@rcsb/rcsb-saguaro-app 6.2.3 → 6.2.4

package/lib/commonjs/RcsbUtils/TrackGenerators/AlignmentGlobalBindingSite.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.alignmentGlobalLigandBindingSite = void 0;
+exports.alignmentGlobalLigandBindingSite = alignmentGlobalLigandBindingSite;
 const tslib_1 = require("tslib");
 const RcsbAnnotationConstants_1 = require("../../RcsbAnnotationConfig/RcsbAnnotationConstants");
 const GroupExternalTrackBuilder_1 = require("./GroupExternalTrackBuilder");
@@ -13,8 +13,8 @@ function alignmentGlobalLigandBindingSite() {
     const groupTrackBuilder = (0, GroupExternalTrackBuilder_1.groupExternalTrackBuilder)();
     return {
         addTo(tracks) {
-            var _a;
             return tslib_1.__awaiter(this, void 0, void 0, function* () {
+                var _a;
                 if (Array.from(bindingSiteMap.values()).length > 0)
                     tracks.annotationTracks.unshift({
                         trackId: "annotationTrack_GLOBAL_BINDINGS",
@@ -33,15 +33,15 @@ function alignmentGlobalLigandBindingSite() {
             });
         },
         processAlignmentAndFeatures(data) {
-            var _a;
             return tslib_1.__awaiter(this, void 0, void 0, function* () {
+                var _a;
                 yield ((_a = groupTrackBuilder.processAlignmentAndFeatures) === null || _a === void 0 ? void 0 : _a.call(groupTrackBuilder, data));
                 processFeatures(data.annotations);
             });
         },
         filterFeatures(data) {
-            var _a, _b;
             return tslib_1.__awaiter(this, void 0, void 0, function* () {
+                var _a, _b;
                 const annotations = (_b = yield ((_a = groupTrackBuilder.filterFeatures) === null || _a === void 0 ? void 0 : _a.call(groupTrackBuilder, data))) !== null && _b !== void 0 ? _b : [];
                 annotations.forEach(ann => {
                     var _a;
@@ -100,4 +100,3 @@ function alignmentGlobalLigandBindingSite() {
         });
     }
 }
-exports.alignmentGlobalLigandBindingSite = alignmentGlobalLigandBindingSite;

package/lib/commonjs/RcsbUtils/TrackGenerators/BurialFraction.js

@@ -1,6 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.burialFractionFilter = exports.burialFraction = void 0;
+exports.burialFraction = burialFraction;
+exports.burialFractionFilter = burialFractionFilter;
 const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
 const lodash_1 = require("lodash");
 const FeatureType_1 = require("../../RcsbExport/FeatureType");
@@ -56,7 +57,6 @@ function burialFraction(annotations) {
     });
     return burialFractionOut;
 }
-exports.burialFraction = burialFraction;
 function burialFractionFilter(annotations) {
     return (0, lodash_1.cloneDeep)(annotations).map(ann => {
         var _a;
@@ -64,4 +64,3 @@ function burialFractionFilter(annotations) {
         return ann;
     }).filter(ann => { var _a, _b; return (((_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.length) !== null && _b !== void 0 ? _b : 0) > 0); });
 }
-exports.burialFractionFilter = burialFractionFilter;

package/lib/commonjs/RcsbUtils/TrackGenerators/BuriedResidues.js

@@ -1,6 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.buriedResiduesFilter = exports.buriedResidues = void 0;
+exports.buriedResidues = buriedResidues;
+exports.buriedResiduesFilter = buriedResiduesFilter;
 const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
 const lodash_1 = require("lodash");
 const FeatureType_1 = require("../../RcsbExport/FeatureType");
@@ -41,7 +42,6 @@ function buriedResidues(annotations) {
     }
     return nBuried > 0 && buriedResidues ? [buriedResidues] : [];
 }
-exports.buriedResidues = buriedResidues;
 function buriedResiduesFilter(annotations) {
     return (0, lodash_1.cloneDeep)(annotations).map(ann => {
         var _a;
@@ -49,4 +49,3 @@ function buriedResiduesFilter(annotations) {
         return ann;
     }).filter(ann => { var _a, _b; return (((_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.length) !== null && _b !== void 0 ? _b : 0) > 0); });
 }
-exports.buriedResiduesFilter = buriedResiduesFilter;

package/lib/commonjs/RcsbUtils/TrackGenerators/GroupExternalTrackBuilder.js

@@ -1,6 +1,6 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.groupExternalTrackBuilder = void 0;
+exports.groupExternalTrackBuilder = groupExternalTrackBuilder;
 const Logo_1 = require("./Logo");
 const RcsbAnnotationConstants_1 = require("../../RcsbAnnotationConfig/RcsbAnnotationConstants");
 const Assertions_1 = require("../Helpers/Assertions");
@@ -97,4 +97,3 @@ function groupExternalTrackBuilder() {
             }];
     }
 }
-exports.groupExternalTrackBuilder = groupExternalTrackBuilder;

package/lib/commonjs/RcsbUtils/TrackGenerators/UnmodeledTrackBuilder.js

@@ -1,6 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.UnmodeledTrackBuilder = exports.addUnmodeledTrackBuilder = void 0;
+exports.UnmodeledTrackBuilder = void 0;
+exports.addUnmodeledTrackBuilder = addUnmodeledTrackBuilder;
 const tslib_1 = require("tslib");
 const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
 const lodash_1 = require("lodash");
@@ -15,15 +16,14 @@ function addUnmodeledTrackBuilder(unmodeledTrackBuilder, externalTrackBuilder) {
         ];
     });
     return Object.assign(Object.assign({}, externalTrackBuilder), { filterFeatures: (data) => tslib_1.__awaiter(this, void 0, void 0, function* () {
-            var _c, _d, _e;
-            (_c = externalTrackBuilder === null || externalTrackBuilder === void 0 ? void 0 : externalTrackBuilder.filterFeatures) === null || _c === void 0 ? void 0 : _c.call(externalTrackBuilder, data);
+            var _a, _b, _c;
+            (_a = externalTrackBuilder === null || externalTrackBuilder === void 0 ? void 0 : externalTrackBuilder.filterFeatures) === null || _a === void 0 ? void 0 : _a.call(externalTrackBuilder, data);
             return trackBuilder({
-                annotations: (_e = yield ((_d = externalTrackBuilder === null || externalTrackBuilder === void 0 ? void 0 : externalTrackBuilder.filterFeatures) === null || _d === void 0 ? void 0 : _d.call(externalTrackBuilder, data))) !== null && _e !== void 0 ? _e : data.annotations,
+                annotations: (_c = yield ((_b = externalTrackBuilder === null || externalTrackBuilder === void 0 ? void 0 : externalTrackBuilder.filterFeatures) === null || _b === void 0 ? void 0 : _b.call(externalTrackBuilder, data))) !== null && _c !== void 0 ? _c : data.annotations,
                 rcsbContext: data.rcsbContext
             });
         }) });
 }
-exports.addUnmodeledTrackBuilder = addUnmodeledTrackBuilder;
 class UnmodeledTrackBuilder {
     constructor() {
         this.unmodeledDescription = new Map();
@@ -42,8 +42,8 @@ class UnmodeledTrackBuilder {
         return new UnobservedToolTip(this.unmodeledDescription);
     }
     buildUnobserved(annotations, rcsbContext) {
-        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a;
             const nInstances = (yield RcsbRequestContextManager_1.rcsbRequestCtxManager.getEntityProperties((_a = rcsbContext.entityId) !== null && _a !== void 0 ? _a : "none"))[0].instances.length;
             const featurePositions = Array.from(annotations.filter(ann => {
                 var _a, _b, _c;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@rcsb/rcsb-saguaro-app",
-  "version": "6.2.3",
+  "version": "6.2.4",
   "description": "RCSB 1D Saguaro Web App",
   "main": "build/app.js",
   "files": [