@rcsb/rcsb-saguaro-app 5.0.8 → 5.1.0

package/build/dist/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartAdditionalProperties.d.ts

@@ -1,6 +1,6 @@
 import { ChartMapType } from "./GroupChartLayout";
 export interface GroupChartAdditionalProperties {
-    componentMountCallback(chartMap: ChartMapType, layout: string[]): void;
+    componentMountCallback(chartMap?: ChartMapType, layout?: string[]): void;
     layoutConfig: LayoutConfigInterface;
 }
 export interface LayoutConfigInterface {

package/build/dist/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/GroupChartTools.d.ts

@@ -2,5 +2,6 @@ import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnu
 import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { ChartMapType } from "./GroupChartLayout";
 export declare namespace GroupChartMap {
+    type ChartObjectIdType = "included" | "excluded";
     function getChartMap(groupProvenanceId: GroupProvenanceId, groupId: string, searchQuery?: SearchQuery): Promise<ChartMapType>;
 }

package/build/dist/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbGroupChartComponent.d.ts

@@ -11,8 +11,8 @@ interface RcsbGroupChartInterface {
     additionalProperties?: GroupChartAdditionalProperties;
 }
 interface RcsbGroupChartState {
-    layout: string[];
-    chartMap: ChartMapType;
+    layout?: string[];
+    chartMap?: ChartMapType;
 }
 export declare class RcsbGroupChartComponent extends React.Component<RcsbGroupChartInterface, RcsbGroupChartState> {
     componentDidMount(): Promise<void>;

package/build/dist/RcsbGroupWeb/RcsbGroupView/RcsbGroupSeacrhQuery/SearchQueryContextManager.d.ts

@@ -3,8 +3,8 @@ import { ChartMapType } from "../RcsbGroupChart/GroupChartLayout";
 import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
 import { ChartObjectInterface } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
-import { SearchQueryType } from "../../../RcsbSeacrh/SearchRequestProperty";
 import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
+import { SearchQueryType } from "@rcsb/rcsb-search-tools/lib/SearchQueryTools/SearchQueryInterfaces";
 export interface SearchQueryContextManagerSubjectInterface {
     attributeName: string;
     chartMap: ChartMapType;

package/build/dist/RcsbRequest/RcsbRequestContextManager.d.ts

@@ -6,13 +6,13 @@ import { InterfaceInstanceTranslate } from "../RcsbUtils/Translators/InterfaceIn
 import { PolymerEntityChromosomeTranslate } from "../RcsbUtils/Translators/PolymerEntityChromosomeTranslate";
 import { QueryPolymer_Entity_GroupArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
 import { EntryPropertyIntreface } from "../RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector";
-import { SearchQueryType } from "../RcsbSeacrh/SearchRequestProperty";
 import { FacetType } from "../RcsbSeacrh/FacetStore/FacetMemberInterface";
 import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
 import { ResultsContentType, SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { RequestConfig as GraphqlRequestInit } from "graphql-request/src/types";
 import { PolymerEntityInterface } from "../RcsbCollectTools/DataCollectors/MultiplePolymerEntityCollector";
 import { InstanceSequenceInterface } from "../RcsbCollectTools/DataCollectors/MultipleInstanceSequencesCollector";
+import { SearchQueryType } from "@rcsb/rcsb-search-tools/lib/SearchQueryTools/SearchQueryInterfaces";
 declare class RcsbRequestContextManager {
     private readonly polymerEntityToInstanceMap;
     private readonly entryToAssemblyMap;

package/build/dist/RcsbSeacrh/FacetStore/DepositionGroupFacetStore.d.ts

@@ -6,7 +6,7 @@ declare class DepositionGroupFacetStore implements FacetStoreInterface {
     private readonly instanceFacet;
     private readonly entityFacet;
     private readonly nonPolymerFacet;
-    getServices(): Service[];
+    getServices(): (Service.Text | Service.TextChem)[];
     getFacetService(service: Service | "all"): FacetMemberInterface[];
     readonly facetLayoutGrid: string[];
     readonly returnType: ReturnType;

package/build/dist/RcsbSeacrh/FacetStore/EntityGranularitySearchFacetStore.d.ts

@@ -6,7 +6,7 @@ declare class EntityGranularitySearchFacetStore implements FacetStoreInterface {
     private readonly instanceFacet;
     private readonly entityFacet;
     private readonly nonPolymerFacet;
-    getServices(): Service[];
+    getServices(): (Service.Text | Service.TextChem)[];
     getFacetService(service: Service | "all"): FacetMemberInterface[];
     readonly facetLayoutGrid: string[];
     readonly returnType: ReturnType;

package/build/dist/RcsbSeacrh/FacetStore/FacetMemberInterface.d.ts

@@ -1,15 +1,16 @@
-import { CardinalityFacet, DateHistogramFacet, DateRangeFacet, FilterFacet, HistogramFacet, RangeFacet, TermsFacet } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
-import { BucketFacet } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchResultInterface";
 import { ChartConfigInterface, ChartType } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
-export type FacetType = TermsFacet | HistogramFacet | DateHistogramFacet | RangeFacet | DateRangeFacet | CardinalityFacet | FilterFacet;
+import { AttributeFacetType, FilterFacetType } from "@rcsb/rcsb-search-tools/lib/SearchParseTools/SearchFacetInterface";
+import { RcsbSearchAttributeType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata";
+export type FacetType = AttributeFacetType | FilterFacetType;
 export interface FacetMemberInterface {
     id: string;
     title?: string;
     attributeName: string;
-    attribute: string;
+    attribute: RcsbSearchAttributeType;
     chartType: ChartType;
-    chartConfig?: ChartConfigInterface;
+    chartConfig?: ChartConfigInterface & {
+        mergeDomainMaxValue?: number;
+    };
     facet: FacetType;
     contentType: "date" | "number" | "string";
-    transformSearchResultFacets?(facets: BucketFacet): BucketFacet;
 }

package/build/dist/RcsbSeacrh/FacetStore/FacetStoreInterface.d.ts

@@ -1,7 +1,7 @@
 import { FacetMemberInterface } from "./FacetMemberInterface";
 import { ReturnType, Service } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
 export interface FacetStoreInterface {
-    getServices(): Service[];
+    getServices(): (Service.Text | Service.TextChem)[];
     getFacetService(service: Service | "all"): FacetMemberInterface[];
     readonly facetLayoutGrid: string[];
     readonly returnType: ReturnType;

package/build/dist/RcsbSeacrh/FacetStore/SequenceGroupFacetStore.d.ts

@@ -6,7 +6,7 @@ declare class SequenceGroupFacetStore implements FacetStoreInterface {
     private readonly instanceFacet;
     private readonly entityFacet;
     private readonly nonPolymerFacet;
-    getServices(): Service[];
+    getServices(): (Service.Text | Service.TextChem)[];
     getFacetService(service: Service | "all"): FacetMemberInterface[];
     readonly facetLayoutGrid: string[];
     readonly returnType: ReturnType;

package/build/dist/RcsbSeacrh/FacetStore/UniprotGroupFacetStore.d.ts

@@ -6,7 +6,7 @@ declare class UniprotGroupFacetStore implements FacetStoreInterface {
     private readonly instanceFacet;
     private readonly entityFacet;
     private readonly nonPolymerFacet;
-    getServices(): Service[];
+    getServices(): (Service.Text | Service.TextChem)[];
     getFacetService(service: Service | "all"): FacetMemberInterface[];
     readonly facetLayoutGrid: string[];
     readonly returnType: ReturnType;

package/build/dist/RcsbSeacrh/FacetTools.d.ts

@@ -1,52 +1,58 @@
 import { BucketFacet } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchResultInterface";
 import { FacetMemberInterface } from "./FacetStore/FacetMemberInterface";
 import { AttributeTextQueryParameters } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
-import { Operator, Service } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
-import { ChartConfigInterface, ChartDisplayConfigInterface, ChartObjectInterface, ChartType } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
+import { Service } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
+import { ChartDisplayConfigInterface, ChartObjectInterface, ChartType } from "@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface";
+import { RcsbSearchAttributeType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata";
 export type SearchFilter = {
-    attribute: string;
+    attribute: RcsbSearchAttributeType;
     value: AttributeTextQueryParameters['value'];
-    operator: Operator;
+    operator: AttributeTextQueryParameters["operator"];
     service: Service.Text | Service.TextChem;
 };
-export interface RcsbChartInterface {
+export interface RcsbChartInterface<T = any> {
     chartType: ChartType;
     labelList?: string[];
-    attribute: string;
+    attribute: RcsbSearchAttributeType;
     attributeName: string;
-    chartConfig?: ChartConfigInterface;
+    chartConfig?: FacetMemberInterface["chartConfig"];
     title?: string;
-    data: ChartObjectInterface[];
+    data: ChartObjectInterface<T>[];
     filters?: SearchFilter[];
     contentType: FacetMemberInterface['contentType'];
 }
 export declare class FacetTools {
-    static getResultDrilldowns(facetMembers: FacetMemberInterface[], searchResultFacets: Array<BucketFacet>, labelList?: string[], recursiveOut?: Array<RcsbChartInterface>): Array<RcsbChartInterface>;
+    static getResultDrilldowns(facetMembers: FacetMemberInterface[], searchResultFacets: Array<BucketFacet>): Array<RcsbChartInterface>;
     static subtractDrilldowns(partial: Array<RcsbChartInterface>, full: Array<RcsbChartInterface>): Array<RcsbChartInterface>;
     static getFacetFromName(facetMembers: FacetMemberInterface[], name: string): FacetMemberInterface | undefined;
     static addChartDisplayConfig(chart: RcsbChartInterface, chartDisplayConfig: Partial<ChartDisplayConfigInterface>): {
         chartConfig: {
             chartDisplayConfig: Partial<ChartDisplayConfigInterface>;
-            mergeDomainMaxValue?: number | undefined;
             mostPopulatedGroups?: number | undefined;
-            mergeName?: string | undefined;
             domainMinValue?: number | undefined;
+            domainMaxValue?: number | undefined;
+            domainEmptyBins?: boolean | undefined;
             histogramBinIncrement?: number | undefined;
             tickIncrement?: {
                 origin: number;
                 increment: number;
             } | undefined;
+            tickFormat?: {
+                domAxis?: ((x: string | number) => string) | undefined;
+                imgAxis?: ((x: string | number) => string) | undefined;
+            } | undefined;
             axisLabel?: string | undefined;
             barClickCallback?: import("@rcsb/rcsb-charts/lib/RcsbChartComponent/ChartConfigInterface").BarClickCallbackType | undefined;
-            sort?: ((b: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataInterface, a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataInterface) => number) | undefined;
-            tooltipText?: ((a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataValuesInterface) => string | undefined) | undefined;
+            sort?: ((b: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface<any>, a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataColumnInterface<any>) => number) | undefined;
+            tooltipText?: ((a: import("@rcsb/rcsb-charts/lib/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataValueInterface<any>) => string | string[] | undefined) | undefined;
+            mergeDomainMaxValue?: number | undefined;
         };
         chartType: ChartType;
         labelList?: string[] | undefined;
-        attribute: string;
+        attribute: RcsbSearchAttributeType;
         attributeName: string;
         title?: string | undefined;
-        data: ChartObjectInterface[];
+        data: ChartObjectInterface<any>[];
         filters?: SearchFilter[] | undefined;
         contentType: "string" | "number" | "date";
     };

package/build/dist/RcsbSeacrh/SearchQueryTools.d.ts

@@ -1,16 +1,16 @@
-import { SearchQueryType } from "./SearchRequestProperty";
-import { LogicalOperator, Operator, ReturnType, Service } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
-import { SearchQuery, AttributeTextQueryParameters, ResultsContentType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
+import { LogicalOperator, ReturnType, Service } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
+import { RcsbSearchAttributeType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchMetadata";
+import { AttributeTextQueryParameters, ResultsContentType, SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { FacetStoreInterface } from "./FacetStore/FacetStoreInterface";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
+import { SearchQueryType } from "@rcsb/rcsb-search-tools/lib/SearchQueryTools/SearchQueryInterfaces";
 export declare namespace SearchQueryTools {
-    function searchGroupQuery(groupProvenance: GroupProvenanceId, groupId: string, service?: Service): SearchQueryType;
-    function addGroupNodeToSearchQuery(groupProvenanceId: GroupProvenanceId, groupId: string, searchQuery: SearchQueryType, service?: Service): SearchQueryType;
-    function buildAttributeSearchQuery(attribute: string, value: AttributeTextQueryParameters['value'], operator: Operator, searchQuery: SearchQueryType, returnType: ReturnType, service: Service.Text | Service.TextChem, negation?: boolean): SearchQuery;
+    function searchGroupQuery(groupProvenance: GroupProvenanceId, groupId: string, service?: Service.Text | Service.TextChem): SearchQueryType;
+    function addGroupNodeToSearchQuery(groupProvenanceId: GroupProvenanceId, groupId: string, searchQuery: SearchQueryType, service?: Service.Text | Service.TextChem): SearchQueryType;
     function buildNodeSearchQuery(node: SearchQueryType, searchQuery: SearchQueryType, returnType: ReturnType, resultsContentType: ResultsContentType, logicalOperator?: LogicalOperator): SearchQuery;
     function buildSearchQuery(searchQuery: SearchQueryType, returnType: ReturnType): SearchQuery;
-    function addNewNodeToAttributeSearchQuery(attribute: string, value: AttributeTextQueryParameters['value'], operator: Operator, searchQuery: SearchQueryType, service: Service.Text | Service.TextChem, negation?: boolean): SearchQueryType;
-    function searchAttributeQuery(attribute: string, value: AttributeTextQueryParameters['value'], operator: Operator, service: Service.Text | Service.TextChem, negation?: boolean): SearchQueryType;
+    function addNewNodeToAttributeSearchQuery(attribute: RcsbSearchAttributeType, value: AttributeTextQueryParameters['value'], operator: AttributeTextQueryParameters["operator"], searchQuery: SearchQueryType, service: Service.Text | Service.TextChem, negation?: boolean): SearchQueryType;
+    function searchAttributeQuery(attribute: RcsbSearchAttributeType, value: AttributeTextQueryParameters['value'], operator: AttributeTextQueryParameters["operator"], service: Service.Text | Service.TextChem, negation?: boolean): SearchQueryType;
     function addNodeToSearchQuery(node: SearchQueryType, searchQuery: SearchQueryType, logicalOperator?: LogicalOperator): SearchQueryType;
     function getFacetStoreFromGroupProvenance(groupProvenanceId: GroupProvenanceId): FacetStoreInterface;
     function searchContentType(searchQuery?: SearchQuery): ResultsContentType;

package/build/dist/RcsbSeacrh/SearchRequestProperty.d.ts

@@ -1,9 +1,9 @@
 import { SearchRequest } from "@rcsb/rcsb-api-tools/build/RcsbSearch/SearchRequest";
 import { QueryResult } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchResultInterface";
 import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
-import { GroupNode, ResultsContentType, SearchQuery, TerminalNode } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
+import { ResultsContentType, SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { FacetType } from "./FacetStore/FacetMemberInterface";
-export type SearchQueryType = GroupNode | TerminalNode;
+import { SearchQueryType } from "@rcsb/rcsb-search-tools/lib/SearchQueryTools/SearchQueryInterfaces";
 declare class SearchRequestProperty {
     private readonly getClient;
     constructor(getClient: () => SearchRequest);