@rcsb/rcsb-saguaro-app 4.4.13 → 4.4.15

package/build/dist/RcsbFvUI/AbstractMenuItemComponent.d.ts

@@ -1,17 +1,8 @@
 import React from "react";
-import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface";
-declare type MenuActionArgsType<T extends unknown[]> = [string, ...T, RcsbFvAdditionalConfig?];
-export declare type PfvMethodType<T extends unknown[]> = (...x: MenuActionArgsType<T>) => Promise<RcsbFvModulePublicInterface>;
-interface MenuActionInterface<T extends unknown[]> {
-    pfvMethod: PfvMethodType<T>;
-    pfvParams: T;
-    additionalConfig?: RcsbFvAdditionalConfig;
+export declare abstract class AbstractMenuItemComponent<P extends {
+    stateChange(state: S, prevState: S): void;
+}, S extends {}, SS extends S = S> extends React.Component<P, S & SS> {
+    componentDidUpdate(prevProps: Readonly<P & {
+        stateChange(newState: S, oldState: S): void;
+    }>, prevState: Readonly<S & SS>, snapshot?: any): void;
 }
-export interface MenuItemInterface<T extends unknown[]> {
-    elementId: string;
-    actionMethod: MenuActionInterface<T>;
-}
-export declare abstract class AbstractMenuItemComponent<T extends unknown[], A = {}, S = any> extends React.Component<MenuItemInterface<T> & A, S> {
-    abstract execute(): void;
-}
-export {};

package/build/dist/RcsbFvUI/Components/FilterItemComponent.d.ts

@@ -1,18 +1,18 @@
 /// <reference types="react" />
 import { AbstractMenuItemComponent } from "../AbstractMenuItemComponent";
-import { RcsbFvModulePublicInterface } from "../../RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface";
-interface FilterItemState {
-    collapseIn: boolean;
+interface FilterItemProps {
+    elements: string[];
+    stateChange: (state: FilterPartialState, prevState: FilterPartialState) => void;
+}
+interface FilterPartialState {
+    filteredElements: string[];
 }
-export declare class FilterItemComponent<T extends unknown[]> extends AbstractMenuItemComponent<T, {
-    pfv: RcsbFvModulePublicInterface;
-}, {
+interface FilterItemState extends FilterPartialState {
     collapseIn: boolean;
-}> {
+}
+export declare class FilterItemComponent extends AbstractMenuItemComponent<FilterItemProps, FilterPartialState, FilterItemState> {
     private readonly allowedValues;
     readonly state: FilterItemState;
     render(): JSX.Element;
-    componentDidMount(): Promise<void>;
-    execute(): void;
 }
 export {};

package/build/dist/RcsbFvUI/Components/PaginationItemComponent.d.ts

@@ -1,28 +1,24 @@
 /// <reference types="react" />
-import { AbstractMenuItemComponent, MenuItemInterface } from "../AbstractMenuItemComponent";
-import { RcsbFvModulePublicInterface } from "../../RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface";
-export declare class PaginationItemComponent<T extends unknown[]> extends AbstractMenuItemComponent<T, {
-    count: number;
-    pfv: RcsbFvModulePublicInterface;
-}, {
+import { AbstractMenuItemComponent } from "../AbstractMenuItemComponent";
+interface PaginationItemState {
     after: number;
     first: number;
-}> {
-    private subscription;
-    readonly state: {
-        after: number;
-        first: number;
-    };
+}
+interface PaginationItemProps {
+    count: number;
+    after: string;
+    first: number;
+    stateChange(state: PaginationItemState, prevState: PaginationItemState): void;
+}
+export declare class PaginationItemComponent extends AbstractMenuItemComponent<PaginationItemProps, PaginationItemState> {
+    readonly state: PaginationItemState;
     render(): JSX.Element;
-    componentDidUpdate(prevProps: Readonly<MenuItemInterface<T> & {
-        count: number;
-    }>, prevState: Readonly<{
-        after: number;
-        first: number;
-    }>, snapshot?: any): Promise<void>;
-    execute(): Promise<void>;
+    componentDidUpdate(prevProps: Readonly<PaginationItemProps & {
+        stateChange(newState: PaginationItemState, oldState: PaginationItemState): void;
+    }>, prevState: Readonly<PaginationItemState>, snapshot?: any): void;
     private next;
     private role;
     private textColor;
     private switchAction;
 }
+export {};

package/build/dist/RcsbFvUI/Helper/ActionMethods.d.ts

@@ -0,0 +1,11 @@
+import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../../RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface";
+export declare namespace ActionMethods {
+    type PfvMethodType<T extends unknown[]> = (...pfvParams: MenuActionArgsType<T>) => Promise<RcsbFvModulePublicInterface>;
+    type MenuActionArgsType<T extends unknown[]> = [string, ...T, RcsbFvAdditionalConfig?];
+    export interface FvChangeConfigInterface {
+        beforeChangeCallback?: (module: RcsbFvModulePublicInterface | undefined) => void;
+        onChangeCallback?: (module: RcsbFvModulePublicInterface) => void;
+    }
+    export function paginationCallback<T extends unknown[]>(): (elementId: string, pfv: RcsbFvModulePublicInterface, pfvMethod: PfvMethodType<T>, pfvParams: T, additionalConfig?: RcsbFvAdditionalConfig & FvChangeConfigInterface) => void;
+    export {};
+}

package/build/dist/RcsbFvUI/MenuItemFactory.d.ts

@@ -1,7 +1,15 @@
 /// <reference types="react" />
-import { PfvMethodType } from "./AbstractMenuItemComponent";
-import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface";
 export declare class MenuItemFactory {
-    static getPaginationItem<T extends unknown[]>(elementId: string, pfvMethod: PfvMethodType<T>, pfv: RcsbFvModulePublicInterface, count: number, additionalConfig: RcsbFvAdditionalConfig, ...x: T): JSX.Element;
-    static getFilterItem<T extends unknown[]>(elementId: string, pfvMethod: PfvMethodType<T>, pfv: RcsbFvModulePublicInterface, additionalConfig: RcsbFvAdditionalConfig, ...x: T): JSX.Element;
+    static getPaginationItem(count: number, after: string, first: number, stateChange: (state: {
+        after: number;
+        first: number;
+    }, prevState: {
+        after: number;
+        first: number;
+    }) => void): JSX.Element;
+    static getFilterItem(elements: string[], stateChange: (state: {
+        filteredElements: string[];
+    }, prevState: {
+        filteredElements: string[];
+    }) => void): JSX.Element;
 }

package/build/dist/RcsbFvWeb/RcsbFvBuilder/RcsbFvGroupAlignmentBuilder.d.ts

@@ -0,0 +1,7 @@
+import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
+import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
+import { ActionMethods } from "../../RcsbFvUI/Helper/ActionMethods";
+export declare class RcsbFvGroupAlignmentBuilder {
+    static buildSequenceIdentityAlignmentFv(elementId: string, groupId: string, query?: SearchQuery, additionalConfig?: RcsbFvAdditionalConfig & ActionMethods.FvChangeConfigInterface): Promise<RcsbFvModulePublicInterface>;
+    static buildUniprotAlignmentFv(elementId: string, upAcc: string, query?: SearchQuery, additionalConfig?: RcsbFvAdditionalConfig & ActionMethods.FvChangeConfigInterface): Promise<RcsbFvModulePublicInterface>;
+}

package/build/dist/RcsbFvWeb/RcsbFvBuilder.d.ts

@@ -5,6 +5,7 @@ import { PfvBuilderInterface } from "./RcsbFvBuilder/RcsbFvProteinSequenceBuilde
 import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
 import { PairwiseAlignmentInterface } from "../RcsbUtils/PairwiseAlignmentTools/PairwiseAlignmentBuilder";
+import { ActionMethods } from "../RcsbFvUI/Helper/ActionMethods";
 export declare function unmount(elementId: string): void;
 export declare function buildMultipleAlignmentSequenceFv(elementFvId: string, elementSelectId: string, upAcc: string, config?: UniprotSequenceConfig, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
 export declare function buildEntitySummaryFv(elementFvId: string, elementSelectId: string, entityId: string): Promise<RcsbFvModulePublicInterface>;
@@ -24,4 +25,5 @@ export declare function buildEntryChromosome(elementFvId: string, entitySelectId
 export declare function buildEntityChromosome(elementFvId: string, elementSelectId: string, entityId: string): Promise<RcsbFvModulePublicInterface>;
 export declare function buildChromosome(elementFvId: string, entityId: string, chrId: string, elementSelectId?: string): Promise<RcsbFvModulePublicInterface>;
 export declare function buildGroupFv(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, query?: SearchQuery, additionalConfig?: RcsbFvAdditionalConfig): void;
-export declare function buildSequenceIdentityAlignmentFv(elementId: string, groupId: string, query?: SearchQuery, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
+export declare function buildSequenceIdentityAlignmentFv(elementId: string, groupId: string, query?: SearchQuery, additionalConfig?: RcsbFvAdditionalConfig & ActionMethods.FvChangeConfigInterface): Promise<RcsbFvModulePublicInterface>;
+export declare function buildUniprotAlignmentFv(elementId: string, upAcc: string, query?: SearchQuery, additionalConfig?: RcsbFvAdditionalConfig & ActionMethods.FvChangeConfigInterface): Promise<RcsbFvModulePublicInterface>;

package/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/{UniprotAlignmentTrackFactory.d.ts → MsaAlignmentTrackFactory.d.ts}

@@ -3,7 +3,7 @@ import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
 import { AnnotationFeatures, TargetAlignment } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro";
 import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
-export declare class UniprotAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]> {
+export declare class MsaAlignmentTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]> {
     private observedAlignmentTrackFactory;
     private positionalScoreAlignmentTrackFactory;
     constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);

package/build/dist/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvApp.d.ts

@@ -1,7 +1,10 @@
 import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../../RcsbFvModule/RcsbFvModuleInterface";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
+import { GroupReference } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { ActionMethods } from "../../../RcsbFvUI/Helper/ActionMethods";
 export declare namespace GroupPfvApp {
-    function alignment(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, entityCount: number, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
+    function alignment(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, entityCount: number, additionalConfig?: RcsbFvAdditionalConfig & ActionMethods.FvChangeConfigInterface): Promise<RcsbFvModulePublicInterface>;
     function structure(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, nTargets: number, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
     function bindingSites(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, nTargets: number, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
 }
+export declare function getReferenceFromGroupProvenance(groupProvenanceId: GroupProvenanceId): GroupReference;

package/build/dist/RcsbFvWeb/RcsbFvGroup/GroupTabs/GroupPfvUI.d.ts

@@ -1,14 +1,21 @@
-import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "../../RcsbFvModule/RcsbFvModuleInterface";
-import { PfvMethodType } from "../../../RcsbFvUI/AbstractMenuItemComponent";
-export interface AlignmentUIConfigInterface {
-    alignmentCount: number;
-    pfv: RcsbFvModulePublicInterface;
-}
-export interface StructureUIConfigInterface {
-    pfv: RcsbFvModulePublicInterface;
-}
 export declare class GroupPfvUI {
-    static alignmentUI<T extends unknown[]>(elementId: string, pfvMethod: PfvMethodType<T>, config: AlignmentUIConfigInterface, additionalConfig: RcsbFvAdditionalConfig, ...x: T): void;
-    static structureUI<T extends unknown[]>(elementId: string, pfvMethod: PfvMethodType<T>, config: StructureUIConfigInterface, additionalConfig: RcsbFvAdditionalConfig, ...x: T): void;
+    static alignmentUI(element: string | HTMLElement, paginationUI: {
+        count: number;
+        after: string;
+        first: number;
+        stateChange: (state: {
+            after: number;
+            first: number;
+        }, prevState: {
+            after: number;
+            first: number;
+        }) => void;
+    }): void;
+    static structureUI<T extends unknown[]>(elementId: string, elements: string[], stateChange: (state: {
+        filteredElements: string[];
+    }, prevState: {
+        filteredElements: string[];
+    }) => void): void;
+    static addBootstrapElement(elementId: string): HTMLElement;
     private static htmlElementUI;
 }

package/build/dist/RcsbGroupWeb/RcsbGroupView/RcsbGroupMembers/GroupMemberItem.d.ts

@@ -2,6 +2,7 @@ import * as React from "react";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
 interface GroupMemberItemInterface {
     item: ItemFeaturesInterface;
+    groupId: string;
     groupProvenanceId: GroupProvenanceId;
 }
 export interface ItemFeaturesInterface {

package/build/dist/app.d.ts

@@ -1,4 +1,4 @@
-export { buildEntryChromosome, buildFullChromosome, buildEntityChromosome, buildChromosome, buildEntityFv, buildEntitySummaryFv, buildSingleEntitySummaryFv, buildInstanceFv, buildInstanceSequenceFv, buildMultipleInstanceSequenceFv, buildAssemblySequenceFv, buildPairwiseAlignment, buildPfv, buildMultipleAlignmentSequenceFv, buildUniprotEntityFv, buildUniprotEntityInstanceFv, buildUniprotFv, buildGroupFv, buildSequenceIdentityAlignmentFv, unmount } from "./RcsbFvWeb/RcsbFvBuilder";
+export { buildEntryChromosome, buildFullChromosome, buildEntityChromosome, buildChromosome, buildEntityFv, buildEntitySummaryFv, buildSingleEntitySummaryFv, buildInstanceFv, buildInstanceSequenceFv, buildMultipleInstanceSequenceFv, buildAssemblySequenceFv, buildPairwiseAlignment, buildPfv, buildMultipleAlignmentSequenceFv, buildUniprotEntityFv, buildUniprotEntityInstanceFv, buildUniprotFv, buildGroupFv, buildSequenceIdentityAlignmentFv, buildUniprotAlignmentFv, unmount } from "./RcsbFvWeb/RcsbFvBuilder";
 import { rcsbRequestCtxManager } from "./RcsbRequest/RcsbRequestContextManager";
 export { rcsbRequestCtxManager as RcsbRequestContextManager };
 export { RcsbFvUI } from "./RcsbExport/RcsbFvUI";