@rcsb/rcsb-saguaro-app 6.2.0 → 6.2.1

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (7) hide show
  1. package/build/app.js +1 -1
  2. package/build/plot.js +1 -1
  3. package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.ac.json +25 -1
  4. package/lib/RcsbFvExamples/GroupHistogram.js +3 -6
  5. package/lib/commonjs/RcsbAnnotationConfig/RcsbAnnotationConfig.ac.json +25 -1
  6. package/lib/commonjs/RcsbFvExamples/GroupHistogram.js +3 -6
  7. package/package.json +1 -1
package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.ac.json CHANGED
@@ -104,7 +104,9 @@
104
104
  "MOGUL_BOND_OUTLIER",
105
105
  "STEREO_OUTLIER",
106
106
  "CIS_PEPTIDE",
107
- "BINDING_SITE",
107
+ "LIGAND_INTERACTION",
108
+ "LIGAND_COVALENT_LINKAGE",
109
+ "LIGAND_METAL_COORDINATION_LINKAGE",
108
110
  "ASA_UNBOUND",
109
111
  "ASA_BOUND",
110
112
  "BURIAL_FRACTION",
@@ -292,6 +294,28 @@
292
294
  "color": "#984657",
293
295
  "title": "BINDING SITE",
294
296
  "key": "name",
297
+ "addToType": ["feature_id"],
298
+ "ignore": true
299
+ }, {
300
+ "type": "LIGAND_INTERACTION",
301
+ "display": "pin",
302
+ "color": "#984657",
303
+ "title": "BINDING SITE",
304
+ "key": "name",
305
+ "addToType": ["feature_id"]
306
+ }, {
307
+ "type": "LIGAND_COVALENT_LINKAGE",
308
+ "display": "pin",
309
+ "color": "#984657",
310
+ "title": "COVALENT LINKAGE",
311
+ "key": "name",
312
+ "addToType": ["feature_id"]
313
+ }, {
314
+ "type": "LIGAND_METAL_COORDINATION_LINKAGE",
315
+ "display": "pin",
316
+ "color": "#984657",
317
+ "title": "METAL COORDINATION",
318
+ "key": "name",
295
319
  "addToType": ["feature_id"]
296
320
  }, {
297
321
  "type": "MUTAGENESIS_SITE",
package/lib/RcsbFvExamples/GroupHistogram.js CHANGED
@@ -1,11 +1,7 @@
1
1
  import { buildGroup } from "../RcsbGroupWeb/RcsbGroupBuilder";
2
2
  import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
3
- import { rcsbRequestCtxManager } from "../RcsbRequest/RcsbRequestContextManager";
4
3
  import { CATH_FACET, DISEASE_FACET, GO_COMPONENT_FACET, GO_FUNCTION_FACET, GO_PROCESS_FACET, INTERPRO_FACET, PHENOTYPE_FACET, RELEASE_DATE_FACET, RESOLUTION_FACET, TAXONOMY_COUNT_FACET } from "../RcsbSeacrh/FacetStore/SingleFacets";
5
- const groupId = "O14744";
6
- rcsbRequestCtxManager.initializeArchesClient({
7
- uri: "http://132.249.213.75/rcsbsearch/v2/query"
8
- });
4
+ const groupId = "P01112";
9
5
  // buildGroupContent("select", GroupProvenanceId.ProvenanceSequenceIdentity, groupId);
10
6
  // buildGroupMembers("carousel", GroupProvenanceId.ProvenanceSequenceIdentity, groupId, 1, 1)
11
7
  buildGroup("pfv", GroupProvenanceId.ProvenanceSequenceIdentity, groupId, undefined, [
@@ -26,6 +22,7 @@ buildGroup("pfv_3", GroupProvenanceId.ProvenanceSequenceIdentity, groupId, undef
26
22
  buildGroup("pfv_2", GroupProvenanceId.ProvenanceSequenceIdentity, groupId, undefined, [
27
23
  GO_PROCESS_FACET.attributeName,
28
24
  GO_COMPONENT_FACET.attributeName,
29
- GO_FUNCTION_FACET.attributeName
25
+ GO_FUNCTION_FACET.attributeName,
26
+ PHENOTYPE_FACET.attributeName
30
27
  ]).then((m) => {
31
28
  });
package/lib/commonjs/RcsbAnnotationConfig/RcsbAnnotationConfig.ac.json CHANGED
@@ -104,7 +104,9 @@
104
104
  "MOGUL_BOND_OUTLIER",
105
105
  "STEREO_OUTLIER",
106
106
  "CIS_PEPTIDE",
107
- "BINDING_SITE",
107
+ "LIGAND_INTERACTION",
108
+ "LIGAND_COVALENT_LINKAGE",
109
+ "LIGAND_METAL_COORDINATION_LINKAGE",
108
110
  "ASA_UNBOUND",
109
111
  "ASA_BOUND",
110
112
  "BURIAL_FRACTION",
@@ -292,6 +294,28 @@
292
294
  "color": "#984657",
293
295
  "title": "BINDING SITE",
294
296
  "key": "name",
297
+ "addToType": ["feature_id"],
298
+ "ignore": true
299
+ }, {
300
+ "type": "LIGAND_INTERACTION",
301
+ "display": "pin",
302
+ "color": "#984657",
303
+ "title": "BINDING SITE",
304
+ "key": "name",
305
+ "addToType": ["feature_id"]
306
+ }, {
307
+ "type": "LIGAND_COVALENT_LINKAGE",
308
+ "display": "pin",
309
+ "color": "#984657",
310
+ "title": "COVALENT LINKAGE",
311
+ "key": "name",
312
+ "addToType": ["feature_id"]
313
+ }, {
314
+ "type": "LIGAND_METAL_COORDINATION_LINKAGE",
315
+ "display": "pin",
316
+ "color": "#984657",
317
+ "title": "METAL COORDINATION",
318
+ "key": "name",
295
319
  "addToType": ["feature_id"]
296
320
  }, {
297
321
  "type": "MUTAGENESIS_SITE",
package/lib/commonjs/RcsbFvExamples/GroupHistogram.js CHANGED
@@ -2,12 +2,8 @@
2
2
  Object.defineProperty(exports, "__esModule", { value: true });
3
3
  const RcsbGroupBuilder_1 = require("../RcsbGroupWeb/RcsbGroupBuilder");
4
4
  const DwEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums");
5
- const RcsbRequestContextManager_1 = require("../RcsbRequest/RcsbRequestContextManager");
6
5
  const SingleFacets_1 = require("../RcsbSeacrh/FacetStore/SingleFacets");
7
- const groupId = "O14744";
8
- RcsbRequestContextManager_1.rcsbRequestCtxManager.initializeArchesClient({
9
- uri: "http://132.249.213.75/rcsbsearch/v2/query"
10
- });
6
+ const groupId = "P01112";
11
7
  // buildGroupContent("select", GroupProvenanceId.ProvenanceSequenceIdentity, groupId);
12
8
  // buildGroupMembers("carousel", GroupProvenanceId.ProvenanceSequenceIdentity, groupId, 1, 1)
13
9
  (0, RcsbGroupBuilder_1.buildGroup)("pfv", DwEnums_1.GroupProvenanceId.ProvenanceSequenceIdentity, groupId, undefined, [
@@ -28,6 +24,7 @@ RcsbRequestContextManager_1.rcsbRequestCtxManager.initializeArchesClient({
28
24
  (0, RcsbGroupBuilder_1.buildGroup)("pfv_2", DwEnums_1.GroupProvenanceId.ProvenanceSequenceIdentity, groupId, undefined, [
29
25
  SingleFacets_1.GO_PROCESS_FACET.attributeName,
30
26
  SingleFacets_1.GO_COMPONENT_FACET.attributeName,
31
- SingleFacets_1.GO_FUNCTION_FACET.attributeName
27
+ SingleFacets_1.GO_FUNCTION_FACET.attributeName,
28
+ SingleFacets_1.PHENOTYPE_FACET.attributeName
32
29
  ]).then((m) => {
33
30
  });
package/package.json CHANGED
@@ -1,6 +1,6 @@
1
1
  {
2
2
  "name": "@rcsb/rcsb-saguaro-app",
3
- "version": "6.2.0",
3
+ "version": "6.2.1",
4
4
  "description": "RCSB 1D Saguaro Web App",
5
5
  "main": "build/app.js",
6
6
  "files": [