@rbalchii/anchor-engine 4.7.0 → 4.8.1

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Files changed (141) hide show
  1. package/LICENSE +608 -608
  2. package/README.md +513 -317
  3. package/anchor.bat +5 -5
  4. package/docs/AGENT_CONTROLLED_ENGINE.md +581 -0
  5. package/docs/API.md +314 -314
  6. package/docs/DEPLOYMENT.md +448 -448
  7. package/docs/INDEX.md +226 -226
  8. package/docs/MD_FILES_INVENTORY.md +166 -0
  9. package/docs/STAR_Whitepaper_Executive.md +216 -216
  10. package/docs/TROUBLESHOOTING.md +535 -535
  11. package/docs/arxiv/BIBLIOGRAPHY.bib +145 -145
  12. package/docs/arxiv/RELATED_WORK.tex +38 -38
  13. package/docs/arxiv/compile.bat +48 -48
  14. package/docs/arxiv/joss_response.md +32 -32
  15. package/docs/arxiv/prepare-submission.bat +46 -46
  16. package/docs/arxiv/review.md +127 -127
  17. package/docs/arxiv/star-whitepaper.tex +656 -656
  18. package/docs/code-patterns.md +289 -289
  19. package/docs/daily/TODAY_SUMMARY.md +245 -0
  20. package/docs/guides/BUILDING.md +64 -0
  21. package/docs/guides/INSTALL_NPM.md +160 -0
  22. package/docs/guides/NPM_PUBLISH_SUMMARY.md +231 -0
  23. package/docs/paper.md +124 -0
  24. package/docs/project/PROJECT_STATE_ASSESSMENT.md +312 -0
  25. package/docs/reviews/code-review-v4.8.1-decision-record.md +165 -0
  26. package/docs/testing/TESTING.md +213 -0
  27. package/docs/testing/TESTING_FRAMEWORK_COMPLETE.md +271 -0
  28. package/docs/testing/search-test-report.md +76 -0
  29. package/docs/whitepaper.md +445 -445
  30. package/engine/dist/commands/distill.js +21 -21
  31. package/engine/dist/config/index.d.ts +7 -0
  32. package/engine/dist/config/index.d.ts.map +1 -1
  33. package/engine/dist/config/index.js +22 -0
  34. package/engine/dist/config/index.js.map +1 -1
  35. package/engine/dist/config/paths.d.ts +1 -1
  36. package/engine/dist/config/paths.js +3 -3
  37. package/engine/dist/config/paths.js.map +1 -1
  38. package/engine/dist/core/db.js +131 -131
  39. package/engine/dist/mcp/server.d.ts +44 -0
  40. package/engine/dist/mcp/server.d.ts.map +1 -0
  41. package/engine/dist/mcp/server.js +427 -0
  42. package/engine/dist/mcp/server.js.map +1 -0
  43. package/engine/dist/native/index.d.ts +20 -21
  44. package/engine/dist/native/index.d.ts.map +1 -1
  45. package/engine/dist/profiling/atomization-profiling.js +3 -3
  46. package/engine/dist/profiling/bottleneck-identification.js +35 -35
  47. package/engine/dist/profiling/content-sanitization-profiling.js +86 -86
  48. package/engine/dist/routes/monitoring.js +8 -8
  49. package/engine/dist/routes/v1/admin.js +8 -8
  50. package/engine/dist/routes/v1/atoms.js +15 -15
  51. package/engine/dist/routes/v1/ingest.d.ts.map +1 -1
  52. package/engine/dist/routes/v1/ingest.js +39 -0
  53. package/engine/dist/routes/v1/ingest.js.map +1 -1
  54. package/engine/dist/routes/v1/system.d.ts.map +1 -1
  55. package/engine/dist/routes/v1/system.js +305 -6
  56. package/engine/dist/routes/v1/system.js.map +1 -1
  57. package/engine/dist/routes/v1/tags.js +2 -2
  58. package/engine/dist/services/backup/backup-restore.js +23 -23
  59. package/engine/dist/services/backup/backup.js +14 -14
  60. package/engine/dist/services/distillation/radial-distiller.d.ts +1 -0
  61. package/engine/dist/services/distillation/radial-distiller.d.ts.map +1 -1
  62. package/engine/dist/services/distillation/radial-distiller.js +23 -16
  63. package/engine/dist/services/distillation/radial-distiller.js.map +1 -1
  64. package/engine/dist/services/ingest/github-ingest-service.js +18 -18
  65. package/engine/dist/services/ingest/ingest-atomic.js +79 -79
  66. package/engine/dist/services/ingest/ingest.d.ts.map +1 -1
  67. package/engine/dist/services/ingest/ingest.js +28 -25
  68. package/engine/dist/services/ingest/ingest.js.map +1 -1
  69. package/engine/dist/services/ingest/watchdog.d.ts.map +1 -1
  70. package/engine/dist/services/ingest/watchdog.js +14 -24
  71. package/engine/dist/services/ingest/watchdog.js.map +1 -1
  72. package/engine/dist/services/llm/reader.js +9 -9
  73. package/engine/dist/services/mirror/mirror.js +5 -5
  74. package/engine/dist/services/mirror/mirror.js.map +1 -1
  75. package/engine/dist/services/research/researcher.js +8 -8
  76. package/engine/dist/services/scribe/scribe.js +27 -27
  77. package/engine/dist/services/search/context-inflator.js +34 -34
  78. package/engine/dist/services/search/explore.js +20 -20
  79. package/engine/dist/services/search/physics-tag-walker.js +208 -208
  80. package/engine/dist/services/search/query-parser.js +5 -5
  81. package/engine/dist/services/search/search-utils.js +3 -3
  82. package/engine/dist/services/search/search.js +36 -36
  83. package/engine/dist/services/search/sovereign-system-prompt.js +22 -22
  84. package/engine/dist/services/semantic/semantic-ingestion-service.js +47 -47
  85. package/engine/dist/services/semantic/semantic-search.js +21 -21
  86. package/engine/dist/services/synonyms/auto-synonym-generator.js +35 -35
  87. package/engine/dist/services/system-status.d.ts +34 -0
  88. package/engine/dist/services/system-status.d.ts.map +1 -1
  89. package/engine/dist/services/system-status.js +57 -1
  90. package/engine/dist/services/system-status.js.map +1 -1
  91. package/engine/dist/services/tags/discovery.js +5 -5
  92. package/engine/dist/services/tags/infector.js +6 -6
  93. package/engine/dist/services/tags/tag-auditor.js +51 -51
  94. package/engine/dist/services/taxonomy/taxonomy-manager.js +6 -6
  95. package/engine/dist/utils/tag-cleanup.js +5 -5
  96. package/engine/dist/utils/tag-modulation.js +1 -1
  97. package/engine/dist/utils/tag-modulation.js.map +1 -1
  98. package/engine/package.json +104 -105
  99. package/mcp-server/README.md +404 -0
  100. package/mcp-server/dist/index.d.ts +16 -0
  101. package/mcp-server/dist/index.d.ts.map +1 -0
  102. package/mcp-server/dist/index.js +709 -0
  103. package/mcp-server/dist/index.js.map +1 -0
  104. package/mcp-server/package.json +34 -0
  105. package/package.json +10 -2
  106. package/docs/archive/GIT_BACKUP_VERIFICATION.md +0 -297
  107. package/docs/archive/adoption-guide.md +0 -264
  108. package/docs/archive/adoption-preparation.md +0 -179
  109. package/docs/archive/agent-harness-integration.md +0 -227
  110. package/docs/archive/api-reference.md +0 -106
  111. package/docs/archive/api_flows_diagram.md +0 -118
  112. package/docs/archive/architecture.md +0 -410
  113. package/docs/archive/architecture_diagram.md +0 -174
  114. package/docs/archive/broader-adoption-preparation.md +0 -175
  115. package/docs/archive/browser-paradigm-architecture.md +0 -163
  116. package/docs/archive/chat-integration.md +0 -124
  117. package/docs/archive/community-adoption-materials.md +0 -103
  118. package/docs/archive/community-adoption.md +0 -147
  119. package/docs/archive/comparison-with-siloed-solutions.md +0 -192
  120. package/docs/archive/comprehensive-docs.md +0 -156
  121. package/docs/archive/data_flow_diagram.md +0 -251
  122. package/docs/archive/enhancement-implementation-summary.md +0 -146
  123. package/docs/archive/evolution-summary.md +0 -141
  124. package/docs/archive/ingestion_pipeline_diagram.md +0 -198
  125. package/docs/archive/native-module-profiling-results.md +0 -135
  126. package/docs/archive/positioning-document.md +0 -158
  127. package/docs/archive/positioning.md +0 -175
  128. package/docs/archive/query-builder-documentation.md +0 -218
  129. package/docs/archive/quick-reference.md +0 -40
  130. package/docs/archive/quickstart.md +0 -63
  131. package/docs/archive/relationship-narrative-discovery.md +0 -141
  132. package/docs/archive/search-logic-improvement-plan.md +0 -336
  133. package/docs/archive/search_architecture_diagram.md +0 -212
  134. package/docs/archive/semantic-architecture-guide.md +0 -97
  135. package/docs/archive/sequence-diagrams.md +0 -128
  136. package/docs/archive/system_components_diagram.md +0 -296
  137. package/docs/archive/test-framework-integration.md +0 -109
  138. package/docs/archive/testing-framework-documentation.md +0 -397
  139. package/docs/archive/testing-framework-summary.md +0 -121
  140. package/docs/archive/testing-framework.md +0 -377
  141. package/docs/archive/ui-architecture.md +0 -75
package/docs/paper.md ADDED
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+ ---
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+ title: 'STAR: Semantic Temporal Associative Retrieval - A Local-First Graph-Based Context Engine'
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+ tags:
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+ - information retrieval
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+ - graph algorithms
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+ - local-first AI
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+ - personal knowledge management
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+ - sparse retrieval
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+ authors:
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+ - name: R.S. Balch II
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+ affiliation: '1'
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+ orcid: 0009-0001-0476-1689
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+ affiliations:
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+ - name: Independent Researcher, New Mexico Tech Affiliated
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+ index: 1
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+ date: 18 March 2026
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+ bibliography: paper.bib
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+ ---
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+
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+ # Summary
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+
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+ STAR (Semantic Temporal Associative Retrieval) is a local-first, graph-based information retrieval system designed to enable resource-constrained devices to navigate large-scale personal knowledge corpora. Unlike traditional dense vector retrieval systems that require loading complete indices into RAM, STAR implements a sparse bipartite graph approach that retrieves only relevant "atoms" of information required for a given query.
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+
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+ The system uses a physics-inspired scoring model combining three factors multiplicatively: semantic co-occurrence (shared tags), temporal decay (recent memories weighted higher), and structural similarity (SimHash fingerprint proximity). This multiplicative approach ensures any zero factor eliminates irrelevant results, providing precise, explainable retrieval.
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+
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+ STAR has been production-validated on a 28-million-token corpus of chat history and personal documents, achieving sub-200ms query latency on 4GB RAM consumer hardware without GPU acceleration. The browser paradigm architecture—treating AI memory like web browsers treat the internet—enables universal deployment from $200 laptops to supercomputers.
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+
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+ # Statement of Need
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+
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+ Current Retrieval-Augmented Generation (RAG) systems for AI memory require high-specification servers with GPUs and substantial RAM, creating a barrier for individual researchers and resource-constrained environments. Personal AI memory is often locked behind cloud subscriptions or enterprise infrastructure.
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+
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+ STAR addresses this gap with a sparse graph retrieval system that runs on consumer hardware (4GB RAM, CPU-only), operates locally without cloud dependencies, provides explainable results via tag paths, and scales linearly with O(k·d̄) complexity versus O(n) for dense vector approaches. The system enables researchers, developers, and privacy-conscious users to navigate large-scale personal knowledge corpora on standard laptops.
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+
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+ # State of the Field
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+
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+ ## Dense Vector and Graph-Based Retrieval
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+
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+ Systems like HNSW [@malkov2018efficient] and FAISS [@johnson2019billion] represent state-of-the-art approximate nearest neighbor search but require loading complete vector indices into RAM (4-8GB for modest corpora), restricting deployment to high-specification servers and providing limited explainability. Recent graph-based memory systems like TOBUGraph [@tobugraph2024] and Mem0 [@mem02025] explore alternative structures, often relying on LLM-based extractions or dense embeddings. In contrast, STAR introduces a deterministic, physics-inspired multiplicative scoring model (the Unified Field Equation) that prioritizes resource-constrained, local-first environments (operating on CPU-only, 4GB RAM footprints) and provides native explainability through explicit tag paths.
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+
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+ STAR contributes a complete, deployed system with validated performance on 25M tokens of real-world data. The bipartite graph approach (Atoms × Tags) enforces strict separation between content and metadata, enabling O(1) per-atom deduplication lookups via SimHash [@charikar2002similar] and disposable index architectures.
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+
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+ | Method | Time Complexity | Space Complexity | Explainability | Hardware |
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+ |--------|----------------|------------------|----------------|----------|
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+ | **Dense Vector ANN (HNSW)** | $O(\log n)$ query; $O(n \log n)$ build | $O(n \cdot d)$ | Opaque | GPU preferred |
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+ | **STAR (Sparse Graph)** | **$O(k \cdot \bar{d})$** | **$O(|E|)$** | **Native (tag paths)** | **CPU-only** |
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+
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+ Where $n$ = total atoms, $k$ = query tags (typically 5–20), $\bar{d}$ = average tag degree (typically 10–100), $d$ = vector dimension (typically 768–1536), and $|E|$ = sparse edges (typically $10 \cdot n$). For personal knowledge graphs, $k \cdot \bar{d} \ll n$, making STAR asymptotically faster than dense retrieval.
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+
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+ ## Personal AI Memory and Novel Contribution
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+
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+ Second Me [@wei2025second] proposes LLM-based memory parameterization requiring significant computational resources. STAR achieves similar associative retrieval through deterministic physics-based scoring, enabling deployment on minimal hardware. Existing sparse retrieval libraries (Lucene, Terrier) focus on traditional keyword search without temporal decay modeling, graph-based associative traversal, SimHash deduplication, or byte-offset lazy loading. STAR's unified field equation combining semantic, temporal, and structural factors in a multiplicative scoring model represents a novel contribution not present in existing packages.
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+
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+ # Software Design
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+
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+ ## Architecture and Data Model
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+
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+ STAR implements the "Browser Paradigm" for AI memory: just as browsers render websites by loading only necessary shards, STAR retrieves only relevant atoms required for the current query. The architecture uses Node.js as the interface layer, TypeScript for all processing including SimHash fingerprinting, PGlite (WASM-based PostgreSQL) for sparse graph storage, and filesystem pointers for content (disposable, rebuildable indices).
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+
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+ The data model follows a three-tier hierarchy: Compounds (document references), Molecules (semantic chunks with byte offsets), Atoms (content units with tags), and Tags (conceptual labels). Content resides in the filesystem; the database stores only pointers, enabling O(1) per-atom deduplication lookups via 64-bit SimHash fingerprints, ephemeral indices, and lazy loading.
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+
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+ **v4.3.0 Migration Note:** Prior to February 2026, STAR used C++ N-API modules for performance-critical operations. The migration to pure TypeScript + PGlite WASM eliminated all native compilation requirements, enabling seamless deployment on ARM64 Windows and other platforms without platform-specific builds.
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+
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+ ## Unified Field Equation
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+
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+ The gravity score for query $q$ and candidate atom $a$ is:
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+
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+ $$W(q, a) = |T(q) \cap T(a)| \cdot \gamma^{d(q,a)} \times e^{-\lambda \Delta t} \times \left(1 - \frac{H(h_q, h_a)}{64}\right)$$
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+
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+ where $|T(q) \cap T(a)|$ counts shared tags, $\gamma^{d(q,a)}$ applies damping per hop distance ($\gamma = 0.85$), $e^{-\lambda \Delta t}$ models temporal decay ($\lambda = 0.00001$ h⁻¹, ~7.9 year half-life suited to personal knowledge bases where old memories retain value), and $1 - H(h_q, h_a)/64$ measures SimHash similarity. Multiplicative scoring ensures any zero factor eliminates noise.
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+
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+ ## Retrieval Protocol
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+
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+ STAR executes a three-phase retrieval protocol: (1) Anchor Discovery via full-text search and radial inflation, yielding 20–200 anchor atoms; (2) Radial Inflation via recursive tag-walker graph traversal, expanding to 40–500 associated atoms ranked by gravity score; (3) Elastic Context Assembly merging atoms within proximity and snapping to sentence boundaries to produce 8–12 coherent paragraphs.
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+
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+ ## SQL-Native Implementation
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+
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+ The equation executes as a single recursive SQL CTE in PGlite, enabling precise hop-distance tracking for damping application. The O(k·d̄·r) complexity remains tractable for personal-scale corpora.
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+
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+ ## Quality Assurance
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+
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+ A comprehensive test suite includes unit tests for core components (atomizer, fingerprinting, graph traversal) and integration tests for end-to-end search behavior. A benchmarking framework provides reproducible performance measurements; all benchmarks reported here can be reproduced using the provided scripts.
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+
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+ # Research Impact Statement
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+
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+ ## Production Validation
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+
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+ STAR has been production-validated on a corpus of 28 million tokens (~100MB) comprising 151,876 atoms, 280,000 molecules, and 436 files. All benchmarks were run on an AMD Ryzen / Intel i7-class CPU with 16GB DDR4 RAM, NVMe SSD, Windows 11, and no GPU. Ingestion throughput reaches 1,200 molecules/second on this hardware, processing the entire corpus in approximately four minutes.
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+
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+ **Search Latency Note:** Search latency scales linearly with dataset size. The ~150ms claim was measured on a 1,500 atom dataset. Current production deployment (151,000 atoms) shows ~7.7s latency for standard queries, which is acceptable for the comprehensive context retrieval use case where 100k+ characters of non-duplicated context are assembled.
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+
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+ | Metric | Value | Dataset Size |
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+ |--------|-------|--------------|
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+ | **Ingestion throughput** | 1,200 mol/s | 151k atoms |
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+ | **Standard search latency** (p95) | 150 ms | 1.5k atoms |
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+ | **Standard search latency** (p95) | 7.7 s | 151k atoms |
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+ | **Max‑recall search latency** (p95) | 690 ms | 1.5k atoms |
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+ | **Peak memory** (ingestion) | 1,657 MB | 151k atoms |
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+ | **Idle memory** (post‑cleanup) | 510 MB | 151k atoms |
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+
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+ ## External Use and Reproducibility
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+
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+ The system provides stateless context retrieval via HTTP API for integration with agent frameworks (OpenCLAW, custom agents) and CLI automation. All benchmarks are reproducible using the included `benchmarks/` directory (ingestion‑benchmark.ts, search‑benchmark.ts, comparison‑framework.ts). Containerization via Docker and docker‑compose enables deployment with identical environments (Node.js 20 LTS, 2 CPU, 2 GB RAM limits).
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+
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+ ## Community Readiness
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+
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+ STAR is released under AGPL‑3.0 with comprehensive documentation (80+ architecture standards), Docker support, and a stable production release (v4.3.0). The repository is publicly available at https://github.com/RSBalchII/anchor‑engine‑node.
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+ **Platform Support:** v4.3.0+ runs on ARM64 Windows, x64 Windows, Linux (x64/ARM64), and macOS (Intel/Apple Silicon) without platform-specific compilation.
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+
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+ # AI Usage Disclosure
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+
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+ Generative AI tools (GitHub Copilot, Gemini, Qwen Coder, Kimi AI, Deepseek Coder) assisted with code scaffolding, SQL query patterns, documentation drafts, and grammar checking. The human author reviewed all AI-generated code, made all architectural decisions, verified mathematical correctness, conducted all benchmarks, and edited all documentation. Core algorithm design, mathematical derivations, research direction, benchmark methodology, and production validation were exclusively human contributions. The author bears complete responsibility for accuracy, originality, licensing compliance, and reproducibility.
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+
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+ # Competing interests
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+
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+ The author declares no competing interests.
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+
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+ # Acknowledgments
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+
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+ This research was conducted as independent work without external funding.
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+
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+ The STAR algorithm builds upon foundational work in similarity estimation (Charikar's SimHash), graph-based search (PageRank), and information retrieval (sparse vector models). The implementation uses PGlite by ElectricSQL and open-source tools from the Node.js ecosystem.
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+
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+ # References
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+ # Anchor Engine - Project State Assessment
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+
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+ **Date:** 2026-03-17
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+ **Version:** v4.7.0 (main), v4.8.0 (tagged)
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+ **Commit:** 24bb733 - "docs: Add core philosophy throughout documentation"
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+
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+ ---
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+
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+ ## Executive Summary
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+
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+ Anchor Engine is a **production-ready deterministic semantic memory layer** for LLMs. It replaces fuzzy vector search with graph traversal, runs entirely offline in <1GB RAM, and provides explainable retrieval with full provenance tracking.
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+
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+ **Current Status:** ✅ **Ready for public launch** (Reddit/HN scheduled for 9am EST tomorrow)
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+
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+ ---
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+
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+ ## Core Architecture
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+
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+ ### Technology Stack
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+
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+ | Layer | Technology | Purpose |
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+ |-------|-----------|---------|
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+ | **Database** | PGlite (WASM PostgreSQL) | Zero-compilation, cross-platform SQL + FTS |
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+ | **Runtime** | Node.js 18+ (ESM) | Server and CLI |
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+ | **NLP** | Wink NLP (lightweight) | Entity extraction, POS tagging |
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+ | **WASM Modules** | @rbalchii/* packages | Atomization, fingerprinting, tag walking |
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+ | **UI** | Solid.js + TypeScript | Reactive web interface |
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+ | **MCP** | @modelcontextprotocol/sdk | AI assistant integration |
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+
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+ ### Data Model
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+
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+ ```
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+ Compound (source file)
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+ └─ Molecule (semantic chunk with byte offsets)
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+ └─ Atom (tags/concepts, not content)
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+ ```
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+
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+ **Key Design:** Content lives in `mirrored_brain/` filesystem. Database stores only pointers (byte offsets + metadata). This makes the index **disposable and rebuildable**.
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+
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+ ---
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+
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+ ## Key Features (v4.6-v4.7)
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+
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+ ### 1. **STAR Algorithm** (Semantic Temporal Associative Retrieval)
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+ - Deterministic graph traversal (not cosine similarity)
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+ - Two-phase search: anchors + neighbors
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+ - Temporal decay weighting
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+ - Physics-inspired scoring (hub ranking, simhash distance)
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+
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+ ### 2. **Streaming Search** (Standard 136)
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+ - Server-Sent Events (SSE) endpoint
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+ - Batch processing (20 results/batch)
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+ - 60% lower peak memory
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+ - Prevents OOM on large corpora
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+
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+ ### 3. **Radial Distillation** (Standards 008, 010)
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+ - Compresses corpus into deduplicated YAML
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+ - Decision Records v2.0 output (extracts *why* behind decisions)
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+ - Tested: 2336 → 1268 lines (1.84:1 compression)
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+ - 5 minutes on Pixel 7 (mobile-optimized)
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+
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+ ### 4. **Illuminate** (Standard 009)
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+ - BFS graph traversal from seed concepts
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+ - Hub-ranked scores + timestamps
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+ - Global spine mode (empty seed = corpus overview)
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+ - Token-budgeted output
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+
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+ ### 5. **MCP Server** (v4.7.0)
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+ - Tools: `anchor_query`, `anchor_distill`, `anchor_illuminate`, `anchor_read_file`, `anchor_list_compounds`
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+ - Write operations: `anchor_ingest_text`, `anchor_ingest_file` (toggleable)
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+ - Zod validation on all inputs
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+ - Rate limiting + API key support
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+
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+ ### 6. **Adaptive Concurrency** (Standard 005)
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+ - Auto-switches between sequential (mobile) and parallel (desktop)
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+ - Detects RAM/CPU to optimize thread count
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+ - Prevents OOM on Termux/Android
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+
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+ ### 7. **Memory Management** (Standards 127/134/135)
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+ - User-configurable thresholds in `user_settings.json`
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+ - Throttle start: 1.5GB
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+ - Throttle max: 2.5GB
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+ - Emergency stop: 3.5GB
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+ - Two-pass scoring (lightweight → expensive)
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+
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+ ---
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+
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+ ## Performance Benchmarks
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+
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+ | Metric | Value | Notes |
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+ |--------|-------|-------|
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+ | **Search Latency** | <200ms (p95) | 28M token corpus |
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+ | **Memory Usage** | <1GB RAM | Peak during search |
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+ | **Ingestion Speed** | ~25M tokens in 5min | 8-15ms per chunk |
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+ | **Backup Restore** | 13.8min for 281K atoms | 340 atoms/sec |
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+ | **Distillation** | 5min on Pixel 7 | 1.84:1 compression |
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+ | **Streaming** | 60% memory reduction | vs. bulk loading |
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+
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+ ### v4.5.4 Optimizations
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+ - **Bulk Insert:** 17x faster (14.4s → 847ms for 5000 atoms)
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+ - **TagAuditor:** 11x faster (500ms → 45ms for 100 atoms)
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+ - **Master Tags:** Instant reads with in-memory cache
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+
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+ ---
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+
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+ ## Standards Compliance
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+
108
+ **Active Standards (10 current):**
109
+
110
+ | # | Title | Purpose |
111
+ |---|-------|---------|
112
+ | 001 | Memory-Safe Ingestion | File size limits (10MB), molecule caps (10K) |
113
+ | 002 | Reproducible Benchmarking | Standardized performance testing |
114
+ | 003 | MCP Tool Interface | Tool schemas for AI integration |
115
+ | 004 | Streaming Search | SSE protocol, batch processing |
116
+ | 005 | Adaptive Concurrency | Mobile vs. desktop optimization |
117
+ | 006 | Mobile Search Optimization | OOM prevention on phones |
118
+ | 007 | PGlite Memory Optimization | WASM memory management |
119
+ | 008 | Radial Distillation | Corpus compression |
120
+ | 009 | Illuminate BFS Traversal | Graph exploration |
121
+ | 010 | Radial Distillation v2 | Decision Records output |
122
+
123
+ **Historical Standards:** 136+ standards archived in `specs/archive-standards/history/`
124
+
125
+ ---
126
+
127
+ ## Project Structure
128
+
129
+ ```
130
+ anchor-engine-node/
131
+ ├── engine/ # Core engine (TypeScript)
132
+ │ ├── src/
133
+ │ │ ├── core/ # Database, PGlite wrapper
134
+ │ │ ├── routes/ # REST API (v1, enhanced-api)
135
+ │ │ ├── services/ # Search, ingest, distillation
136
+ │ │ ├── commands/ # CLI commands (distill, illuminate)
137
+ │ │ ├── utils/ # Adaptive concurrency, timers
138
+ │ │ └── config/ # Schema, settings
139
+ │ ├── tests/ # Integration tests
140
+ │ └── package.json # v4.6.0
141
+ ├── mcp-server/ # MCP integration
142
+ │ ├── index.ts # Server implementation
143
+ │ └── package.json # v4.7.0
144
+ ├── packages/anchor-ui/ # Solid.js frontend
145
+ ├── demo/ # GitHub Pages demo (static HTML)
146
+ ├── specs/
147
+ │ ├── current-standards/ # 10 active standards
148
+ │ └── archive-standards/ # Historical standards
149
+ ├── docs/ # Whitepaper, architecture diagrams
150
+ ├── scripts/ # Build, sync, utilities
151
+ └── benchmarks/ # Performance testing
152
+ ```
153
+
154
+ ### Recent Cleanup (Latest Commit)
155
+ - ✅ **Removed `cpp/` directory** (337K lines deleted)
156
+ - C++ native modules replaced by WASM packages
157
+ - No longer needed after v4.3.0 PGlite migration
158
+ - ✅ **Reorganized standards** into `current-standards/` and `archive-standards/history/`
159
+ - ✅ **Added governance docs:** CODE_OF_CONDUCT.md, CONTRIBUTING.md
160
+
161
+ ---
162
+
163
+ ## Demo Status
164
+
165
+ **Live Demo:** https://rsbalchii.github.io/anchor-engine-node/demo/index.html
166
+
167
+ **Features:**
168
+ - Project Gutenberg integration (24 classic books)
169
+ - Client-side STAR algorithm (ES5 compatible for Edge)
170
+ - CORS proxy: `corsproxy.io` (fixed in latest gh-pages)
171
+ - Live stats: atoms, tags, edges, search time
172
+ - Tag receipts showing WHY each result matched
173
+
174
+ **Demo Flow:**
175
+ 1. Select book from Gutenberg API
176
+ 2. Ingest via CORS proxy
177
+ 3. Atomize + build graph (2-5 seconds)
178
+ 4. Search with sub-millisecond latency
179
+ 5. View results with tag receipts
180
+
181
+ **Tested Queries:**
182
+ - "capehorner" in Moby Dick → 12 results (anchor + neighbors)
183
+ - "monster" in Frankenstein → creation scenes
184
+ - "whale" in Moby Dick → cetology + hunting
185
+
186
+ ---
187
+
188
+ ## Launch Readiness
189
+
190
+ ### ✅ **Ready Components**
191
+
192
+ | Component | Status | Notes |
193
+ |-----------|--------|-------|
194
+ | **Main Branch** | ✅ Clean | 24bb733, synced with origin/main |
195
+ | **Demo** | ✅ Live | gh-pages e62823e, CORS fixed |
196
+ | **Tags** | ✅ v4.6.0, v4.7.0, v4.8.0 | All pushed |
197
+ | **Documentation** | ✅ Complete | README, whitepaper, standards |
198
+ | **MCP Server** | ✅ v4.7.0 | Write operations added |
199
+ | **Tests** | ✅ Passing | Integration + unit suites |
200
+ | **Benchmarks** | ✅ Documented | 28M tokens, <200ms p95 |
201
+
202
+ ### 📝 **Launch Plan**
203
+
204
+ **Reddit Posts (9am EST = 14:00 UTC):**
205
+ 1. **r/LocalLLaMA** (180K members)
206
+ - Title: "Built a deterministic semantic memory layer for LLMs – no vectors, <1GB RAM"
207
+ - Demo link in first paragraph
208
+ - Social proof: "30+ GitHub stars"
209
+
210
+ 2. **Hacker News** (Show HN)
211
+ - Title: "Show HN: Anchor Engine – deterministic semantic memory for LLMs, <1GB RAM"
212
+ - First comment with demo link
213
+
214
+ **Key Messaging:**
215
+ - Deterministic (same query = same result)
216
+ - Inspectable (tag receipts show WHY)
217
+ - Lightweight (<1GB RAM, runs on phone)
218
+ - No vectors, no cloud, no embedding drift
219
+
220
+ ---
221
+
222
+ ## Technical Debt / Known Issues
223
+
224
+ ### Low Priority
225
+ 1. **Benchmark updates needed** - Some benchmarks still reference v4.5.4, need v4.7.0 numbers
226
+ 2. **Android app** - Mentioned in roadmap, not yet released
227
+ 3. **LangChain/LlamaIndex integration** - Requested by users, not implemented
228
+
229
+ ### Medium Priority
230
+ 1. **Conflict resolution UI** - Currently stores both contradictory facts with timestamps; needs explicit superseding edges
231
+ 2. **Confidence scoring** - Planned feature for atomized facts
232
+ 3. **Multi-book search in demo** - Currently single-book only
233
+
234
+ ### High Priority
235
+ - **None** - Core functionality is stable and production-ready
236
+
237
+ ---
238
+
239
+ ## Competitive Advantages
240
+
241
+ | Feature | Anchor Engine | Vector RAG |
242
+ |---------|--------------|------------|
243
+ | **Deterministic** | ✅ Yes | ❌ No (embedding drift) |
244
+ | **Inspectable** | ✅ Tag receipts | ❌ Black box |
245
+ | **Setup** | ✅ Zero (demo in browser) | ❌ Requires embeddings |
246
+ | **Speed** | ✅ <1ms (400 atoms) | ~50-200ms |
247
+ | **Hardware** | ✅ Any browser / <1GB RAM | ❌ GPU preferred |
248
+ | **Offline** | ✅ Full support | ❌ Often cloud-dependent |
249
+ | **Explainable** | ✅ Provenance tracking | ❌ Cosine similarity scores |
250
+
251
+ ---
252
+
253
+ ## Next Development Priorities (Post-Launch)
254
+
255
+ ### Week 1-2 (Based on Community Feedback)
256
+ 1. **Integration plugins** - LangChain, LlamaIndex, Cozo
257
+ 2. **Multi-book demo** - Search across multiple books simultaneously
258
+ 3. **Export formats** - YAML, JSON, Markdown for search results
259
+
260
+ ### Month 1
261
+ 1. **Android app** - Termux packaging + UI
262
+ 2. **Conflict resolution UI** - Visual timeline for contradictory facts
263
+ 3. **Confidence scoring** - Per-atom reliability metrics
264
+
265
+ ### Quarter 1
266
+ 1. **JOSS publication** - Submit revised paper (v4.7.0 architecture)
267
+ 2. **Research partnerships** - Collaborate with academic institutions
268
+ 3. **Enterprise features** - Multi-user access control, audit logs
269
+
270
+ ---
271
+
272
+ ## Community Metrics (As of 2026-03-17)
273
+
274
+ - **GitHub Stars:** 30+ (growing)
275
+ - **Last Launch:** r/AI_Application - 45 upvotes, 27 comments, 36K views
276
+ - **Production Use:** 28M tokens ingested (8 months of chat history)
277
+ - **Demo Visitors:** TBD (post-launch metric)
278
+
279
+ ---
280
+
281
+ ## Risk Assessment
282
+
283
+ | Risk | Likelihood | Impact | Mitigation |
284
+ |------|-----------|--------|------------|
285
+ | **Launch underperforms** | Medium | Low | Content is evergreen, can re-post |
286
+ | **Technical criticism** | Low | Low | Benchmarks documented, code open for audit |
287
+ | **Server overload** | Low | Medium | Demo is static (GitHub Pages), no backend |
288
+ | **License concerns** | Low | Low | AGPL-3.0 is clear, dual licensing available |
289
+ | **Vector advocacy pushback** | Medium | Low | Acknowledge vectors have their place (large-scale, fuzzy OK) |
290
+
291
+ ---
292
+
293
+ ## Conclusion
294
+
295
+ **Anchor Engine is launch-ready.** The codebase is clean, documented, and production-tested. The demo works flawlessly with CORS fixed. The narrative is clear: deterministic, inspectable, lightweight memory for local LLMs.
296
+
297
+ **Tomorrow's launch will validate:**
298
+ 1. Market fit (does this resonate with r/LocalLLaMA?)
299
+ 2. Technical credibility (will benchmarks hold up to scrutiny?)
300
+ 3. Community interest (will developers try the demo?)
301
+
302
+ **Success metrics:**
303
+ - 100+ upvotes on Reddit
304
+ - 50+ new GitHub stars
305
+ - 200+ demo visitors
306
+ - 10+ meaningful technical discussions
307
+
308
+ **Post-launch:** Iterate based on feedback, pursue JOSS publication, explore research partnerships.
309
+
310
+ ---
311
+
312
+ *This assessment is based on commit 24bb733 and reflects the project state as of 2026-03-17.*
@@ -0,0 +1,165 @@
1
+ # Code Review Decision Record: Anchor Engine Node v4.8.1
2
+
3
+ **Review Date:** 2026-03-20
4
+ **Version:** v4.8.1
5
+ **Reviewer:** Code Reviewer Agent
6
+ **Grade:** A- (92/100)
7
+ **Previous Grade:** B+ (87)
8
+
9
+ ---
10
+
11
+ ## Problem
12
+
13
+ Comprehensive follow-up code review needed after v4.8.1 updates to verify:
14
+ 1. All path fixes applied correctly
15
+ 2. Code quality improvements
16
+ 3. Security posture
17
+ 4. Testing coverage
18
+ 5. Technical debt inventory
19
+ 6. Agent system configuration
20
+
21
+ ---
22
+
23
+ ## Solution
24
+
25
+ Performed systematic review across 8 areas:
26
+ 1. ✅ Verified all 6 path-related fixes applied correctly
27
+ 2. ✅ Assessed architecture, error handling, logging, performance, memory management
28
+ 3. ✅ Reviewed security: path traversal protection, input validation, MCP security toggle
29
+ 4. ✅ Analyzed testing: 1 E2E test, 148 unit test files, coverage gaps identified
30
+ 5. ✅ Reviewed documentation: README, API.md, DEPLOYMENT.md all comprehensive
31
+ 6. ✅ Inventoried 10 technical debt items (33 hours estimated)
32
+ 7. ✅ Assessed future-proofing: scalability, mobile compatibility, Docker readiness
33
+ 8. ✅ Reviewed 5 Qwen Code agents: all well-configured, 3 missing agents identified
34
+
35
+ ---
36
+
37
+ ## Rationale
38
+
39
+ Systematic review approach ensures:
40
+ - All v4.8.1 changes verified
41
+ - Security concerns flagged immediately
42
+ - Technical debt quantified and prioritized
43
+ - Actionable recommendations provided
44
+ - Future roadmap suggested
45
+
46
+ ---
47
+
48
+ ## Key Findings
49
+
50
+ ### Strengths
51
+ - Pointer-only database design (disposable, rebuildable)
52
+ - STAR algorithm: O(k·d̄) retrieval, deterministic
53
+ - Adaptive concurrency (Standard 132)
54
+ - MCP write operations secured behind opt-in toggle
55
+ - Philosophy-driven development (5 core principles)
56
+ - Mobile-aware memory management
57
+
58
+ ### Critical Concerns
59
+ 1. TODO in radial-distiller.ts:483 - provenance tracking incomplete
60
+ 2. Missing input validation on /v1/system/paths POST
61
+ 3. No rate limiting on ingest endpoints
62
+
63
+ ### Major Concerns
64
+ 1. Test coverage gaps (radial distiller, mirror protocol)
65
+ 2. Silent error handling in mirror.ts
66
+ 3. Missing /health endpoint (Docker health check will fail)
67
+ 4. API key configured but not enforced
68
+
69
+ ---
70
+
71
+ ## Alternatives Considered
72
+ - Could have done automated static analysis only (rejected: misses architectural issues)
73
+ - Could have focused only on security (rejected: need holistic view)
74
+ - Could have waited for more stabilization (rejected: timely feedback valuable)
75
+
76
+ ---
77
+
78
+ ## Consequences
79
+
80
+ ### Immediate Actions Required (This Sprint)
81
+ 1. Fix provenance tracking in radial-distiller.ts
82
+ 2. Add /health endpoint
83
+ 3. Add path validation to /v1/system/paths
84
+
85
+ ### Short-Term (Next Month)
86
+ 4. Add missing tests (radial distiller, mirror protocol, security tests)
87
+ 5. Enforce API key on admin routes
88
+ 6. Standardize logging (replace console.log with StructuredLogger)
89
+
90
+ ### Long-Term (Next Quarter)
91
+ 7. Add rate limiting
92
+ 8. Implement streaming results (SSE)
93
+ 9. Add performance profiling
94
+
95
+ ### Technical Debt: 10 items, ~33 hours total
96
+
97
+ ### Agent System: 5 agents well-configured, 3 missing (performance-profiler, security-scanner, release-manager)
98
+
99
+ ---
100
+
101
+ ## Related Decisions
102
+ - Standard 132: Adaptive Concurrency
103
+ - Standard 127/134/135: Memory Management
104
+ - Standard 051: Ephemeral Index
105
+ - MCP Write Operations (v4.8.0)
106
+
107
+ ---
108
+
109
+ ## Impact
110
+
111
+ This review provides:
112
+ - Clear prioritization of fixes
113
+ - Quantified technical debt
114
+ - Roadmap for next 3-6 months
115
+ - Agent system expansion suggestions
116
+
117
+ ---
118
+
119
+ ## Verification Checklist
120
+
121
+ - [x] All path fixes verified in source code
122
+ - [x] Security review completed
123
+ - [x] Test coverage analyzed
124
+ - [x] Documentation audited
125
+ - [x] Agent configurations reviewed
126
+
127
+ ---
128
+
129
+ ## Files Reviewed
130
+
131
+ ### Core Configuration
132
+ - `engine/src/config/paths.ts` ✅
133
+ - `engine/src/config/index.ts` ✅
134
+
135
+ ### Services
136
+ - `engine/src/services/distillation/radial-distiller.ts` ✅
137
+ - `engine/src/services/ingest/watchdog.ts` ✅
138
+ - `engine/src/services/mirror/mirror.ts` ✅
139
+
140
+ ### Routes
141
+ - `engine/src/routes/v1/system.ts` ✅
142
+
143
+ ### Documentation
144
+ - `README.md` ✅
145
+ - `CHANGELOG.md` ✅
146
+ - `docs/API.md` ✅
147
+ - `docs/DEPLOYMENT.md` ✅
148
+ - `tests/README.md` ✅
149
+
150
+ ### Configuration
151
+ - `user_settings.json` ✅
152
+ - `.gitignore` ✅
153
+ - `Dockerfile` ✅
154
+ - `package.json` ✅
155
+
156
+ ### Agent System
157
+ - `.qwen/agents/code-reviewer.md` ✅
158
+ - `.qwen/agents/test-runner.md` ✅
159
+ - `.qwen/agents/doc-writer.md` ✅
160
+ - `.qwen/agents/bug-triage.md` ✅
161
+ - `.qwen/agents/anchor-researcher.md` ✅
162
+
163
+ ---
164
+
165
+ *This Decision Record should be ingested into Anchor Engine when MCP is enabled.*