@rcsb/rcsb-saguaro-app 6.2.0 → 6.2.2

package/lib/commonjs/RcsbFvWeb/RcsbFvBuilder.js

@@ -1,6 +1,27 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.buildDataProviderFv = exports.buildUniprotAlignmentFv = exports.buildSequenceIdentityAlignmentFv = exports.buildGroupFv = exports.buildChromosome = exports.buildEntityChromosome = exports.buildEntryChromosome = exports.buildFullChromosome = exports.buildPairwiseAlignment = exports.buildPfv = exports.buildUniprotEntityInstanceFv = exports.buildUniprotEntityFv = exports.buildInstanceFv = exports.buildEntityFv = exports.buildUniprotFv = exports.buildAssemblySequenceFv = exports.buildMultipleInstanceSequenceFv = exports.buildInstanceSequenceFv = exports.buildSingleEntitySummaryFv = exports.buildEntitySummaryFv = exports.buildMultipleAlignmentSequenceFv = exports.unmount = void 0;
+exports.unmount = unmount;
+exports.buildMultipleAlignmentSequenceFv = buildMultipleAlignmentSequenceFv;
+exports.buildEntitySummaryFv = buildEntitySummaryFv;
+exports.buildSingleEntitySummaryFv = buildSingleEntitySummaryFv;
+exports.buildInstanceSequenceFv = buildInstanceSequenceFv;
+exports.buildMultipleInstanceSequenceFv = buildMultipleInstanceSequenceFv;
+exports.buildAssemblySequenceFv = buildAssemblySequenceFv;
+exports.buildUniprotFv = buildUniprotFv;
+exports.buildEntityFv = buildEntityFv;
+exports.buildInstanceFv = buildInstanceFv;
+exports.buildUniprotEntityFv = buildUniprotEntityFv;
+exports.buildUniprotEntityInstanceFv = buildUniprotEntityInstanceFv;
+exports.buildPfv = buildPfv;
+exports.buildPairwiseAlignment = buildPairwiseAlignment;
+exports.buildFullChromosome = buildFullChromosome;
+exports.buildEntryChromosome = buildEntryChromosome;
+exports.buildEntityChromosome = buildEntityChromosome;
+exports.buildChromosome = buildChromosome;
+exports.buildGroupFv = buildGroupFv;
+exports.buildSequenceIdentityAlignmentFv = buildSequenceIdentityAlignmentFv;
+exports.buildUniprotAlignmentFv = buildUniprotAlignmentFv;
+exports.buildDataProviderFv = buildDataProviderFv;
 const RcsbFvCoreBuilder_1 = require("./RcsbFvBuilder/RcsbFvCoreBuilder");
 const RcsbFvChromosomeBuilder_1 = require("./RcsbFvBuilder/RcsbFvChromosomeBuilder");
 const RcsbFvPairwiseAligmentBuilder_1 = require("./RcsbFvBuilder/RcsbFvPairwiseAligmentBuilder");
@@ -16,88 +37,66 @@ const RcsbFvDataProviderBuilder_1 = require("./RcsbFvBuilder/RcsbFvDataProviderB
 function unmount(elementId) {
     RcsbFvCoreBuilder_1.RcsbFvCoreBuilder.unmount(elementId);
 }
-exports.unmount = unmount;
 function buildMultipleAlignmentSequenceFv(elementFvId, elementSelectId, upAcc, config = {}, additionalConfig) {
     return RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotMultipleEntitySequenceFv(elementFvId, elementSelectId, upAcc, config, additionalConfig);
 }
-exports.buildMultipleAlignmentSequenceFv = buildMultipleAlignmentSequenceFv;
 function buildEntitySummaryFv(elementFvId, elementSelectId, entityId) {
     return RcsbFvEntityBuilder_1.RcsbFvEntityBuilder.buildEntitySummaryFv(elementFvId, elementSelectId, entityId);
 }
-exports.buildEntitySummaryFv = buildEntitySummaryFv;
 function buildSingleEntitySummaryFv(elementId, entityId) {
     return RcsbFvEntityBuilder_1.RcsbFvEntityBuilder.buildSingleEntitySummaryFv(elementId, entityId);
 }
-exports.buildSingleEntitySummaryFv = buildSingleEntitySummaryFv;
 function buildInstanceSequenceFv(elementFvId, elementSelectId, entryId, config = {}, additionalConfig) {
     return RcsbFvInstanceBuilder_1.RcsbFvInstanceBuilder.buildInstanceSequenceFv(elementFvId, elementSelectId, entryId, config, additionalConfig);
 }
-exports.buildInstanceSequenceFv = buildInstanceSequenceFv;
 function buildMultipleInstanceSequenceFv(elementFvId, elementEntrySelectId, elementInstanceSelectId, entryIdList, config = {}, additionalConfig) {
     return RcsbFvInstanceBuilder_1.RcsbFvInstanceBuilder.buildMultipleInstanceSequenceFv(elementFvId, elementEntrySelectId, elementInstanceSelectId, entryIdList, config, additionalConfig);
 }
-exports.buildMultipleInstanceSequenceFv = buildMultipleInstanceSequenceFv;
 function buildAssemblySequenceFv(elementFvId, elementSelectAssemblyId, elementSelectInstanceId, entryId, onAsseblyChangeCallback, onInstanceChangeCallback) {
     return RcsbFvAssemblyBuilder_1.RcsbFvAssemblyBuilder.buildAssemblySequenceFv(elementFvId, elementSelectAssemblyId, elementSelectInstanceId, entryId, onAsseblyChangeCallback, onInstanceChangeCallback);
 }
-exports.buildAssemblySequenceFv = buildAssemblySequenceFv;
 function buildUniprotFv(elementId, upAcc, additionalConfig) {
     return RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotFv(elementId, upAcc, additionalConfig);
 }
-exports.buildUniprotFv = buildUniprotFv;
 function buildEntityFv(elementId, entityId, additionalConfig) {
     return RcsbFvEntityBuilder_1.RcsbFvEntityBuilder.buildEntityFv(elementId, entityId, additionalConfig);
 }
-exports.buildEntityFv = buildEntityFv;
 function buildInstanceFv(elementId, instanceId, additionalConfig) {
     return RcsbFvInstanceBuilder_1.RcsbFvInstanceBuilder.buildInstanceFv(elementId, instanceId, additionalConfig);
 }
-exports.buildInstanceFv = buildInstanceFv;
 function buildUniprotEntityFv(elementId, upAcc, entityId, additionalConfig) {
     return RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotEntityFv(elementId, upAcc, entityId, additionalConfig);
 }
-exports.buildUniprotEntityFv = buildUniprotEntityFv;
 function buildUniprotEntityInstanceFv(elementId, upAcc, entityId, instanceId, additionalConfig) {
     return RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotEntityInstanceFv(elementId, upAcc, entityId, instanceId, additionalConfig);
 }
-exports.buildUniprotEntityInstanceFv = buildUniprotEntityInstanceFv;
 function buildPfv(elementId, config) {
     return RcsbFvProteinSequenceBuilder_1.RcsbFvProteinSequenceBuilder.buildPfv(elementId, config);
 }
-exports.buildPfv = buildPfv;
 function buildPairwiseAlignment(elementId, psa, additionalConfig) {
     return RcsbFvPairwiseAligmentBuilder_1.RcsbFvPairwiseAligmentBuilder.buildPairwiseAlignment(elementId, psa, additionalConfig);
 }
-exports.buildPairwiseAlignment = buildPairwiseAlignment;
 function buildFullChromosome(elementFvId, chrId) {
     return RcsbFvChromosomeBuilder_1.RcsbFvChromosomeBuilder.buildFullChromosome(elementFvId, chrId);
 }
-exports.buildFullChromosome = buildFullChromosome;
 function buildEntryChromosome(elementFvId, entitySelectId, chromosomeSelectId, entryId) {
     return RcsbFvChromosomeBuilder_1.RcsbFvChromosomeBuilder.buildEntryChromosome(elementFvId, entitySelectId, chromosomeSelectId, entryId);
 }
-exports.buildEntryChromosome = buildEntryChromosome;
 function buildEntityChromosome(elementFvId, elementSelectId, entityId) {
     return RcsbFvChromosomeBuilder_1.RcsbFvChromosomeBuilder.buildEntityChromosome(elementFvId, elementSelectId, entityId);
 }
-exports.buildEntityChromosome = buildEntityChromosome;
 function buildChromosome(elementFvId, entityId, chrId, elementSelectId) {
     return RcsbFvChromosomeBuilder_1.RcsbFvChromosomeBuilder.buildChromosome(elementFvId, chrId, elementSelectId);
 }
-exports.buildChromosome = buildChromosome;
 function buildGroupFv(elementId, groupProvenanceId, groupId, query, additionalConfig) {
     RcsbFvGroupTabsBuilder_1.RcsbFvGroupTabsBuilder.buildGroupTabs(elementId, groupProvenanceId, groupId, query, additionalConfig);
 }
-exports.buildGroupFv = buildGroupFv;
 function buildSequenceIdentityAlignmentFv(elementId, groupId, query, additionalConfig) {
     return RcsbFvGroupAlignmentBuilder_1.RcsbFvGroupAlignmentBuilder.buildGroupAlignmentFv(elementId, DwEnums_1.GroupProvenanceId.ProvenanceSequenceIdentity, groupId, query, additionalConfig);
 }
-exports.buildSequenceIdentityAlignmentFv = buildSequenceIdentityAlignmentFv;
 function buildUniprotAlignmentFv(elementId, upAcc, query, additionalConfig) {
     return RcsbFvGroupAlignmentBuilder_1.RcsbFvGroupAlignmentBuilder.buildGroupAlignmentFv(elementId, DwEnums_1.GroupProvenanceId.ProvenanceMatchingUniprotAccession, upAcc, query, additionalConfig);
 }
-exports.buildUniprotAlignmentFv = buildUniprotAlignmentFv;
 function buildDataProviderFv(elementId, dataProvider, additionalConfig) {
     return RcsbFvDataProviderBuilder_1.RcsbFvDataProviderBuilder.buildFv(elementId, Object.assign(Object.assign({}, additionalConfig), { dataProvider: Object.assign({}, dataProvider) }));
 }
-exports.buildDataProviderFv = buildDataProviderFv;

package/lib/commonjs/RcsbFvWeb/RcsbFvComponents/ComponentsManager.d.ts

@@ -1,4 +1,3 @@
-/// <reference types="react" />
 import { GroupedOptionsInterface, SelectOptionInterface, SelectOptionProps } from "./SelectButton";
 export interface SelectButtonConfigInterface {
     addTitle?: boolean;

package/lib/commonjs/RcsbFvWeb/RcsbFvComponents/LoaderSpinner.js

@@ -4,10 +4,10 @@ exports.LoaderSpinner = void 0;
 const tslib_1 = require("tslib");
 const jsx_runtime_1 = require("react/jsx-runtime");
 const react_1 = tslib_1.__importDefault(require("react"));
-const load_spinner_scss_1 = tslib_1.__importDefault(require("../../scss/load-spinner.scss"));
+const classes = tslib_1.__importStar(require("../../scss/load-spinner.scss"));
 class LoaderSpinner extends react_1.default.Component {
     render() {
-        return ((0, jsx_runtime_1.jsx)("div", { style: { position: "absolute", left: 0, right: 0, marginLeft: "auto", zIndex: Number.MAX_SAFE_INTEGER, marginRight: "auto" }, children: (0, jsx_runtime_1.jsx)("div", { className: load_spinner_scss_1.default.loadSpinnerComponentScope, children: (0, jsx_runtime_1.jsx)("div", { className: "loader" }) }) }));
+        return ((0, jsx_runtime_1.jsx)("div", { style: { position: "absolute", left: 0, right: 0, marginLeft: "auto", zIndex: Number.MAX_SAFE_INTEGER, marginRight: "auto" }, children: (0, jsx_runtime_1.jsx)("div", { className: classes.loadSpinnerComponentScope, children: (0, jsx_runtime_1.jsx)("div", { className: "loader" }) }) }));
     }
 }
 exports.LoaderSpinner = LoaderSpinner;

package/lib/commonjs/RcsbFvWeb/RcsbFvComponents/RcsbTabs.js

@@ -5,14 +5,14 @@ const tslib_1 = require("tslib");
 const jsx_runtime_1 = require("react/jsx-runtime");
 const react_1 = tslib_1.__importDefault(require("react"));
 const react_bootstrap_1 = require("react-bootstrap");
-const bootstrap_fv_display_module_scss_1 = tslib_1.__importDefault(require("../../scss/bootstrap-fv-display.module.scss"));
+const classes = tslib_1.__importStar(require("../../scss/bootstrap-fv-display.module.scss"));
 const uniqid_1 = tslib_1.__importDefault(require("uniqid"));
 class RcsbTabs extends react_1.default.Component {
     constructor(props) {
         super(props);
     }
     render() {
-        return ((0, jsx_runtime_1.jsx)("div", { className: bootstrap_fv_display_module_scss_1.default.bootstrapFvComponentScope, children: (0, jsx_runtime_1.jsx)(react_bootstrap_1.Tabs, { id: this.props.id, defaultActiveKey: this.props.default, onSelect: (eventKey) => {
+        return ((0, jsx_runtime_1.jsx)("div", { className: classes.bootstrapFvComponentScope, children: (0, jsx_runtime_1.jsx)(react_bootstrap_1.Tabs, { id: this.props.id, defaultActiveKey: this.props.default, onSelect: (eventKey) => {
                     this.props.onSelect(eventKey);
                 }, children: this.props.tabList.map((tab, n) => ((0, jsx_runtime_1.jsxs)(react_bootstrap_1.Tab, { eventKey: tab.key, title: tab.title, children: [tab.additionalComponent, (0, jsx_runtime_1.jsx)("div", { id: tab.key + RcsbTabs.UI_SUFFIX, style: { height: 20 } }), (0, jsx_runtime_1.jsx)("div", { id: tab.key })] }, (0, uniqid_1.default)(`${tab.key}_`)))) }) }));
     }

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.js

@@ -8,18 +8,18 @@ class AlignmentBlockFactory {
         this.trackConfigModifier = trackModifier;
     }
     getBlock(alignmentRequestContext, alignmentData) {
-        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a;
             alignmentRequestContext = Object.assign(Object.assign({}, alignmentRequestContext), { querySequence: (_a = alignmentData.query_sequence) !== null && _a !== void 0 ? _a : undefined });
             if (!alignmentData.target_alignment)
                 return [];
             return (yield Promise.all(alignmentData.target_alignment.map((alignment, index) => tslib_1.__awaiter(this, void 0, void 0, function* () {
-                var _b, _c;
-                if (alignmentRequestContext.filterByTargetContains != null && !((_b = alignment === null || alignment === void 0 ? void 0 : alignment.target_id) === null || _b === void 0 ? void 0 : _b.includes(alignmentRequestContext.filterByTargetContains)))
+                var _a, _b;
+                if (alignmentRequestContext.filterByTargetContains != null && !((_a = alignment === null || alignment === void 0 ? void 0 : alignment.target_id) === null || _a === void 0 ? void 0 : _a.includes(alignmentRequestContext.filterByTargetContains)))
                     return;
                 if ((alignment === null || alignment === void 0 ? void 0 : alignment.target_sequence) == null)
                     return;
-                return Object.assign(Object.assign({}, yield this.trackFactory.getTrack(alignmentRequestContext, alignment)), yield ((_c = this.trackConfigModifier) === null || _c === void 0 ? void 0 : _c.call(this, alignmentRequestContext, alignment, alignmentData, index)));
+                return Object.assign(Object.assign({}, yield this.trackFactory.getTrack(alignmentRequestContext, alignment)), yield ((_b = this.trackConfigModifier) === null || _b === void 0 ? void 0 : _b.call(this, alignmentRequestContext, alignment, alignmentData, index)));
             })))).filter((x) => x != undefined);
         });
     }

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.js

@@ -36,8 +36,8 @@ class AnnotationBlockManager {
         ].flat();
     }
     processAnnotations(requestConfig, data) {
-        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b;
             yield Promise.all(data.map(ann => {
                 var _a, _b;
                 return (_b = (_a = ann.features) === null || _a === void 0 ? void 0 : _a.map((feature) => tslib_1.__awaiter(this, void 0, void 0, function* () {
@@ -49,8 +49,8 @@ class AnnotationBlockManager {
         });
     }
     addFeature(requestConfig, ann, feature) {
-        var _a, _b, _c, _d, _e;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d, _e;
             if (feature.type && ((_a = this.rcsbAnnotationConfig.getConfig(feature.type)) === null || _a === void 0 ? void 0 : _a.ignore))
                 return;
             const type = yield this.rcsbAnnotationConfig.getAnnotationType(requestConfig, ann, feature);

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js

@@ -15,8 +15,8 @@ class SequenceTrackFactory {
         this.trackTitleFactory = trackTitleFactory !== null && trackTitleFactory !== void 0 ? trackTitleFactory : new SequenceTrackTitleFactory_1.SequenceTrackTitleFactory(entityInstanceTranslator);
     }
     getTrack(alignmentQueryContext, querySequence) {
-        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b;
             const queryId = (_a = alignmentQueryContext.queryId) !== null && _a !== void 0 ? _a : alignmentQueryContext.groupId;
             assertDefined(queryId);
             return {

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.js

@@ -12,8 +12,8 @@ class AnnotationsTrackTitleFactory {
         });
     }
     getTrackTitleFlagColor(trackManager) {
-        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b;
             const provenance = Array.from((_b = (_a = trackManager.getConfig()) === null || _a === void 0 ? void 0 : _a.provenanceList) !== null && _b !== void 0 ? _b : []);
             if (provenance.length == 1
                 &&
@@ -26,8 +26,8 @@ class AnnotationsTrackTitleFactory {
         });
     }
     getTrackTitlePrefix(trackManager) {
-        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b;
             return (_b = (_a = trackManager.getConfig()) === null || _a === void 0 ? void 0 : _a.prefix) !== null && _b !== void 0 ? _b : "";
         });
     }

package/lib/commonjs/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js

@@ -15,8 +15,8 @@ class SequenceTrackTitleFactory {
         this.entityInstanceTranslator = entityInstanceTranslator;
     }
     getTrackTitle(alignmentQueryContext) {
-        var _a, _b, _c;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c;
             let rowTitle;
             if (!alignmentQueryContext.excludeFirstRowLink && alignmentQueryContext.from === GqlTypes_1.SequenceReference.Uniprot) {
                 rowTitle = {
@@ -48,14 +48,14 @@ class SequenceTrackTitleFactory {
         });
     }
     getTrackTitlePrefix(alignmentQueryContext) {
-        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a;
             return (alignmentQueryContext.from && !alignmentQueryContext.from.includes("PDB")) ? alignmentQueryContext.from.replace("_", " ") + " " + TagDelimiter_1.TagDelimiter.sequenceTitle : ((_a = alignmentQueryContext.sequencePrefix) !== null && _a !== void 0 ? _a : "");
         });
     }
     getTrackTitleFlagColor(alignmentQueryContext) {
-        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a;
             const queryId = (_a = alignmentQueryContext.queryId) !== null && _a !== void 0 ? _a : alignmentQueryContext.groupId;
             assertDefined(queryId), assertDefined(alignmentQueryContext.from);
             return TrackUtils_1.TrackUtils.getProvenanceConfigFormTarget(queryId, alignmentQueryContext.from).color;

package/lib/commonjs/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js

@@ -79,8 +79,8 @@ class GroupPfvTabs extends react_1.default.Component {
         });
     }
     renderPositionalFeatureViewer(tabKey) {
-        var _a, _b, _c, _d, _e;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d, _e;
             switch (tabKey) {
                 case ALIGNMENT:
                     this.featureViewers.set(tabKey, yield GroupPfvApp_1.GroupPfvApp.alignment(tabKey.toString(), this.props.groupProvenanceId, this.props.groupId, (_a = this.entityCount) !== null && _a !== void 0 ? _a : 0, Object.assign(Object.assign({ page: { first: 50, after: "0" } }, this.props.additionalConfig), { alignmentFilter: this.filterEntities })));

package/lib/commonjs/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js

@@ -1,6 +1,7 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.getReferenceFromGroupProvenance = exports.GroupPfvApp = void 0;
+exports.GroupPfvApp = void 0;
+exports.getReferenceFromGroupProvenance = getReferenceFromGroupProvenance;
 const tslib_1 = require("tslib");
 const DwEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums");
 const RcsbFvUniprotBuilder_1 = require("../../RcsbFvBuilder/RcsbFvUniprotBuilder");
@@ -15,8 +16,8 @@ const PaginationItemComponent_1 = require("../../../RcsbFvUI/Components/Paginati
 var GroupPfvApp;
 (function (GroupPfvApp) {
     function alignment(elementId, groupProvenanceId, groupId, entityCount, additionalConfig) {
-        var _a, _b, _c, _d, _e, _f, _g, _h, _j;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             switch (groupProvenanceId) {
                 case DwEnums_1.GroupProvenanceId.ProvenanceMatchingUniprotAccession:
                     return RcsbFvUniprotBuilder_1.RcsbFvUniprotBuilder.buildUniprotMultipleEntitySequenceFv(elementId, elementId + RcsbTabs_1.RcsbTabs.SELECT_SUFFIX, groupId, {}, additionalConfig);
@@ -52,8 +53,8 @@ var GroupPfvApp;
     }
     GroupPfvApp.alignment = alignment;
     function structure(elementId, groupProvenanceId, groupId, nTargets, additionalConfig) {
-        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a;
             additionalConfig = Object.assign(Object.assign({}, additionalConfig), { filters: [...((_a = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.filters) !== null && _a !== void 0 ? _a : []), {
                         field: GqlTypes_1.FieldName.Type,
                         values: [GqlTypes_1.Type.HelixP, GqlTypes_1.Type.Sheet, GqlTypes_1.Type.Cath, GqlTypes_1.Type.Scop],
@@ -77,8 +78,8 @@ var GroupPfvApp;
     }
     GroupPfvApp.structure = structure;
     function bindingSites(elementId, groupProvenanceId, groupId, nTargets, additionalConfig) {
-        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a;
             additionalConfig = Object.assign(Object.assign({}, additionalConfig), { filters: [...((_a = additionalConfig === null || additionalConfig === void 0 ? void 0 : additionalConfig.filters) !== null && _a !== void 0 ? _a : []), {
                         field: GqlTypes_1.FieldName.Type,
                         values: [GqlTypes_1.Type.BindingSite],
@@ -132,4 +133,3 @@ function getReferenceFromGroupProvenance(groupProvenanceId) {
             return GqlTypes_1.GroupReference.MatchingUniprotAccession;
     }
 }
-exports.getReferenceFromGroupProvenance = getReferenceFromGroupProvenance;

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.js

@@ -94,8 +94,8 @@ class RcsbFvAbstractModule {
         return this.rcsbFvRowUpdatePromise;
     }
     buildAlignmentTracks(alignmentRequestContext, alignmentResponse, trackFactories) {
-        var _a, _b, _c, _d;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d;
             const sequenceTrackFactory = (_a = trackFactories === null || trackFactories === void 0 ? void 0 : trackFactories.sequenceTrackFactory) !== null && _a !== void 0 ? _a : new SequenceTrackFactory_1.SequenceTrackFactory(this.getPolymerEntityInstanceTranslator());
             if (alignmentResponse.query_sequence)
                 this.referenceTrack = yield sequenceTrackFactory.getTrack(alignmentRequestContext, alignmentResponse.query_sequence);
@@ -104,8 +104,8 @@ class RcsbFvAbstractModule {
         });
     }
     buildAnnotationsTrack(annotationsRequestContext, annotationsFeatures, annotationConfigMap) {
-        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b;
             const defaultAnnotationConfigMap = annotationConfigMap !== null && annotationConfigMap !== void 0 ? annotationConfigMap : acm;
             const annotationsBlockFactory = new AnnotationsBlockFactory_1.AnnotationsBlockFactory(new AnnotationBlockManager_1.AnnotationBlockManager(new AnnotationTrackManager_1.AnnotationTrackManagerFactory(), new RcsbAnnotationConfig_1.RcsbAnnotationConfig(defaultAnnotationConfigMap), this.getPolymerEntityInstanceTranslator()), new AnnotationsTrackFactory_1.AnnotationsTrackFactory(), (_b = (_a = this.buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.trackConfigModifier) === null || _b === void 0 ? void 0 : _b.annotations);
             this.annotationTracks = yield annotationsBlockFactory.getBlock(annotationsRequestContext, annotationsFeatures);
@@ -122,8 +122,8 @@ class RcsbFvAbstractModule {
         });
     }
     buildExternalTracks() {
-        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b;
             const externalTrackBuilder = (_a = this.buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.externalTrackBuilder;
             const rcsbContext = (_b = this.buildConfig.additionalConfig) === null || _b === void 0 ? void 0 : _b.rcsbContext;
             if (!externalTrackBuilder)

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js

@@ -142,8 +142,8 @@ class RcsbFvChromosome extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         this.collectChromosomeAlignments(chrId, GqlTypes_1.SequenceReference.NcbiProtein);
     }
     collectPdbWorkerResults(ar, pdbEntityId, chrId) {
-        var _c, _d;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _c, _d;
             assertElementListDefined(ar.target_alignment);
             const exonTracks = this.collectExons(ar.target_alignment, "target", RcsbAnnotationConstants_1.RcsbAnnotationConstants.provenanceColorCode.rcsbPdb, RcsbAnnotationConstants_1.RcsbAnnotationConstants.provenanceColorCode.rcsbPdb, GqlTypes_1.SequenceReference.PdbEntity, chrId);
             this.pdbEntityTrack = this.mergeExonTracks(exonTracks, GqlTypes_1.SequenceReference.PdbEntity)[0];
@@ -624,8 +624,8 @@ class RcsbFvChromosome extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         });
     }
     setDisplayView() {
-        var _c, _d, _e, _f, _g, _h, _j;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _c, _d, _e, _f, _g, _h, _j;
             if (this.entityBegin == 0 && this.entityEnd == 0 && ((_e = (_d = (_c = this.pdbEntityTrack) === null || _c === void 0 ? void 0 : _c.displayConfig) === null || _d === void 0 ? void 0 : _d.length) !== null && _e !== void 0 ? _e : 0) > 0) {
                 const d = (_f = this.pdbEntityTrack.displayConfig) === null || _f === void 0 ? void 0 : _f[0].displayData;
                 if (!d)
@@ -662,8 +662,8 @@ class RcsbFvChromosome extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         });
     }
     plot() {
-        var _c, _d, _e, _f;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _c, _d, _e, _f;
             console.log("PROCESSING");
             let tracks = new Array();
             let ncbiTracks = new Array();

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvDataProvider.js

@@ -6,8 +6,8 @@ const RcsbFvAbstractModule_1 = require("./RcsbFvAbstractModule");
 const PlainAlignmentTrackFactory_1 = require("../RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory");
 class RcsbFvDataProvider extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
-        var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o;
             if ((_b = (_a = this.buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.dataProvider) === null || _b === void 0 ? void 0 : _b.alignments) {
                 this.alignmentCollector = this.buildConfig.additionalConfig.dataProvider.alignments.collector;
                 const alignmentResponse = yield this.alignmentCollector.collect(Object.assign({}, (_d = (_c = this.buildConfig.additionalConfig) === null || _c === void 0 ? void 0 : _c.dataProvider) === null || _d === void 0 ? void 0 : _d.alignments.context), (_e = this.buildConfig.additionalConfig) === null || _e === void 0 ? void 0 : _e.alignmentFilter);

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js

@@ -14,8 +14,8 @@ class RcsbFvEntity extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         this.unmodeledTrackBuilder = new UnmodeledTrackBuilder_1.UnmodeledTrackBuilder();
     }
     protectedBuild() {
-        var _a, _b, _c, _d, _e, _f, _g;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d, _e, _f, _g;
             const buildConfig = this.buildConfig;
             assertDefined(buildConfig.entityId);
             const alignmentRequestContext = {

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js

@@ -12,8 +12,8 @@ const Operator_1 = require("../../RcsbUtils/Helpers/Operator");
 const RcsbRequestContextManager_1 = require("../../RcsbRequest/RcsbRequestContextManager");
 class RcsbFvGroupAlignment extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
-        var _a, _b, _c, _d, _e, _f, _g, _h, _j;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             const buildConfig = this.buildConfig;
             assertDefined(buildConfig.groupId), assertDefined(buildConfig.group), assertDefined((_a = buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.page);
             const alignmentRequestContext = {

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAnnotation.js

@@ -10,8 +10,8 @@ var assertDefined = Assertions_1.Assertions.assertDefined;
 const annotationConfigMap = acm;
 class RcsbFvGroupAnnotation extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
-        var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l;
             const buildConfig = this.buildConfig;
             assertDefined(buildConfig.group), assertDefined(buildConfig.groupId), assertDefined((_a = buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.page);
             const alignmentRequestContext = {

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.js

@@ -11,8 +11,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvInstance extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
-        var _a, _b, _c, _d;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d;
             const buildConfig = this.buildConfig;
             const instanceId = buildConfig.instanceId;
             assertDefined(instanceId);

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.js

@@ -1,6 +1,8 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.filter = exports.interfaceAnnotations = exports.RcsbFvInterface = void 0;
+exports.RcsbFvInterface = void 0;
+exports.interfaceAnnotations = interfaceAnnotations;
+exports.filter = filter;
 const tslib_1 = require("tslib");
 const GqlTypes_1 = require("@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes");
 const RcsbFvAbstractModule_1 = require("./RcsbFvAbstractModule");
@@ -17,8 +19,8 @@ const TagDelimiter_1 = require("@rcsb/rcsb-api-tools/build/RcsbUtils/TagDelimite
 const annotationConfigMap = acm;
 class RcsbFvInterface extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
-        var _a, _b, _c, _d, _e;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d, _e;
             const buildConfig = this.buildConfig;
             const instanceId = buildConfig.instanceId;
             assertDefined(instanceId);
@@ -63,8 +65,8 @@ class RcsbFvInterface extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
                     this.alignmentTracks.concat(this.annotationTracks);
     }
     typeSuffix(ann, d) {
-        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a;
             if (ann.source === GqlTypes_1.Source.PdbInterface && ((_a = ann.target_identifiers) === null || _a === void 0 ? void 0 : _a.interface_id)) {
                 return ann.target_identifiers.interface_id + "|" + ann.target_identifiers.interface_partner_index;
             }
@@ -120,10 +122,8 @@ function interfaceAnnotations(annotations) {
         resolve(out);
     });
 }
-exports.interfaceAnnotations = interfaceAnnotations;
 function filter(ann) {
     return new Promise(resolve => {
         resolve((0, BurialFraction_1.burialFractionFilter)((0, BuriedResidues_1.buriedResiduesFilter)(ann)));
     });
 }
-exports.filter = filter;

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvPairwiseAlignment.js

@@ -8,8 +8,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvPairwiseAlignment extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
-        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a;
             const buildConfig = this.buildConfig;
             assertDefined(buildConfig.psa);
             const pab = new PairwiseAlignmentBuilder_1.PairwiseAlignmentBuilder(buildConfig.psa);

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvProteinSequence.js

@@ -8,8 +8,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvProteinSequence extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
-        var _a, _b, _c, _d, _e;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d, _e;
             const buildConfig = this.buildConfig;
             const queryId = buildConfig.queryId;
             assertDefined(queryId);

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprot.js

@@ -10,8 +10,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvUniprot extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
-        var _a, _b, _c, _d;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d;
             const buildConfig = this.buildConfig;
             const upAcc = buildConfig.upAcc;
             assertDefined(upAcc);

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotAlignment.js

@@ -10,8 +10,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvUniprotAlignment extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
-        var _a, _b, _c, _d, _e, _f, _g, _h, _j;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c, _d, _e, _f, _g, _h, _j;
             const buildConfig = this.buildConfig;
             assertDefined((_a = buildConfig.additionalConfig) === null || _a === void 0 ? void 0 : _a.page), assertDefined(buildConfig.upAcc);
             const alignmentRequestContext = {

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotEntity.js

@@ -14,8 +14,8 @@ class RcsbFvUniprotEntity extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         this.unmodeledTrackBuilder = new UnmodeledTrackBuilder_1.UnmodeledTrackBuilder();
     }
     protectedBuild() {
-        var _a, _b, _c;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c;
             const buildConfig = this.buildConfig;
             const upAcc = buildConfig.upAcc;
             const entityId = buildConfig.entityId;
@@ -65,8 +65,8 @@ class RcsbFvUniprotEntity extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
         this.rowConfigData = [this.referenceTrack].concat(this.alignmentTracks).concat(this.annotationTracks);
     }
     titleSuffix(ann, d) {
-        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a;
             if (this.polymerEntityInstance != null && ann.source === GqlTypes_1.Source.PdbInstance) {
                 const labelAsymId = (_a = ann.target_id) === null || _a === void 0 ? void 0 : _a.split(TagDelimiter_1.TagDelimiter.instance)[1];
                 if (!labelAsymId)

package/lib/commonjs/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotInstance.js

@@ -9,8 +9,8 @@ const Assertions_1 = require("../../RcsbUtils/Helpers/Assertions");
 var assertDefined = Assertions_1.Assertions.assertDefined;
 class RcsbFvUniprotInstance extends RcsbFvAbstractModule_1.RcsbFvAbstractModule {
     protectedBuild() {
-        var _a, _b, _c;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b, _c;
             const buildConfig = this.buildConfig;
             const upAcc = buildConfig.upAcc;
             const entityId = buildConfig.entityId;

package/lib/commonjs/RcsbGroupWeb/RcsbGroupBuilder.js

@@ -1,6 +1,11 @@
 "use strict";
 Object.defineProperty(exports, "__esModule", { value: true });
-exports.searchQueryContextManager = exports.buildResidueDistribution = exports.buildGroupContent = exports.buildGroupMembers = exports.buildGroup = exports.buildSearchRequest = void 0;
+exports.searchQueryContextManager = void 0;
+exports.buildSearchRequest = buildSearchRequest;
+exports.buildGroup = buildGroup;
+exports.buildGroupMembers = buildGroupMembers;
+exports.buildGroupContent = buildGroupContent;
+exports.buildResidueDistribution = buildResidueDistribution;
 const tslib_1 = require("tslib");
 const RcsbGroupDisplay_1 = require("./RcsbGroupView/RcsbGroupDisplay");
 const EntityGranularitySearchFacetStore_1 = require("../RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore");
@@ -10,25 +15,20 @@ function buildSearchRequest(elementId, searchQuery, returnType) {
         yield RcsbGroupDisplay_1.RcsbGroupDisplay.displayRcsbSearchStats(elementId, EntityGranularitySearchFacetStore_1.entityGranularityGroupFacetStore, searchQuery, returnType);
     });
 }
-exports.buildSearchRequest = buildSearchRequest;
 function buildGroup(elementId, groupProvenance, groupId, query, facetLayoutGrid, additionalProperties) {
     return tslib_1.__awaiter(this, void 0, void 0, function* () {
         yield RcsbGroupDisplay_1.RcsbGroupDisplay.displaySearchAttributes(elementId, groupProvenance, groupId, query, facetLayoutGrid, additionalProperties);
     });
 }
-exports.buildGroup = buildGroup;
 function buildGroupMembers(elementId, groupProvenance, groupId, nRows, nColumns, query) {
     RcsbGroupDisplay_1.RcsbGroupDisplay.displayGroupMembers(elementId, groupProvenance, groupId, nRows, nColumns, query);
 }
-exports.buildGroupMembers = buildGroupMembers;
 function buildGroupContent(elementId, groupProvenance, groupId, query, textConfig) {
     RcsbGroupDisplay_1.RcsbGroupDisplay.displayGroupContent(elementId, groupProvenance, groupId, query, textConfig);
 }
-exports.buildGroupContent = buildGroupContent;
 function buildResidueDistribution(elementId, granularity, rcsbId, facetLayoutGrid, chartDisplayConfig) {
     RcsbGroupDisplay_1.RcsbGroupDisplay.displayResidueDistribution(elementId, granularity, rcsbId, facetLayoutGrid, chartDisplayConfig);
 }
-exports.buildResidueDistribution = buildResidueDistribution;
 exports.searchQueryContextManager = {
     subscribe(f) {
         return SearchQueryContextManager_1.SearchQueryContextManager.subscribe(f);

package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartTools.js

@@ -11,8 +11,8 @@ const RcsbRequestContextManager_1 = require("../../../RcsbRequest/RcsbRequestCon
 var GroupChartMap;
 (function (GroupChartMap) {
     function getChartMap(groupProvenanceId, groupId, searchQuery) {
-        var _a;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a;
             const facetStore = SearchQueryTools_1.SearchQueryTools.getFacetStoreFromGroupProvenance(groupProvenanceId);
             let facets = [];
             for (const service of facetStore.getServices()) {
@@ -48,8 +48,8 @@ var GroupChartMap;
     }
     GroupChartMap.getChartMap = getChartMap;
     function subtractSearchQuery(chartData, groupProvenanceId, groupId, searchQuery) {
-        var _a, _b;
         return tslib_1.__awaiter(this, void 0, void 0, function* () {
+            var _a, _b;
             const facetStore = SearchQueryTools_1.SearchQueryTools.getFacetStoreFromGroupProvenance(groupProvenanceId);
             let subData;
             let partialFacets = [];