@rcsb/rcsb-saguaro-app 4.0.7-groups.36 → 4.0.7

package/README.md

@@ -70,7 +70,7 @@ click events.
 - A new translator class defined in `src/RcsbUtils` (e.g. `AssemblyInterfacesTranslate`)
     - The constructor gets the data collected by the above class
     - The class exposes the methods needs to provide the relationships between RCSB objects of different granularity
-- A new method in the `RcsbRequestContextManager` defined in `src/RcsbFvWeb/RcsbFvBuilder`
+- A new method in the `RcsbFvContextManager` defined in `src/RcsbFvWeb/RcsbFvBuilder`
     - This method must avoid duplicate requests
 
 Contributing

package/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface.d.ts

@@ -1,9 +1,9 @@
 import { CoreCollectorInterface } from "../CoreCollectorInterface";
 import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro";
-import { AnnotationFeatures, Feature, QueryAnnotationsArgs, QueryGroup_AnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { AnnotationFeatures, Feature, QueryAnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { AnnotationTrack, FeaturePositionGaps } from "./AnnotationTrack";
 import { ExternalTrackBuilderInterface } from "../FeatureTools/ExternalTrackBuilderInterface";
-import { PolymerEntityInstanceInterface } from "../DataCollectors/PolymerEntityInstancesCollector";
+import { PolymerEntityInstanceInterface } from "../Translators/PolymerEntityInstancesCollector";
 export declare type IncreaseAnnotationValueType = (feature: {
     type: string;
     targetId: string;
@@ -16,7 +16,7 @@ export interface AnnotationProcessingInterface {
     computeAnnotationValue?: (annotationTracks: Map<string, AnnotationTrack>) => void;
     addTrackElementCallback?: IncreaseAnnotationValueType;
 }
-export interface CommonAnnotationInterface {
+export interface CollectAnnotationsInterface extends QueryAnnotationsArgs {
     collectSwissModel?: boolean;
     rcsbContext?: Partial<PolymerEntityInstanceInterface>;
     annotationProcessing?: AnnotationProcessingInterface;
@@ -27,13 +27,9 @@ export interface CommonAnnotationInterface {
     trackTitle?(ann: AnnotationFeatures, d: Feature): Promise<string | undefined>;
     typeSuffix?(ann: AnnotationFeatures, d: Feature): Promise<string | undefined>;
 }
-export interface CollectAnnotationsInterface extends QueryAnnotationsArgs, CommonAnnotationInterface {
-}
-export interface CollectGroupAnnotationsInterface extends QueryGroup_AnnotationsArgs, CommonAnnotationInterface {
-}
-export declare type AnnotationCollectConfig = Partial<CollectAnnotationsInterface & CollectGroupAnnotationsInterface>;
+export declare type AnnotationCollectConfig = Partial<CollectAnnotationsInterface>;
 export interface AnnotationCollectorInterface extends CoreCollectorInterface {
-    collect(requestConfig: CollectAnnotationsInterface | CollectGroupAnnotationsInterface): Promise<Array<RcsbFvRowConfigInterface>>;
+    collect(requestConfig: CollectAnnotationsInterface): Promise<Array<RcsbFvRowConfigInterface>>;
     getAnnotationConfigData(): Promise<Array<RcsbFvRowConfigInterface>>;
     getAnnotationFeatures(): Promise<Array<AnnotationFeatures>>;
     getFeatures(): Promise<Array<Feature>>;

package/build/dist/RcsbCollectTools/FeatureTools/ExternalTrackBuilderInterface.d.ts

@@ -1,7 +1,7 @@
 import { RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro";
 import { AlignmentResponse, AnnotationFeatures } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { SequenceCollectorDataInterface } from "../SequenceCollector/SequenceCollector";
-import { PolymerEntityInstanceInterface } from "../DataCollectors/PolymerEntityInstancesCollector";
+import { PolymerEntityInstanceInterface } from "../Translators/PolymerEntityInstancesCollector";
 export interface ExternalTrackBuilderInterface {
     processAlignmentAndFeatures?(data: {
         annotations?: Array<AnnotationFeatures>;

package/build/dist/RcsbCollectTools/{DataCollectors → PropertyCollector}/MultipleEntryPropertyCollector.d.ts

@@ -4,13 +4,8 @@ export interface EntryPropertyIntreface {
     entryId: string;
     experimentalMethod: string;
     resolution: number;
-    name: string;
-    taxNames: Array<string>;
-    entryMolecularWeight: number;
-    description: Array<string>;
 }
 export declare class MultipleEntryPropertyCollector {
     private readonly rcsbFvQuery;
     collect(requestConfig: QueryEntriesArgs): Promise<Array<EntryPropertyIntreface>>;
-    private static getEntryProperties;
 }

package/build/dist/RcsbCollectTools/SequenceCollector/GenomeMapCollector.d.ts

@@ -1,9 +1,9 @@
+import { RcsbClient } from "../../RcsbGraphQL/RcsbClient";
 import { CollectAlignmentInterface, SequenceCollectorInterface } from "./SequenceCollectorInterface";
 import { SequenceCollectorDataInterface } from "./SequenceCollector";
 import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { AlignmentResponse } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { ExternalTrackBuilderInterface } from "../FeatureTools/ExternalTrackBuilderInterface";
-import { RcsbClient } from "../../RcsbGraphQL/RcsbClient";
 export declare class GenomeMapCollector implements SequenceCollectorInterface {
     readonly rcsbFvQuery: RcsbClient;
     collect(requestConfig: CollectAlignmentInterface, filter?: Array<string>, entityInstanceMapCollector?: (instanceIds: Array<string>) => Promise<null>): Promise<SequenceCollectorDataInterface>;

package/build/dist/RcsbCollectTools/SequenceCollector/SequenceCollectorHelper.d.ts

@@ -21,7 +21,7 @@ interface BuildSequenceDataInterface extends TranslateContextInterface {
 }
 export declare class SequenceCollectorHelper {
     private entityInstanceTranslator;
-    buildAlignments(alignmentData: BuildAlignementsInterface, dynamicDisplayFlag: boolean, tagObservedRegions: (region: AlignedRegion, commonContext: TranslateContextInterface, noQuerySequenceFlag?: boolean) => Array<AlignedObservedRegion>): {
+    buildAlignments(alignmentData: BuildAlignementsInterface, dynamicDisplayFlag: boolean, tagObservedRegions: (region: AlignedRegion, commonContext: TranslateContextInterface) => Array<AlignedObservedRegion>): {
         alignments: Array<RcsbFvRowConfigInterface>;
         targets: Array<string>;
     };

package/build/dist/RcsbCollectTools/SequenceCollector/SequenceCollectorInterface.d.ts

@@ -1,7 +1,6 @@
 import { CoreCollectorInterface } from "../CoreCollectorInterface";
 import { SequenceCollectorDataInterface } from "./SequenceCollector";
 import { AlignmentResponse, QueryAlignmentArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { RcsbQueryGroupAlignmentArguments } from "../../RcsbGraphQL/RcsbQueryAlignment";
 interface CommonAlignmentInterface {
     filterByTargetContains?: string;
     dynamicDisplay?: boolean;
@@ -11,14 +10,11 @@ interface CommonAlignmentInterface {
 }
 export interface CollectAlignmentInterface extends QueryAlignmentArgs, CommonAlignmentInterface {
 }
-export interface CollectGroupAlignmentInterface extends RcsbQueryGroupAlignmentArguments, CommonAlignmentInterface {
-    sequencePrefix: string;
-}
-export declare type AlignmentCollectConfig = Partial<CollectAlignmentInterface & CollectGroupAlignmentInterface>;
+export declare type AlignmentCollectConfig = Partial<CollectAlignmentInterface>;
 export interface SequenceCollectorInterface extends CoreCollectorInterface {
     getTargets(): Promise<Array<string>>;
     getAlignmentResponse(): Promise<AlignmentResponse>;
     getSequenceLength(): number;
-    collect(requestConfig: CollectAlignmentInterface | CollectGroupAlignmentInterface, filter?: Array<string>, entityInstanceMapCollector?: (instanceIds: Array<string>) => Promise<void>): Promise<SequenceCollectorDataInterface>;
+    collect(requestConfig: CollectAlignmentInterface, filter?: Array<string>, entityInstanceMapCollector?: (instanceIds: Array<string>) => Promise<void>): Promise<SequenceCollectorDataInterface>;
 }
 export {};

package/build/dist/RcsbCollectTools/{DataCollectors → Translators}/MultipleEntityInstancesCollector.d.ts

@@ -1,7 +1,6 @@
 import { QueryPolymer_EntitiesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
 import { PolymerEntityInstanceInterface } from "./PolymerEntityInstancesCollector";
-import { MultipleDocumentPropertyCollectorInterface } from "./DataCollectorInterface";
-export declare class MultipleEntityInstancesCollector implements MultipleDocumentPropertyCollectorInterface<"entity_ids", PolymerEntityInstanceInterface> {
+export declare class MultipleEntityInstancesCollector {
     private readonly rcsbFvQuery;
     collect(requestConfig: QueryPolymer_EntitiesArgs): Promise<Array<PolymerEntityInstanceInterface>>;
     private static getEntityInstances;

package/build/dist/RcsbCollectTools/{DataCollectors → Translators}/PolymerEntityInstancesCollector.d.ts

@@ -6,13 +6,8 @@ export interface PolymerEntityInstanceInterface {
     asymId: string;
     authId: string;
     authResId: Array<string>;
-    name: string;
-    taxNames: Array<string>;
-    experimentalMethod: string;
-    resolution: number;
-    sequenceLength: number;
-    entityMolecularWeight: number;
-    entryMolecularWeight: number;
+    names: string;
+    taxIds: Array<string>;
 }
 export declare class PolymerEntityInstancesCollector {
     private readonly rcsbFvQuery;

package/build/dist/RcsbExport/RcsbFvContextManager.d.ts

@@ -0,0 +1,4 @@
+import { InterfaceInstanceTranslate } from "../RcsbUtils/Translators/InterfaceInstanceTranslate";
+export declare class RcsbFvContextManager {
+    static getInterfaceToInstance(interfaceId: string): Promise<InterfaceInstanceTranslate>;
+}

package/build/dist/RcsbFvWeb/RcsbFvBuilder/RcsbFvContextManager.d.ts

@@ -1,13 +1,28 @@
 import { RcsbFv, RcsbFvBoardConfigInterface } from "@rcsb/rcsb-saguaro";
+import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
+import { EntryAssemblyTranslate } from "../../RcsbUtils/Translators/EntryAssemblyTranslate";
+import { PolymerEntityChromosomeTranslate } from "../../RcsbUtils/Translators/PolymerEntityChromosomeTranslate";
+import { InterfaceInstanceTranslate } from "../../RcsbUtils/Translators/InterfaceInstanceTranslate";
 declare class RcsbFvContextManager {
     private rcsbFvManager;
     private rcsbButtonManager;
+    private polymerEntityToInstanceMap;
+    private entryToAssemblyMap;
+    private interfaceToInstanceMap;
+    private assemblyInterfacesMap;
     getFv(elementFvId: string, boardConfig?: Partial<RcsbFvBoardConfigInterface>): RcsbFv;
     hasFv(elementFvId: string): boolean;
     private setFv;
     getButtonList(elementFvId: string): Set<string>;
     setButton(elementFvId: string, buttonId: string): void;
     removeFv(elementFvId: string): void;
+    private setEntityToInstance;
+    private setEntryToAssembly;
+    getEntityToInstance(entryId: string): Promise<PolymerEntityInstanceTranslate>;
+    getEntryToAssembly(entryId: string): Promise<EntryAssemblyTranslate>;
+    getEntityToChromosome(entityIds: Array<string>): Promise<PolymerEntityChromosomeTranslate>;
+    getInterfaceToInstance(interfaceId: string): Promise<InterfaceInstanceTranslate>;
+    private getAssemblyInterfaces;
 }
 export declare const rcsbFvCtxManager: RcsbFvContextManager;
 export {};

package/build/dist/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.d.ts

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { RcsbContextType, RcsbFvAdditionalConfig } from "../RcsbFvModule/RcsbFvModuleInterface";
-import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
+import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/Translators/PolymerEntityInstancesCollector";
 import { SelectOptionProps } from "../WebTools/SelectButton";
 import { RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
 export interface InstanceSequenceOnchangeInterface {

package/build/dist/RcsbFvWeb/RcsbFvBuilder/RcsbFvUniprotBuilder.d.ts

@@ -1,7 +1,7 @@
 import { RcsbFvAdditionalConfig } from "../RcsbFvModule/RcsbFvModuleInterface";
 import { RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
 export declare class RcsbFvUniprotBuilder {
-    static buildUniprotMultipleEntitySequenceFv(elementFvId: string, elementSelectId: string, upAcc: string, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
+    static buildUniprotMultipleEntitySequenceFv(elementFvId: string, elementSelectId: string, upAcc: string): Promise<RcsbFvModulePublicInterface>;
     static buildUniprotFv(elementId: string, upAcc: string, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
     static buildUniprotEntityFv(elementId: string, upAcc: string, entityId: string, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;
     static buildUniprotEntityInstanceFv(elementId: string, upAcc: string, entityId: string, instanceId: string, additionalConfig?: RcsbFvAdditionalConfig): Promise<RcsbFvModulePublicInterface>;

package/build/dist/RcsbFvWeb/RcsbFvBuilder.d.ts

@@ -1,9 +1,8 @@
-import { RcsbFvAdditionalConfig, RcsbFvModulePublicInterface } from "./RcsbFvModule/RcsbFvModuleInterface";
+import { RcsbFvAdditionalConfig } from "./RcsbFvModule/RcsbFvModuleInterface";
 import { PairwiseAlignmentInterface } from "./PairwiseAlignmentTools/PairwiseAlignmentBuilder";
 import { InstanceSequenceConfig, InstanceSequenceOnchangeInterface } from "./RcsbFvBuilder/RcsbFvInstanceBuilder";
 import { PfvBuilderInterface } from "./RcsbFvBuilder/RcsbFvProteinSequenceBuilder";
-import { SearchQuery } from "@rcsb/rcsb-api-tools/build/RcsbSearch/Types/SearchQueryInterface";
-import { GroupProvenanceId } from "@rcsb/rcsb-api-tools/build/RcsbDw/Types/DwEnums";
+import { RcsbFvModulePublicInterface } from "./RcsbFvModule/RcsbFvModuleInterface";
 export declare function unmount(elementId: string): void;
 export declare function buildMultipleAlignmentSequenceFv(elementFvId: string, elementSelectId: string, upAcc: string): Promise<RcsbFvModulePublicInterface>;
 export declare function buildEntitySummaryFv(elementFvId: string, elementSelectId: string, entityId: string): Promise<RcsbFvModulePublicInterface>;
@@ -22,4 +21,3 @@ export declare function buildFullChromosome(elementFvId: string, chrId: string):
 export declare function buildEntryChromosome(elementFvId: string, entitySelectId: string, chromosomeSelectId: string, entryId: string): Promise<RcsbFvModulePublicInterface>;
 export declare function buildEntityChromosome(elementFvId: string, elementSelectId: string, entityId: string): Promise<RcsbFvModulePublicInterface>;
 export declare function buildChromosome(elementFvId: string, entityId: string, chrId: string, elementSelectId?: string): Promise<RcsbFvModulePublicInterface>;
-export declare function buildGroupFv(elementId: string, groupProvenanceId: GroupProvenanceId, groupId: string, query?: SearchQuery, additionalConfig?: RcsbFvAdditionalConfig): void;

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts

@@ -4,7 +4,7 @@ import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/Poly
 import { SequenceCollectorInterface } from "../../RcsbCollectTools/SequenceCollector/SequenceCollectorInterface";
 import { AnnotationCollectorInterface } from "../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
 import { RcsbFvModuleBuildInterface, RcsbFvModuleInterface } from "./RcsbFvModuleInterface";
-import { AlignmentResponse, Feature } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { Feature } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 export declare abstract class RcsbFvAbstractModule implements RcsbFvModuleInterface {
     protected readonly rcsbFv: RcsbFv;
     protected readonly elementId: string;
@@ -22,7 +22,6 @@ export declare abstract class RcsbFvAbstractModule implements RcsbFvModuleInterf
     activeDisplay(): boolean;
     getFv(): RcsbFv;
     getTargets(): Promise<Array<string>>;
-    getAlignmentResponse(): Promise<AlignmentResponse>;
     getFeatures(): Promise<Array<Feature>>;
     getAnnotationConfigData(): Promise<Array<RcsbFvRowConfigInterface>>;
     updateBoardConfig(config: Partial<RcsbFvBoardConfigInterface>): void;

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface.d.ts

@@ -1,4 +1,4 @@
-import { AlignmentResponse, Feature, FilterInput, GroupReference, SequenceReference, Source } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { Feature, FilterInput, SequenceReference, Source } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { RcsbFv, RcsbFvBoardConfigInterface, RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro";
 import { PairwiseAlignmentInterface } from "../PairwiseAlignmentTools/PairwiseAlignmentBuilder";
@@ -27,15 +27,9 @@ export interface RcsbFvAdditionalConfig {
     annotationProcessing?: AnnotationProcessingInterface;
     sequenceCollector?: SequenceCollectorInterface;
     externalTrackBuilder?: ExternalTrackBuilderInterface;
-    page?: {
-        first: number;
-        after: string;
-    };
     rcsbContext?: RcsbContextType;
 }
 export interface RcsbFvModuleBuildInterface {
-    group?: GroupReference;
-    groupId?: string;
     queryId?: string;
     from?: SequenceReference;
     to?: SequenceReference;
@@ -59,7 +53,6 @@ export interface RcsbFvModuleInterface extends RcsbFvModulePublicInterface {
 }
 export interface RcsbFvModulePublicInterface {
     getTargets(): Promise<Array<string>>;
-    getAlignmentResponse(): Promise<AlignmentResponse>;
     getFeatures(): Promise<Array<Feature>>;
     getAnnotationConfigData(): Promise<Array<RcsbFvRowConfigInterface>>;
     getFv(): RcsbFv;

package/build/dist/RcsbGraphQL/RcsbClient.d.ts

@@ -1,27 +1,18 @@
-import { RcsbQueryGroupAlignmentArguments } from "./RcsbQueryAlignment";
-import { AlignmentResponse, AnnotationFeatures, QueryAlignmentArgs, QueryAnnotationsArgs, QueryGroup_AnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { CoreAssembly, CoreEntry, CoreInterface, CorePolymerEntity, QueryAssembliesArgs, GroupPolymerEntity, QueryEntriesArgs, QueryEntryArgs, QueryInterfacesArgs, QueryPolymer_EntitiesArgs, QueryPolymer_Entity_GroupArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
-declare class RcsbClientClass {
+import { AlignmentResponse, AnnotationFeatures, QueryAlignmentArgs, QueryAnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { CoreAssembly, CoreEntry, CoreInterface, CorePolymerEntity, QueryAssembliesArgs, QueryEntriesArgs, QueryEntryArgs, QueryInterfacesArgs, QueryPolymer_EntitiesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
+export declare class RcsbClient {
     private rcsbQueryAnnotations;
-    private rcsbQueryGroupAnnotations;
     private rcsbQueryAlignment;
-    private rcsbQueryGroupAlignment;
     private rcsbQueryEntityInstances;
     private rcsbQueryMutipleEntityInstances;
     private rcsbQueryEntryProperties;
     private rcsbQueryInterfaceInstances;
     private rcsbQueryAssemblyInterfaces;
     requestRcsbPdbAnnotations(requestConfig: QueryAnnotationsArgs): Promise<Array<AnnotationFeatures>>;
-    requestRcsbPdbGroupAnnotations(requestConfig: QueryGroup_AnnotationsArgs): Promise<Array<AnnotationFeatures>>;
     requestAlignment(requestConfig: QueryAlignmentArgs): Promise<AlignmentResponse>;
-    requestGroupAlignment(requestConfig: RcsbQueryGroupAlignmentArguments): Promise<AlignmentResponse>;
     requestEntityInstances(requestConfig: QueryEntryArgs): Promise<CoreEntry>;
     requestMultipleEntityInstances(requestConfig: QueryPolymer_EntitiesArgs): Promise<Array<CorePolymerEntity>>;
-    requestGroupInfo(requestConfig: QueryPolymer_Entity_GroupArgs): Promise<GroupPolymerEntity>;
     requestMultipleEntriesProperties(requestConfig: QueryEntriesArgs): Promise<Array<CoreEntry>>;
     requestInterfaceInstances(requestConfig: QueryInterfacesArgs): Promise<Array<CoreInterface>>;
     requestAssemblyInterfaces(requestConfig: QueryAssembliesArgs): Promise<Array<CoreAssembly>>;
 }
-export declare const rcsbClient: RcsbClientClass;
-export declare type RcsbClient = typeof rcsbClient;
-export {};

package/build/dist/RcsbGraphQL/RcsbQueryAlignment.d.ts

@@ -1,17 +1,7 @@
-import { AlignmentResponse, QueryAlignmentArgs, QueryGroup_AlignmentArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { AlignmentResponse, QueryAlignmentArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbCoreQueryInterface } from "./RcsbCoreQueryInterface";
 import { GraphQLRequest } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/GraphQLRequest";
 export declare class RcsbQueryAlignment implements RcsbCoreQueryInterface<QueryAlignmentArgs, AlignmentResponse> {
     readonly client: GraphQLRequest;
     request(requestConfig: QueryAlignmentArgs): Promise<AlignmentResponse>;
 }
-export declare type RcsbQueryGroupAlignmentArguments = QueryGroup_AlignmentArgs & {
-    page: {
-        first: number;
-        after: string;
-    };
-};
-export declare class RcsbQueryGroupAlignment implements RcsbCoreQueryInterface<RcsbQueryGroupAlignmentArguments, AlignmentResponse> {
-    readonly client: GraphQLRequest;
-    request(requestConfig: RcsbQueryGroupAlignmentArguments): Promise<AlignmentResponse>;
-}

package/build/dist/RcsbGraphQL/RcsbQueryAnnotations.d.ts

@@ -1,11 +1,7 @@
-import { AnnotationFeatures, QueryAnnotationsArgs, QueryGroup_AnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+import { AnnotationFeatures, QueryAnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbCoreQueryInterface } from "./RcsbCoreQueryInterface";
 import { GraphQLRequest } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/GraphQLRequest";
 export declare class RcsbQueryAnnotations implements RcsbCoreQueryInterface<QueryAnnotationsArgs, Array<AnnotationFeatures>> {
     readonly client: GraphQLRequest;
     request(requestConfig: QueryAnnotationsArgs): Promise<Array<AnnotationFeatures>>;
 }
-export declare class RcsbQueryGroupAnnotations implements RcsbCoreQueryInterface<QueryGroup_AnnotationsArgs, Array<AnnotationFeatures>> {
-    readonly client: GraphQLRequest;
-    request(requestConfig: QueryGroup_AnnotationsArgs): Promise<Array<AnnotationFeatures>>;
-}

package/build/dist/RcsbUtils/{Groups/GroupPropertiesProvider.d.ts → GroupPropertiesProvider.d.ts}

@@ -1,4 +1,4 @@
-import { EntryPropertyIntreface } from "../../RcsbCollectTools/DataCollectors/MultipleEntryPropertyCollector";
+import { EntryPropertyIntreface } from "../RcsbCollectTools/PropertyCollector/MultipleEntryPropertyCollector";
 export interface GroupPropertiesProviderInterface {
     entryProperties: Array<EntryPropertyIntreface>;
 }

package/build/dist/RcsbUtils/Translators/AssemblyInterfacesTranslate.d.ts

@@ -1,4 +1,4 @@
-import { AssemblyInterfacesInterface } from "../../RcsbCollectTools/DataCollectors/AssemblyInterfacesCollector";
+import { AssemblyInterfacesInterface } from "../../RcsbCollectTools/Translators/AssemblyInterfacesCollector";
 export declare class AssemblyInterfacesTranslate {
     private readonly rawData;
     private interfaceMap;

package/build/dist/RcsbUtils/Translators/EntryAssemblyTranslate.d.ts

@@ -1,4 +1,4 @@
-import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
+import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/Translators/PolymerEntityInstancesCollector";
 export declare class EntryAssemblyTranslate {
     private readonly rawData;
     constructor(data: Map<string, Array<PolymerEntityInstanceInterface>>);

package/build/dist/RcsbUtils/Translators/InterfaceInstanceTranslate.d.ts

@@ -1,4 +1,4 @@
-import { InterfaceInstanceInterface } from "../../RcsbCollectTools/DataCollectors/InterfaceInstanceCollector";
+import { InterfaceInstanceInterface } from "../../RcsbCollectTools/Translators/InterfaceInstanceCollector";
 export declare class InterfaceInstanceTranslate {
     private readonly rawData;
     private readonly instances;

package/build/dist/RcsbUtils/Translators/MultipleEntityInstanceTranslate.d.ts

@@ -1,5 +1,5 @@
 import { PolymerEntityInstanceTranslate } from "./PolymerEntityInstanceTranslate";
-import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
+import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/Translators/PolymerEntityInstancesCollector";
 export declare class MultipleEntityInstanceTranslate {
     private readonly entityInstanceTranslateMap;
     add(data: Array<PolymerEntityInstanceInterface>): void;

package/build/dist/RcsbUtils/Translators/PolymerEntityInstanceTranslate.d.ts

@@ -1,4 +1,4 @@
-import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/DataCollectors/PolymerEntityInstancesCollector";
+import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/Translators/PolymerEntityInstancesCollector";
 import { RcsbFvTrackDataElementInterface } from '@rcsb/rcsb-saguaro';
 import { SequenceReference, Source } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 export interface TranslateContextInterface {

package/build/dist/app.d.ts

@@ -1,5 +1,4 @@
-export { buildEntryChromosome, buildFullChromosome, buildEntityChromosome, buildChromosome, buildEntityFv, buildEntitySummaryFv, buildSingleEntitySummaryFv, buildInstanceFv, buildInstanceSequenceFv, buildMultipleInstanceSequenceFv, buildAssemblySequenceFv, buildPairwiseAlignment, buildPfv, buildMultipleAlignmentSequenceFv, buildUniprotEntityFv, buildUniprotEntityInstanceFv, buildUniprotFv, buildGroupFv, unmount } from "./RcsbFvWeb/RcsbFvBuilder";
-import { rcsbRequestCtxManager } from "./RcsbRequest/RcsbRequestContextManager";
-export { rcsbRequestCtxManager as RcsbRequestContextManager };
+export { buildEntryChromosome, buildFullChromosome, buildEntityChromosome, buildChromosome, buildEntityFv, buildEntitySummaryFv, buildSingleEntitySummaryFv, buildInstanceFv, buildInstanceSequenceFv, buildMultipleInstanceSequenceFv, buildAssemblySequenceFv, buildPairwiseAlignment, buildPfv, buildMultipleAlignmentSequenceFv, buildUniprotEntityFv, buildUniprotEntityInstanceFv, buildUniprotFv, unmount } from "./RcsbFvWeb/RcsbFvBuilder";
+export { RcsbFvContextManager } from "./RcsbExport/RcsbFvContextManager";
 export { RcsbFvUI } from "./RcsbExport/RcsbFvUI";
 export { FeatureType } from "./RcsbExport/FeatureType";