@rcsb/rcsb-saguaro-app 5.0.4 → 5.0.5-development.2

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts

@@ -40,5 +40,7 @@ export declare abstract class RcsbFvAbstractModule implements RcsbFvModuleInterf
         sequenceTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, string]>;
     }): Promise<void>;
     protected buildAnnotationsTrack(annotationsRequestContext: AnnotationRequestContext, annotationsFeatures: AnnotationFeatures[], annotationConfigMap?: AnnotationConfigInterface): Promise<void>;
+    protected getBoardConfig(): Promise<RcsbFvBoardConfigInterface>;
+    protected getRowsConfig(): Promise<Array<RcsbFvRowConfigInterface>>;
     private buildExternalTracks;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.d.ts

@@ -1,5 +1,7 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
+import { RcsbFvBoardConfigInterface } from "@rcsb/rcsb-saguaro";
 export declare class RcsbFvGroupAlignment extends RcsbFvAbstractModule {
     protected protectedBuild(): Promise<void>;
     protected concatAlignmentAndAnnotationTracks(): void;
+    protected getBoardConfig(): Promise<RcsbFvBoardConfigInterface>;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAnnotation.d.ts

@@ -1,5 +1,7 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
+import { RcsbFvBoardConfigInterface } from "@rcsb/rcsb-saguaro";
 export declare class RcsbFvGroupAnnotation extends RcsbFvAbstractModule {
     protectedBuild(): Promise<void>;
+    protected getBoardConfig(): Promise<RcsbFvBoardConfigInterface>;
     protected concatAlignmentAndAnnotationTracks(): void;
 }

package/build/dist/RcsbUtils/Groups/GroupGapLessTransformer.d.ts

@@ -0,0 +1,8 @@
+import { AlignmentResponse, AnnotationFeatures } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+export declare class GroupGapLessTransformer {
+    private readonly gapLessReference;
+    private refLength;
+    private processAlignments;
+    gapLessAlignments(alignments: AlignmentResponse): void;
+    gapLessFeatures(annotations: Array<AnnotationFeatures>): void;
+}

package/build/dist/RcsbUtils/TrackGenerators/{AlignmentVariation.d.ts → GroupExternalTrackBuilder.d.ts}

@@ -1,2 +1,2 @@
 import { ExternalTrackBuilderInterface } from "../../RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface";
-export declare function alignmentVariation(): ExternalTrackBuilderInterface;
+export declare function groupExternalTrackBuilder(): ExternalTrackBuilderInterface;

package/build/dist/RcsbUtils/TrackGenerators/Logo.d.ts

@@ -5,6 +5,7 @@ export declare class Logo<T extends string> {
     constructor(logo: AlignmentLogo[]);
     private aaTypes;
     get(aa: T): number;
+    total(): number;
     forEach(callback: (aa: T, n: number) => void): void;
     mode(): T;
     frequency(): {