@rcsb/rcsb-saguaro-app 6.0.0 → 6.0.2

package/lib/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.d.ts

@@ -1,6 +1,6 @@
 import { QueryEntriesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
 import { StructureDeterminationMethodology } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
-export interface EntryPropertyIntreface {
+export interface EntryPropertyInterface {
     rcsbId: string;
     entryId: string;
     experimentalMethod: string;
@@ -13,10 +13,11 @@ export interface EntryPropertyIntreface {
     structureDeterminationMethodology: StructureDeterminationMethodology;
     nonPolymerEntityToInstance: Map<string, Array<string>>;
     instanceToOperator: Map<string, Map<string, Array<string>>>;
+    entityToPrd: Map<string, string>;
 }
 export declare class MultipleEntryPropertyCollector {
     private readonly rcsbFvQuery;
-    collect(requestConfig: QueryEntriesArgs): Promise<Array<EntryPropertyIntreface>>;
+    collect(requestConfig: QueryEntriesArgs): Promise<Array<EntryPropertyInterface>>;
     private static getEntryProperties;
     private static instanceToOperator;
 }

package/lib/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.js

@@ -14,7 +14,7 @@ export class MultipleEntryPropertyCollector {
         });
     }
     static getEntryProperties(r) {
-        var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o, _p;
+        var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o, _p, _q, _r;
         return {
             rcsbId: r.rcsb_id,
             entryId: r.rcsb_id,
@@ -27,7 +27,8 @@ export class MultipleEntryPropertyCollector {
             entityToInstance: (_m = (_l = r.polymer_entities) === null || _l === void 0 ? void 0 : _l.map(pe => { var _a; return [pe === null || pe === void 0 ? void 0 : pe.rcsb_id, (_a = pe === null || pe === void 0 ? void 0 : pe.polymer_entity_instances) === null || _a === void 0 ? void 0 : _a.map(pei => pei === null || pei === void 0 ? void 0 : pei.rcsb_id)]; }).reduce((r, x) => r.set(x[0], x[1]), new Map())) !== null && _m !== void 0 ? _m : new Map(),
             structureDeterminationMethodology: r.rcsb_entry_info.structure_determination_methodology,
             nonPolymerEntityToInstance: (_p = (_o = r.nonpolymer_entities) === null || _o === void 0 ? void 0 : _o.map(pe => { var _a; return [pe === null || pe === void 0 ? void 0 : pe.rcsb_id, (_a = pe === null || pe === void 0 ? void 0 : pe.nonpolymer_entity_instances) === null || _a === void 0 ? void 0 : _a.map(pei => pei === null || pei === void 0 ? void 0 : pei.rcsb_id)]; }).reduce((r, x) => r.set(x[0], x[1]), new Map())) !== null && _p !== void 0 ? _p : new Map(),
-            instanceToOperator: MultipleEntryPropertyCollector.instanceToOperator(r)
+            instanceToOperator: MultipleEntryPropertyCollector.instanceToOperator(r),
+            entityToPrd: (_r = (_q = r.polymer_entities) === null || _q === void 0 ? void 0 : _q.filter((pe) => typeof pe != "undefined").map(pe => { var _a, _b, _c; return [(_a = pe === null || pe === void 0 ? void 0 : pe.rcsb_id) !== null && _a !== void 0 ? _a : "", (_c = (_b = pe === null || pe === void 0 ? void 0 : pe.entity_poly) === null || _b === void 0 ? void 0 : _b.rcsb_prd_id) !== null && _c !== void 0 ? _c : ""]; }).reduce((map, pair) => map.set(pair[0], pair[1]), new Map())) !== null && _r !== void 0 ? _r : new Map()
         };
     }
     static instanceToOperator(r) {

package/lib/RcsbFvExamples/GroupHistogram.js

@@ -1,9 +1,9 @@
 import { buildGroup, buildGroupContent, buildGroupMembers } from "../RcsbGroupWeb/RcsbGroupBuilder";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
-const groupId = "1534_30";
+const groupId = "P00720";
 buildGroupContent("select", GroupProvenanceId.ProvenanceSequenceIdentity, groupId);
 buildGroupMembers("carousel", GroupProvenanceId.ProvenanceSequenceIdentity, groupId, 1, 1);
-buildGroup("pfv", GroupProvenanceId.ProvenanceSequenceIdentity, groupId, undefined, ["ENTITY_NAME_FACET", "RELEASE_DATE_FACET", "METHODOLOGY_FACET"]).then((m) => {
+buildGroup("pfv", GroupProvenanceId.ProvenanceSequenceIdentity, groupId, undefined, ["CHIMERIC_FACET"]).then((m) => {
 });
 buildGroup("pfv_2", GroupProvenanceId.ProvenanceSequenceIdentity, groupId, undefined, ["RESOLUTION_FACET", "EXPERIMENTAL_METHOD_FACET"]).then((m) => {
 });

package/lib/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.js

@@ -50,24 +50,35 @@ export var GroupChartEvents;
     function addBarChartClick(chart, returnType) {
         if (chart.chartConfig)
             chart.chartConfig.barClickCallback = (datum, data, e) => __awaiter(this, void 0, void 0, function* () {
+                var _a, _b;
                 if (datum.id === "excluded")
                     return;
-                let query = SQT.searchAttributeQuery(chart.attribute, datum.x, Operator.ExactMatch, Service.Text);
-                if (chart.filters)
-                    chart.filters.forEach(f => {
-                        query = SQT.addNewNodeToAttributeSearchQuery(f.attribute, f.value, f.operator, query, f.service);
-                    });
-                yield clickEvent(e !== null && e !== void 0 ? e : { shiftKey: false }, chart, query, returnType);
+                if ((_a = chart.facetConfig) === null || _a === void 0 ? void 0 : _a.bucketClickSearchQuery) {
+                    const query = (_b = chart.facetConfig) === null || _b === void 0 ? void 0 : _b.bucketClickSearchQuery(datum, data, e);
+                    yield clickEvent(e !== null && e !== void 0 ? e : { shiftKey: false }, chart, query, returnType);
+                }
+                else {
+                    let query = SQT.searchAttributeQuery(chart.attribute, datum.x, Operator.ExactMatch, Service.Text);
+                    if (chart.filters)
+                        chart.filters.forEach(f => {
+                            query = SQT.addNewNodeToAttributeSearchQuery(f.attribute, f.value, f.operator, query, f.service);
+                        });
+                    yield clickEvent(e !== null && e !== void 0 ? e : { shiftKey: false }, chart, query, returnType);
+                }
             });
     }
     function addHistogramChartClick(chart, returnType) {
         if (chart.chartConfig)
             chart.chartConfig.barClickCallback = (datum, data, e) => __awaiter(this, void 0, void 0, function* () {
-                var _a;
+                var _a, _b, _c;
                 if (datum.id === "excluded")
                     return;
-                if (((_a = chart.chartConfig) === null || _a === void 0 ? void 0 : _a.mergeDomainMaxValue) && parseFloat(datum.x.toString()) >= chart.chartConfig.mergeDomainMaxValue) {
-                    const query = SQT.searchAttributeQuery(chart.attribute, chart.chartConfig.mergeDomainMaxValue, Operator.GreaterOrEqual, Service.Text);
+                if ((_a = chart.facetConfig) === null || _a === void 0 ? void 0 : _a.bucketClickSearchQuery) {
+                    const query = (_b = chart.facetConfig) === null || _b === void 0 ? void 0 : _b.bucketClickSearchQuery(datum, data, e);
+                    yield clickEvent(e !== null && e !== void 0 ? e : { shiftKey: false }, chart, query, returnType);
+                }
+                else if (((_c = chart.facetConfig) === null || _c === void 0 ? void 0 : _c.mergeDomainMaxValue) && parseFloat(datum.x.toString()) >= chart.facetConfig.mergeDomainMaxValue) {
+                    const query = SQT.searchAttributeQuery(chart.attribute, chart.facetConfig.mergeDomainMaxValue, Operator.GreaterOrEqual, Service.Text);
                     yield clickEvent(e !== null && e !== void 0 ? e : { shiftKey: false }, chart, query, returnType);
                 }
                 else {

package/lib/RcsbQueries/Yosemite/QueryMultipleEntriesProperties.graphql

@@ -16,6 +16,9 @@ query multiple_entries_properties($entry_ids: [String!]!){
                 }
                 rcsb_id
             }
+            entity_poly {
+                rcsb_prd_id
+            }
         }
         nonpolymer_entities {
             rcsb_id

package/lib/RcsbRequest/RcsbRequestContextManager.d.ts

@@ -5,7 +5,7 @@ import { QueryResult } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchR
 import { InterfaceInstanceTranslate } from "../RcsbUtils/Translators/InterfaceInstanceTranslate";
 import { PolymerEntityChromosomeTranslate } from "../RcsbUtils/Translators/PolymerEntityChromosomeTranslate";
 import { QueryPolymer_Entity_GroupArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
-import { EntryPropertyIntreface } from "../RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector";
+import { EntryPropertyInterface } from "../RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector";
 import { FacetType } from "../RcsbSeacrh/FacetStore/FacetMemberInterface";
 import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
 import { ResultsContentType, SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
@@ -34,7 +34,7 @@ declare class RcsbRequestContextManager {
     private readonly multipleInstanceSequenceCollector;
     readonly modelKey: string;
     getEntityProperties(entityIds: string | Array<string>): Promise<Array<PolymerEntityInterface>>;
-    getEntryProperties(entryIds: string | Array<string>): Promise<Array<EntryPropertyIntreface>>;
+    getEntryProperties(entryIds: string | Array<string>): Promise<Array<EntryPropertyInterface>>;
     getInstanceSequences(instanceIds: string | string[]): Promise<InstanceSequenceInterface[]>;
     getEntityToInstance(entryId: string): Promise<PolymerEntityInstanceTranslate>;
     getEntryToAssembly(entryId: string): Promise<EntryAssemblyTranslate>;

package/lib/RcsbSeacrh/FacetStore/FacetMemberInterface.d.ts

@@ -1,6 +1,9 @@
 import { ChartConfigInterface, ChartType } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
-import { AttributeFacetType, FilterFacetType } from "@rcsb/rcsb-search-tools/lib/SearchParseTools/SearchFacetInterface";
+import { AttributeFacetType, BucketDataType, FilterFacetType } from "@rcsb/rcsb-search-tools/lib/SearchParseTools/SearchFacetInterface";
 import { RcsbSearchAttributeType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata";
+import { SearchQueryType } from "@rcsb/rcsb-search-tools/lib/SearchQueryTools/SearchQueryInterfaces";
+import { ChartDataColumnInterface, ChartDataValueInterface } from "@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface";
+import React from "react";
 export type FacetType = AttributeFacetType | FilterFacetType;
 export interface FacetMemberInterface {
     id: string;
@@ -8,9 +11,13 @@ export interface FacetMemberInterface {
     attributeName: string;
     attribute: RcsbSearchAttributeType;
     chartType: ChartType;
-    chartConfig?: ChartConfigInterface & {
-        mergeDomainMaxValue?: number;
-    };
+    chartConfig?: ChartConfigInterface;
+    facetConfig?: FacetConfigInterface;
     facet: FacetType;
     contentType: "date" | "number" | "string";
 }
+export interface FacetConfigInterface {
+    mergeDomainMaxValue?: number;
+    facetTransform?: (d: BucketDataType[]) => BucketDataType[];
+    bucketClickSearchQuery?: (datum: ChartDataValueInterface, data: ChartDataColumnInterface[], e?: React.MouseEvent) => SearchQueryType;
+}

package/lib/RcsbSeacrh/FacetStore/SequenceGroupFacetStore.js

@@ -1,6 +1,6 @@
 import { ReturnType, Service } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
 import { RcsbSearchMetadata } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata";
-import { CHEM_COMP_FACET, ENTITY_NAME_FACET, EXPERIMENTAL_METHOD_FACET, LIGAND_FACET, ORGANISM_FACET, PFAM_FACET, RELEASE_DATE_FACET, RESOLUTION_FACET, SCOP_FACET, TAXONOMY_FACET, CATH_FACET, ECOD_FACET, ENZYME_CLASS_FACET, GO_FUNCTION_FACET, GO_PROCESS_FACET, GO_COMPONENT_FACET, METHODOLOGY_FACET } from "./SingleFacets";
+import { CHEM_COMP_FACET, ENTITY_NAME_FACET, EXPERIMENTAL_METHOD_FACET, LIGAND_FACET, ORGANISM_FACET, PFAM_FACET, RELEASE_DATE_FACET, RESOLUTION_FACET, SCOP_FACET, TAXONOMY_FACET, CATH_FACET, ECOD_FACET, ENZYME_CLASS_FACET, GO_FUNCTION_FACET, GO_PROCESS_FACET, GO_COMPONENT_FACET, METHODOLOGY_FACET, CHIMERIC_FACET } from "./SingleFacets";
 import { cloneDeep } from "lodash";
 class SequenceGroupFacetStore {
     constructor() {
@@ -24,7 +24,8 @@ class SequenceGroupFacetStore {
             cloneDeep(ENTITY_NAME_FACET),
             cloneDeep(GO_FUNCTION_FACET),
             cloneDeep(GO_PROCESS_FACET),
-            cloneDeep(GO_COMPONENT_FACET)
+            cloneDeep(GO_COMPONENT_FACET),
+            cloneDeep(CHIMERIC_FACET)
         ];
         this.nonPolymerFacet = [
             cloneDeep(CHEM_COMP_FACET)

package/lib/RcsbSeacrh/FacetStore/SingleFacets.d.ts

@@ -2,6 +2,7 @@ import { FacetMemberInterface } from "./FacetMemberInterface";
 export declare const EXPERIMENTAL_METHOD_FACET: FacetMemberInterface;
 export declare const RESOLUTION_FACET: FacetMemberInterface;
 export declare const METHODOLOGY_FACET: FacetMemberInterface;
+export declare const CHIMERIC_FACET: FacetMemberInterface;
 export declare const RELEASE_DATE_FACET: FacetMemberInterface;
 export declare const SCOP_FACET: FacetMemberInterface;
 export declare const CATH_FACET: FacetMemberInterface;
@@ -36,4 +37,5 @@ export declare const SearchFacets: {
     GO_COMPONENT_FACET: FacetMemberInterface;
     LIGAND_OF_INTEREST_FACET: FacetMemberInterface;
     METHODOLOGY_FACET: FacetMemberInterface;
+    CHIMERIC_FACET: FacetMemberInterface;
 };

package/lib/RcsbSeacrh/FacetStore/SingleFacets.js

@@ -1,6 +1,7 @@
 import { RcsbSearchMetadata } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata";
-import { AggregationType, Service, Type } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
+import { AggregationType, Operator, Service, Type } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
 import { ChartType } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
+import { SearchQueryTools as SQT } from "../SearchQueryTools";
 export const EXPERIMENTAL_METHOD_FACET = {
     id: "method",
     title: "Experimental Method",
@@ -43,7 +44,6 @@ export const RESOLUTION_FACET = {
             constHeight: 225
         },
         histogramBinIncrement: 0.5,
-        mergeDomainMaxValue: 5,
         domainMinValue: 0,
         domainMaxValue: 6,
         axisLabel: "Angstroms",
@@ -53,6 +53,9 @@ export const RESOLUTION_FACET = {
             return `Resolution ${d.x - 0.25} - ${d.x + 0.25}`;
         }
     },
+    facetConfig: {
+        mergeDomainMaxValue: 5
+    },
     facet: {
         name: "RESOLUTION_FACET",
         aggregation_type: AggregationType.Histogram,
@@ -78,6 +81,52 @@ export const METHODOLOGY_FACET = {
         min_interval_population: 1
     }
 };
+export const CHIMERIC_FACET = {
+    id: "chimeric",
+    title: "Protein Sequence Composition",
+    attributeName: "CHIMERIC_FACET",
+    attribute: RcsbSearchMetadata.RcsbPolymerEntity.RcsbSourcePartCount.path,
+    chartType: ChartType.barplot,
+    contentType: "string",
+    facetConfig: {
+        facetTransform: (buckets) => {
+            const out = [];
+            const wt = buckets.find(b => b.label == 1);
+            if (wt)
+                out.push({
+                    label: "Wild Type",
+                    population: wt.population
+                });
+            const synthetic = buckets.find(b => b.label == 0);
+            if (synthetic)
+                out.push({
+                    label: "Synthetic",
+                    population: synthetic.population
+                });
+            const chimeric = buckets.filter(b => parseInt(b.label.toString()) > 1);
+            if ((chimeric === null || chimeric === void 0 ? void 0 : chimeric.length) > 0)
+                out.push({
+                    label: "Chimeric",
+                    population: chimeric.reduce((c, p) => c + p.population, 0)
+                });
+            return out;
+        },
+        bucketClickSearchQuery: (datum, data, e) => {
+            if (datum.x == "Wild Type")
+                return SQT.searchAttributeQuery(CHIMERIC_FACET.attribute, 1, Operator.Equals, Service.Text);
+            else if (datum.x == "Synthetic")
+                return SQT.searchAttributeQuery(CHIMERIC_FACET.attribute, 0, Operator.Equals, Service.Text);
+            else
+                return SQT.searchAttributeQuery(CHIMERIC_FACET.attribute, 1, Operator.Greater, Service.Text);
+        }
+    },
+    facet: {
+        name: "CHIMERIC_FACET",
+        aggregation_type: AggregationType.Terms,
+        attribute: RcsbSearchMetadata.RcsbPolymerEntity.RcsbSourcePartCount.path,
+        min_interval_population: 1
+    }
+};
 export const RELEASE_DATE_FACET = {
     id: "release_date",
     title: undefined,
@@ -556,5 +605,6 @@ export const SearchFacets = {
     GO_PROCESS_FACET,
     GO_COMPONENT_FACET,
     LIGAND_OF_INTEREST_FACET,
-    METHODOLOGY_FACET
+    METHODOLOGY_FACET,
+    CHIMERIC_FACET
 };

package/lib/RcsbSeacrh/FacetStore/UniprotGroupFacetStore.js

@@ -1,6 +1,6 @@
 import { ReturnType, Service } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
 import { RcsbSearchMetadata } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata";
-import { CHEM_COMP_FACET, ENTITY_NAME_FACET, EXPERIMENTAL_METHOD_FACET, LIGAND_FACET, ORGANISM_FACET, PFAM_FACET, RELEASE_DATE_FACET, RESOLUTION_FACET, SCOP_FACET, TAXONOMY_FACET, CATH_FACET, ECOD_FACET, ENZYME_CLASS_FACET, GO_FUNCTION_FACET, GO_PROCESS_FACET, GO_COMPONENT_FACET, METHODOLOGY_FACET } from "./SingleFacets";
+import { CHEM_COMP_FACET, ENTITY_NAME_FACET, EXPERIMENTAL_METHOD_FACET, LIGAND_FACET, ORGANISM_FACET, PFAM_FACET, RELEASE_DATE_FACET, RESOLUTION_FACET, SCOP_FACET, TAXONOMY_FACET, CATH_FACET, ECOD_FACET, ENZYME_CLASS_FACET, GO_FUNCTION_FACET, GO_PROCESS_FACET, GO_COMPONENT_FACET, METHODOLOGY_FACET, CHIMERIC_FACET } from "./SingleFacets";
 import { cloneDeep } from "lodash";
 class UniprotGroupFacetStore {
     constructor() {
@@ -24,7 +24,8 @@ class UniprotGroupFacetStore {
             cloneDeep(ENTITY_NAME_FACET),
             cloneDeep(GO_FUNCTION_FACET),
             cloneDeep(GO_PROCESS_FACET),
-            cloneDeep(GO_COMPONENT_FACET)
+            cloneDeep(GO_COMPONENT_FACET),
+            cloneDeep(CHIMERIC_FACET)
         ];
         this.nonPolymerFacet = [
             cloneDeep(CHEM_COMP_FACET)

package/lib/RcsbSeacrh/FacetTools.d.ts

@@ -2,7 +2,7 @@ import { BucketFacet } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchR
 import { FacetMemberInterface } from "./FacetStore/FacetMemberInterface";
 import { AttributeTextQueryParameters } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { Service } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
-import { ChartDisplayConfigInterface, ChartObjectInterface, ChartType } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
+import { ChartDisplayConfigInterface, ChartObjectInterface } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
 import { RcsbSearchAttributeType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata";
 export type SearchFilter = {
     attribute: RcsbSearchAttributeType;
@@ -10,16 +10,10 @@ export type SearchFilter = {
     operator: AttributeTextQueryParameters["operator"];
     service: Service.Text | Service.TextChem;
 };
-export interface RcsbChartInterface<T = any> {
-    chartType: ChartType;
+export interface RcsbChartInterface<T = any> extends Omit<FacetMemberInterface, "id" | "facet"> {
     labelList?: string[];
-    attribute: RcsbSearchAttributeType;
-    attributeName: string;
-    chartConfig?: FacetMemberInterface["chartConfig"];
-    title?: string;
     data: ChartObjectInterface<T>[];
     filters?: SearchFilter[];
-    contentType: FacetMemberInterface['contentType'];
 }
 export declare class FacetTools {
     static getResultDrilldowns(facetMembers: FacetMemberInterface[], searchResultFacets: Array<BucketFacet>): Array<RcsbChartInterface>;
@@ -45,15 +39,15 @@ export declare class FacetTools {
             barClickCallback?: import("@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface").BarClickCallbackType | undefined;
             sort?: ((b: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface<any>, a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface<any>) => number) | undefined;
             tooltipText?: ((a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataValueInterface<any>) => string | string[] | undefined) | undefined;
-            mergeDomainMaxValue?: number | undefined;
         };
-        chartType: ChartType;
         labelList?: string[] | undefined;
-        attribute: RcsbSearchAttributeType;
-        attributeName: string;
-        title?: string | undefined;
         data: ChartObjectInterface<any>[];
         filters?: SearchFilter[] | undefined;
+        title?: string | undefined;
+        attribute: RcsbSearchAttributeType;
+        attributeName: string;
+        chartType: import("@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface").ChartType;
+        facetConfig?: import("./FacetStore/FacetMemberInterface").FacetConfigInterface | undefined;
         contentType: "string" | "number" | "date";
     };
     private static includeMissingFacets;

package/lib/RcsbSeacrh/FacetTools.js

@@ -9,17 +9,7 @@ export class FacetTools {
             if (!facet)
                 return;
             const chart = FacetTools.getFacetChartTypeFromAttribute(facetMembers, bucket.name);
-            out.push({
-                chartType: chart.chartType,
-                chartConfig: chart.chartConfig,
-                labelList: [],
-                attributeName: bucket.name,
-                attribute: facet.attribute,
-                title: chart.title,
-                data: applyChartConfigToData(bucket.data, facet === null || facet === void 0 ? void 0 : facet.chartConfig),
-                filters: FacetTools.getFacetFiltersFromName(facetMembers, bucket.name),
-                contentType: facet.contentType
-            });
+            out.push(Object.assign(Object.assign({}, chart), { labelList: [], attributeName: bucket.name, attribute: facet.attribute, data: applyChartConfigToData(bucket.data, facet === null || facet === void 0 ? void 0 : facet.facetConfig), filters: FacetTools.getFacetFiltersFromName(facetMembers, bucket.name), contentType: facet.contentType }));
         });
         return out;
     }
@@ -63,7 +53,7 @@ export class FacetTools {
         const facet = facetMembers.find((facet) => (facet.attributeName === attribute));
         if (!facet)
             throw `Unknown facet attribute ${attribute}`;
-        return { chartType: facet.chartType, chartConfig: facet.chartConfig, title: facet.title };
+        return facet;
     }
     static getFacetFiltersFromName(facetMembers, attribute) {
         const facet = facetMembers.find((facet) => (facet.attributeName === attribute));
@@ -90,9 +80,11 @@ export class FacetTools {
         }));
     }
 }
-function applyChartConfigToData(data, chartConfig) {
-    if (chartConfig === null || chartConfig === void 0 ? void 0 : chartConfig.mergeDomainMaxValue)
-        return mergeDomainMaxValue(data, chartConfig.mergeDomainMaxValue);
+function applyChartConfigToData(data, facetConfig) {
+    if (facetConfig === null || facetConfig === void 0 ? void 0 : facetConfig.mergeDomainMaxValue)
+        return mergeDomainMaxValue(data, facetConfig.mergeDomainMaxValue);
+    if (facetConfig === null || facetConfig === void 0 ? void 0 : facetConfig.facetTransform)
+        return facetConfig.facetTransform(data);
     return data;
 }
 function mergeDomainMaxValue(data, domMaxValue) {

package/lib/RcsbUtils/Groups/GroupPropertiesProvider.d.ts

@@ -1,6 +1,6 @@
-import { EntryPropertyIntreface } from "../../RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector";
+import { EntryPropertyInterface } from "../../RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector";
 export interface GroupPropertiesProviderInterface {
-    entryProperties: Array<EntryPropertyIntreface>;
+    entryProperties: Array<EntryPropertyInterface>;
 }
 interface ItemPropertyInterface {
     objectId: string;

package/lib/commonjs/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.d.ts

@@ -1,6 +1,6 @@
 import { QueryEntriesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
 import { StructureDeterminationMethodology } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
-export interface EntryPropertyIntreface {
+export interface EntryPropertyInterface {
     rcsbId: string;
     entryId: string;
     experimentalMethod: string;
@@ -13,10 +13,11 @@ export interface EntryPropertyIntreface {
     structureDeterminationMethodology: StructureDeterminationMethodology;
     nonPolymerEntityToInstance: Map<string, Array<string>>;
     instanceToOperator: Map<string, Map<string, Array<string>>>;
+    entityToPrd: Map<string, string>;
 }
 export declare class MultipleEntryPropertyCollector {
     private readonly rcsbFvQuery;
-    collect(requestConfig: QueryEntriesArgs): Promise<Array<EntryPropertyIntreface>>;
+    collect(requestConfig: QueryEntriesArgs): Promise<Array<EntryPropertyInterface>>;
     private static getEntryProperties;
     private static instanceToOperator;
 }

package/lib/commonjs/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.js

@@ -17,7 +17,7 @@ class MultipleEntryPropertyCollector {
         });
     }
     static getEntryProperties(r) {
-        var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o, _p;
+        var _a, _b, _c, _d, _e, _f, _g, _h, _j, _k, _l, _m, _o, _p, _q, _r;
         return {
             rcsbId: r.rcsb_id,
             entryId: r.rcsb_id,
@@ -30,7 +30,8 @@ class MultipleEntryPropertyCollector {
             entityToInstance: (_m = (_l = r.polymer_entities) === null || _l === void 0 ? void 0 : _l.map(pe => { var _a; return [pe === null || pe === void 0 ? void 0 : pe.rcsb_id, (_a = pe === null || pe === void 0 ? void 0 : pe.polymer_entity_instances) === null || _a === void 0 ? void 0 : _a.map(pei => pei === null || pei === void 0 ? void 0 : pei.rcsb_id)]; }).reduce((r, x) => r.set(x[0], x[1]), new Map())) !== null && _m !== void 0 ? _m : new Map(),
             structureDeterminationMethodology: r.rcsb_entry_info.structure_determination_methodology,
             nonPolymerEntityToInstance: (_p = (_o = r.nonpolymer_entities) === null || _o === void 0 ? void 0 : _o.map(pe => { var _a; return [pe === null || pe === void 0 ? void 0 : pe.rcsb_id, (_a = pe === null || pe === void 0 ? void 0 : pe.nonpolymer_entity_instances) === null || _a === void 0 ? void 0 : _a.map(pei => pei === null || pei === void 0 ? void 0 : pei.rcsb_id)]; }).reduce((r, x) => r.set(x[0], x[1]), new Map())) !== null && _p !== void 0 ? _p : new Map(),
-            instanceToOperator: MultipleEntryPropertyCollector.instanceToOperator(r)
+            instanceToOperator: MultipleEntryPropertyCollector.instanceToOperator(r),
+            entityToPrd: (_r = (_q = r.polymer_entities) === null || _q === void 0 ? void 0 : _q.filter((pe) => typeof pe != "undefined").map(pe => { var _a, _b, _c; return [(_a = pe === null || pe === void 0 ? void 0 : pe.rcsb_id) !== null && _a !== void 0 ? _a : "", (_c = (_b = pe === null || pe === void 0 ? void 0 : pe.entity_poly) === null || _b === void 0 ? void 0 : _b.rcsb_prd_id) !== null && _c !== void 0 ? _c : ""]; }).reduce((map, pair) => map.set(pair[0], pair[1]), new Map())) !== null && _r !== void 0 ? _r : new Map()
         };
     }
     static instanceToOperator(r) {

package/lib/commonjs/RcsbFvExamples/GroupHistogram.js

@@ -2,10 +2,10 @@
 Object.defineProperty(exports, "__esModule", { value: true });
 const RcsbGroupBuilder_1 = require("../RcsbGroupWeb/RcsbGroupBuilder");
 const DwEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums");
-const groupId = "1534_30";
+const groupId = "P00720";
 (0, RcsbGroupBuilder_1.buildGroupContent)("select", DwEnums_1.GroupProvenanceId.ProvenanceSequenceIdentity, groupId);
 (0, RcsbGroupBuilder_1.buildGroupMembers)("carousel", DwEnums_1.GroupProvenanceId.ProvenanceSequenceIdentity, groupId, 1, 1);
-(0, RcsbGroupBuilder_1.buildGroup)("pfv", DwEnums_1.GroupProvenanceId.ProvenanceSequenceIdentity, groupId, undefined, ["ENTITY_NAME_FACET", "RELEASE_DATE_FACET", "METHODOLOGY_FACET"]).then((m) => {
+(0, RcsbGroupBuilder_1.buildGroup)("pfv", DwEnums_1.GroupProvenanceId.ProvenanceSequenceIdentity, groupId, undefined, ["CHIMERIC_FACET"]).then((m) => {
 });
 (0, RcsbGroupBuilder_1.buildGroup)("pfv_2", DwEnums_1.GroupProvenanceId.ProvenanceSequenceIdentity, groupId, undefined, ["RESOLUTION_FACET", "EXPERIMENTAL_METHOD_FACET"]).then((m) => {
 });

package/lib/commonjs/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartEvents.js

@@ -53,24 +53,35 @@ var GroupChartEvents;
     function addBarChartClick(chart, returnType) {
         if (chart.chartConfig)
             chart.chartConfig.barClickCallback = (datum, data, e) => tslib_1.__awaiter(this, void 0, void 0, function* () {
+                var _a, _b;
                 if (datum.id === "excluded")
                     return;
-                let query = SearchQueryTools_1.SearchQueryTools.searchAttributeQuery(chart.attribute, datum.x, SearchEnums_1.Operator.ExactMatch, SearchEnums_1.Service.Text);
-                if (chart.filters)
-                    chart.filters.forEach(f => {
-                        query = SearchQueryTools_1.SearchQueryTools.addNewNodeToAttributeSearchQuery(f.attribute, f.value, f.operator, query, f.service);
-                    });
-                yield clickEvent(e !== null && e !== void 0 ? e : { shiftKey: false }, chart, query, returnType);
+                if ((_a = chart.facetConfig) === null || _a === void 0 ? void 0 : _a.bucketClickSearchQuery) {
+                    const query = (_b = chart.facetConfig) === null || _b === void 0 ? void 0 : _b.bucketClickSearchQuery(datum, data, e);
+                    yield clickEvent(e !== null && e !== void 0 ? e : { shiftKey: false }, chart, query, returnType);
+                }
+                else {
+                    let query = SearchQueryTools_1.SearchQueryTools.searchAttributeQuery(chart.attribute, datum.x, SearchEnums_1.Operator.ExactMatch, SearchEnums_1.Service.Text);
+                    if (chart.filters)
+                        chart.filters.forEach(f => {
+                            query = SearchQueryTools_1.SearchQueryTools.addNewNodeToAttributeSearchQuery(f.attribute, f.value, f.operator, query, f.service);
+                        });
+                    yield clickEvent(e !== null && e !== void 0 ? e : { shiftKey: false }, chart, query, returnType);
+                }
             });
     }
     function addHistogramChartClick(chart, returnType) {
         if (chart.chartConfig)
             chart.chartConfig.barClickCallback = (datum, data, e) => tslib_1.__awaiter(this, void 0, void 0, function* () {
-                var _a;
+                var _a, _b, _c;
                 if (datum.id === "excluded")
                     return;
-                if (((_a = chart.chartConfig) === null || _a === void 0 ? void 0 : _a.mergeDomainMaxValue) && parseFloat(datum.x.toString()) >= chart.chartConfig.mergeDomainMaxValue) {
-                    const query = SearchQueryTools_1.SearchQueryTools.searchAttributeQuery(chart.attribute, chart.chartConfig.mergeDomainMaxValue, SearchEnums_1.Operator.GreaterOrEqual, SearchEnums_1.Service.Text);
+                if ((_a = chart.facetConfig) === null || _a === void 0 ? void 0 : _a.bucketClickSearchQuery) {
+                    const query = (_b = chart.facetConfig) === null || _b === void 0 ? void 0 : _b.bucketClickSearchQuery(datum, data, e);
+                    yield clickEvent(e !== null && e !== void 0 ? e : { shiftKey: false }, chart, query, returnType);
+                }
+                else if (((_c = chart.facetConfig) === null || _c === void 0 ? void 0 : _c.mergeDomainMaxValue) && parseFloat(datum.x.toString()) >= chart.facetConfig.mergeDomainMaxValue) {
+                    const query = SearchQueryTools_1.SearchQueryTools.searchAttributeQuery(chart.attribute, chart.facetConfig.mergeDomainMaxValue, SearchEnums_1.Operator.GreaterOrEqual, SearchEnums_1.Service.Text);
                     yield clickEvent(e !== null && e !== void 0 ? e : { shiftKey: false }, chart, query, returnType);
                 }
                 else {

package/lib/commonjs/RcsbQueries/Yosemite/QueryMultipleEntriesProperties.graphql

@@ -16,6 +16,9 @@ query multiple_entries_properties($entry_ids: [String!]!){
                 }
                 rcsb_id
             }
+            entity_poly {
+                rcsb_prd_id
+            }
         }
         nonpolymer_entities {
             rcsb_id

package/lib/commonjs/RcsbRequest/RcsbRequestContextManager.d.ts

@@ -5,7 +5,7 @@ import { QueryResult } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchR
 import { InterfaceInstanceTranslate } from "../RcsbUtils/Translators/InterfaceInstanceTranslate";
 import { PolymerEntityChromosomeTranslate } from "../RcsbUtils/Translators/PolymerEntityChromosomeTranslate";
 import { QueryPolymer_Entity_GroupArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
-import { EntryPropertyIntreface } from "../RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector";
+import { EntryPropertyInterface } from "../RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector";
 import { FacetType } from "../RcsbSeacrh/FacetStore/FacetMemberInterface";
 import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
 import { ResultsContentType, SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
@@ -34,7 +34,7 @@ declare class RcsbRequestContextManager {
     private readonly multipleInstanceSequenceCollector;
     readonly modelKey: string;
     getEntityProperties(entityIds: string | Array<string>): Promise<Array<PolymerEntityInterface>>;
-    getEntryProperties(entryIds: string | Array<string>): Promise<Array<EntryPropertyIntreface>>;
+    getEntryProperties(entryIds: string | Array<string>): Promise<Array<EntryPropertyInterface>>;
     getInstanceSequences(instanceIds: string | string[]): Promise<InstanceSequenceInterface[]>;
     getEntityToInstance(entryId: string): Promise<PolymerEntityInstanceTranslate>;
     getEntryToAssembly(entryId: string): Promise<EntryAssemblyTranslate>;

package/lib/commonjs/RcsbSeacrh/FacetStore/FacetMemberInterface.d.ts

@@ -1,6 +1,9 @@
 import { ChartConfigInterface, ChartType } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
-import { AttributeFacetType, FilterFacetType } from "@rcsb/rcsb-search-tools/lib/SearchParseTools/SearchFacetInterface";
+import { AttributeFacetType, BucketDataType, FilterFacetType } from "@rcsb/rcsb-search-tools/lib/SearchParseTools/SearchFacetInterface";
 import { RcsbSearchAttributeType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata";
+import { SearchQueryType } from "@rcsb/rcsb-search-tools/lib/SearchQueryTools/SearchQueryInterfaces";
+import { ChartDataColumnInterface, ChartDataValueInterface } from "@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface";
+import React from "react";
 export type FacetType = AttributeFacetType | FilterFacetType;
 export interface FacetMemberInterface {
     id: string;
@@ -8,9 +11,13 @@ export interface FacetMemberInterface {
     attributeName: string;
     attribute: RcsbSearchAttributeType;
     chartType: ChartType;
-    chartConfig?: ChartConfigInterface & {
-        mergeDomainMaxValue?: number;
-    };
+    chartConfig?: ChartConfigInterface;
+    facetConfig?: FacetConfigInterface;
     facet: FacetType;
     contentType: "date" | "number" | "string";
 }
+export interface FacetConfigInterface {
+    mergeDomainMaxValue?: number;
+    facetTransform?: (d: BucketDataType[]) => BucketDataType[];
+    bucketClickSearchQuery?: (datum: ChartDataValueInterface, data: ChartDataColumnInterface[], e?: React.MouseEvent) => SearchQueryType;
+}

package/lib/commonjs/RcsbSeacrh/FacetStore/SequenceGroupFacetStore.js

@@ -27,7 +27,8 @@ class SequenceGroupFacetStore {
             (0, lodash_1.cloneDeep)(SingleFacets_1.ENTITY_NAME_FACET),
             (0, lodash_1.cloneDeep)(SingleFacets_1.GO_FUNCTION_FACET),
             (0, lodash_1.cloneDeep)(SingleFacets_1.GO_PROCESS_FACET),
-            (0, lodash_1.cloneDeep)(SingleFacets_1.GO_COMPONENT_FACET)
+            (0, lodash_1.cloneDeep)(SingleFacets_1.GO_COMPONENT_FACET),
+            (0, lodash_1.cloneDeep)(SingleFacets_1.CHIMERIC_FACET)
         ];
         this.nonPolymerFacet = [
             (0, lodash_1.cloneDeep)(SingleFacets_1.CHEM_COMP_FACET)

package/lib/commonjs/RcsbSeacrh/FacetStore/SingleFacets.d.ts

@@ -2,6 +2,7 @@ import { FacetMemberInterface } from "./FacetMemberInterface";
 export declare const EXPERIMENTAL_METHOD_FACET: FacetMemberInterface;
 export declare const RESOLUTION_FACET: FacetMemberInterface;
 export declare const METHODOLOGY_FACET: FacetMemberInterface;
+export declare const CHIMERIC_FACET: FacetMemberInterface;
 export declare const RELEASE_DATE_FACET: FacetMemberInterface;
 export declare const SCOP_FACET: FacetMemberInterface;
 export declare const CATH_FACET: FacetMemberInterface;
@@ -36,4 +37,5 @@ export declare const SearchFacets: {
     GO_COMPONENT_FACET: FacetMemberInterface;
     LIGAND_OF_INTEREST_FACET: FacetMemberInterface;
     METHODOLOGY_FACET: FacetMemberInterface;
+    CHIMERIC_FACET: FacetMemberInterface;
 };