: TrackUtils.getProvenanceConfigFormTarget(alignmentContext.targetId, alignmentContext.to).name,
|
|
107
107
|
provenanceColor: TrackUtils.getProvenanceConfigFormTarget(alignmentContext.targetId, alignmentContext.to).color,
|
|
108
|
-
type:
|
|
108
|
+
type: FeaturesType.MaQaMetricLocalTypeOther,
|
|
109
109
|
}, alignmentContext));
|
|
110
110
|
});
|
|
111
111
|
}
|
|
112
112
|
return outRegions;
|
|
113
113
|
}
|
|
114
114
|
}
|
|
115
|
+
//# sourceMappingURL=PositionalScoreAlignmentTrackFactory.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"PositionalScoreAlignmentTrackFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.ts"],"names":[],"mappings":";AAGA,OAAO,EAIH,YAAY,EACf,MAAM,+DAA+D,CAAC;AAQvE,OAAO,EAAC,QAAQ,EAAC,MAAM,wCAAwC,CAAC;AAChE,OAAO,EAAC,KAAK,EAAC,MAAM,QAAQ,CAAC;AAE7B,OAAO,EAAC,0BAA0B,EAAC,MAAM,8BAA8B,CAAC;AACxE,OAAO,EAAC,UAAU,EAAC,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAC,qBAAqB,EAAC,MAAM,mDAAmD,CAAC;AAExF,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AACpE,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAG/E,MAAM,OAAO,oCAAoC;IAO7C,YAAY,wBAAyD;QAJ7D,qBAAgB,GAAmC,IAAI,GAAG,EAA8B,CAAC;QAEhF,sBAAiB,GAAuB,IAAI,GAAG,EAAkB,CAAC;QAG/E,IAAI,CAAC,qBAAqB,GAAG,IAAI,0BAA0B,CAAC,wBAAwB,CAAC,CAAC;IAC1F,CAAC;IAEY,QAAQ,CACjB,uBAAoD,EACpD,eAAiC,EACjC,+BAA8I;;YAE9I,OAAO,IAAI,CAAC,qBAAqB,CAAC,QAAQ,CACtC,uBAAuB,EACvB,eAAe,EACf,IAAI,CAAC,+BAA+B,CAAC,IAAI,CAAC,IAAI,CAAC,EAC/C;gBACI,MAAM,EAAE,CAAC,SAAS,EAAC,SAAS,EAAC,SAAS,EAAC,SAAS,CAAC;gBACjD,UAAU,EAAE,CAAC,EAAE,EAAC,EAAE,EAAC,EAAE,CAAC;aACzB,CACJ,CAAC;QAEN,CAAC;KAAA;IAEY,eAAe,CAAC,gBAA4C;;YACrE,MAAM,IAAI,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,CAAC;YAC3D,IAAI,CAAC,2BAA2B,CAAC,gBAAgB,CAAC,CAAC;QACvD,CAAC;KAAA;IAEa,6BAA6B,CAAC,iBAA6C;;YACrF,MAAM,QAAQ,GAAa,QAAQ,CAAC,YAAY,CAAS,iBAAiB,CAAC,GAAG,CAAC,GAAG,CAAA,EAAE;gBAChF,aAAa,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;gBAC7B,OAAO,GAAG,CAAC,SAAS,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC;YACzD,CAAC,CAAC,CAAC,CAAC;YACJ,8DAA8D;YAC9D,MAAM,eAAe,GAA6B,CAAC,MAAM,OAAO,CAAC,GAAG,CAA2B,QAAQ,CAAC,UAAU,CAAC,QAAQ,EAAE,GAAG,CAAC,CAAC,GAAG,CAAC,GAAG,CAAC,EAAE,CAAC,qBAAqB,CAAC,kBAAkB,CAAC,GAAG,CAAC,CAAC,CAAC,CAAC,CAAC,IAAI,EAAE,CAAC;YACrM,eAAe,CAAC,OAAO,CAAC,EAAE,CAAA,EAAE;gBACxB,EAAE,CAAC,gBAAgB,CAAC,OAAO,CAAC,CAAC,YAAY,EAAC,QAAQ,EAAC,EAAE;oBACjD,YAAY,CAAC,OAAO,CAAC,UAAU,CAAA,EAAE;wBAC7B,IAAI,CAAC,iBAAiB,CAAC,GAAG,CAAC,UAAU,EAAC,QAAQ,CAAC,CAAC;oBACpD,CAAC,CAAC,CAAA;gBACN,CAAC,CAAC,CAAC;YACP,CAAC,CAAC,CAAC;QACP,CAAC;KAAA;IAEO,2BAA2B,CAAC,gBAA4C;QAC5E,MAAM,wBAAwB,GAAmC,IAAI,GAAG,EAA8B,CAAC;QACvG,gBAAgB,CAAC,OAAO,CAAC,EAAE,CAAA,EAAE;;YACzB,IAAG,CAAC,EAAE,CAAC,SAAS;gBACZ,OAAO;YACX,MAAM,UAAU,GAAW,EAAE,CAAC,SAAS,CAAC;YACxC,IAAG,CAAC,wBAAwB,CAAC,GAAG,CAAC,UAAU,CAAC;gBACxC,wBAAwB,CAAC,GAAG,CAAC,UAAU,EAAE,IAAI,GAAG,EAAiB,CAAC,CAAA;YACtE,MAAA,EAAE,CAAC,QAAQ,0CAAE,OAAO,CAAC,OAAO,CAAA,EAAE;;gBAC1B,MAAA,OAAO,aAAP,OAAO,uBAAP,OAAO,CAAE,iBAAiB,0CAAE,OAAO,CAAC,EAAE,CAAA,EAAE;;oBACpC,MAAA,EAAE,aAAF,EAAE,uBAAF,EAAE,CAAE,MAAM,0CAAE,OAAO,CAAC,CAAC,CAAC,EAAC,CAAC,EAAC,EAAE;;wBACvB,IAAG,EAAE,CAAC,UAAU,IAAI,CAAC;4BACjB,MAAA,wBAAwB,CAAC,GAAG,CAAC,UAAU,CAAC,0CAAE,GAAG,CAAC,EAAE,CAAC,UAAU,GAAC,CAAC,EAAC,CAAC,CAAC,CAAC;oBACzE,CAAC,CAAC,CAAC;gBACP,CAAC,CAAC,CAAC;YACP,CAAC,CAAC,CAAC;QACP,CAAC,CAAC,CAAC;QACH,MAAM,qBAAqB,GAAmC,IAAI,GAAG,EAA8B,CAAC;QACpG,wBAAwB,CAAC,OAAO,CAAC,CAAC,GAAG,EAAC,UAAU,EAAC,EAAE;YAC/C,MAAM,QAAQ,GAAuB,IAAI,CAAC,iBAAiB,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;YAC5E,IAAG,CAAC,QAAQ;gBACR,OAAM;YACV,IAAG,CAAC,qBAAqB,CAAC,GAAG,CAAC,QAAQ,CAAC;gBACnC,qBAAqB,CAAC,GAAG,CAAC,QAAQ,EAAE,IAAI,GAAG,EAAkB,CAAC,CAAC;YACnE,MAAM,CAAC,GAAG,qBAAqB,CAAC,GAAG,CAAC,QAAQ,CAAC,CAAC;YAC9C,aAAa,CAAC,CAAC,CAAC,CAAC;YACjB,GAAG,CAAC,OAAO,CAAC,CAAC,KAAK,EAAC,QAAQ,EAAC,EAAE;;gBAC1B,IAAG,CAAC,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,EAAC,CAAC;oBACjB,CAAC,CAAC,GAAG,CAAC,QAAQ,EAAC,KAAK,CAAC,CAAC;gBAC1B,CAAC;qBAAK,IAAG,KAAK,GAAG,CAAC,MAAA,CAAC,CAAC,GAAG,CAAC,QAAQ,CAAC,mCAAI,MAAM,CAAC,gBAAgB,CAAC,EAAE,CAAC;oBAC5D,CAAC,CAAC,GAAG,CAAC,QAAQ,EAAC,KAAK,CAAC,CAAC;gBAC1B,CAAC;YACL,CAAC,CAAC,CAAC;QACP,CAAC,CAAC,CAAC;QACH,IAAI,CAAC,gBAAgB,GAAG,qBAAqB,CAAC;IAClD,CAAC;IAEO,+BAA+B,CAAC,MAAsB,EAAE,gBAA2C;;QACvG,IAAG,CAAC,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,gBAAgB,CAAC,QAAQ,CAAC,IAAI,CAAA,MAAA,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,gBAAgB,CAAC,QAAQ,CAAC,0CAAE,IAAI,KAAI,CAAC;YACvH,OAAO,IAAI,CAAC,qBAAqB,CAAC,+BAA+B,CAAC,MAAM,EAAE,gBAAgB,CAAC,CAAC;QAChG,MAAM,UAAU,GAA8C,EAAE,CAAC;QACjE,MAAM,sBAAsB,GAAoC,IAAI,CAAC,gBAAgB,CAAC,GAAG,CAAC,gBAAgB,CAAC,QAAQ,CAAC,CAAC;QACrH,IAAG,sBAAsB,IAAI,sBAAsB,CAAC,IAAI,GAAC,CAAC,EAAE,CAAC;YACzD,KAAK,CAAC,MAAM,CAAC,WAAW,EAAC,MAAM,CAAC,SAAS,GAAC,CAAC,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAC,CAAC,EAAC,EAAE;gBACxD,IAAG,CAAC,gBAAgB,CAAC,EAAE;oBACnB,OAAO;gBACX,UAAU,CAAC,IAAI,CAAC,IAAI,CAAC,qBAAqB,CAAC,eAAe,CAAC;oBACvD,KAAK,EAAE,CAAC;oBACR,QAAQ,EAAE,MAAM,CAAC,YAAY,GAAC,CAAC;oBAC/B,KAAK,EAAE,sBAAsB,CAAC,GAAG,CAAC,CAAC,CAAC;oBACpC,QAAQ,EAAE,gBAAgB,CAAC,QAAQ;oBACnC,MAAM,EAAE,UAAU,CAAC,yBAAyB,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC;oBAC3F,cAAc,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC,IAAI;oBAC5G,eAAe,EAAE,UAAU,CAAC,6BAA6B,CAAC,gBAAgB,CAAC,QAAQ,EAAC,gBAAgB,CAAC,EAAE,CAAC,CAAC,KAAK;oBAC9G,IAAI,EAAE,YAAY,CAAC,wBAAwB;iBAC9C,EAAE,gBAAgB,CAAC,CAAC,CAAA;YACzB,CAAC,CAAC,CAAC;QACP,CAAC;QACD,OAAO,UAAU,CAAC;IACtB,CAAC;CAEJ"}
|
package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js
CHANGED
|
@@ -12,8 +12,8 @@ export class SequenceTrackFactory {
|
|
|
12
12
|
this.trackTitleFactory = trackTitleFactory !== null && trackTitleFactory !== void 0 ? trackTitleFactory : new SequenceTrackTitleFactory(entityInstanceTranslator);
|
|
13
13
|
}
|
|
14
14
|
getTrack(alignmentQueryContext, querySequence) {
|
|
15
|
-
var _a, _b;
|
|
16
15
|
return __awaiter(this, void 0, void 0, function* () {
|
|
16
|
+
var _a, _b;
|
|
17
17
|
const queryId = (_a = alignmentQueryContext.queryId) !== null && _a !== void 0 ? _a : alignmentQueryContext.groupId;
|
|
18
18
|
assertDefined(queryId);
|
|
19
19
|
return {
|
|
@@ -75,3 +75,4 @@ export class SequenceTrackFactory {
|
|
|
75
75
|
return o;
|
|
76
76
|
}
|
|
77
77
|
}
|
|
78
|
+
//# sourceMappingURL=SequenceTrackFactory.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"SequenceTrackFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.ts"],"names":[],"mappings":";AAGA,OAAO,EAAC,iBAAiB,EAAC,MAAM,+DAA+D,CAAC;AAQhG,OAAO,EAAC,yBAAyB,EAAC,MAAM,oDAAoD,CAAC;AAC7F,OAAO,EAAC,UAAU,EAAC,MAAM,qBAAqB,CAAC;AAC/C,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AACpE,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAS/E,MAAM,OAAO,oBAAoB;IAK7B,YAAY,wBAAyD,EAAE,iBAA6E;QAHnI,6BAAwB,GAA+C,SAAS,CAAC;QAI9F,IAAI,CAAC,wBAAwB,GAAG,wBAAwB,CAAC;QACzD,IAAI,CAAC,iBAAiB,GAAG,iBAAiB,aAAjB,iBAAiB,cAAjB,iBAAiB,GAAI,IAAI,yBAAyB,CAAC,wBAAwB,CAAC,CAAC;IAC1G,CAAC;IAEY,QAAQ,CAAC,qBAAkD,EAAE,aAAqB;;;YAC3F,MAAM,OAAO,GAAG,MAAA,qBAAqB,CAAC,OAAO,mCAAI,qBAAqB,CAAC,OAAO,CAAC;YAC/E,aAAa,CAAC,OAAO,CAAC,CAAC;YACvB,OAAO;gBACH,OAAO,EAAE,MAAA,oBAAoB,GAAG,qBAAqB,CAAC,OAAO,mCAAI,qBAAqB,CAAC,OAAO;gBAC9F,WAAW,8CAA6B;gBACxC,UAAU,EAAE,SAAS;gBACrB,YAAY,EAAE,SAAS;gBACvB,QAAQ,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,aAAa,CAAC,qBAAqB,CAAC;gBAC3E,SAAS,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,mBAAmB,CAAC,qBAAqB,CAAC;gBAClF,cAAc,EAAE,MAAM,IAAI,CAAC,iBAAiB,CAAC,sBAAsB,CAAC,qBAAqB,CAAC;gBAC1F,eAAe,EAAE,IAAI;gBACrB,OAAO,EAAE,IAAI;gBACb,SAAS,EAAE,IAAI,CAAC,iBAAiB,CAAC;oBAC9B,QAAQ,EAAE,aAAa;oBACvB,KAAK,EAAE,CAAC;oBACR,QAAQ,EAAE,SAAS;oBACnB,OAAO;oBACP,QAAQ,EAAE,EAAE;oBACZ,IAAI,EAAE,qBAAqB,CAAC,IAAI;oBAChC,EAAE,EAAE,SAAS;iBAChB,EAAE,MAAM,CAAC;aACb,CAAC;QACN,CAAC;KAAA;IAEM,iBAAiB,CAAC,MAAkC,EAAE,MAAkB;QAC3E,MAAM,YAAY,GAA2C,IAAI,KAAK,EAAmC,CAAC;QAC1G,MAAM,EAAE,GAAW,MAAM,KAAK,MAAM,CAAC,CAAC,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,CAAC,MAAM,CAAC,QAAQ,CAAC;QACxE,MAAM,CAAC,QAAQ,CAAC,KAAK,CAAC,EAAE,CAAC,CAAC,OAAO,CAAC,CAAC,CAAC,EAAE,CAAC,EAAE,EAAE;YACvC,MAAM,CAAC,GAAG,MAAM,CAAC,MAAM,CAAC,CAAA;YACxB,IAAG,CAAC,CAAC;gBACD,OAAO;YACX,MAAM,CAAC,GAAuC;gBAC1C,KAAK,EAAE,CAAC,MAAM,CAAC,KAAK,GAAG,CAAC,CAAC;gBACzB,QAAQ,EAAE,OAAO,MAAM,CAAC,QAAQ,KAAK,QAAQ,CAAC,CAAC,CAAC,MAAM,CAAC,QAAQ,GAAG,CAAC,CAAC,CAAC,CAAC,SAAS;gBAC/E,QAAQ,EAAE,EAAE;gBACZ,MAAM,EAAE,UAAU,CAAC,yBAAyB,CAAC,EAAE,EAAE,CAAC,CAAC;gBACnD,cAAc,EAAE,UAAU,CAAC,6BAA6B,CAAC,EAAE,EAAC,CAAC,CAAC,CAAC,IAAI;gBACnE,eAAe,EAAE,UAAU,CAAC,6BAA6B,CAAC,EAAE,EAAC,CAAC,CAAC,CAAC,KAAK;gBACrE,KAAK,EAAE,CAAC;gBACR,IAAI,EAAE,OAAO,CAAC,EAAE;aACnB,CAAC;YACF,YAAY,CAAC,IAAI,CAAC,IAAI,CAAC,eAAe,CAAC,CAAC,EAAE;gBACtC,IAAI,EAAC,MAAM,CAAC,IAAI;gBAChB,EAAE,EAAC,MAAM,CAAC,EAAE;gBACZ,OAAO,EAAC,MAAM,CAAC,OAAO;gBACtB,QAAQ,EAAC,MAAM,CAAC,QAAQ;aAC3B,CAAC,CAAC,CAAC;QACR,CAAC,CAAC,CAAC;QACH,OAAO,YAAY,CAAC;IACxB,CAAC;IAED,6CAA6C;IACtC,eAAe,CAAC,CAAoC,EAAE,gBAA0C;QACnG,IAAI,CAAC,GAAsC,CAAC,CAAC;QAC7C,IAAG,IAAI,CAAC,wBAAwB,IAAE,IAAI,EAAC,CAAC;YACpC,IAAI,CAAC,wBAAwB,CAAC,eAAe,CAAC,CAAC,EAAC,gBAAgB,CAAC,CAAC;QACtE,CAAC;QACD,IAAG,gBAAgB,CAAC,EAAE,IAAI,iBAAiB,CAAC,WAAW,IAAI,CAAC,CAAC,QAAQ,IAAI,IAAI,IAAI,IAAI,CAAC,wBAAwB,IAAE,IAAI;YAChH,CAAC,CAAC,QAAQ,GAAG,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,GAAG,YAAY,CAAC,QAAQ,GAAG,IAAI,CAAC,wBAAwB,CAAC,mBAAmB,CAAC,CAAC,CAAC,QAAQ,CAAC,KAAK,CAAC,YAAY,CAAC,QAAQ,CAAC,CAAC,CAAC,CAAC,CAAC,CAAA;QACnL,OAAO,CAAC,CAAC;IACb,CAAC;CAEJ"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"TrackFactoryInterface.js","sourceRoot":"","sources":["../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryInterface.ts"],"names":[],"mappings":""}
|
|
@@ -1,13 +1,13 @@
|
|
|
1
1
|
import { RcsbFvLink } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
2
2
|
import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
|
|
3
|
-
import {
|
|
3
|
+
import { TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
4
4
|
import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
|
|
5
5
|
import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
6
|
-
export declare class AlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType,
|
|
6
|
+
export declare class AlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
|
|
7
7
|
private readonly experimentalTrackTitleFactory;
|
|
8
8
|
private readonly modelTrackTitleFactory;
|
|
9
9
|
constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
|
|
10
|
-
getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment:
|
|
11
|
-
getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment:
|
|
12
|
-
getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment:
|
|
10
|
+
getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string | RcsbFvLink>;
|
|
11
|
+
getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
|
|
12
|
+
getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
|
|
13
13
|
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"AlignmentTrackTitleFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.ts"],"names":[],"mappings":";AAKA,OAAO,EAAC,sCAAsC,EAAC,MAAM,0CAA0C,CAAC;AAChG,OAAO,EAAC,+BAA+B,EAAC,MAAM,mCAAmC,CAAC;AAClF,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAE/E,MAAM,OAAO,0BAA0B;IAKnC,YAAY,wBAAyD;QACjE,IAAI,CAAC,6BAA6B,GAAG,IAAI,sCAAsC,CAAC,wBAAwB,CAAC,CAAC;QAC1G,IAAI,CAAC,sBAAsB,GAAG,IAAI,+BAA+B,CAAC,wBAAwB,CAAC,CAAC;IAChG,CAAC;IAEY,aAAa,CAAC,qBAAkD,EAAE,eAAiC;;YAC5G,IAAG,eAAe,CAAC,SAAS,IAAI,YAAY,CAAC,OAAO,CAAC,eAAe,CAAC,SAAS,CAAC;gBAC/E,OAAO,IAAI,CAAC,sBAAsB,CAAC,aAAa,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;;gBAEzF,OAAO,IAAI,CAAC,6BAA6B,CAAC,aAAa,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;QACpG,CAAC;KAAA;IAEY,mBAAmB,CAAC,qBAAkD,EAAE,eAAiC;;YAClH,IAAG,eAAe,CAAC,SAAS,IAAI,YAAY,CAAC,OAAO,CAAC,eAAe,CAAC,SAAS,CAAC;gBAC3E,OAAO,IAAI,CAAC,sBAAsB,CAAC,mBAAmB,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;;gBAE/F,OAAO,IAAI,CAAC,6BAA6B,CAAC,mBAAmB,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;QAC9G,CAAC;KAAA;IAEY,sBAAsB,CAAC,qBAAkD,EAAE,eAAiC;;YACrH,IAAG,eAAe,CAAC,SAAS,IAAI,YAAY,CAAC,OAAO,CAAC,eAAe,CAAC,SAAS,CAAC;gBAC3E,OAAO,IAAI,CAAC,sBAAsB,CAAC,sBAAsB,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;;gBAElG,OAAO,IAAI,CAAC,6BAA6B,CAAC,sBAAsB,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;QACjH,CAAC;KAAA;CAEJ"}
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@@ -9,8 +9,8 @@ export class AnnotationsTrackTitleFactory {
|
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9
|
});
|
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10
10
|
}
|
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11
11
|
getTrackTitleFlagColor(trackManager) {
|
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-
var _a, _b;
|
|
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|
return __awaiter(this, void 0, void 0, function* () {
|
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+
var _a, _b;
|
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14
|
const provenance = Array.from((_b = (_a = trackManager.getConfig()) === null || _a === void 0 ? void 0 : _a.provenanceList) !== null && _b !== void 0 ? _b : []);
|
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15
15
|
if (provenance.length == 1
|
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&&
|
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@@ -23,8 +23,8 @@ export class AnnotationsTrackTitleFactory {
|
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|
});
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|
getTrackTitlePrefix(trackManager) {
|
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return __awaiter(this, void 0, void 0, function* () {
|
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|
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|
return (_b = (_a = trackManager.getConfig()) === null || _a === void 0 ? void 0 : _a.prefix) !== null && _b !== void 0 ? _b : "";
|
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@@ -32,3 +32,4 @@ export class AnnotationsTrackTitleFactory {
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function buildRowTitle(annConfig) {
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return annConfig.prefix ? FeatureTools.parseLink(annConfig.title) : annConfig.title;
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//# sourceMappingURL=AnnotationsTrackTitleFactory.js.map
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@@ -0,0 +1 @@
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1
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+
{"version":3,"file":"AnnotationsTrackTitleFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.ts"],"names":[],"mappings":";AAIA,OAAO,EAAC,uBAAuB,EAAC,MAAM,0DAA0D,CAAC;AACjG,OAAO,EAAC,YAAY,EAAC,MAAM,wDAAwD,CAAC;AAEpF,MAAM,OAAO,4BAA4B;IAE/B,aAAa,CAAC,YAAmC;;YACnD,MAAM,CAAC,GAAG,YAAY,CAAC,SAAS,EAAE,CAAC;YACnC,OAAO,CAAC,CAAC,CAAC,CAAC,aAAa,CAAC,CAAC,CAAC,CAAC,CAAC,CAAC,YAAY,CAAC,KAAK,EAAE,CAAC;QACvD,CAAC;KAAA;IAEK,sBAAsB,CAAC,YAAmC;;;YAC5D,MAAM,UAAU,GAAa,KAAK,CAAC,IAAI,CAAC,MAAA,MAAA,YAAY,CAAC,SAAS,EAAE,0CAAE,cAAc,mCAAI,EAAE,CAAC,CAAC;YACxF,IACI,UAAU,CAAC,MAAM,IAAI,CAAC;;oBAEtB,CAAC,UAAU,CAAC,CAAC,CAAC,KAAK,uBAAuB,CAAC,cAAc,CAAC,GAAG,IAAI,UAAU,CAAC,CAAC,CAAC,KAAK,uBAAuB,CAAC,cAAc,CAAC,QAAQ,CAAC,EACtI,CAAC;gBACE,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,OAAO,CAAC;YAC/D,CAAC;iBAAI,CAAC;gBACF,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ,CAAC;YAChE,CAAC;QACL,CAAC;KAAA;IAEK,mBAAmB,CAAC,YAAmC;;;YACzD,OAAO,MAAA,MAAA,YAAY,CAAC,SAAS,EAAE,0CAAE,MAAM,mCAAI,EAAE,CAAC;QAClD,CAAC;KAAA;CAEJ;AAED,SAAS,aAAa,CAAC,SAAwC;IAC3D,OAAO,SAAS,CAAC,MAAM,CAAC,CAAC,CAAC,YAAY,CAAC,SAAS,CAAC,SAAS,CAAC,KAAK,CAAC,CAAC,CAAC,CAAC,SAAS,CAAC,KAAK,CAAA;AACvF,CAAC"}
|
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@@ -1,13 +1,13 @@
|
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1
1
|
import { RcsbFvLink } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
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2
2
|
import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
|
|
3
|
-
import {
|
|
3
|
+
import { TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
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4
4
|
import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
|
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5
5
|
import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
6
|
-
export declare class ExperimentalAlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType,
|
|
6
|
+
export declare class ExperimentalAlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
|
|
7
7
|
private readonly entityInstanceTranslator;
|
|
8
8
|
constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
|
|
9
|
-
getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment:
|
|
10
|
-
getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment:
|
|
11
|
-
getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment:
|
|
9
|
+
getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string | RcsbFvLink>;
|
|
10
|
+
getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
|
|
11
|
+
getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
|
|
12
12
|
private buildInstanceId;
|
|
13
13
|
}
|
|
@@ -75,3 +75,4 @@ export class ExperimentalAlignmentTrackTitleFactory {
|
|
|
75
75
|
return TagDelimiter.parseInstance(targetId).entryId + TagDelimiter.instance + (labelAsymId === authAsymId || !authAsymId ? labelAsymId : labelAsymId + "[auth " + authAsymId + "]");
|
|
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|
}
|
|
77
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|
}
|
|
78
|
+
//# sourceMappingURL=ExperimentalAlignmentTrackTitleFactory.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"ExperimentalAlignmentTrackTitleFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.ts"],"names":[],"mappings":";AAEA,OAAO,EAAC,iBAAiB,EAAmB,MAAM,+DAA+D,CAAC;AAElH,OAAO,QAAQ,MAAM,iDAAiD,CAAC;AACvE,OAAO,EAAC,uBAAuB,EAAC,MAAM,0DAA0D,CAAC;AAEjG,OAAO,EAAC,UAAU,EAAC,MAAM,0CAA0C,CAAC;AACpE,IAAO,aAAa,GAAG,UAAU,CAAC,aAAa,CAAC;AAChD,OAAO,EAAC,YAAY,EAAC,MAAM,mDAAmD,CAAC;AAE/E,MAAM,OAAO,sCAAsC;IAI/C,YAAY,wBAAyD;QAFpD,6BAAwB,GAA+C,SAAS,CAAC;QAG9F,IAAI,CAAC,wBAAwB,GAAG,wBAAwB,CAAC;IAC7D,CAAC;IAEY,aAAa,CAAC,qBAAkD,EAAE,eAAiC;;YAC5G,IAAI,QAA6B,CAAC;YAClC,aAAa,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC;YACzC,IAAG,qBAAqB,CAAC,qBAAqB,EAAC,CAAC;gBAC5C,QAAQ,GAAG,eAAe,CAAC,SAAS,CAAC;YACzC,CAAC;iBAAM,IAAI,qBAAqB,CAAC,EAAE,KAAK,iBAAiB,CAAC,WAAW,IAAI,IAAI,CAAC,wBAAwB,IAAI,IAAI,EAAE,CAAC;gBAC7G,MAAM,QAAQ,GAAuB,IAAI,CAAC,wBAAwB,CAAC,qBAAqB,CAAC,YAAY,CAAC,aAAa,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC,UAAU,CAAC,CAAC;gBAC3J,aAAa,CAAC,QAAQ,CAAC,CAAC;gBACxB,QAAQ,GAAG;oBACP,UAAU,EAAC,IAAI,CAAC,eAAe,CAAC,eAAe,CAAC,SAAS,CAAC;oBAC1D,GAAG,EAAE,QAAgB,CAAC,UAAU,CAAC,GAAG,GAAC,YAAY,CAAC,aAAa,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC,OAAO,GAAC,UAAU,GAAC,QAAQ;oBACtH,KAAK,EAAE;wBACH,UAAU,EAAC,MAAM;wBACjB,KAAK,EAAC,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ;qBAC7D;iBACJ,CAAC;YACN,CAAC;iBAAM,IAAI,qBAAqB,CAAC,EAAE,KAAK,iBAAiB,CAAC,SAAS,EAAE,CAAC;gBAClE,MAAM,QAAQ,GAAW,YAAY,CAAC,WAAW,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC,QAAQ,CAAC;gBACtF,QAAQ,GAAG;oBACP,UAAU,EAAC,eAAe,CAAC,SAAS;oBACpC,GAAG,EAAE,QAAgB,CAAC,UAAU,CAAC,GAAG,GAAC,YAAY,CAAC,WAAW,CAAC,eAAe,CAAC,SAAS,CAAC,CAAC,OAAO,GAAC,UAAU,GAAC,QAAQ;oBACpH,KAAK,EAAE;wBACH,UAAU,EAAC,MAAM;wBACjB,KAAK,EAAC,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ;qBAC7D;iBACJ,CAAC;YACN,CAAC;iBAAM,IAAI,qBAAqB,CAAC,EAAE,KAAK,iBAAiB,CAAC,OAAO,EAAE,CAAC;gBAChE,QAAQ,GAAG;oBACP,UAAU,EAAE,eAAe,CAAC,SAAS;oBACrC,GAAG,EAAG,QAAgB,CAAC,YAAY,CAAC,GAAG,GAAC,eAAe,CAAC,SAAS;oBACjE,KAAK,EAAE;wBACH,UAAU,EAAC,MAAM;wBACjB,KAAK,EAAC,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ;qBAC7D;iBACJ,CAAC;YACN,CAAC;iBAAM,CAAC;gBACJ,QAAQ,GAAG,eAAe,CAAC,SAAS,CAAC;YACzC,CAAC;YACD,OAAO,QAAQ,CAAC;QACpB,CAAC;KAAA;IAEY,mBAAmB,CAAC,qBAAkD,EAAE,eAAiC;;YAClH,OAAO,qBAAqB,CAAC,EAAE,IAAI,CAAC,qBAAqB,CAAC,EAAE,CAAC,QAAQ,CAAC,KAAK,CAAC,CAAA,CAAC,CAAC,qBAAqB,CAAC,EAAE,CAAC,OAAO,CAAC,GAAG,EAAE,GAAG,CAAC,GAAG,GAAG,GAAG,YAAY,CAAC,cAAc,CAAC,CAAC,CAAC,EAAE,CAAC;QACtK,CAAC;KAAA;IAEY,sBAAsB,CAAC,qBAAkD,EAAE,eAAiC;;YACrH,IAAG,qBAAqB,CAAC,EAAE,KAAK,iBAAiB,CAAC,OAAO;gBACrD,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ,CAAC;YAChE,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,OAAO,CAAC;QAC/D,CAAC;KAAA;IAEO,eAAe,CAAC,QAAgB;;QACpC,MAAM,WAAW,GAAW,YAAY,CAAC,aAAa,CAAC,QAAQ,CAAC,CAAC,UAAU,CAAC;QAC5E,MAAM,UAAU,GAAwB,MAAA,IAAI,CAAC,wBAAwB,0CAAE,mBAAmB,CAAC,WAAW,CAAC,CAAC;QACxG,OAAO,YAAY,CAAC,aAAa,CAAC,QAAQ,CAAC,CAAC,OAAO,GAAC,YAAY,CAAC,QAAQ,GAAC,CAAC,WAAW,KAAK,UAAU,IAAI,CAAC,UAAU,CAAA,CAAC,CAAC,WAAW,CAAC,CAAC,CAAC,WAAW,GAAC,QAAQ,GAAC,UAAU,GAAC,GAAG,CAAC,CAAC;IAC7K,CAAC;CAEJ"}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"InstanceSequenceTrackTitleFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/InstanceSequenceTrackTitleFactory.ts"],"names":[],"mappings":";AAKA,OAAO,EAAC,yBAAyB,EAAC,MAAM,6BAA6B,CAAC;AAEtE,MAAM,OAAO,iCAAiC;IAI1C,YAAY,wBAAyD;QACjE,IAAI,CAAC,iBAAiB,GAAG,IAAI,yBAAyB,CAAC,wBAAwB,CAAC,CAAC;IACrF,CAAC;IAEY,aAAa,CAAC,qBAAkD;;YACzE,OAAO,IAAI,CAAC,iBAAiB,CAAC,aAAa,CAAC,qBAAqB,CAAC,CAAC;QACvE,CAAC;KAAA;IAEY,mBAAmB,CAAC,qBAAkD;;YAC/E,OAAO,OAAO,CAAC;QACnB,CAAC;KAAA;IAEY,sBAAsB,CAAC,qBAAkD;;YAClF,OAAO,IAAI,CAAC,iBAAiB,CAAC,sBAAsB,CAAC,qBAAqB,CAAC,CAAC;QAChF,CAAC;KAAA;CAEJ"}
|
|
@@ -1,12 +1,12 @@
|
|
|
1
1
|
import { RcsbFvLink } from "@rcsb/rcsb-saguaro/lib/RcsbFv/RcsbFvConfig/RcsbFvConfigInterface";
|
|
2
2
|
import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
|
|
3
3
|
import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
|
|
4
|
-
import {
|
|
4
|
+
import { TargetAlignments } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
|
|
5
5
|
import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
|
|
6
|
-
export declare class ModelAlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType,
|
|
6
|
+
export declare class ModelAlignmentTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignments]> {
|
|
7
7
|
private readonly alignmentTrackTitleFactory;
|
|
8
8
|
constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
|
|
9
|
-
getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment:
|
|
10
|
-
getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment:
|
|
11
|
-
getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment:
|
|
9
|
+
getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string | RcsbFvLink>;
|
|
10
|
+
getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
|
|
11
|
+
getTrackTitleFlagColor(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignments): Promise<string>;
|
|
12
12
|
}
|
|
@@ -0,0 +1 @@
|
|
|
1
|
+
{"version":3,"file":"ModelAlignmentTrackTitleFactory.js","sourceRoot":"","sources":["../../../../../src/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.ts"],"names":[],"mappings":";AAKA,OAAO,EAAC,uBAAuB,EAAC,MAAM,0DAA0D,CAAC;AACjG,OAAO,EAAC,sCAAsC,EAAC,MAAM,0CAA0C,CAAC;AAEhG,MAAM,OAAO,+BAA+B;IAIxC,YAAY,wBAAyD;QACjE,IAAI,CAAC,0BAA0B,GAAG,IAAI,sCAAsC,CAAC,wBAAwB,CAAC,CAAC;IAC3G,CAAC;IAEY,aAAa,CAAC,qBAAkD,EAAE,eAAiC;;YAC5G,MAAM,QAAQ,GAAwB,MAAM,IAAI,CAAC,0BAA0B,CAAC,aAAa,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;YAClI,OAAO,OAAO,QAAQ,KAAK,QAAQ,CAAC,CAAC,CAAC,QAAQ,CAAC,CAAC,iCACzC,QAAQ,KACX,KAAK,EAAE;oBACH,UAAU,EAAC,MAAM;oBACjB,KAAK,EAAC,uBAAuB,CAAC,mBAAmB,CAAC,QAAQ;iBAC7D,GACJ,CAAC;QACN,CAAC;KAAA;IAEY,mBAAmB,CAAC,qBAAkD,EAAE,eAAiC;;YAClH,OAAO,IAAI,CAAC,0BAA0B,CAAC,mBAAmB,CAAC,qBAAqB,EAAE,eAAe,CAAC,CAAC;QACvG,CAAC;KAAA;IAEY,sBAAsB,CAAC,qBAAkD,EAAE,eAAiC;;YACrH,OAAO,uBAAuB,CAAC,mBAAmB,CAAC,GAAG,CAAC;QAC3D,CAAC;KAAA;CACJ"}
|
|
@@ -12,8 +12,8 @@ export class SequenceTrackTitleFactory {
|
|
|
12
12
|
this.entityInstanceTranslator = entityInstanceTranslator;
|
|
13
13
|
}
|
|
14
14
|
getTrackTitle(alignmentQueryContext) {
|
|
15
|
-
var _a, _b, _c;
|
|
16
15
|
return __awaiter(this, void 0, void 0, function* () {
|
|
16
|
+
var _a, _b, _c;
|
|
17
17
|
let rowTitle;
|
|
18
18
|
if (!alignmentQueryContext.excludeFirstRowLink && alignmentQueryContext.from === SequenceReference.Uniprot) {
|
|
19
19
|
rowTitle = {
|
|
@@ -45,14 +45,14 @@ export class SequenceTrackTitleFactory {
|
|
|
45
45
|
});
|
|
46
46
|
}
|
|
47
47
|
getTrackTitlePrefix(alignmentQueryContext) {
|
|
48
|
-
var _a;
|
|
49
48
|
return __awaiter(this, void 0, void 0, function* () {
|
|
49
|
+
var _a;
|
|
50
50
|
return (alignmentQueryContext.from && !alignmentQueryContext.from.includes("PDB")) ? alignmentQueryContext.from.replace("_", " ") + " " + TagDelimiter.sequenceTitle : ((_a = alignmentQueryContext.sequencePrefix) !== null && _a !== void 0 ? _a : "");
|
|
51
51
|
});
|
|
52
52
|
}
|
|
53
53
|
getTrackTitleFlagColor(alignmentQueryContext) {
|
|
54
|
-
var _a;
|
|
55
54
|
return __awaiter(this, void 0, void 0, function* () {
|
|
55
|
+
var _a;
|
|
56
56
|
const queryId = (_a = alignmentQueryContext.queryId) !== null && _a !== void 0 ? _a : alignmentQueryContext.groupId;
|
|
57
57
|
assertDefined(queryId), assertDefined(alignmentQueryContext.from);
|
|
58
58
|
return TrackUtils.getProvenanceConfigFormTarget(queryId, alignmentQueryContext.from).color;
|
|
@@ -65,3 +65,4 @@ export class SequenceTrackTitleFactory {
|
|
|
65
65
|
return (labelAsymId === authAsymId || !authAsymId ? labelAsymId : labelAsymId + "[auth " + authAsymId + "]");
|
|
66
66
|
}
|
|
67
67
|
}
|
|
68
|
+
//# sourceMappingURL=SequenceTrackTitleFactory.js.map
|
|
@@ -0,0 +1 @@
|
|
|
1
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+
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