@rcsb/rcsb-saguaro-app 4.4.0-models.13 → 4.4.0-models.16

package/build/dist/RcsbChartWeb/RcsbChartComponent/ChartConfigInterface.d.ts

@@ -24,6 +24,20 @@ export interface ChartConfigInterface {
     barClickCallback?: BarClickCallbackType;
     sort?: (b: ChartDataInterface, a: ChartDataInterface) => number;
     tooltipText?: (a: ChartDataInterface) => string;
+    chartDisplayConfig?: Partial<ChartDisplayConfigInterface>;
+}
+export interface ChartDisplayConfigInterface {
+    paddingLeft: number;
+    paddingTopLarge: number;
+    paddingTop: number;
+    paddingRight: number;
+    constWidth: number;
+    constHeight: number;
+    xIncrement: number;
+    xDomainPadding: number;
+    barWidth: number;
+    fontFamily: string;
+    fontSize: number;
 }
 export declare enum ChartType {
     pie = "pie",

package/build/dist/RcsbChartWeb/RcsbChartTools/ChartTools.d.ts

@@ -1,17 +1,18 @@
-import { ChartObjectInterface } from "../RcsbChartComponent/ChartConfigInterface";
+import { ChartDisplayConfigInterface, ChartObjectInterface } from "../RcsbChartComponent/ChartConfigInterface";
 import { ChartDataInterface } from "../RcsbChartDataProvider/ChartDataProviderInterface";
 export declare class ChartTools {
-    static readonly paddingLeft: number;
-    static readonly paddingTopLarge: number;
-    static readonly paddingTop: number;
-    static readonly paddingRight: number;
-    static readonly constWidth: number;
-    static readonly constHeight: number;
-    static readonly xIncrement: number;
-    static readonly xDomainPadding: number;
-    static readonly barWidth: number;
-    static readonly fontFamily: string;
-    static readonly fontSize: number;
+    private static readonly paddingLeft;
+    private static readonly paddingTopLarge;
+    private static readonly paddingTop;
+    private static readonly paddingRight;
+    private static readonly constWidth;
+    private static readonly constHeight;
+    private static readonly xIncrement;
+    private static readonly xDomainPadding;
+    private static readonly barWidth;
+    private static readonly fontFamily;
+    private static readonly fontSize;
+    static getConfig<T>(key: keyof ChartDisplayConfigInterface, chartDisplayConfig: Partial<ChartDisplayConfigInterface>): T;
     static mergeGroupSize(data: ChartObjectInterface[], size: number, mergeName?: string): ChartDataInterface[];
     static mostPopulatedGroups(data: ChartObjectInterface[], maxGroups: number, mergeName?: string): ChartDataInterface[];
     static mergeDomainMaxValue(data: ChartObjectInterface[], maxValue: number): ChartDataInterface[];

package/build/dist/RcsbFvWeb/RcsbFvFactories/RcsbFvTrackFactory/TrackFactoryImpl/SequenceTrackFactory.d.ts

@@ -1,6 +1,6 @@
 import { AlignmentCollectConfig } from "../../../../RcsbCollectTools/AlignmentCollector/AlignmentCollectorInterface";
 import { RcsbFvLink, RcsbFvRowConfigInterface, RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro";
-import { PolymerEntityInstanceTranslate, AlignmentContextInterface } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
+import { AlignmentContextInterface, PolymerEntityInstanceTranslate } from "../../../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { TrackFactoryInterface } from "../TrackFactoryInterface";
 import { AlignmentRequestContextType } from "./AlignmentTrackFactory";
 interface BuildSequenceDataInterface extends AlignmentContextInterface {

package/build/dist/RcsbGroupWeb/RcsbGroupBuilder.d.ts

@@ -1,5 +1,4 @@
 import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
-import { SearchQueryType } from "../RcsbSeacrh/SearchRequestProperty";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
 import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
 import { GroupChartAdditionalProperties } from "./RcsbGroupView/RcsbGroupChart/GroupChartAdditionalProperties";
@@ -7,11 +6,12 @@ import { SearchQueryContextManagerSubjectInterface } from "./RcsbGroupView/RcsbG
 import { Subscription } from "rxjs";
 import { RcsbGroupContentTextInterface } from "./RcsbGroupView/RcsbGroupContent/RcsbGroupContentComponent";
 import { ResidueChartInterface } from "./RcsbGroupView/RcsbResidueChart/ResidueChartTools/ResidueChartTools";
-export declare function buildSearchRequest(elementId: string, searchQuery: SearchQueryType, returnType: ReturnType): Promise<void>;
+import { ChartDisplayConfigInterface } from "../RcsbChartWeb/RcsbChartComponent/ChartConfigInterface";
+export declare function buildSearchRequest(elementId: string, searchQuery: SearchQuery, returnType: ReturnType): Promise<void>;
 export declare function buildGroup(elementId: string, groupProvenance: GroupProvenanceId, groupId: string, query?: SearchQuery, facetLayoutGrid?: string[], additionalProperties?: GroupChartAdditionalProperties): Promise<void>;
 export declare function buildGroupMembers(elementId: string, groupProvenance: GroupProvenanceId, groupId: string, nRows: number, nColumns: number, query?: SearchQuery): void;
 export declare function buildGroupContent(elementId: string, groupProvenance: GroupProvenanceId, groupId: string, query?: SearchQuery, textConfig?: RcsbGroupContentTextInterface): void;
-export declare function buildResidueDistribution(elementId: string, granularity: ResidueChartInterface["granularity"], rcsbId: string, facetLayoutGrid?: string[]): void;
+export declare function buildResidueDistribution(elementId: string, granularity: ResidueChartInterface["granularity"], rcsbId: string, facetLayoutGrid?: string[], chartDisplayConfig?: Partial<ChartDisplayConfigInterface>): void;
 export declare const searchQueryContextManager: {
     subscribe(f: (o: SearchQueryContextManagerSubjectInterface) => void): Subscription;
 };

package/build/dist/RcsbGroupWeb/RcsbGroupView/RcsbGroupChart/RcsbStatsChartComponent.d.ts

@@ -1,11 +1,11 @@
 import * as React from "react";
 import { FacetStoreInterface } from "../../../RcsbSeacrh/FacetStore/FacetStoreInterface";
-import { SearchQueryType } from "../../../RcsbSeacrh/SearchRequestProperty";
 import { BucketFacet } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchResultInterface";
 import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
+import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 interface RcsbStatsChartInterface {
     facetStore: FacetStoreInterface;
-    searchQuery: SearchQueryType;
+    searchQuery: SearchQuery;
     returnType: ReturnType;
 }
 interface RcsbStatsChartState {

package/build/dist/RcsbGroupWeb/RcsbGroupView/RcsbGroupDisplay.d.ts

@@ -1,15 +1,15 @@
 import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { FacetStoreInterface } from "../../RcsbSeacrh/FacetStore/FacetStoreInterface";
-import { SearchQueryType } from "../../RcsbSeacrh/SearchRequestProperty";
 import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
 import { GroupChartAdditionalProperties } from "./RcsbGroupChart/GroupChartAdditionalProperties";
 import { RcsbGroupContentTextInterface } from "./RcsbGroupContent/RcsbGroupContentComponent";
 import { ResidueChartInterface } from "./RcsbResidueChart/ResidueChartTools/ResidueChartTools";
+import { ChartDisplayConfigInterface } from "../../RcsbChartWeb/RcsbChartComponent/ChartConfigInterface";
 export declare class RcsbGroupDisplay {
-    static displayRcsbSearchStats(elementId: string, facetStore: FacetStoreInterface, searchQuery: SearchQueryType, returnType: ReturnType): Promise<void>;
+    static displayRcsbSearchStats(elementId: string, facetStore: FacetStoreInterface, searchQuery: SearchQuery, returnType: ReturnType): Promise<void>;
     static displaySearchAttributes(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, searchQuery?: SearchQuery, facetLayoutGrid?: string[], additionalProperties?: GroupChartAdditionalProperties): Promise<void>;
     static displayGroupMembers(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, nRows: number, nColumns: number, query?: SearchQuery): void;
     static displayGroupContent(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, query?: SearchQuery, textConfig?: RcsbGroupContentTextInterface): void;
-    static displayResidueDistribution(elementId: string, granularity: ResidueChartInterface["granularity"], rcsbId: string, facetLayoutGrid?: string[]): void;
+    static displayResidueDistribution(elementId: string, granularity: ResidueChartInterface["granularity"], rcsbId: string, facetLayoutGrid?: string[], chartDisplayConfig?: Partial<ChartDisplayConfigInterface>): void;
 }

package/build/dist/RcsbGroupWeb/RcsbGroupView/RcsbResidueChart/RcsbResidueChartComponent.d.ts

@@ -1,12 +1,14 @@
 import * as React from "react";
 import { ChartMapType } from "../RcsbGroupChart/GroupChartLayout";
 import { ResidueChartInterface } from "./ResidueChartTools/ResidueChartTools";
+import { ChartDisplayConfigInterface } from "../../../RcsbChartWeb/RcsbChartComponent/ChartConfigInterface";
 interface RcsbResidueChartState {
     layout: string[];
     chartMap: ChartMapType;
 }
 export declare class RcsbResidueChartComponent extends React.Component<ResidueChartInterface & {
     facetLayoutGrid?: string[];
+    chartDisplayConfig?: Partial<ChartDisplayConfigInterface>;
 }, RcsbResidueChartState> {
     render(): JSX.Element;
     componentDidMount(): Promise<void>;

package/build/dist/RcsbRequest/RcsbRequestContextManager.d.ts

@@ -10,7 +10,7 @@ import { EntryPropertyIntreface } from "../RcsbCollectTools/DataCollectors/Multi
 import { SearchQueryType } from "../RcsbSeacrh/SearchRequestProperty";
 import { FacetType } from "../RcsbSeacrh/FacetStore/FacetMemberInterface";
 import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
-import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
+import { ResultsContentType, SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { RequestInit as GraphqlRequestInit } from "graphql-request/src/types.dom";
 declare class RcsbRequestContextManager {
     private readonly polymerEntityToInstanceMap;
@@ -36,7 +36,7 @@ declare class RcsbRequestContextManager {
     getEntityToChromosome(entityIds: Array<string>): Promise<PolymerEntityChromosomeTranslate>;
     getGroupMemberProperties(groupQuery: QueryPolymer_Entity_GroupArgs): Promise<GroupPropertiesProvider>;
     getSearchQuery(searchQuery: SearchQuery): Promise<QueryResult | null>;
-    getSearchQueryFacets(query: SearchQueryType, facets: FacetType[], returnType: ReturnType): Promise<QueryResult | null>;
+    getSearchQueryFacets(query: SearchQueryType, facets: FacetType[], returnType: ReturnType, resultsContentType: ResultsContentType): Promise<QueryResult | null>;
     getInterfaceToInstance(interfaceId: string): Promise<InterfaceInstanceTranslate>;
     private getAssemblyInterfaces;
     initializeBorregoClient(config: {

package/build/dist/RcsbSeacrh/FacetStore/SingleFacets.d.ts

@@ -1,6 +1,7 @@
 import { FacetMemberInterface } from "./FacetMemberInterface";
 export declare const EXPERIMENTAL_METHOD_FACET: FacetMemberInterface;
 export declare const RESOLUTION_FACET: FacetMemberInterface;
+export declare const METHODOLOGY_FACET: FacetMemberInterface;
 export declare const RELEASE_DATE_FACET: FacetMemberInterface;
 export declare const SCOP_FACET: FacetMemberInterface;
 export declare const CATH_FACET: FacetMemberInterface;
@@ -34,4 +35,5 @@ export declare const SearchFacets: {
     GO_PROCESS_FACET: FacetMemberInterface;
     GO_COMPONENT_FACET: FacetMemberInterface;
     LIGAND_OF_INTEREST_FACET: FacetMemberInterface;
+    METHODOLOGY_FACET: FacetMemberInterface;
 };

package/build/dist/RcsbSeacrh/FacetTools.d.ts

@@ -1,5 +1,5 @@
 import { BucketFacet } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchResultInterface";
-import { ChartConfigInterface, ChartObjectInterface, ChartType } from "../RcsbChartWeb/RcsbChartComponent/ChartConfigInterface";
+import { ChartConfigInterface, ChartDisplayConfigInterface, ChartObjectInterface, ChartType } from "../RcsbChartWeb/RcsbChartComponent/ChartConfigInterface";
 import { FacetMemberInterface } from "./FacetStore/FacetMemberInterface";
 import { AttributeTextQueryParameters } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { Operator, Service } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
@@ -24,6 +24,33 @@ export declare class FacetTools {
     static getResultDrilldowns(facetMembers: FacetMemberInterface[], searchResultFacets: Array<BucketFacet>, labelList?: string[], recursiveOut?: Array<RcsbChartInterface>): Array<RcsbChartInterface>;
     static subtractDrilldowns(partial: Array<RcsbChartInterface>, full: Array<RcsbChartInterface>): Array<RcsbChartInterface>;
     static getFacetFromName(facetMembers: FacetMemberInterface[], name: string): FacetMemberInterface;
+    static addChartDisplayConfig(chart: RcsbChartInterface, chartDisplayConfig: Partial<ChartDisplayConfigInterface>): {
+        chartConfig: {
+            chartDisplayConfig: Partial<ChartDisplayConfigInterface>;
+            mergeGroupSize?: number;
+            mergeDomainMaxValue?: number;
+            mostPopulatedGroups?: number;
+            mergeName?: string;
+            domainMinValue?: number;
+            histogramBinIncrement?: number;
+            tickIncrement?: {
+                origin: number;
+                increment: number;
+            };
+            axisLabel?: string;
+            barClickCallback?: import("../RcsbChartWeb/RcsbChartComponent/ChartConfigInterface").BarClickCallbackType;
+            sort?: (b: import("../RcsbChartWeb/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataInterface, a: import("../RcsbChartWeb/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataInterface) => number;
+            tooltipText?: (a: import("../RcsbChartWeb/RcsbChartDataProvider/ChartDataProviderInterface").ChartDataInterface) => string;
+        };
+        chartType: ChartType;
+        labelList?: string[];
+        attribute: string;
+        attributeName: string;
+        title: string;
+        data: ChartObjectInterface[];
+        filters?: SearchFilter[];
+        contentType: "string" | "number" | "date";
+    };
     private static includeMissingFacets;
     private static getFacetChartTypeFromAttribute;
     private static getFacetFiltersFromName;

package/build/dist/RcsbSeacrh/SearchQueryTools.d.ts

@@ -1,16 +1,17 @@
 import { SearchQueryType } from "./SearchRequestProperty";
 import { LogicalOperator, Operator, ReturnType, Service } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
-import { SearchQuery, AttributeTextQueryParameters } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
+import { SearchQuery, AttributeTextQueryParameters, ResultsContentType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { FacetStoreInterface } from "./FacetStore/FacetStoreInterface";
 import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
 export declare namespace SearchQueryTools {
     function searchGroupQuery(groupProvenance: GroupProvenanceId, groupId: string, service?: Service): SearchQueryType;
     function addGroupNodeToSearchQuery(groupProvenanceId: GroupProvenanceId, groupId: string, searchQuery: SearchQueryType, service?: Service): SearchQueryType;
     function buildAttributeSearchQuery(attribute: string, value: AttributeTextQueryParameters['value'], operator: Operator, searchQuery: SearchQueryType, returnType: ReturnType, service: Service.Text | Service.TextChem, negation?: boolean): SearchQuery;
-    function buildNodeSearchQuery(node: SearchQueryType, searchQuery: SearchQueryType, returnType: ReturnType, logicalOperator?: LogicalOperator): SearchQuery;
+    function buildNodeSearchQuery(node: SearchQueryType, searchQuery: SearchQueryType, returnType: ReturnType, resultsContentType: ResultsContentType, logicalOperator?: LogicalOperator): SearchQuery;
     function buildSearchQuery(searchQuery: SearchQueryType, returnType: ReturnType, logicalOperator?: LogicalOperator): SearchQuery;
     function addNewNodeToAttributeSearchQuery(attribute: string, value: AttributeTextQueryParameters['value'], operator: Operator, searchQuery: SearchQueryType, service: Service.Text | Service.TextChem, negation?: boolean): SearchQueryType;
     function searchAttributeQuery(attribute: string, value: AttributeTextQueryParameters['value'], operator: Operator, service: Service.Text | Service.TextChem, negation?: boolean): SearchQueryType;
     function addNodeToSearchQuery(node: SearchQueryType, searchQuery: SearchQueryType, logicalOperator?: LogicalOperator): SearchQueryType;
     function getFacetStoreFromGroupProvenance(groupProvenanceId: GroupProvenanceId): FacetStoreInterface;
+    function searchContentType(searchQuery?: SearchQuery): ResultsContentType;
 }

package/build/dist/RcsbSeacrh/SearchRequestProperty.d.ts

@@ -1,14 +1,14 @@
 import { SearchRequest } from "@rcsb/rcsb-api-tools/build/RcsbSearch/SearchRequest";
 import { QueryResult } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchResultInterface";
 import { ReturnType } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchEnums";
-import { GroupNode, SearchQuery, TerminalNode } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
+import { GroupNode, ResultsContentType, SearchQuery, TerminalNode } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
 import { FacetType } from "./FacetStore/FacetMemberInterface";
 export declare type SearchQueryType = GroupNode | TerminalNode;
 declare class SearchRequestProperty {
     private readonly getClient;
     constructor(getClient: () => SearchRequest);
     private _requestFacets;
-    requestFacets(query: SearchQueryType, facets: FacetType[], returnType: ReturnType): Promise<QueryResult | null>;
+    requestFacets(query: SearchQueryType, facets: FacetType[], returnType: ReturnType, resultsContentType: ResultsContentType): Promise<QueryResult | null>;
     requestMembers(query: SearchQuery): Promise<Array<string>>;
     requestCount(query: SearchQuery): Promise<number>;
     request(query: SearchQuery): Promise<QueryResult | null>;

package/build/dist/RcsbUtils/Helpers/TagDelimiter.d.ts

@@ -5,6 +5,7 @@ export declare class TagDelimiter {
     static readonly alignmentTitle: string;
     static readonly operatorComposition: string;
     static readonly assembly: string;
+    private static rcsbEntryRegExp;
     private static rcsbEntityRegExp;
     private static rcsbInstanceRegExp;
     static parseEntity(rcsbId: string): {
@@ -16,4 +17,5 @@ export declare class TagDelimiter {
         entryId: string;
     };
     static isEntityOrInstanceId(rcsb: string): boolean;
+    static isRcsbId(rcsb: string): boolean;
 }