@rcsb/rcsb-saguaro-app 4.4.0-models.37 → 4.4.0-models.38

package/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AlignmentBlockFactory.d.ts

@@ -5,6 +5,7 @@ import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro";
 import { TrackFactoryInterface } from "../RcsbFvTrackFactory/TrackFactoryInterface";
 export declare class AlignmentBlockFactory implements BlockFactoryInterface<[AlignmentRequestContextType, AlignmentResponse], [AlignmentRequestContextType, TargetAlignment]> {
     readonly trackFactory: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>;
-    constructor(alignmentTrackFactory: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>);
+    readonly trackConfigModifier: (alignmentContext: AlignmentRequestContextType, targetAlignment: TargetAlignment) => Promise<Partial<RcsbFvRowConfigInterface>>;
+    constructor(alignmentTrackFactory: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>, trackModifier: (alignmentContext: AlignmentRequestContextType, targetAlignment: TargetAlignment) => Promise<Partial<RcsbFvRowConfigInterface>>);
     getBlock(alignmentRequestContext: AlignmentRequestContextType, alignmentData: AlignmentResponse): Promise<RcsbFvRowConfigInterface[]>;
 }

package/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/AnnotationsBlockFactory.d.ts

@@ -9,6 +9,7 @@ export declare class AnnotationsBlockFactory implements BlockFactoryInterface<[A
     private readonly annotationBlockManager;
     private readonly annotationsBlockData;
     readonly trackFactory: TrackFactoryInterface<[TrackManagerInterface]>;
-    constructor(annotationBlockManager: BlockManagerInterface<[AnnotationRequestContext, AnnotationFeatures[]]>, annotationTrackFactory: TrackFactoryInterface<[TrackManagerInterface]>);
+    readonly trackConfigModifier: (trackManager: TrackManagerInterface) => Promise<Partial<RcsbFvRowConfigInterface>>;
+    constructor(annotationBlockManager: BlockManagerInterface<[AnnotationRequestContext, AnnotationFeatures[]]>, annotationTrackFactory: TrackFactoryInterface<[TrackManagerInterface]>, trackModifier: (trackManager: TrackManagerInterface) => Promise<Partial<RcsbFvRowConfigInterface>>);
     getBlock(annotationsRequestContext: AnnotationRequestContext, annotations: AnnotationFeatures[]): Promise<RcsbFvRowConfigInterface[]>;
 }

package/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvBlockFactory/BlockFactoryInterface.d.ts

@@ -2,5 +2,6 @@ import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro";
 import { TrackFactoryInterface } from "../RcsbFvTrackFactory/TrackFactoryInterface";
 export interface BlockFactoryInterface<T extends any[], S extends any[]> {
     readonly trackFactory: TrackFactoryInterface<S>;
+    readonly trackConfigModifier: (...args: S) => Promise<Partial<RcsbFvRowConfigInterface>>;
     getBlock(...args: T): Promise<RcsbFvRowConfigInterface[]>;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts

@@ -18,6 +18,7 @@ export declare abstract class RcsbFvAbstractModule implements RcsbFvModuleInterf
     protected referenceTrack: RcsbFvRowConfigInterface;
     protected alignmentTracks: Array<RcsbFvRowConfigInterface>;
     protected annotationTracks: Array<RcsbFvRowConfigInterface>;
+    protected buildConfig: RcsbFvModuleBuildInterface;
     private rcsbFvRowUpdatePromise;
     private activeDisplayFlag;
     constructor(elementId: string, rcsbFv: RcsbFv);
@@ -32,8 +33,8 @@ export declare abstract class RcsbFvAbstractModule implements RcsbFvModuleInterf
     getAnnotationConfigData(): Promise<Array<RcsbFvRowConfigInterface>>;
     build(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
     wait(): Promise<void>;
-    protected abstract protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
-    protected abstract concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protected abstract protectedBuild(): Promise<void>;
+    protected abstract concatAlignmentAndAnnotationTracks(): void;
     protected buildAlignmentTracks(alignmentRequestContext: AlignmentRequestContextType, alignmentResponse: AlignmentResponse, trackFactories?: {
         alignmentTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>;
         sequenceTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, string]>;

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvChromosome.d.ts

@@ -1,5 +1,4 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
-import { RcsbFvModuleBuildInterface } from "./RcsbFvModuleInterface";
 export declare class RcsbFvChromosome extends RcsbFvAbstractModule {
     private readonly targetAlignmentList;
     private maxRange;
@@ -44,7 +43,7 @@ export declare class RcsbFvChromosome extends RcsbFvAbstractModule {
     private addSequences;
     private setDisplayView;
     private plot;
-    protected protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
+    protected protectedBuild(): Promise<void>;
     getTargets(): Promise<Array<string>>;
-    protected concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protected concatAlignmentAndAnnotationTracks(): void;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvEntity.d.ts

@@ -1,7 +1,6 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
-import { RcsbFvModuleBuildInterface } from "./RcsbFvModuleInterface";
 export declare class RcsbFvEntity extends RcsbFvAbstractModule {
-    protected protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
-    protected concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protected protectedBuild(): Promise<void>;
+    protected concatAlignmentAndAnnotationTracks(): void;
     private titleSuffix;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAlignment.d.ts

@@ -1,6 +1,5 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
-import { RcsbFvModuleBuildInterface } from "./RcsbFvModuleInterface";
 export declare class RcsbFvGroupAlignment extends RcsbFvAbstractModule {
-    protected protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
-    protected concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protected protectedBuild(): Promise<void>;
+    protected concatAlignmentAndAnnotationTracks(): void;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvGroupAnnotation.d.ts

@@ -1,6 +1,5 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
-import { RcsbFvModuleBuildInterface } from "./RcsbFvModuleInterface";
 export declare class RcsbFvGroupAnnotation extends RcsbFvAbstractModule {
-    protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
-    protected concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protectedBuild(): Promise<void>;
+    protected concatAlignmentAndAnnotationTracks(): void;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvInstance.d.ts

@@ -1,6 +1,5 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
-import { RcsbFvModuleBuildInterface } from "./RcsbFvModuleInterface";
 export declare class RcsbFvInstance extends RcsbFvAbstractModule {
-    protected protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
-    protected concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protected protectedBuild(): Promise<void>;
+    protected concatAlignmentAndAnnotationTracks(): void;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvInterface.d.ts

@@ -1,10 +1,9 @@
 import { AnnotationFeatures } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
-import { RcsbFvModuleBuildInterface } from "./RcsbFvModuleInterface";
 export declare class RcsbFvInterface extends RcsbFvAbstractModule {
     private instanceId;
-    protected protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
-    protected concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protected protectedBuild(): Promise<void>;
+    protected concatAlignmentAndAnnotationTracks(): void;
     private typeSuffix;
     private titleSuffix;
     private trackTitle;

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface.d.ts

@@ -1,9 +1,11 @@
-import { AlignmentResponse, Feature, FilterInput, GroupReference, SequenceReference, Source } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { AlignmentResponse, Feature, FilterInput, GroupReference, SequenceReference, Source, TargetAlignment } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { RcsbFv, RcsbFvBoardConfigInterface, RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro";
 import { AnnotationProcessingInterface } from "../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
 import { ExternalTrackBuilderInterface } from "../../RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface";
 import { PairwiseAlignmentInterface } from "../../RcsbUtils/PairwiseAlignmentTools/PairwiseAlignmentBuilder";
+import { AlignmentRequestContextType } from "../RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory";
+import { TrackManagerInterface } from "../RcsbFvFactories/RcsbFvBlockFactory/BlockManager/TrackManagerInterface";
 export declare type RcsbContextType = Partial<{
     entryId: string;
     entityId: string;
@@ -30,6 +32,10 @@ export interface RcsbFvAdditionalConfig {
         after: string;
     };
     rcsbContext?: RcsbContextType;
+    trackConfigModifier?: {
+        alignment?: (alignmentContext: AlignmentRequestContextType, targetAlignment: TargetAlignment) => Promise<Partial<RcsbFvRowConfigInterface>>;
+        annotations?: (trackManager: TrackManagerInterface) => Promise<Partial<RcsbFvRowConfigInterface>>;
+    };
 }
 export interface RcsbFvModuleBuildInterface {
     group?: GroupReference;

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvPairwiseAlignment.d.ts

@@ -1,6 +1,5 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
-import { RcsbFvModuleBuildInterface } from "./RcsbFvModuleInterface";
 export declare class RcsbFvPairwiseAlignment extends RcsbFvAbstractModule {
-    protected protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
-    protected concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protected protectedBuild(): Promise<void>;
+    protected concatAlignmentAndAnnotationTracks(): void;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvProteinSequence.d.ts

@@ -1,6 +1,5 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
-import { RcsbFvModuleBuildInterface } from "./RcsbFvModuleInterface";
 export declare class RcsbFvProteinSequence extends RcsbFvAbstractModule {
-    protected protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
-    protected concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protected protectedBuild(): Promise<void>;
+    protected concatAlignmentAndAnnotationTracks(): void;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvUniprot.d.ts

@@ -1,6 +1,5 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
-import { RcsbFvModuleBuildInterface } from "./RcsbFvModuleInterface";
 export declare class RcsbFvUniprot extends RcsbFvAbstractModule {
-    protected protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
-    protected concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protected protectedBuild(): Promise<void>;
+    protected concatAlignmentAndAnnotationTracks(): void;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotEntity.d.ts

@@ -1,7 +1,6 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
-import { RcsbFvModuleBuildInterface } from "./RcsbFvModuleInterface";
 export declare class RcsbFvUniprotEntity extends RcsbFvAbstractModule {
-    protected protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
-    protected concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protected protectedBuild(): Promise<void>;
+    protected concatAlignmentAndAnnotationTracks(): void;
     private titleSuffix;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvUniprotInstance.d.ts

@@ -1,6 +1,5 @@
 import { RcsbFvAbstractModule } from "./RcsbFvAbstractModule";
-import { RcsbFvModuleBuildInterface } from "./RcsbFvModuleInterface";
 export declare class RcsbFvUniprotInstance extends RcsbFvAbstractModule {
-    protected protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
-    protected concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
+    protected protectedBuild(): Promise<void>;
+    protected concatAlignmentAndAnnotationTracks(): void;
 }