@rcsb/rcsb-saguaro-app 4.4.0-models.21 → 4.4.0-models.25

package/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/AlignmentTrackFactory.d.ts

@@ -3,6 +3,7 @@ import { AlignedRegion, TargetAlignment } from "@rcsb/rcsb-api-tools/build/RcsbG
 import { PolymerEntityInstanceTranslate, AlignmentContextInterface } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { TrackFactoryInterface } from "../TrackFactoryInterface";
 import { AlignmentCollectConfig } from "../../../../RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface";
+import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
 export declare type AlignmentRequestContextType = AlignmentCollectConfig & {
     querySequence?: string;
 };
@@ -10,9 +11,10 @@ export declare class AlignmentTrackFactory implements TrackFactoryInterface<[Ali
     private readonly sequenceTrackFactory;
     private readonly entityInstanceTranslator;
     private readonly trackTitleFactory;
-    constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
+    constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate, trackTitleFactory?: TrackTitleFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>);
     getTrack(alignmentRequestContext: AlignmentRequestContextType, targetAlignment: TargetAlignment, alignedRegionToTrackElementList?: (region: AlignedRegion, alignmentContext: AlignmentContextInterface) => Array<RcsbFvTrackDataElementInterface>): Promise<RcsbFvRowConfigInterface>;
     buildAlignmentRowTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string | RcsbFvLink>;
+    buildAlignmentRowTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string>;
     private getAlignmentTrackConfiguration;
     alignedRegionToTrackElementList(region: AlignedRegion, alignmentContext: AlignmentContextInterface): Array<RcsbFvTrackDataElementInterface>;
     addAuthorResIds(e: RcsbFvTrackDataElementInterface, alignmentContext: AlignmentContextInterface): RcsbFvTrackDataElementInterface;

package/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.d.ts

@@ -1,8 +1,8 @@
-import { AlignmentCollectConfig } from "../../../../RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface";
-import { RcsbFvLink, RcsbFvRowConfigInterface, RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro";
+import { RcsbFvRowConfigInterface, RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro";
 import { AlignmentContextInterface, PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { TrackFactoryInterface } from "../TrackFactoryInterface";
 import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
+import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
 interface BuildSequenceDataInterface extends AlignmentContextInterface {
     sequence: string;
     begin: number;
@@ -10,11 +10,10 @@ interface BuildSequenceDataInterface extends AlignmentContextInterface {
 }
 export declare class SequenceTrackFactory implements TrackFactoryInterface<[AlignmentRequestContextType, string]> {
     private readonly entityInstanceTranslator;
-    constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
+    private readonly trackTitleFactory;
+    constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate, trackTitleFactory?: TrackTitleFactoryInterface<[AlignmentRequestContextType]>);
     getTrack(alignmentQueryContext: AlignmentRequestContextType, querySequence: string): Promise<RcsbFvRowConfigInterface>;
     buildSequenceData(config: BuildSequenceDataInterface, source: "from" | "to"): Array<RcsbFvTrackDataElementInterface>;
     addAuthorResIds(e: RcsbFvTrackDataElementInterface, alignmentContext: AlignmentContextInterface): RcsbFvTrackDataElementInterface;
-    buildSequenceRowTitle(requestConfig: AlignmentCollectConfig): string | RcsbFvLink;
-    private buildInstanceId;
 }
 export {};

package/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/AlignmentTrackTitleFactory.d.ts

@@ -7,5 +7,6 @@ export declare class AlignmentTrackTitleFactory implements TrackTitleFactoryInte
     private readonly entityInstanceTranslator;
     constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
     getTrackTitle(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string | RcsbFvLink>;
+    getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType, targetAlignment: TargetAlignment): Promise<string>;
     private buildInstanceId;
 }

package/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/InstanceSequenceTrackTitleFactory.d.ts

@@ -0,0 +1,10 @@
+import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
+import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
+import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
+import { RcsbFvLink } from "@rcsb/rcsb-saguaro";
+export declare class InstanceSequenceTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType]> {
+    private readonly trackTitleFactory;
+    constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
+    getTrackTitle(alignmentQueryContext: AlignmentRequestContextType): Promise<string | RcsbFvLink>;
+    getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType): Promise<string>;
+}

package/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryImpl/SequenceTrackTitleFactory.d.ts

@@ -0,0 +1,11 @@
+import { TrackTitleFactoryInterface } from "../TrackTitleFactoryInterface";
+import { AlignmentRequestContextType } from "../TrackFactoryImpl/AlignmentTrackFactory";
+import { RcsbFvLink } from "@rcsb/rcsb-saguaro";
+import { PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
+export declare class SequenceTrackTitleFactory implements TrackTitleFactoryInterface<[AlignmentRequestContextType]> {
+    private readonly entityInstanceTranslator;
+    constructor(entityInstanceTranslator?: PolymerEntityInstanceTranslate);
+    getTrackTitle(alignmentQueryContext: AlignmentRequestContextType): Promise<string | RcsbFvLink>;
+    getTrackTitlePrefix(alignmentQueryContext: AlignmentRequestContextType): Promise<string>;
+    private buildInstanceId;
+}

package/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackTitleFactoryInterface.d.ts

@@ -1,4 +1,5 @@
 import { RcsbFvLink } from "@rcsb/rcsb-saguaro";
 export interface TrackTitleFactoryInterface<T extends any[]> {
     getTrackTitle(...args: T): Promise<string | RcsbFvLink>;
+    getTrackTitlePrefix(...args: T): Promise<string>;
 }

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts

@@ -34,7 +34,10 @@ export declare abstract class RcsbFvAbstractModule implements RcsbFvModuleInterf
     wait(): Promise<void>;
     protected abstract protectedBuild(buildConfig: RcsbFvModuleBuildInterface): Promise<void>;
     protected abstract concatAlignmentAndAnnotationTracks(buildConfig: RcsbFvModuleBuildInterface): void;
-    protected buildAlignmentTracks(alignmentRequestContext: AlignmentRequestContextType, alignmentResponse: AlignmentResponse, trackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>): Promise<void>;
+    protected buildAlignmentTracks(alignmentRequestContext: AlignmentRequestContextType, alignmentResponse: AlignmentResponse, trackFactories?: {
+        alignmentTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, TargetAlignment]>;
+        sequenceTrackFactory?: TrackFactoryInterface<[AlignmentRequestContextType, string]>;
+    }): Promise<void>;
     protected buildAnnotationsTrack(annotationsRequestContext: AnnotationRequestContext, annotationsFeatures: AnnotationFeatures[], annotationConfigMap?: AnnotationConfigInterface): Promise<void>;
     private buildExternalTracks;
 }