@rcsb/rcsb-saguaro-app 4.0.0-interfaces.8 → 4.0.2

package/CHANGELOG.md

@@ -2,7 +2,15 @@
 
 [Semantic Versioning](https://semver.org/)
 
-## [4.0.0-interfaces] - 2022-01-24
+## [4.0.2] - 2022-02-14
+### Dependency update
+- Multiple dependencies updated
+- 
+## [4.0.1] - 2022-02-08
+### Dependency update
+- rcsb-api-tools v2.3.1
+
+## [4.0.0] - 2022-02-08
 ###  Annotation collector improvements 
 -  Added interface `CollectAnnotationsInterface` for generating new annotations internally (not exposed)
     - `annotationGenerator?(annotations: Array<AnnotationFeatures>)` generates new annotations from the collected ones
@@ -12,9 +20,9 @@
     - New callback attribute `InstanceSequenceConfig` > `beforeChangeCallback`. This function is called when instance 
     dropdown menu changes and before rendering the new 1D RcsbFv. 
     The callback may return a `RcsbContextType` object that will be included in the `additionalConfig`
-
-## [4.0.0-master] - 2021-12-07
-### Breaking change
+- Added two new classes (`AssemblyInterfacesCollector` and `AssemblyInterfacesTranslate`) to collect and handle assembly and interface id relationships
+- Exposing all feature types in a single object `FeatureType` (file: `src/RcsbExport/FeatureType.ts`)
+- New package `RcsbExport` to expose classes and methods outside the library
 - `ExternalTrackBuilderInterface` methods return a promise and are executed asynchronous
 
 ## [3.4.0] - 2021-12-07

package/README.md

@@ -8,7 +8,7 @@ Feature Summaries. The package allows access to RCSB Saguaro methods to add or c
 <!---
 <div id="pfvSelect" ></div>  
 <div id="pfv" ></div>
-<script type="text/javascript" src="https://cdn.jsdelivr.net/npm/@rcsb/rcsb-saguaro-app@3.4.0/build/dist/app.js"></script>
+<script type="text/javascript" src="https://cdn.jsdelivr.net/npm/@rcsb/rcsb-saguaro-app@4.0.2/build/dist/app.js"></script>
 <script type="text/javascript">
 RcsbFvWebApp.buildInstanceFv("pfv", "4Z35.A", {
     boardConfig:{
@@ -23,7 +23,7 @@ RcsbFvWebApp.buildInstanceFv("pfv", "4Z35.A", {
 `npm install @rcsb/rcsb-saguaro-app`
 
 ### CDN JavaScript
-`<script src="https://cdn.jsdelivr.net/npm/@rcsb/rcsb-saguaro-app@3.4.0/build/dist/app.js" type="text/javascript"></script>`
+`<script src="https://cdn.jsdelivr.net/npm/@rcsb/rcsb-saguaro-app@4.0.2/build/dist/app.js" type="text/javascript"></script>`
 
 ### JavaScript Examples
 * [PDB Instance Chain View](https://rcsb.github.io/rcsb-saguaro-app/examples/instance.html)
@@ -49,7 +49,7 @@ click events.
 - **RcsbFvWebApp.setBoardConfig**(boardConfigData: [RcsbFvBoardConfigInterface](https://rcsb.github.io/rcsb-saguaro/interfaces/rcsbfvboardconfiginterface.html))
 - **RcsbFvWebApp.getRcsbFv**(elementId: string)
 
-###GraphQL configuration
+### GraphQL configuration
 ##### Building TypeScript interfaces
 - Files ["src/RcsbServerConfig/codegen.borrego.json", "src/RcsbServerConfig/codegen.yosemite.json"]
 - Borrego Interfaces: graphql-codegen --config src/RcsbServerConfig/codegen.borrego.json
@@ -59,6 +59,20 @@ click events.
 - Config Files: ["src/RcsbGraphQL/Queries/Borrego/.graphqlconfig", "src/RcsbGraphQL/Queries/Yosemite/.graphqlconfig"]
 - Generated Schemas: ["src/RcsbGraphQL/Queries/Borrego/schema.graphql", "src/RcsbGraphQL/Queries/Yosemite/schema.graphql"]
 
+### New RCSB data-api request method
+- A new graphql query defined in `src/RcsbGraphQL/Queries/Yosemite` (e.g. `QueryAssemblyInterfaces.graphql`)
+- A new request class using `rcsb-api-tools` defined in `src/RcsbGraphQL` (e.g. `RcsbQueryAssemblyInterfaces.ts`)
+- A new method in the `RcsbClient` class defined in `src/RcsbGraphQL/RcsbClient.ts` (e.g. `requestAssemblyInterfaces`)
+    - This method must used the request class defined above
+- A new collector class based on the request class in `src/RcsbCollectTools/Translators` (e.g. `AssemblyInterfacesCollector`)
+    - This class must call the method defined above
+    - This class may transform the RCSB data-api schema into a more convenient interface
+- A new translator class defined in `src/RcsbUtils` (e.g. `AssemblyInterfacesTranslate`)
+    - The constructor gets the data collected by the above class
+    - The class exposes the methods needs to provide the relationships between RCSB objects of different granularity
+- A new method in the `RcsbFvContextManager` defined in `src/RcsbFvWeb/RcsbFvBuilder`
+    - This method must avoid duplicate requests
+
 Contributing
 ---
 All contributions are welcome. Please, make a pull request or open an issue.

package/build/dist/RcsbAnnotationConfig/RcsbAnnotationConfig.d.ts

@@ -21,7 +21,7 @@ export declare class RcsbAnnotationConfig {
     uniprotOrder(): Array<string>;
     instanceOrder(): Array<string>;
     entityOrder(): Array<string>;
-    buildAndAddType(d: Feature, mainTitle?: string, titleSuffix?: string, typeSuffix?: string): string;
+    buildAndAddType(d: Feature, trackTitle?: string, titleSuffix?: string, typeSuffix?: string): string;
     private addNewType;
     sortAndIncludeNewTypes(): void;
     private checkAndIncludeNewType;

package/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationCollector.d.ts

@@ -1,7 +1,7 @@
 import { RcsbFvRowConfigInterface } from '@rcsb/rcsb-saguaro';
 import { AnnotationFeatures, Feature } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbClient } from "../../RcsbGraphQL/RcsbClient";
-import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/PolymerEntityInstanceTranslate";
+import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { AnnotationCollectConfig, AnnotationCollectorInterface } from "./AnnotationCollectorInterface";
 import { AnnotationConfigInterface } from "../../RcsbAnnotationConfig/AnnotationConfigInterface";
 import { ExternalTrackBuilderInterface } from "../FeatureTools/ExternalTrackBuilderInterface";

package/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationTrack.d.ts

@@ -1,6 +1,6 @@
 import { RcsbFvTrackDataElementGapInterface, RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro";
 import { Feature, FeaturePosition, SequenceReference, Source } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/PolymerEntityInstanceTranslate";
+import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { RcsbAnnotationConfigInterface } from "../../RcsbAnnotationConfig/AnnotationConfigInterface";
 import { AnnotationProcessingInterface } from "./AnnotationCollectorInterface";
 export interface FeaturePositionGaps extends FeaturePosition {

package/build/dist/RcsbCollectTools/AnnotationCollector/AnnotationTrackManager.d.ts

@@ -1,7 +1,7 @@
 import { AnnotationTrack } from "./AnnotationTrack";
 import { AnnotationFeatures } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbAnnotationConfig } from "../../RcsbAnnotationConfig/RcsbAnnotationConfig";
-import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/PolymerEntityInstanceTranslate";
+import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { AnnotationCollectConfig } from "./AnnotationCollectorInterface";
 export declare class AnnotationTrackManager {
     private readonly rcsbAnnotationConfig;
@@ -12,8 +12,8 @@ export declare class AnnotationTrackManager {
     getAnnotationTracks(): Map<string, AnnotationTrack>;
     private getPolymerEntityInstanceTranslator;
     setPolymerEntityInstanceTranslator(p: PolymerEntityInstanceTranslate): void;
-    private mergeTracks;
-    private buildType;
     private addAnnotationToTracks;
     private addFeature;
+    private buildType;
+    private mergeTracks;
 }

package/build/dist/RcsbCollectTools/CoreCollectorInterface.d.ts

@@ -1,4 +1,4 @@
-import { PolymerEntityInstanceTranslate } from "../RcsbUtils/PolymerEntityInstanceTranslate";
+import { PolymerEntityInstanceTranslate } from "../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { RcsbClient } from "../RcsbGraphQL/RcsbClient";
 import { ExternalTrackBuilderInterface } from "./FeatureTools/ExternalTrackBuilderInterface";
 export interface CoreCollectorInterface {

package/build/dist/RcsbCollectTools/SequenceCollector/GenomeMapCollector.d.ts

@@ -1,7 +1,7 @@
 import { RcsbClient } from "../../RcsbGraphQL/RcsbClient";
 import { CollectAlignmentInterface, SequenceCollectorInterface } from "./SequenceCollectorInterface";
 import { SequenceCollectorDataInterface } from "./SequenceCollector";
-import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/PolymerEntityInstanceTranslate";
+import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { AlignmentResponse } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { ExternalTrackBuilderInterface } from "../FeatureTools/ExternalTrackBuilderInterface";
 export declare class GenomeMapCollector implements SequenceCollectorInterface {

package/build/dist/RcsbCollectTools/SequenceCollector/ObservedSequenceCollector.d.ts

@@ -1,6 +1,6 @@
 import { AlignmentResponse } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { SequenceCollectorDataInterface } from "./SequenceCollector";
-import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/PolymerEntityInstanceTranslate";
+import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { RcsbClient } from "../../RcsbGraphQL/RcsbClient";
 import { AlignmentCollectConfig, SequenceCollectorInterface } from "./SequenceCollectorInterface";
 import { ExternalTrackBuilderInterface } from "../FeatureTools/ExternalTrackBuilderInterface";

package/build/dist/RcsbCollectTools/SequenceCollector/SequenceCollector.d.ts

@@ -1,6 +1,6 @@
 import { RcsbFvRowConfigInterface } from '@rcsb/rcsb-saguaro';
 import { AlignedRegion, AlignmentResponse } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { PolymerEntityInstanceTranslate, TranslateContextInterface } from "../../RcsbUtils/PolymerEntityInstanceTranslate";
+import { PolymerEntityInstanceTranslate, TranslateContextInterface } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { RcsbClient } from "../../RcsbGraphQL/RcsbClient";
 import { AlignmentCollectConfig, SequenceCollectorInterface } from "./SequenceCollectorInterface";
 import { ExternalTrackBuilderInterface } from "../FeatureTools/ExternalTrackBuilderInterface";

package/build/dist/RcsbCollectTools/SequenceCollector/SequenceCollectorHelper.d.ts

@@ -1,4 +1,4 @@
-import { PolymerEntityInstanceTranslate, TranslateContextInterface } from "../../RcsbUtils/PolymerEntityInstanceTranslate";
+import { PolymerEntityInstanceTranslate, TranslateContextInterface } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { AlignedRegion, SequenceReference, TargetAlignment } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 import { RcsbFvLink, RcsbFvRowConfigInterface, RcsbFvTrackDataElementInterface } from "@rcsb/rcsb-saguaro";
 import { AlignedObservedRegion } from "./SequenceCollector";

package/build/dist/RcsbCollectTools/Translators/AssemblyInterfacesCollector.d.ts

@@ -0,0 +1,9 @@
+import { QueryAssembliesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
+export interface AssemblyInterfacesInterface {
+    rcsbId: string;
+    interfaceIds: Array<string>;
+}
+export declare class AssemblyInterfacesCollector {
+    private readonly rcsbFvQuery;
+    collect(requestConfig: QueryAssembliesArgs): Promise<Array<AssemblyInterfacesInterface>>;
+}

package/build/dist/RcsbExport/FeatureType.d.ts

@@ -0,0 +1,10 @@
+import { Type } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+declare const ExtendedTypes: {
+    BurialFraction: Type;
+    BuriedResidues: Type;
+};
+declare type MergedType = typeof Type & typeof ExtendedTypes;
+declare const MergedType: MergedType;
+declare type FeatureType = typeof MergedType;
+export declare const FeatureType: FeatureType;
+export {};

package/build/dist/RcsbExport/RcsbFvContextManager.d.ts

@@ -0,0 +1,4 @@
+import { InterfaceInstanceTranslate } from "../RcsbUtils/Translators/InterfaceInstanceTranslate";
+export declare class RcsbFvContextManager {
+    static getInterfaceToInstance(interfaceId: string): Promise<InterfaceInstanceTranslate>;
+}

package/build/dist/RcsbExport/RcsbFvUI.d.ts

@@ -0,0 +1,7 @@
+import { GroupedOptionsInterface, SelectOptionInterface } from "../RcsbFvWeb/WebTools/SelectButton";
+import { SelectButtonConfigInterface } from "../RcsbFvWeb/WebTools/WebToolsManager";
+export declare class RcsbFvUI {
+    static clearSelectButton(elementFvId: string, selectButtonId: string): void;
+    static createSelectButton(elementFvId: string, selectButtonId: string, options: Array<SelectOptionInterface> | Array<GroupedOptionsInterface>, config?: SelectButtonConfigInterface): void;
+    static addSelectButton(elementFvId: string, selectButtonId: string, options: Array<SelectOptionInterface>, config?: SelectButtonConfigInterface): void;
+}

package/build/dist/RcsbFvWeb/RcsbFvBuilder/RcsbFvContextManager.d.ts

@@ -1,14 +1,15 @@
 import { RcsbFv, RcsbFvBoardConfigInterface } from "@rcsb/rcsb-saguaro";
-import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/PolymerEntityInstanceTranslate";
-import { EntryAssemblyTranslate } from "../../RcsbUtils/EntryAssemblyTranslate";
-import { PolymerEntityChromosomeTranslate } from "../../RcsbUtils/PolymerEntityChromosomeTranslate";
-import { InterfaceInstanceTranslate } from "../../RcsbUtils/InterfaceInstanceTranslate";
+import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
+import { EntryAssemblyTranslate } from "../../RcsbUtils/Translators/EntryAssemblyTranslate";
+import { PolymerEntityChromosomeTranslate } from "../../RcsbUtils/Translators/PolymerEntityChromosomeTranslate";
+import { InterfaceInstanceTranslate } from "../../RcsbUtils/Translators/InterfaceInstanceTranslate";
 declare class RcsbFvContextManager {
     private rcsbFvManager;
     private rcsbButtonManager;
     private polymerEntityToInstanceMap;
     private entryToAssemblyMap;
     private interfaceToInstanceMap;
+    private assemblyInterfacesMap;
     getFv(elementFvId: string, boardConfig?: Partial<RcsbFvBoardConfigInterface>): RcsbFv;
     hasFv(elementFvId: string): boolean;
     private setFv;
@@ -21,6 +22,7 @@ declare class RcsbFvContextManager {
     getEntryToAssembly(entryId: string): Promise<EntryAssemblyTranslate>;
     getEntityToChromosome(entityIds: Array<string>): Promise<PolymerEntityChromosomeTranslate>;
     getInterfaceToInstance(interfaceId: string): Promise<InterfaceInstanceTranslate>;
+    private getAssemblyInterfaces;
 }
 export declare const rcsbFvCtxManager: RcsbFvContextManager;
 export {};

package/build/dist/RcsbFvWeb/RcsbFvBuilder/RcsbFvCoreBuilder.d.ts

@@ -1,4 +1,4 @@
-import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/PolymerEntityInstanceTranslate";
+import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { RcsbFv } from "@rcsb/rcsb-saguaro";
 import { RcsbFvModuleBuildInterface, RcsbFvModuleInterface, RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
 import { SelectButtonConfigInterface } from "../WebTools/WebToolsManager";

package/build/dist/RcsbFvWeb/RcsbFvBuilder/RcsbFvInstanceBuilder.d.ts

@@ -3,7 +3,7 @@ import { RcsbContextType, RcsbFvAdditionalConfig } from "../RcsbFvModule/RcsbFvM
 import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/Translators/PolymerEntityInstancesCollector";
 import { OptionPropsInterface } from "../WebTools/SelectButton";
 import { RcsbFvModulePublicInterface } from "../RcsbFvModule/RcsbFvModuleInterface";
-import { OptionProps } from "react-select/src/components/Option";
+import { OptionProps } from "react-select/dist/declarations/src/components/Option";
 export interface InstanceSequenceOnchangeInterface {
     pdbId: string;
     authId: string;

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvAbstractModule.d.ts

@@ -1,6 +1,6 @@
 import { RcsbFv, RcsbFvBoardConfigInterface, RcsbFvRowConfigInterface } from '@rcsb/rcsb-saguaro';
 import { SequenceCollectorDataInterface } from "../../RcsbCollectTools/SequenceCollector/SequenceCollector";
-import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/PolymerEntityInstanceTranslate";
+import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { SequenceCollectorInterface } from "../../RcsbCollectTools/SequenceCollector/SequenceCollectorInterface";
 import { AnnotationCollectorInterface } from "../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";
 import { RcsbFvModuleBuildInterface, RcsbFvModuleInterface } from "./RcsbFvModuleInterface";

package/build/dist/RcsbFvWeb/RcsbFvModule/RcsbFvModuleInterface.d.ts

@@ -1,5 +1,5 @@
 import { Feature, FilterInput, SequenceReference, Source } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/PolymerEntityInstanceTranslate";
+import { PolymerEntityInstanceTranslate } from "../../RcsbUtils/Translators/PolymerEntityInstanceTranslate";
 import { RcsbFv, RcsbFvBoardConfigInterface, RcsbFvRowConfigInterface } from "@rcsb/rcsb-saguaro";
 import { PairwiseAlignmentInterface } from "../PairwiseAlignmentTools/PairwiseAlignmentBuilder";
 import { AnnotationProcessingInterface } from "../../RcsbCollectTools/AnnotationCollector/AnnotationCollectorInterface";

package/build/dist/RcsbFvWeb/WebTools/SelectButton.d.ts

@@ -1,17 +1,9 @@
 import * as React from "react";
-import { OptionProps } from "react-select/src/components/Option";
+import { OptionProps } from "react-select";
 export interface GroupedOptionsInterface {
     options: Array<SelectOptionInterface>;
     label: string;
 }
-export interface SelectOptionInterface {
-    optId?: string;
-    label: string;
-    groupLabel?: string;
-    name?: string;
-    shortLabel?: string;
-    onChange: () => void;
-}
 interface SelectButtonInterface {
     elementId: string;
     options?: Array<SelectOptionInterface> | Array<GroupedOptionsInterface>;
@@ -20,9 +12,17 @@ interface SelectButtonInterface {
     defaultValue?: string | undefined | null;
     width?: number;
     dropdownTitle?: string;
-    optionProps?: (props: OptionProps<OptionPropsInterface>) => JSX.Element;
+    optionProps?: (props: OptionProps<OptionPropsInterface, false, null>) => JSX.Element;
     isAdditionalButton?: boolean;
 }
+export interface SelectOptionInterface {
+    optId?: string;
+    groupLabel?: string;
+    name?: string;
+    shortLabel?: string;
+    label: string;
+    onChange: () => void;
+}
 export interface OptionPropsInterface extends SelectOptionInterface {
     value: number;
 }

package/build/dist/RcsbFvWeb/WebTools/WebToolsManager.d.ts

@@ -1,6 +1,6 @@
 /// <reference types="react" />
 import { GroupedOptionsInterface, OptionPropsInterface, SelectOptionInterface } from "./SelectButton";
-import { OptionProps } from "react-select/src/components/Option";
+import { OptionProps } from "react-select/dist/declarations/src/components/Option";
 export interface SelectButtonConfigInterface {
     addTitle?: boolean;
     defaultValue?: string | undefined | null;

package/build/dist/RcsbGraphQL/RcsbClient.d.ts

@@ -1,5 +1,5 @@
 import { AlignmentResponse, AnnotationFeatures, QueryAlignmentArgs, QueryAnnotationsArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
-import { CoreEntry, CoreInterface, CorePolymerEntity, QueryEntriesArgs, QueryEntryArgs, QueryInterfacesArgs, QueryPolymer_EntitiesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
+import { CoreAssembly, CoreEntry, CoreInterface, CorePolymerEntity, QueryAssembliesArgs, QueryEntriesArgs, QueryEntryArgs, QueryInterfacesArgs, QueryPolymer_EntitiesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
 export declare class RcsbClient {
     private rcsbQueryAnnotations;
     private rcsbQueryAlignment;
@@ -7,10 +7,12 @@ export declare class RcsbClient {
     private rcsbQueryMutipleEntityInstances;
     private rcsbQueryEntryProperties;
     private rcsbQueryInterfaceInstances;
+    private rcsbQueryAssemblyInterfaces;
     requestRcsbPdbAnnotations(requestConfig: QueryAnnotationsArgs): Promise<Array<AnnotationFeatures>>;
     requestAlignment(requestConfig: QueryAlignmentArgs): Promise<AlignmentResponse>;
     requestEntityInstances(requestConfig: QueryEntryArgs): Promise<CoreEntry>;
     requestMultipleEntityInstances(requestConfig: QueryPolymer_EntitiesArgs): Promise<Array<CorePolymerEntity>>;
     requestMultipleEntriesProperties(requestConfig: QueryEntriesArgs): Promise<Array<CoreEntry>>;
     requestInterfaceInstances(requestConfig: QueryInterfacesArgs): Promise<Array<CoreInterface>>;
+    requestAssemblyInterfaces(requestConfig: QueryAssembliesArgs): Promise<Array<CoreAssembly>>;
 }

package/build/dist/RcsbGraphQL/RcsbQueryAssemblyInterfaces.d.ts

@@ -0,0 +1,7 @@
+import { RcsbCoreQueryInterface } from "./RcsbCoreQueryInterface";
+import { CoreAssembly, QueryAssembliesArgs } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Yosemite/GqlTypes";
+import { GraphQLRequest } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/GraphQLRequest";
+export declare class RcsbQueryAssemblyInterfaces implements RcsbCoreQueryInterface<QueryAssembliesArgs, Array<CoreAssembly>> {
+    readonly client: GraphQLRequest;
+    request(requestConfig: QueryAssembliesArgs): Promise<Array<CoreAssembly>>;
+}

package/build/dist/RcsbUtils/AnnotationGenerators/BurialFraction.d.ts

@@ -0,0 +1,3 @@
+import { AnnotationFeatures } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+export declare function burialFraction(annotations: Array<AnnotationFeatures>): Array<AnnotationFeatures>;
+export declare function burialFractionFilter(annotations: Array<AnnotationFeatures>): Array<AnnotationFeatures>;

package/build/dist/RcsbUtils/AnnotationGenerators/BuriedResidues.d.ts

@@ -0,0 +1,3 @@
+import { AnnotationFeatures } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
+export declare function buriedResidues(annotations: Array<AnnotationFeatures>): Array<AnnotationFeatures>;
+export declare function buriedResiduesFilter(annotations: Array<AnnotationFeatures>): Array<AnnotationFeatures>;

package/build/dist/RcsbUtils/TagDelimiter.d.ts

@@ -4,4 +4,5 @@ export declare class TagDelimiter {
     static readonly sequenceTitle: string;
     static readonly alignmentTitle: string;
     static readonly operatorComposition: string;
+    static readonly assembly: string;
 }

package/build/dist/RcsbUtils/Translators/AssemblyInterfacesTranslate.d.ts

@@ -0,0 +1,7 @@
+import { AssemblyInterfacesInterface } from "../../RcsbCollectTools/Translators/AssemblyInterfacesCollector";
+export declare class AssemblyInterfacesTranslate {
+    private readonly rawData;
+    private interfaceMap;
+    constructor(data: Array<AssemblyInterfacesInterface>);
+    getInterfaces(assemblyId: string): Array<string>;
+}

package/build/dist/RcsbUtils/{EntryAssemblyTranslate.d.ts → Translators/EntryAssemblyTranslate.d.ts}

@@ -1,4 +1,4 @@
-import { PolymerEntityInstanceInterface } from "../RcsbCollectTools/Translators/PolymerEntityInstancesCollector";
+import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/Translators/PolymerEntityInstancesCollector";
 export declare class EntryAssemblyTranslate {
     private readonly rawData;
     constructor(data: Map<string, Array<PolymerEntityInstanceInterface>>);

package/build/dist/RcsbUtils/{InterfaceInstanceTranslate.d.ts → Translators/InterfaceInstanceTranslate.d.ts}

@@ -1,4 +1,4 @@
-import { InterfaceInstanceInterface } from "../RcsbCollectTools/Translators/InterfaceInstanceCollector";
+import { InterfaceInstanceInterface } from "../../RcsbCollectTools/Translators/InterfaceInstanceCollector";
 export declare class InterfaceInstanceTranslate {
     private readonly rawData;
     private readonly instances;

package/build/dist/RcsbUtils/{MultipleEntityInstanceTranslate.d.ts → Translators/MultipleEntityInstanceTranslate.d.ts}

@@ -1,5 +1,5 @@
 import { PolymerEntityInstanceTranslate } from "./PolymerEntityInstanceTranslate";
-import { PolymerEntityInstanceInterface } from "../RcsbCollectTools/Translators/PolymerEntityInstancesCollector";
+import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/Translators/PolymerEntityInstancesCollector";
 export declare class MultipleEntityInstanceTranslate {
     private readonly entityInstanceTranslateMap;
     add(data: Array<PolymerEntityInstanceInterface>): void;

package/build/dist/RcsbUtils/{PolymerEntityInstanceTranslate.d.ts → Translators/PolymerEntityInstanceTranslate.d.ts}

@@ -1,4 +1,4 @@
-import { PolymerEntityInstanceInterface } from "../RcsbCollectTools/Translators/PolymerEntityInstancesCollector";
+import { PolymerEntityInstanceInterface } from "../../RcsbCollectTools/Translators/PolymerEntityInstancesCollector";
 import { RcsbFvTrackDataElementInterface } from '@rcsb/rcsb-saguaro';
 import { SequenceReference, Source } from "@rcsb/rcsb-api-tools/build/RcsbGraphQL/Types/Borrego/GqlTypes";
 export interface TranslateContextInterface {

package/build/dist/app.d.ts

@@ -1,12 +1,4 @@
-import { GroupedOptionsInterface, SelectOptionInterface } from "./RcsbFvWeb/WebTools/SelectButton";
 export { buildEntryChromosome, buildFullChromosome, buildEntityChromosome, buildChromosome, buildEntityFv, buildEntitySummaryFv, buildSingleEntitySummaryFv, buildInstanceFv, buildInstanceSequenceFv, buildMultipleInstanceSequenceFv, buildAssemblySequenceFv, buildPairwiseAlignment, buildPfv, buildMultipleAlignmentSequenceFv, buildUniprotEntityFv, buildUniprotEntityInstanceFv, buildUniprotFv, unmount } from "./RcsbFvWeb/RcsbFvBuilder";
-import { SelectButtonConfigInterface } from "./RcsbFvWeb/WebTools/WebToolsManager";
-import { InterfaceInstanceTranslate } from "./RcsbUtils/InterfaceInstanceTranslate";
-export declare class RcsbFvUI {
-    static clearSelectButton(elementFvId: string, selectButtonId: string): void;
-    static createSelectButton(elementFvId: string, selectButtonId: string, options: Array<SelectOptionInterface> | Array<GroupedOptionsInterface>, config?: SelectButtonConfigInterface): void;
-    static addSelectButton(elementFvId: string, selectButtonId: string, options: Array<SelectOptionInterface>, config?: SelectButtonConfigInterface): void;
-}
-export declare class RcsbFvContextManager {
-    static getInterfaceToInstance(interfaceId: string): Promise<InterfaceInstanceTranslate>;
-}
+export { RcsbFvContextManager } from "./RcsbExport/RcsbFvContextManager";
+export { RcsbFvUI } from "./RcsbExport/RcsbFvUI";
+export { FeatureType } from "./RcsbExport/FeatureType";