@rcsb/rcsb-saguaro-app 6.0.0-development.1 → 6.0.0-development.2

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (817) hide show
  1. package/lib/ExternalResources/NcbiData/NcbiGenomeSequenceData.d.ts +7 -0
  2. package/lib/ExternalResources/NcbiData/NcbiGenomeSequenceData.js +65 -0
  3. package/lib/ExternalResources/NcbiData/NcbiSummary.d.ts +24 -0
  4. package/lib/ExternalResources/NcbiData/NcbiSummary.js +81 -0
  5. package/lib/RcsbAnnotationConfig/AnnotationConfigInterface.d.ts +66 -0
  6. package/lib/RcsbAnnotationConfig/AnnotationConfigInterface.js +1 -0
  7. package/lib/RcsbAnnotationConfig/GroupAnnotationConfig.ac.json +98 -0
  8. package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.ac.json +670 -0
  9. package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.d.ts +31 -0
  10. package/lib/RcsbAnnotationConfig/RcsbAnnotationConfig.js +183 -0
  11. package/lib/RcsbAnnotationConfig/RcsbAnnotationConstants.d.ts +15 -0
  12. package/lib/RcsbAnnotationConfig/RcsbAnnotationConstants.js +17 -0
  13. package/lib/RcsbAnnotationConfig/RcsbDistributionConfig.d.ts +12 -0
  14. package/lib/RcsbAnnotationConfig/RcsbDistributionConfig.dc.json +59 -0
  15. package/lib/RcsbAnnotationConfig/RcsbDistributionConfig.js +31 -0
  16. package/lib/RcsbAnnotationConfig/RcsbResidueConfig.ac.json +685 -0
  17. package/lib/RcsbChartWeb/AbsractChartComponent.d.ts +21 -0
  18. package/lib/RcsbChartWeb/AbsractChartComponent.js +48 -0
  19. package/lib/RcsbChartWeb/BarChartComponent.d.ts +4 -0
  20. package/lib/RcsbChartWeb/BarChartComponent.js +10 -0
  21. package/lib/RcsbChartWeb/HistogramChartComponent.d.ts +5 -0
  22. package/lib/RcsbChartWeb/HistogramChartComponent.js +10 -0
  23. package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.d.ts +17 -0
  24. package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollector.js +104 -0
  25. package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.d.ts +29 -0
  26. package/lib/RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface.js +1 -0
  27. package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.d.ts +16 -0
  28. package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollector.js +83 -0
  29. package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.d.ts +37 -0
  30. package/lib/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.js +1 -0
  31. package/lib/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.d.ts +9 -0
  32. package/lib/RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector.js +31 -0
  33. package/lib/RcsbCollectTools/DataCollectors/DataCollectorInterface.d.ts +7 -0
  34. package/lib/RcsbCollectTools/DataCollectors/DataCollectorInterface.js +1 -0
  35. package/lib/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.d.ts +10 -0
  36. package/lib/RcsbCollectTools/DataCollectors/EntryAssembliesCollector.js +92 -0
  37. package/lib/RcsbCollectTools/DataCollectors/GroupMemberCollector.d.ts +6 -0
  38. package/lib/RcsbCollectTools/DataCollectors/GroupMemberCollector.js +21 -0
  39. package/lib/RcsbCollectTools/DataCollectors/GroupPropertyCollector.d.ts +10 -0
  40. package/lib/RcsbCollectTools/DataCollectors/GroupPropertyCollector.js +26 -0
  41. package/lib/RcsbCollectTools/DataCollectors/InterfaceInstanceCollector.d.ts +12 -0
  42. package/lib/RcsbCollectTools/DataCollectors/InterfaceInstanceCollector.js +41 -0
  43. package/lib/RcsbCollectTools/DataCollectors/MultipleEntityInstancesCollector.d.ts +8 -0
  44. package/lib/RcsbCollectTools/DataCollectors/MultipleEntityInstancesCollector.js +32 -0
  45. package/lib/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.d.ts +19 -0
  46. package/lib/RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector.js +28 -0
  47. package/lib/RcsbCollectTools/DataCollectors/MultipleInstanceSequencesCollector.d.ts +11 -0
  48. package/lib/RcsbCollectTools/DataCollectors/MultipleInstanceSequencesCollector.js +22 -0
  49. package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.d.ts +12 -0
  50. package/lib/RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector.js +26 -0
  51. package/lib/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.d.ts +5 -0
  52. package/lib/RcsbCollectTools/DataCollectors/PolymerEntityChromosomeCollector.js +39 -0
  53. package/lib/RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector.d.ts +24 -0
  54. package/lib/RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector.js +67 -0
  55. package/lib/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.d.ts +23 -0
  56. package/lib/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.js +1 -0
  57. package/lib/RcsbCollectTools/FeatureTools/FeatureTools.d.ts +9 -0
  58. package/lib/RcsbCollectTools/FeatureTools/FeatureTools.js +85 -0
  59. package/lib/RcsbExport/FeatureType.d.ts +10 -0
  60. package/lib/RcsbExport/FeatureType.js +9 -0
  61. package/lib/RcsbExport/RcsbFvUI.d.ts +7 -0
  62. package/lib/RcsbExport/RcsbFvUI.js +12 -0
  63. package/lib/RcsbFvExamples/ChromosomeFv.d.ts +1 -0
  64. package/lib/RcsbFvExamples/ChromosomeFv.js +4 -0
  65. package/lib/RcsbFvExamples/EntitySummaryFv.d.ts +1 -0
  66. package/lib/RcsbFvExamples/EntitySummaryFv.js +4 -0
  67. package/lib/RcsbFvExamples/ExternalDataProvider.d.ts +1 -0
  68. package/lib/RcsbFvExamples/ExternalDataProvider.js +951 -0
  69. package/lib/RcsbFvExamples/GroupHistogram.d.ts +1 -0
  70. package/lib/RcsbFvExamples/GroupHistogram.js +13 -0
  71. package/lib/RcsbFvExamples/InstanceFv.d.ts +1 -0
  72. package/lib/RcsbFvExamples/InstanceFv.js +20 -0
  73. package/lib/RcsbFvExamples/InstanceSequenceFv.d.ts +1 -0
  74. package/lib/RcsbFvExamples/InstanceSequenceFv.js +67 -0
  75. package/lib/RcsbFvExamples/ResidueDistribution.d.ts +1 -0
  76. package/lib/RcsbFvExamples/ResidueDistribution.js +5 -0
  77. package/lib/RcsbFvExamples/SequenceIdentityGroupAlignmentFv.d.ts +1 -0
  78. package/lib/RcsbFvExamples/SequenceIdentityGroupAlignmentFv.js +60 -0
  79. package/lib/RcsbFvExamples/SequenceIdentityGroupFv.d.ts +1 -0
  80. package/lib/RcsbFvExamples/SequenceIdentityGroupFv.js +41 -0
  81. package/lib/RcsbFvExamples/SingleEntitySummaryFv.d.ts +1 -0
  82. package/lib/RcsbFvExamples/SingleEntitySummaryFv.js +2 -0
  83. package/lib/RcsbFvExamples/TestCollectors.d.ts +1 -0
  84. package/lib/RcsbFvExamples/TestCollectors.js +112 -0
  85. package/lib/RcsbFvExamples/UniprotAlignmentFv.d.ts +1 -0
  86. package/lib/RcsbFvExamples/UniprotAlignmentFv.js +2 -0
  87. package/lib/RcsbFvExamples/UniprotEntityInstanceFv.d.ts +1 -0
  88. package/lib/RcsbFvExamples/UniprotEntityInstanceFv.js +42 -0
  89. package/lib/RcsbFvExamples/UniprotFv.d.ts +1 -0
  90. package/lib/RcsbFvExamples/UniprotFv.js +10 -0
  91. package/lib/RcsbFvExamples/UniprotGroupFv.d.ts +1 -0
  92. package/lib/RcsbFvExamples/UniprotGroupFv.js +70 -0
  93. package/lib/RcsbFvUI/AbstractMenuItemComponent.d.ts +11 -0
  94. package/lib/RcsbFvUI/AbstractMenuItemComponent.js +6 -0
  95. package/lib/RcsbFvUI/Components/FilterItemComponent.d.ts +17 -0
  96. package/lib/RcsbFvUI/Components/FilterItemComponent.js +16 -0
  97. package/lib/RcsbFvUI/Components/ItemComponent.d.ts +4 -0
  98. package/lib/RcsbFvUI/Components/ItemComponent.js +7 -0
  99. package/lib/RcsbFvUI/Components/PaginationItemComponent.d.ts +23 -0
  100. package/lib/RcsbFvUI/Components/PaginationItemComponent.js +81 -0
  101. package/lib/RcsbFvUI/GroupPfvUI.d.ts +10 -0
  102. package/lib/RcsbFvUI/GroupPfvUI.js +25 -0
  103. package/lib/RcsbFvUI/Helper/ActionMethods.d.ts +11 -0
  104. package/lib/RcsbFvUI/Helper/ActionMethods.js +29 -0
  105. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvAssemblyBuilder.d.ts +5 -0
  106. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvAssemblyBuilder.js +40 -0
  107. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.d.ts +7 -0
  108. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvChromosomeBuilder.js +93 -0
  109. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvContextManager.d.ts +14 -0
  110. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvContextManager.js +48 -0
  111. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvCoreBuilder.d.ts +35 -0
  112. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvCoreBuilder.js +91 -0
  113. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvDataProviderBuilder.d.ts +4 -0
  114. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvDataProviderBuilder.js +27 -0
  115. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.d.ts +7 -0
  116. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvEntityBuilder.js +88 -0
  117. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.d.ts +8 -0
  118. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.js +84 -0
  119. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupBuilder.d.ts +6 -0
  120. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupBuilder.js +53 -0
  121. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.d.ts +25 -0
  122. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.js +110 -0
  123. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvPairwiseAligmentBuilder.d.ts +5 -0
  124. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvPairwiseAligmentBuilder.js +28 -0
  125. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.d.ts +12 -0
  126. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvProteinSequenceBuilder.js +42 -0
  127. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.d.ts +17 -0
  128. package/lib/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.js +159 -0
  129. package/lib/RcsbFvWeb/RcsbFvBuilder.d.ts +30 -0
  130. package/lib/RcsbFvWeb/RcsbFvBuilder.js +78 -0
  131. package/lib/RcsbFvWeb/RcsbFvComponents/ComponentsManager.d.ts +23 -0
  132. package/lib/RcsbFvWeb/RcsbFvComponents/ComponentsManager.js +63 -0
  133. package/lib/RcsbFvWeb/RcsbFvComponents/LoaderSpinner.d.ts +4 -0
  134. package/lib/RcsbFvWeb/RcsbFvComponents/LoaderSpinner.js +8 -0
  135. package/lib/RcsbFvWeb/RcsbFvComponents/MountableComponent.d.ts +8 -0
  136. package/lib/RcsbFvWeb/RcsbFvComponents/MountableComponent.js +14 -0
  137. package/lib/RcsbFvWeb/RcsbFvComponents/RcsbTabs.d.ts +19 -0
  138. package/lib/RcsbFvWeb/RcsbFvComponents/RcsbTabs.js +20 -0
  139. package/lib/RcsbFvWeb/RcsbFvComponents/SelectButton.d.ts +54 -0
  140. package/lib/RcsbFvWeb/RcsbFvComponents/SelectButton.js +116 -0
  141. package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonManager.d.ts +17 -0
  142. package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonManager.js +54 -0
  143. package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonTitle.d.ts +6 -0
  144. package/lib/RcsbFvWeb/RcsbFvComponents/SelectButtonTitle.js +7 -0
  145. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.d.ts +11 -0
  146. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.js +23 -0
  147. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.d.ts +15 -0
  148. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.js +19 -0
  149. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockFactoryInterface.d.ts +7 -0
  150. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockFactoryInterface.js +1 -0
  151. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.d.ts +21 -0
  152. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationBlockManager.js +98 -0
  153. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.d.ts +11 -0
  154. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/AnnotationTrackManager.js +241 -0
  155. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/BlockManagerInterface.d.ts +5 -0
  156. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/BlockManagerInterface.js +1 -0
  157. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.d.ts +28 -0
  158. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface.js +1 -0
  159. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/RcsbFvTrackDataAnnotationInterface.d.ts +35 -0
  160. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/RcsbFvTrackDataAnnotationInterface.js +1 -0
  161. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.d.ts +19 -0
  162. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.js +128 -0
  163. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AnnotationsTrackFactory.d.ts +9 -0
  164. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AnnotationsTrackFactory.js +145 -0
  165. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.d.ts +9 -0
  166. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/Helper/TrackUtils.js +36 -0
  167. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.d.ts +12 -0
  168. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/MsaAlignmentTrackFactory.js +24 -0
  169. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.d.ts +23 -0
  170. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainAlignmentTrackFactory.js +128 -0
  171. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.d.ts +17 -0
  172. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PlainObservedAlignmentTrackFactory.js +110 -0
  173. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.d.ts +17 -0
  174. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/PositionalScoreAlignmentTrackFactory.js +114 -0
  175. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.d.ts +21 -0
  176. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.js +76 -0
  177. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryInterface.d.ts +4 -0
  178. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryInterface.js +1 -0
  179. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.d.ts +13 -0
  180. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.js +34 -0
  181. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.d.ts +8 -0
  182. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AnnotationsTrackTitleFactory.js +34 -0
  183. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.d.ts +13 -0
  184. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ExperimentalAlignmentTrackTitleFactory.js +77 -0
  185. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/InstanceSequenceTrackTitleFactory.d.ts +11 -0
  186. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/InstanceSequenceTrackTitleFactory.js +22 -0
  187. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.d.ts +12 -0
  188. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/ModelAlignmentTrackTitleFactory.js +27 -0
  189. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.d.ts +12 -0
  190. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.js +67 -0
  191. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryInterface.d.ts +6 -0
  192. package/lib/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryInterface.js +1 -0
  193. package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.d.ts +28 -0
  194. package/lib/RcsbFvWeb/RcsbFvGroup/GroupPfvTabs.js +109 -0
  195. package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.d.ts +10 -0
  196. package/lib/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.js +131 -0
  197. package/lib/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.d.ts +6 -0
  198. package/lib/RcsbFvWeb/RcsbFvGroup/RcsbFvGroupTabsBuilder.js +12 -0
  199. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts +47 -0
  200. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.js +143 -0
  201. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.d.ts +49 -0
  202. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.js +738 -0
  203. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvDataProvider.d.ts +5 -0
  204. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvDataProvider.js +25 -0
  205. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.d.ts +6 -0
  206. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.js +56 -0
  207. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.d.ts +7 -0
  208. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.js +101 -0
  209. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAnnotation.d.ts +7 -0
  210. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAnnotation.js +52 -0
  211. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.d.ts +5 -0
  212. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.js +52 -0
  213. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.d.ts +12 -0
  214. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.js +123 -0
  215. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface.d.ts +95 -0
  216. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface.js +1 -0
  217. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvPairwiseAlignment.d.ts +5 -0
  218. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvPairwiseAlignment.js +21 -0
  219. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvProteinSequence.d.ts +5 -0
  220. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvProteinSequence.js +50 -0
  221. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprot.d.ts +5 -0
  222. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprot.js +69 -0
  223. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotAlignment.d.ts +5 -0
  224. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotAlignment.js +71 -0
  225. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotEntity.d.ts +6 -0
  226. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotEntity.js +63 -0
  227. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotInstance.d.ts +5 -0
  228. package/lib/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotInstance.js +63 -0
  229. package/lib/RcsbFvWeb/RcsbFvTooltip/RcsbFvTooltip.d.ts +8 -0
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@@ -0,0 +1,563 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ exports.SearchFacets = exports.GO_COMPONENT_FACET = exports.GO_PROCESS_FACET = exports.GO_FUNCTION_FACET = exports.ENZYME_CLASS_FACET = exports.CHEM_COMP_FACET = exports.ENTITY_NAME_FACET = exports.PFAM_FACET = exports.TAXONOMY_FACET = exports.ORGANISM_FACET = exports.LIGAND_OF_INTEREST_FACET = exports.LIGAND_FACET = exports.ECOD_FACET = exports.CATH_FACET = exports.SCOP_FACET = exports.RELEASE_DATE_FACET = exports.METHODOLOGY_FACET = exports.RESOLUTION_FACET = exports.EXPERIMENTAL_METHOD_FACET = void 0;
4
+ const SearchMetadata_1 = require("@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata");
5
+ const SearchEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums");
6
+ const ChartConfigInterface_1 = require("@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface");
7
+ exports.EXPERIMENTAL_METHOD_FACET = {
8
+ id: "method",
9
+ title: "Experimental Method",
10
+ attributeName: "EXPERIMENTAL_METHOD_FACET",
11
+ attribute: SearchMetadata_1.RcsbSearchMetadata.Exptl.Method.path,
12
+ chartType: ChartConfigInterface_1.ChartType.barplot,
13
+ contentType: "string",
14
+ chartConfig: {
15
+ mostPopulatedGroups: 3
16
+ },
17
+ facet: {
18
+ name: "EXPERIMENTAL_METHOD_FACET",
19
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
20
+ attribute: SearchMetadata_1.RcsbSearchMetadata.Exptl.Method.path,
21
+ min_interval_population: 1
22
+ }
23
+ };
24
+ exports.RESOLUTION_FACET = {
25
+ id: "resolution",
26
+ title: "Resolution",
27
+ attributeName: "RESOLUTION_FACET",
28
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbEntryInfo.ResolutionCombined.path,
29
+ contentType: "number",
30
+ chartType: ChartConfigInterface_1.ChartType.histogram,
31
+ chartConfig: {
32
+ tickIncrement: {
33
+ origin: 0.5,
34
+ increment: 0.5
35
+ },
36
+ tickFormat: {
37
+ domAxis: (t) => {
38
+ if (parseInt(t.toString()) == 5)
39
+ return `> ${t}`;
40
+ if (parseInt(t.toString()) > 5)
41
+ return '';
42
+ return t.toString();
43
+ }
44
+ },
45
+ chartDisplayConfig: {
46
+ constHeight: 225
47
+ },
48
+ histogramBinIncrement: 0.5,
49
+ mergeDomainMaxValue: 5,
50
+ domainMinValue: 0,
51
+ domainMaxValue: 6,
52
+ axisLabel: "Angstroms",
53
+ tooltipText: (d) => {
54
+ if (d.x > 5)
55
+ return "> 5";
56
+ return `Resolution ${d.x - 0.25} - ${d.x + 0.25}`;
57
+ }
58
+ },
59
+ facet: {
60
+ name: "RESOLUTION_FACET",
61
+ aggregation_type: SearchEnums_1.AggregationType.Histogram,
62
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbEntryInfo.ResolutionCombined.path,
63
+ interval: 0.5,
64
+ min_interval_population: 1,
65
+ }
66
+ };
67
+ exports.METHODOLOGY_FACET = {
68
+ id: "computed",
69
+ title: "Determination Methodology",
70
+ attributeName: "METHODOLOGY_FACET",
71
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbEntryInfo.StructureDeterminationMethodology.path,
72
+ chartType: ChartConfigInterface_1.ChartType.barplot,
73
+ contentType: "string",
74
+ chartConfig: {
75
+ mostPopulatedGroups: 3
76
+ },
77
+ facet: {
78
+ name: "METHODOLOGY_FACET",
79
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
80
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbEntryInfo.StructureDeterminationMethodology.path,
81
+ min_interval_population: 1
82
+ }
83
+ };
84
+ exports.RELEASE_DATE_FACET = {
85
+ id: "release_date",
86
+ title: undefined,
87
+ attributeName: "RELEASE_DATE_FACET",
88
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbAccessionInfo.InitialReleaseDate.path,
89
+ contentType: "date",
90
+ chartType: ChartConfigInterface_1.ChartType.histogram,
91
+ chartConfig: {
92
+ tickIncrement: {
93
+ origin: 1980,
94
+ increment: 10
95
+ },
96
+ tickFormat: {
97
+ domAxis: (t) => {
98
+ return t.toString().replace(",", "");
99
+ }
100
+ },
101
+ histogramBinIncrement: 1,
102
+ domainMinValue: 1970,
103
+ domainMaxValue: new Date().getFullYear() + 2,
104
+ axisLabel: "Year",
105
+ chartDisplayConfig: {
106
+ constHeight: 225
107
+ },
108
+ tooltipText: (d) => {
109
+ return `Release ${d.x - 0.5} - ${d.x + 0.5}`;
110
+ }
111
+ },
112
+ facet: {
113
+ name: "RELEASE_DATE_FACET",
114
+ aggregation_type: SearchEnums_1.AggregationType.DateHistogram,
115
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbAccessionInfo.InitialReleaseDate.path,
116
+ interval: "year",
117
+ min_interval_population: 1
118
+ }
119
+ };
120
+ exports.SCOP_FACET = {
121
+ id: "scop_class",
122
+ title: "SCOP/SCOPe Domain",
123
+ attributeName: "SCOP_FACET",
124
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Name.path,
125
+ contentType: "string",
126
+ chartType: ChartConfigInterface_1.ChartType.barplot,
127
+ chartConfig: {
128
+ mostPopulatedGroups: 10
129
+ },
130
+ facet: {
131
+ filter: {
132
+ type: SearchEnums_1.Type.Terminal,
133
+ service: SearchEnums_1.Service.Text,
134
+ parameters: {
135
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.Type.operator.ExactMatch,
136
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.Type.path,
137
+ value: 'SCOP'
138
+ }
139
+ },
140
+ facets: [{
141
+ filter: {
142
+ type: SearchEnums_1.Type.Terminal,
143
+ service: SearchEnums_1.Service.Text,
144
+ parameters: {
145
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Depth.operator.Equals,
146
+ value: 5,
147
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Depth.path
148
+ }
149
+ },
150
+ facets: [{
151
+ name: "SCOP_FACET",
152
+ min_interval_population: 1,
153
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Name.path,
154
+ aggregation_type: SearchEnums_1.AggregationType.Terms
155
+ }]
156
+ }]
157
+ }
158
+ };
159
+ exports.CATH_FACET = {
160
+ id: "cath_class",
161
+ title: "CATH Domain",
162
+ attributeName: "CATH_FACET",
163
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Name.path,
164
+ contentType: "string",
165
+ chartType: ChartConfigInterface_1.ChartType.barplot,
166
+ chartConfig: {
167
+ mostPopulatedGroups: 10
168
+ },
169
+ facet: {
170
+ filter: {
171
+ type: SearchEnums_1.Type.Terminal,
172
+ service: SearchEnums_1.Service.Text,
173
+ parameters: {
174
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.Type.operator.ExactMatch,
175
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.Type.path,
176
+ value: 'CATH'
177
+ }
178
+ },
179
+ facets: [{
180
+ filter: {
181
+ type: SearchEnums_1.Type.Terminal,
182
+ service: SearchEnums_1.Service.Text,
183
+ parameters: {
184
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Depth.operator.Equals,
185
+ value: 4,
186
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Depth.path
187
+ }
188
+ },
189
+ facets: [{
190
+ name: "CATH_FACET",
191
+ min_interval_population: 1,
192
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Name.path,
193
+ aggregation_type: SearchEnums_1.AggregationType.Terms
194
+ }]
195
+ }]
196
+ }
197
+ };
198
+ exports.ECOD_FACET = {
199
+ id: "ecod_class",
200
+ title: "ECOD Domain",
201
+ attributeName: "ECOD_FACET",
202
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Name.path,
203
+ contentType: "string",
204
+ chartType: ChartConfigInterface_1.ChartType.barplot,
205
+ chartConfig: {
206
+ mostPopulatedGroups: 10
207
+ },
208
+ facet: {
209
+ filter: {
210
+ type: SearchEnums_1.Type.Terminal,
211
+ service: SearchEnums_1.Service.Text,
212
+ parameters: {
213
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.Type.operator.ExactMatch,
214
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.Type.path,
215
+ value: 'ECOD'
216
+ }
217
+ },
218
+ facets: [{
219
+ filter: {
220
+ type: SearchEnums_1.Type.Terminal,
221
+ service: SearchEnums_1.Service.Text,
222
+ parameters: {
223
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Depth.operator.Equals,
224
+ value: 4,
225
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Depth.path
226
+ }
227
+ },
228
+ facets: [{
229
+ name: "ECOD_FACET",
230
+ min_interval_population: 1,
231
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Name.path,
232
+ aggregation_type: SearchEnums_1.AggregationType.Terms
233
+ }]
234
+ }]
235
+ }
236
+ };
237
+ exports.LIGAND_FACET = {
238
+ id: "ligands",
239
+ title: "Small Molecules",
240
+ attributeName: "LIGAND_FACET",
241
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbNonpolymerEntityInstanceContainerIdentifiers.CompId.path,
242
+ contentType: "string",
243
+ chartType: ChartConfigInterface_1.ChartType.barplot,
244
+ chartConfig: {
245
+ mostPopulatedGroups: 20
246
+ },
247
+ facet: {
248
+ name: "LIGAND_FACET",
249
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
250
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbNonpolymerEntityInstanceContainerIdentifiers.CompId.path,
251
+ min_interval_population: 1
252
+ }
253
+ };
254
+ exports.LIGAND_OF_INTEREST_FACET = {
255
+ id: "ligands",
256
+ title: "Ligands of Interest",
257
+ attributeName: "LIGAND_OF_INTEREST_FACET",
258
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbNonpolymerEntityInstanceContainerIdentifiers.CompId.path,
259
+ contentType: "string",
260
+ chartType: ChartConfigInterface_1.ChartType.barplot,
261
+ chartConfig: {
262
+ mostPopulatedGroups: 20
263
+ },
264
+ facet: {
265
+ filter: {
266
+ type: SearchEnums_1.Type.Terminal,
267
+ service: SearchEnums_1.Service.Text,
268
+ parameters: {
269
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbNonpolymerEntityAnnotation.Type.path,
270
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbNonpolymerEntityAnnotation.Type.operator.ExactMatch,
271
+ value: "SUBJECT_OF_INVESTIGATION"
272
+ }
273
+ },
274
+ facets: [{
275
+ name: "LIGAND_OF_INTEREST_FACET",
276
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
277
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbNonpolymerEntityAnnotation.CompId.path,
278
+ min_interval_population: 1
279
+ }]
280
+ }
281
+ };
282
+ exports.ORGANISM_FACET = {
283
+ id: "organism",
284
+ title: "Organism",
285
+ attributeName: "ORGANISM_FACET",
286
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbEntitySourceOrganism.NcbiScientificName.path,
287
+ contentType: "string",
288
+ chartType: ChartConfigInterface_1.ChartType.barplot,
289
+ chartConfig: {
290
+ mostPopulatedGroups: 9
291
+ },
292
+ facet: {
293
+ name: "ORGANISM_FACET",
294
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
295
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbEntitySourceOrganism.NcbiScientificName.path,
296
+ min_interval_population: 1
297
+ }
298
+ };
299
+ exports.TAXONOMY_FACET = {
300
+ id: "taxonomy",
301
+ title: "Taxonomy",
302
+ attributeName: "TAXONOMY_FACET",
303
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbEntitySourceOrganism.NcbiParentScientificName.path,
304
+ contentType: "string",
305
+ chartType: ChartConfigInterface_1.ChartType.barplot,
306
+ chartConfig: {
307
+ mostPopulatedGroups: 5
308
+ },
309
+ facet: {
310
+ name: "TAXONOMY_FACET",
311
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
312
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbEntitySourceOrganism.NcbiParentScientificName.path,
313
+ min_interval_population: 1
314
+ }
315
+ };
316
+ exports.PFAM_FACET = {
317
+ id: "Pfam",
318
+ title: "PFAM Domain",
319
+ attributeName: "PFAM_FACET",
320
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Name.path,
321
+ contentType: "string",
322
+ chartType: ChartConfigInterface_1.ChartType.barplot,
323
+ chartConfig: {
324
+ mostPopulatedGroups: 10
325
+ },
326
+ facet: {
327
+ filter: {
328
+ type: SearchEnums_1.Type.Terminal,
329
+ service: SearchEnums_1.Service.Text,
330
+ parameters: {
331
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Type.operator.ExactMatch,
332
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Type.path,
333
+ value: 'Pfam'
334
+ }
335
+ },
336
+ facets: [{
337
+ name: "PFAM_FACET",
338
+ min_interval_population: 1,
339
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Name.path,
340
+ aggregation_type: SearchEnums_1.AggregationType.Terms
341
+ }]
342
+ }
343
+ };
344
+ exports.ENTITY_NAME_FACET = {
345
+ id: "entiy_names",
346
+ title: undefined,
347
+ attributeName: "ENTITY_NAME_FACET",
348
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntity.RcsbPolymerNameCombined.Names.path,
349
+ contentType: "string",
350
+ chartType: ChartConfigInterface_1.ChartType.barplot,
351
+ chartConfig: {
352
+ mostPopulatedGroups: 5
353
+ },
354
+ facet: {
355
+ name: "ENTITY_NAME_FACET",
356
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
357
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntity.RcsbPolymerNameCombined.Names.path,
358
+ min_interval_population: 1
359
+ }
360
+ };
361
+ exports.CHEM_COMP_FACET = {
362
+ id: "chemp_comp",
363
+ title: "Chemical Component",
364
+ attributeName: "CHEM_COMP_FACET",
365
+ attribute: SearchMetadata_1.RcsbSearchMetadata.ChemComp.Type.path,
366
+ contentType: "string",
367
+ chartType: ChartConfigInterface_1.ChartType.barplot,
368
+ chartConfig: {
369
+ mostPopulatedGroups: 5
370
+ },
371
+ facet: {
372
+ name: "CHEM_COMP_FACET",
373
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
374
+ attribute: SearchMetadata_1.RcsbSearchMetadata.ChemComp.Type.path,
375
+ min_interval_population: 1
376
+ }
377
+ };
378
+ exports.ENZYME_CLASS_FACET = {
379
+ id: "enzyme_class",
380
+ title: "Enzyme Classification",
381
+ attributeName: "ENZYME_CLASS_FACET",
382
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntity.RcsbEcLineage.Name.path,
383
+ contentType: "string",
384
+ chartType: ChartConfigInterface_1.ChartType.barplot,
385
+ chartConfig: {
386
+ mostPopulatedGroups: 10
387
+ },
388
+ facet: {
389
+ filter: {
390
+ type: SearchEnums_1.Type.Terminal,
391
+ service: SearchEnums_1.Service.Text,
392
+ parameters: {
393
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntity.RcsbEcLineage.Depth.operator.GreaterOrEqual,
394
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntity.RcsbEcLineage.Depth.path,
395
+ value: 3
396
+ }
397
+ },
398
+ facets: [{
399
+ name: "ENZYME_CLASS_FACET",
400
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
401
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntity.RcsbEcLineage.Name.path,
402
+ min_interval_population: 1
403
+ }]
404
+ }
405
+ };
406
+ exports.GO_FUNCTION_FACET = {
407
+ id: "go_function_class",
408
+ title: "GO Molecular Function",
409
+ attributeName: "GO_FUNCTION_FACET",
410
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Name.path,
411
+ contentType: "string",
412
+ chartType: ChartConfigInterface_1.ChartType.barplot,
413
+ chartConfig: {
414
+ mostPopulatedGroups: 10
415
+ },
416
+ facet: {
417
+ filter: {
418
+ type: SearchEnums_1.Type.Terminal,
419
+ service: SearchEnums_1.Service.Text,
420
+ parameters: {
421
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Type.operator.ExactMatch,
422
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Type.path,
423
+ value: "GO"
424
+ }
425
+ },
426
+ facets: [{
427
+ name: "GO_FUNCTION_FACET",
428
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
429
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Name.path,
430
+ max_num_intervals: 1000,
431
+ min_interval_population: 1,
432
+ facets: [{
433
+ filter: {
434
+ type: SearchEnums_1.Type.Terminal,
435
+ service: SearchEnums_1.Service.Text,
436
+ parameters: {
437
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Type.operator.ExactMatch,
438
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.AnnotationLineage.Name.path,
439
+ value: "molecular_function"
440
+ }
441
+ },
442
+ facets: [{
443
+ name: `GO_FUNCTION_FACET/${SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.AnnotationLineage.Name.path}`,
444
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
445
+ min_interval_population: 1,
446
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.AnnotationLineage.Name.path
447
+ }]
448
+ }]
449
+ }]
450
+ }
451
+ };
452
+ exports.GO_PROCESS_FACET = {
453
+ id: "go_process_class",
454
+ title: "GO Biological Process",
455
+ attributeName: "GO_PROCESS_FACET",
456
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Name.path,
457
+ contentType: "string",
458
+ chartType: ChartConfigInterface_1.ChartType.barplot,
459
+ chartConfig: {
460
+ mostPopulatedGroups: 10
461
+ },
462
+ facet: {
463
+ filter: {
464
+ type: SearchEnums_1.Type.Terminal,
465
+ service: SearchEnums_1.Service.Text,
466
+ parameters: {
467
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Type.operator.ExactMatch,
468
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Type.path,
469
+ value: "GO"
470
+ }
471
+ },
472
+ facets: [{
473
+ name: "GO_PROCESS_FACET",
474
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
475
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Name.path,
476
+ max_num_intervals: 1000,
477
+ min_interval_population: 1,
478
+ facets: [{
479
+ filter: {
480
+ type: SearchEnums_1.Type.Terminal,
481
+ service: SearchEnums_1.Service.Text,
482
+ parameters: {
483
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Type.operator.ExactMatch,
484
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.AnnotationLineage.Name.path,
485
+ value: "biological_process"
486
+ }
487
+ },
488
+ facets: [{
489
+ name: `GO_PROCESS_FACET/${SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.AnnotationLineage.Name.path}`,
490
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
491
+ min_interval_population: 1,
492
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.AnnotationLineage.Name.path
493
+ }]
494
+ }]
495
+ }]
496
+ }
497
+ };
498
+ exports.GO_COMPONENT_FACET = {
499
+ id: "go_component_class",
500
+ title: "GO Cellular Component",
501
+ attributeName: "GO_COMPONENT_FACET",
502
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Name.path,
503
+ contentType: "string",
504
+ chartType: ChartConfigInterface_1.ChartType.barplot,
505
+ chartConfig: {
506
+ mostPopulatedGroups: 10
507
+ },
508
+ facet: {
509
+ filter: {
510
+ type: SearchEnums_1.Type.Terminal,
511
+ service: SearchEnums_1.Service.Text,
512
+ parameters: {
513
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Type.operator.ExactMatch,
514
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Type.path,
515
+ value: "GO"
516
+ }
517
+ },
518
+ facets: [{
519
+ name: "GO_COMPONENT_FACET",
520
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
521
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Name.path,
522
+ max_num_intervals: 1000,
523
+ min_interval_population: 1,
524
+ facets: [{
525
+ filter: {
526
+ type: SearchEnums_1.Type.Terminal,
527
+ service: SearchEnums_1.Service.Text,
528
+ parameters: {
529
+ operator: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Type.operator.ExactMatch,
530
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.AnnotationLineage.Name.path,
531
+ value: "cellular_component"
532
+ }
533
+ },
534
+ facets: [{
535
+ name: `GO_COMPONENT_FACET/${SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.AnnotationLineage.Name.path}`,
536
+ aggregation_type: SearchEnums_1.AggregationType.Terms,
537
+ min_interval_population: 1,
538
+ attribute: SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.AnnotationLineage.Name.path
539
+ }]
540
+ }]
541
+ }]
542
+ }
543
+ };
544
+ exports.SearchFacets = {
545
+ EXPERIMENTAL_METHOD_FACET: exports.EXPERIMENTAL_METHOD_FACET,
546
+ RESOLUTION_FACET: exports.RESOLUTION_FACET,
547
+ RELEASE_DATE_FACET: exports.RELEASE_DATE_FACET,
548
+ SCOP_FACET: exports.SCOP_FACET,
549
+ LIGAND_FACET: exports.LIGAND_FACET,
550
+ ORGANISM_FACET: exports.ORGANISM_FACET,
551
+ TAXONOMY_FACET: exports.TAXONOMY_FACET,
552
+ PFAM_FACET: exports.PFAM_FACET,
553
+ ENTITY_NAME_FACET: exports.ENTITY_NAME_FACET,
554
+ CHEM_COMP_FACET: exports.CHEM_COMP_FACET,
555
+ ECOD_FACET: exports.ECOD_FACET,
556
+ CATH_FACET: exports.CATH_FACET,
557
+ ENZYME_CLASS_FACET: exports.ENZYME_CLASS_FACET,
558
+ GO_FUNCTION_FACET: exports.GO_FUNCTION_FACET,
559
+ GO_PROCESS_FACET: exports.GO_PROCESS_FACET,
560
+ GO_COMPONENT_FACET: exports.GO_COMPONENT_FACET,
561
+ LIGAND_OF_INTEREST_FACET: exports.LIGAND_OF_INTEREST_FACET,
562
+ METHODOLOGY_FACET: exports.METHODOLOGY_FACET
563
+ };
@@ -0,0 +1,15 @@
1
+ import { ReturnType, Service } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
2
+ import { FacetMemberInterface } from "./FacetMemberInterface";
3
+ import { FacetStoreInterface } from "./FacetStoreInterface";
4
+ declare class UniprotGroupFacetStore implements FacetStoreInterface {
5
+ private readonly entryFacet;
6
+ private readonly instanceFacet;
7
+ private readonly entityFacet;
8
+ private readonly nonPolymerFacet;
9
+ getServices(): (Service.Text | Service.TextChem)[];
10
+ getFacetService(service: Service | "all"): FacetMemberInterface[];
11
+ readonly facetLayoutGrid: string[];
12
+ readonly returnType: ReturnType;
13
+ }
14
+ export declare const uniprotGroupFacetStore: UniprotGroupFacetStore;
15
+ export {};
@@ -0,0 +1,60 @@
1
+ "use strict";
2
+ Object.defineProperty(exports, "__esModule", { value: true });
3
+ exports.uniprotGroupFacetStore = void 0;
4
+ const SearchEnums_1 = require("@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums");
5
+ const SearchMetadata_1 = require("@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata");
6
+ const SingleFacets_1 = require("./SingleFacets");
7
+ const lodash_1 = require("lodash");
8
+ class UniprotGroupFacetStore {
9
+ constructor() {
10
+ this.entryFacet = [
11
+ (0, lodash_1.cloneDeep)(SingleFacets_1.EXPERIMENTAL_METHOD_FACET),
12
+ (0, lodash_1.cloneDeep)(SingleFacets_1.RESOLUTION_FACET),
13
+ (0, lodash_1.cloneDeep)(SingleFacets_1.METHODOLOGY_FACET),
14
+ (0, lodash_1.cloneDeep)(SingleFacets_1.RELEASE_DATE_FACET),
15
+ (0, lodash_1.cloneDeep)(SingleFacets_1.ENZYME_CLASS_FACET)
16
+ ];
17
+ this.instanceFacet = [
18
+ (0, lodash_1.cloneDeep)(SingleFacets_1.SCOP_FACET),
19
+ (0, lodash_1.cloneDeep)(SingleFacets_1.CATH_FACET),
20
+ (0, lodash_1.cloneDeep)(SingleFacets_1.ECOD_FACET),
21
+ (0, lodash_1.cloneDeep)(SingleFacets_1.LIGAND_FACET)
22
+ ];
23
+ this.entityFacet = [
24
+ (0, lodash_1.cloneDeep)(SingleFacets_1.ORGANISM_FACET),
25
+ (0, lodash_1.cloneDeep)(SingleFacets_1.TAXONOMY_FACET),
26
+ (0, lodash_1.cloneDeep)(SingleFacets_1.PFAM_FACET),
27
+ (0, lodash_1.cloneDeep)(SingleFacets_1.ENTITY_NAME_FACET),
28
+ (0, lodash_1.cloneDeep)(SingleFacets_1.GO_FUNCTION_FACET),
29
+ (0, lodash_1.cloneDeep)(SingleFacets_1.GO_PROCESS_FACET),
30
+ (0, lodash_1.cloneDeep)(SingleFacets_1.GO_COMPONENT_FACET)
31
+ ];
32
+ this.nonPolymerFacet = [
33
+ (0, lodash_1.cloneDeep)(SingleFacets_1.CHEM_COMP_FACET)
34
+ ];
35
+ this.facetLayoutGrid = [
36
+ SearchMetadata_1.RcsbSearchMetadata.RcsbAccessionInfo.DepositDate.path,
37
+ SearchMetadata_1.RcsbSearchMetadata.RcsbEntryInfo.ResolutionCombined.path, SearchMetadata_1.RcsbSearchMetadata.Exptl.Method.path, SearchMetadata_1.RcsbSearchMetadata.RcsbEntryInfo.StructureDeterminationMethodology.path,
38
+ SearchMetadata_1.RcsbSearchMetadata.ChemComp.Type.path,
39
+ SearchMetadata_1.RcsbSearchMetadata.RcsbEntitySourceOrganism.NcbiScientificName.path, SearchMetadata_1.RcsbSearchMetadata.RcsbEntitySourceOrganism.NcbiParentScientificName.path,
40
+ SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerEntityAnnotation.Name.path, SearchMetadata_1.RcsbSearchMetadata.RcsbPolymerInstanceAnnotation.AnnotationLineage.Name.path
41
+ ];
42
+ this.returnType = SearchEnums_1.ReturnType.PolymerEntity;
43
+ }
44
+ getServices() {
45
+ return [SearchEnums_1.Service.Text];
46
+ }
47
+ getFacetService(service) {
48
+ switch (service) {
49
+ case SearchEnums_1.Service.Text:
50
+ return this.entryFacet.concat(this.instanceFacet).concat(this.entityFacet);
51
+ case SearchEnums_1.Service.TextChem:
52
+ return this.nonPolymerFacet;
53
+ case "all":
54
+ return this.entryFacet.concat(this.instanceFacet).concat(this.entityFacet).concat(this.nonPolymerFacet);
55
+ default:
56
+ return [];
57
+ }
58
+ }
59
+ }
60
+ exports.uniprotGroupFacetStore = new UniprotGroupFacetStore();