@radicalimaging/static-wado-creator 1.3.2 → 1.6.10
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/CHANGELOG.md +234 -0
- package/README.md +1 -1
- package/bin/mkdicomweb.mjs +8 -0
- package/dist/canvas-xaqc8v6y.node +0 -0
- package/dist/index.js +481518 -0
- package/lib/DeleteStudy.js +9 -2
- package/lib/RejectInstance.js +15 -3
- package/lib/StaticWado.js +245 -41
- package/lib/createPart10.js +8 -4
- package/lib/createThumbnail.js +181 -0
- package/lib/index.js +2 -0
- package/lib/instanceMain.js +1 -0
- package/lib/mkdicomwebConfig.js +122 -19
- package/lib/model/TagLists.js +24 -3
- package/lib/model/uids.js +5 -1
- package/lib/operation/InstanceDeduplicate.js +14 -4
- package/lib/operation/ScanStudy.js +38 -5
- package/lib/operation/StudyData.js +158 -38
- package/lib/operation/ThumbnailService.js +65 -31
- package/lib/operation/adapter/decodeImage.js +5 -2
- package/lib/operation/adapter/getImageInfo.js +19 -1
- package/lib/operation/adapter/transcodeImage.js +174 -52
- package/lib/operation/extractImageFrames.js +19 -4
- package/lib/operation/getDataSet.js +41 -7
- package/lib/operation/getEncapsulatedImageFrame.js +30 -6
- package/lib/operation/getUncompressedImageFrame.js +10 -2
- package/lib/operation/getVR.js +10 -2
- package/lib/operation/getValue.js +40 -12
- package/lib/operation/validateMetadata.js +40 -0
- package/lib/program/index.js +5 -3
- package/lib/serverMain.js +27 -0
- package/lib/util/IdCreator.js +32 -6
- package/lib/util/adaptProgramOpts.js +1 -1
- package/lib/util/compressionOptionParser.js +12 -3
- package/lib/util/resultsReport.ts +88 -0
- package/lib/writer/CompleteStudyWriter.js +49 -13
- package/lib/writer/DeduplicateWriter.js +2 -1
- package/lib/writer/ExpandUriPath.js +4 -1
- package/lib/writer/HashDataWriter.js +5 -1
- package/lib/writer/ImageFrameWriter.js +38 -13
- package/lib/writer/RawDicomWriter.js +11 -2
- package/lib/writer/VideoWriter.js +19 -7
- package/lib/writer/WriteMultipart.js +3 -1
- package/lib/writer/WriteStream.js +12 -4
- package/lib/writer/static-dicomweb.code-workspace +8 -0
- package/package.json +23 -19
- package/bin/mkdicomweb.js +0 -9
- package/license.md +0 -21
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@@ -8,7 +8,9 @@ function decodeUtf8(s, options) {
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}
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/** Gets a value as a UTF-8 string - todo, make UTF-8 decode optional. */
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const getValueInlineString = (dataSet, attr, options) => [
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const getValueInlineString = (dataSet, attr, options) => [
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decodeUtf8(dataSet.string(attr.tag), options),
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];
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const getStrings = (dataSet, attr, options) => {
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const ret = dataSet.string(attr.tag);
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@@ -20,21 +22,27 @@ const getStrings = (dataSet, attr, options) => {
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const getValuePatientName = (dataSet, attr) => {
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const strings = getStrings(dataSet, attr);
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return (
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return (
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(strings && strings.map((item) => ({ Alphabetic: item }))) || undefined
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);
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};
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/** Gets either InlineBinary or BulkDataURI, if already defined */
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const getValueInlineBinary = (dataSet, attr) => {
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if (attr.BulkDataURI) return { BulkDataURI: attr.BulkDataURI };
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const binaryValue = dataSet.byteArray.slice(
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const binaryValue = dataSet.byteArray.slice(
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attr.dataOffset,
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attr.dataOffset + attr.length,
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);
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return { InlineBinary: binaryValue.toString("base64") };
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};
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const getValueInlineSignedShort = (dataSet, attr) => {
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const ret = [];
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ret.push(dataSet.int16(attr.tag, i));
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return
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return ret;
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};
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const getValueInlineUnsignedShort = (dataSet, attr) => {
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@@ -70,9 +78,11 @@ const getValueInlineFloat = (dataSet, attr) => {
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return ret;
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};
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const getValueInlineIntString = (dataSet, attr) =>
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const getValueInlineIntString = (dataSet, attr) =>
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getStrings(dataSet, attr).map((val) => parseInt(val));
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const getValueInlineFloatString = (dataSet, attr) =>
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const getValueInlineFloatString = (dataSet, attr) =>
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getStrings(dataSet, attr).map((val) => parseFloat(val));
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const getValueInlineFloatDouble = (dataSet, attr) => {
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if (attr.length > 8) {
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@@ -177,15 +187,30 @@ const isValueInline = (attr, options) => {
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* @param {*} parentAttr attr's parent. If not present means attr is at root level.
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* @returns
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*/
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const getValue = async (
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const getValue = async (
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dataSet,
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attr,
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vr,
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getDataSet,
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callback,
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options,
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parentAttr,
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) => {
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// It will only process pixelData tag if on metadata root. Otherwise it will be skiped.
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const BulkDataURI = await extractImageFrames(
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const BulkDataURI = await extractImageFrames(
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dataSet,
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attr,
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vr,
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callback,
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options,
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);
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return { BulkDataURI };
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}
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if (attr.tag === "xfffee00d") return undefined;
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// Group length
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if (attr.tag.length == 9 && attr.tag.substring(5, 9) === "0000")
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if (attr.tag.length == 9 && attr.tag.substring(5, 9) === "0000")
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return undefined;
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if (attr.items) {
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// sequences
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const result = [];
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if (isValueInline(attr, options)) {
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return getValueInline(dataSet, attr, vr, options);
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}
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const binaryValue = dataSet.byteArray.slice(
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const binaryValue = dataSet.byteArray.slice(
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attr.dataOffset,
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attr.dataOffset + attr.length,
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);
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const mimeType = attr.tag == "x00420011" && dataSet.string("x00420012");
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const BulkDataURI = await callback.bulkdata(binaryValue, { mimeType });
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const { Tags } = require("@radicalimaging/static-wado-util");
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function validateMetadata(options) {
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const serviceUrl = "";
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const { verify, multipart: stowResponse } = options;
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return function (id, result) {
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const getValue = Tags.getValue.bind(null, result.metadata);
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if (verify) {
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console.verbose("Validating metadata", id);
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if (id.studyInstanceUid.length > 64) {
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throw new Error(`StudyInstanceUID too long: ${id.studyInstanceUid}`);
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}
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if (id.seriesInstanceUid.length > 64) {
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throw new Error(`SeriesInstanceUID too long: ${id.studyInstanceUid}`);
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}
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}
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if (stowResponse) {
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const RetrieveURL = `${serviceUrl}${id.studyInstanceUid}/series/${id.seriesInstanceUid}/instances/${id.sopInstanceUid}`;
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// TODO - add check here from plugin to add remote query checks, eg kheops or similar
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const { filename } = id;
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const successMessage = {
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ReferencedSOPSequence: [
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{
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StudyInstanceUID: id.studyInstanceUid,
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SeriesInstanceUID: id.seriesInstanceUid,
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ReferencedSOPClassUID: getValue(Tags.SOPClassUID),
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ReferencedSOPInstanceUID: id.sopInstanceUid,
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RetrieveURL,
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StorageURL: filename,
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},
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],
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};
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this.success("instanceStored", successMessage, filename);
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}
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};
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}
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module.exports = validateMetadata;
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package/lib/program/index.js
CHANGED
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* @returns Program object
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*/
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async function configureProgram(defaults) {
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const configurationFile = await staticWadoUtil.loadConfiguration(
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const configurationFile = await staticWadoUtil.loadConfiguration(
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defaults,
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process.argv,
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);
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return staticWadoUtil.configureCommands(defaults);
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}
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exports.configureProgram = configureProgram;
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const readline = require("node:readline");
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const {
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argv,
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argv0,
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exit,
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stdin: input,
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stdout: output,
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} = require("node:process");
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const StaticWado = require("./StaticWado");
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const adaptProgramOpts = require("./util/adaptProgramOpts");
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module.exports = async function createMain(options, program) {
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const rl = readline.createInterface({ input, output });
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for await (const line of rl) {
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exit(0);
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}
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argv.splice(2, argv.length - 2, ...line.split(" "));
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console.verbose("exec mkdicomweb", JSON.stringify(argv));
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// Configure program commander
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await StaticWado.configureProgram(StaticWado.mkdicomwebConfig);
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output.write("mkdicomweb server -->\n");
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}
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};
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package/lib/util/IdCreator.js
CHANGED
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const path = require("path");
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const {
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getStudyUIDPathAndSubPath,
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} = require("@radicalimaging/static-wado-util");
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function IdCreator({
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function IdCreator({
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directoryName,
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deduplicatedRoot,
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deduplicatedInstancesRoot,
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hashStudyUidPath,
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}) {
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return (uids, filename) => {
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const
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const
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const { studyInstanceUid, seriesInstanceUid, sopInstanceUid } = uids;
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const { path: hashPath = "", subpath: hashSubpath = "" } = hashStudyUidPath
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? getStudyUIDPathAndSubPath(studyInstanceUid)
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: {};
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const studySubDir = hashStudyUidPath
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? path.join(hashPath, hashSubpath, studyInstanceUid)
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: studyInstanceUid;
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const studyPath = path.join(directoryName, "studies", studySubDir);
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const seriesRootPath = path.join(studyPath, "series", seriesInstanceUid);
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const sopInstanceRootPath = path.join(
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seriesRootPath,
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"instances",
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sopInstanceUid,
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);
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const imageFrameRootPath = path.join(sopInstanceRootPath, "frames");
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const deduplicatedPath = path.join(deduplicatedRoot, studySubDir);
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const deduplicatedInstancesPath = path.join(
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deduplicatedInstancesRoot,
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studySubDir,
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);
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return {
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...uids,
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studyPath,
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const { program } = require("@radicalimaging/static-wado-util");
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const {
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const {
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getDestinationTranscoder,
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} = require("../operation/adapter/transcodeImage");
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module.exports = function compressionOptionParser(value) {
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const destination = getDestinationTranscoder(value);
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if (destination) {
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console.log(
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console.log(
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"Found destination transferSyntax ",
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destination.transferSyntaxUid,
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"for ",
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value,
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);
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} else {
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console.log("No transcoder destination for ", value);
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throw new program.InvalidArgumentError(
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throw new program.InvalidArgumentError(
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`No transcoder destination for ${value}`,
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);
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}
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return destination.transferSyntaxUid;
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};
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import fs from "fs";
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const results = [];
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let sopResponse = null;
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function ensureSOPResponse(data) {
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if( !data.ReferencedSOPSequence && !data.FailedSOPSequence ) {
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return;
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}
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if( !sopResponse ) {
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sopResponse = {
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...data,
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FailedSOPSequence: undefined,
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ReferencedSOPSequence: undefined,
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}
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results.push(sopResponse);
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}
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if( data.ReferencedSOPSequence ) {
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sopResponse.ReferencedSOPSequence ||= [];
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sopResponse.ReferencedSOPSequence.push(...data.ReferencedSOPSequence);
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}
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if( data.FailedSOPSequence ) {
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sopResponse.FailedSOPSequence ||= [];
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sopResponse.FailedSOPSequence.push(...data.FailedSOPSequence);
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}
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}
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export function Success(options) {
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const { deleteInput = false } = options;
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return (_action, data, file) => {
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if( data.ReferencedSOPSequence ) {
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ensureSOPResponse(data);
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} else {
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results.push(data);
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}
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if (file && deleteInput) {
|
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console.noQuiet("Deleting", file);
|
|
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|
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fs.unlinkSync(file);
|
|
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|
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} else if( file ) {
|
|
41
|
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console.verbose("Not deleting", file);
|
|
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|
+
}
|
|
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|
+
};
|
|
44
|
+
}
|
|
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|
+
|
|
46
|
+
export function Failure(options) {
|
|
47
|
+
const { deleteFailed } = options;
|
|
48
|
+
|
|
49
|
+
return (_action, data, file) => {
|
|
50
|
+
if (data.FailedSOPSequence) {
|
|
51
|
+
ensureSOPResponse(data);
|
|
52
|
+
} else {
|
|
53
|
+
results.push(data);
|
|
54
|
+
}
|
|
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|
+
if( file && deleteFailed ) {
|
|
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|
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console.noQuiet("Deleting failure", file);
|
|
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|
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fs.unlinkSync(file);
|
|
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|
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} else if( file ) {
|
|
59
|
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console.verbose("Not deleting failure file", file);
|
|
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|
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}
|
|
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|
+
};
|
|
62
|
+
}
|
|
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|
+
|
|
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|
+
export function clearResults() {
|
|
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|
+
results.splice(0,results.length);
|
|
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|
+
sopResponse = null;
|
|
67
|
+
}
|
|
68
|
+
|
|
69
|
+
export function WriteResults(options) {
|
|
70
|
+
const { multipart } = options;
|
|
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|
+
|
|
72
|
+
return function () {
|
|
73
|
+
if (multipart) {
|
|
74
|
+
const str =
|
|
75
|
+
results.length === 1
|
|
76
|
+
? JSON.stringify(results[0])
|
|
77
|
+
: `[\n${results.map((r) => JSON.stringify(r, null, 2)).join(",\n")}\n]`;
|
|
78
|
+
console.log(
|
|
79
|
+
"\r\n--boundary-response\r\n" +
|
|
80
|
+
"content-type: application/json\r\n\r\n" +
|
|
81
|
+
str +
|
|
82
|
+
"\r\n--boundary-response--\r\n"
|
|
83
|
+
);
|
|
84
|
+
}
|
|
85
|
+
|
|
86
|
+
clearResults();
|
|
87
|
+
};
|
|
88
|
+
}
|
|
@@ -1,4 +1,8 @@
|
|
|
1
|
-
const {
|
|
1
|
+
const {
|
|
2
|
+
JSONReader,
|
|
3
|
+
JSONWriter,
|
|
4
|
+
Stats,
|
|
5
|
+
} = require("@radicalimaging/static-wado-util");
|
|
2
6
|
const { Tags } = require("@radicalimaging/static-wado-util");
|
|
3
7
|
const StudyData = require("../operation/StudyData");
|
|
4
8
|
|
|
@@ -22,48 +26,77 @@ const CompleteStudyWriter = (options) => {
|
|
|
22
26
|
if (options.isGroup) {
|
|
23
27
|
if (studyData.dirty) {
|
|
24
28
|
await studyData.writeDeduplicatedGroup();
|
|
25
|
-
console.
|
|
29
|
+
console.noQuiet(
|
|
30
|
+
"Wrote updated deduplicated data for study",
|
|
31
|
+
studyData.studyInstanceUid,
|
|
32
|
+
);
|
|
26
33
|
} else {
|
|
27
|
-
console.
|
|
34
|
+
console.noQuiet(
|
|
35
|
+
"Not writing new deduplicated data because it is clean:",
|
|
36
|
+
studyData.studyInstanceUid,
|
|
37
|
+
);
|
|
38
|
+
const message = {
|
|
39
|
+
text: "Metadata clean, not updating",
|
|
40
|
+
status: 0,
|
|
41
|
+
studyInstanceUid: studyData.studyInstanceUid,
|
|
42
|
+
};
|
|
43
|
+
this.success("metadataClean", message);
|
|
28
44
|
}
|
|
29
45
|
await studyData.deleteInstancesReferenced();
|
|
30
46
|
}
|
|
31
47
|
|
|
32
48
|
if (!options.isStudyData) {
|
|
33
|
-
|
|
34
|
-
|
|
49
|
+
if (options.notifications)
|
|
50
|
+
this.notificationService.notifyStudy(studyData.studyInstanceUid);
|
|
35
51
|
delete this.studyData;
|
|
36
52
|
Stats.StudyStats.summarize();
|
|
37
53
|
return;
|
|
38
54
|
}
|
|
39
55
|
|
|
40
56
|
const isDirtyMetadata = await studyData.dirtyMetadata();
|
|
41
|
-
if (!isDirtyMetadata) {
|
|
57
|
+
if (!isDirtyMetadata && !options.force) {
|
|
42
58
|
console.log("Study metadata", studyData.studyInstanceUid, "is clean.");
|
|
43
59
|
delete this.studyData;
|
|
44
|
-
Stats.StudyStats.summarize(
|
|
60
|
+
Stats.StudyStats.summarize(
|
|
61
|
+
`Study metadata ${studyData.studyInstanceUid} has clean metadata, not writing`,
|
|
62
|
+
);
|
|
45
63
|
return;
|
|
46
64
|
}
|
|
47
|
-
console.
|
|
65
|
+
console.noQuiet("Writing study metadata", studyData.studyInstanceUid);
|
|
48
66
|
|
|
49
67
|
const studyQuery = await studyData.writeMetadata();
|
|
50
68
|
|
|
51
|
-
const allStudies = await JSONReader(
|
|
69
|
+
const allStudies = await JSONReader(
|
|
70
|
+
options.directoryName,
|
|
71
|
+
"studies/index.json.gz",
|
|
72
|
+
[],
|
|
73
|
+
);
|
|
52
74
|
const studyUID = Tags.getValue(studyQuery, Tags.StudyInstanceUID);
|
|
53
75
|
if (!studyUID) {
|
|
54
76
|
console.error("studyQuery=", studyQuery);
|
|
55
77
|
throw new Error("Study query has null studyUID");
|
|
56
78
|
}
|
|
57
|
-
const studyIndex = allStudies.findIndex(
|
|
79
|
+
const studyIndex = allStudies.findIndex(
|
|
80
|
+
(item) => Tags.getValue(item, Tags.StudyInstanceUID) == studyUID,
|
|
81
|
+
);
|
|
58
82
|
if (studyIndex == -1) {
|
|
59
83
|
allStudies.push(studyQuery);
|
|
60
84
|
} else {
|
|
61
85
|
allStudies[studyIndex] = studyQuery;
|
|
62
86
|
}
|
|
63
87
|
await JSONWriter(options.directoryName, "studies", allStudies);
|
|
64
|
-
if (options.notifications)
|
|
88
|
+
if (options.notifications)
|
|
89
|
+
this.notificationService.notifyStudy(studyData.studyInstanceUid);
|
|
90
|
+
const message = {
|
|
91
|
+
action: "metadata",
|
|
92
|
+
status: 0,
|
|
93
|
+
studyInstanceUid: studyData.studyInstanceUid,
|
|
94
|
+
};
|
|
95
|
+
this.success("completeStudyWriter", message);
|
|
65
96
|
delete this.studyData;
|
|
66
|
-
Stats.StudyStats.summarize(
|
|
97
|
+
Stats.StudyStats.summarize(
|
|
98
|
+
`Wrote study metadata/query files for ${studyData.studyInstanceUid}`,
|
|
99
|
+
);
|
|
67
100
|
}
|
|
68
101
|
|
|
69
102
|
/**
|
|
@@ -81,7 +114,10 @@ const CompleteStudyWriter = (options) => {
|
|
|
81
114
|
await callback.completeStudy(studyData);
|
|
82
115
|
}
|
|
83
116
|
callback.setStudyData(new StudyData(id, options));
|
|
84
|
-
|
|
117
|
+
if (!options.isSkipStudyScan) {
|
|
118
|
+
console.verbose("Initiate StudyData");
|
|
119
|
+
await callback.studyData.init(options);
|
|
120
|
+
}
|
|
85
121
|
return callback.studyData;
|
|
86
122
|
};
|
|
87
123
|
|
|
@@ -24,7 +24,8 @@ const DeduplicateWriter = (options) =>
|
|
|
24
24
|
const studyData = await this.completeStudy.getCurrentStudyData(this, id);
|
|
25
25
|
|
|
26
26
|
if (options.isDeduplicate) {
|
|
27
|
-
if (options.verbose)
|
|
27
|
+
if (options.verbose)
|
|
28
|
+
console.log("Writing single instance", id.studyInstanceUid);
|
|
28
29
|
await perInstanceWriter(id, data);
|
|
29
30
|
} else if (options.verbose) {
|
|
30
31
|
console.log("Not writing single instance deduplicated");
|
|
@@ -8,7 +8,10 @@ const ExpandUriPath = (id, path, options) => {
|
|
|
8
8
|
}
|
|
9
9
|
expandedRelative = `studies/${id.studyInstanceUid}/${expandedRelativeSeries}`;
|
|
10
10
|
}
|
|
11
|
-
if (options.verbose)
|
|
11
|
+
if (options.verbose)
|
|
12
|
+
console.log(
|
|
13
|
+
`Expanded path returned: ${prependBulkDataUri}${expandedRelative}${path}`,
|
|
14
|
+
);
|
|
12
15
|
return `${prependBulkDataUri}${expandedRelative}${path}`;
|
|
13
16
|
};
|
|
14
17
|
|
|
@@ -43,7 +43,11 @@ const HashDataWriter =
|
|
|
43
43
|
gzip,
|
|
44
44
|
});
|
|
45
45
|
if (isRaw) {
|
|
46
|
-
await WriteMultipart(
|
|
46
|
+
await WriteMultipart(
|
|
47
|
+
writeStream,
|
|
48
|
+
[new MultipartHeader("Content-Type", "application/octet-stream")],
|
|
49
|
+
rawData,
|
|
50
|
+
);
|
|
47
51
|
} else {
|
|
48
52
|
await writeStream.write(rawData);
|
|
49
53
|
}
|
|
@@ -18,29 +18,54 @@ const ImageFrameWriter = (options) => {
|
|
|
18
18
|
}
|
|
19
19
|
|
|
20
20
|
if (encapsulatedImage || !extension) {
|
|
21
|
-
const writeStream = WriteStream(
|
|
22
|
-
|
|
23
|
-
|
|
24
|
-
|
|
21
|
+
const writeStream = WriteStream(
|
|
22
|
+
id.imageFrameRootPath,
|
|
23
|
+
`${1 + index}.mht`,
|
|
24
|
+
{
|
|
25
|
+
gzip: type.gzip,
|
|
26
|
+
mkdir: true,
|
|
27
|
+
},
|
|
28
|
+
);
|
|
25
29
|
await WriteMultipart(
|
|
26
30
|
writeStream,
|
|
27
|
-
[
|
|
28
|
-
|
|
31
|
+
[
|
|
32
|
+
new MultipartHeader("Content-Type", type.contentType, [
|
|
33
|
+
new MultipartAttribute("transfer-syntax", transferSyntaxUid),
|
|
34
|
+
]),
|
|
35
|
+
],
|
|
36
|
+
content,
|
|
29
37
|
);
|
|
30
38
|
await writeStream.close();
|
|
31
|
-
console.verbose(
|
|
39
|
+
console.verbose(
|
|
40
|
+
"Wrote encapsulated image frame",
|
|
41
|
+
id.sopInstanceUid,
|
|
42
|
+
index + 1,
|
|
43
|
+
type.contentType,
|
|
44
|
+
);
|
|
32
45
|
}
|
|
33
46
|
if (extension && singlePartImage) {
|
|
34
|
-
const writeStreamSingle = WriteStream(
|
|
35
|
-
|
|
36
|
-
|
|
37
|
-
|
|
47
|
+
const writeStreamSingle = WriteStream(
|
|
48
|
+
id.imageFrameRootPath,
|
|
49
|
+
`${1 + index}${extension}`,
|
|
50
|
+
{
|
|
51
|
+
gzip: type.gzip,
|
|
52
|
+
mkdir: true,
|
|
53
|
+
},
|
|
54
|
+
);
|
|
38
55
|
await writeStreamSingle.write(content);
|
|
39
56
|
await writeStreamSingle.close();
|
|
40
|
-
console.verbose(
|
|
57
|
+
console.verbose(
|
|
58
|
+
"Wrote single part image frame",
|
|
59
|
+
id.sopInstanceUid,
|
|
60
|
+
index + 1,
|
|
61
|
+
extension,
|
|
62
|
+
);
|
|
41
63
|
}
|
|
42
64
|
const includeSeries = true;
|
|
43
|
-
return ExpandUriPath(id, `instances/${id.sopInstanceUid}/frames`, {
|
|
65
|
+
return ExpandUriPath(id, `instances/${id.sopInstanceUid}/frames`, {
|
|
66
|
+
includeSeries,
|
|
67
|
+
...options,
|
|
68
|
+
});
|
|
44
69
|
};
|
|
45
70
|
};
|
|
46
71
|
|
|
@@ -4,10 +4,15 @@ const WriteMultipart = require("./WriteMultipart");
|
|
|
4
4
|
const { MultipartHeader } = require("./MultipartHeader");
|
|
5
5
|
|
|
6
6
|
const modalitiesToRawWrite = ["SEG", "SR"];
|
|
7
|
+
const sopClassesToRawWrite = ["1.2.840.10008.5.1.4.1.1.30"];
|
|
7
8
|
|
|
8
9
|
const defaultSelector = (instance) => {
|
|
9
10
|
const modality = instance.metadata[Tags.Modality]?.Value?.[0];
|
|
10
|
-
|
|
11
|
+
const sopClass = instance.metadata[Tags.SOPClassUID]?.Value?.[0];
|
|
12
|
+
return (
|
|
13
|
+
modalitiesToRawWrite.indexOf(modality) !== -1 ||
|
|
14
|
+
sopClassesToRawWrite.indexOf(sopClass) !== -1
|
|
15
|
+
);
|
|
11
16
|
};
|
|
12
17
|
|
|
13
18
|
/** Writes out raw DICOM files, encapsulated in multipart and gzipped - currently just DICOM SR and SEG */
|
|
@@ -28,7 +33,11 @@ const RawDicomWriter =
|
|
|
28
33
|
});
|
|
29
34
|
const { length } = content;
|
|
30
35
|
const buffer = content.slice(0, length);
|
|
31
|
-
await WriteMultipart(
|
|
36
|
+
await WriteMultipart(
|
|
37
|
+
writeStream,
|
|
38
|
+
[new MultipartHeader("Content-Type", contentType, [])],
|
|
39
|
+
buffer,
|
|
40
|
+
);
|
|
32
41
|
await writeStream.close();
|
|
33
42
|
};
|
|
34
43
|
RawDicomWriter.defaultSelector = defaultSelector;
|
|
@@ -19,16 +19,23 @@ const VIDEO_TYPES = {
|
|
|
19
19
|
// TODO - add the new multi-segment MPEG2 and H264 variants
|
|
20
20
|
};
|
|
21
21
|
|
|
22
|
-
const isVideo = (value) =>
|
|
22
|
+
const isVideo = (value) =>
|
|
23
|
+
VIDEO_TYPES[
|
|
24
|
+
value && value.string ? value.string(Tags.RawTransferSyntaxUID) : value
|
|
25
|
+
];
|
|
23
26
|
|
|
24
27
|
const VideoWriter = () =>
|
|
25
28
|
async function run(id, dataSet) {
|
|
26
29
|
console.log(`Writing video ${id.sopInstanceUid}`);
|
|
27
30
|
const extension = VIDEO_TYPES[dataSet.string(Tags.RawTransferSyntaxUID)];
|
|
28
31
|
const filename = `index.${extension}`;
|
|
29
|
-
const writeStream = WriteStream(
|
|
30
|
-
|
|
31
|
-
|
|
32
|
+
const writeStream = WriteStream(
|
|
33
|
+
`${id.sopInstanceRootPath}/rendered`,
|
|
34
|
+
filename,
|
|
35
|
+
{
|
|
36
|
+
mkdir: true,
|
|
37
|
+
},
|
|
38
|
+
);
|
|
32
39
|
let length = 0;
|
|
33
40
|
const { fragments } = dataSet.elements.x7fe00010;
|
|
34
41
|
|
|
@@ -39,13 +46,18 @@ const VideoWriter = () =>
|
|
|
39
46
|
// The zero position fragment isn't available, even though present in the original data
|
|
40
47
|
for (let i = 0; i < fragments.length; i++) {
|
|
41
48
|
const fragment = fragments[i];
|
|
42
|
-
const blob = dataSet.byteArray.slice(
|
|
49
|
+
const blob = dataSet.byteArray.slice(
|
|
50
|
+
fragment.position,
|
|
51
|
+
fragment.position + fragment.length,
|
|
52
|
+
);
|
|
43
53
|
length += blob.length;
|
|
44
54
|
await writeStream.write(blob);
|
|
45
55
|
}
|
|
46
56
|
await writeStream.close();
|
|
47
|
-
console.log(
|
|
48
|
-
|
|
57
|
+
console.log(
|
|
58
|
+
`Done video ${id.sopInstanceRootPath}\\${filename} of length ${length}`,
|
|
59
|
+
);
|
|
60
|
+
return `series/${id.seriesInstanceUid}/instances/${id.sopInstanceUid}/rendered?length=${length}&offset=0&accept=video/mp4`;
|
|
49
61
|
};
|
|
50
62
|
|
|
51
63
|
module.exports = VideoWriter;
|
|
@@ -9,7 +9,9 @@ const WriteMultipart = async (writeStream, headers, content) => {
|
|
|
9
9
|
if (header.attributes) {
|
|
10
10
|
for (let j = 0; j < header.attributes.length; j++) {
|
|
11
11
|
const attribute = header.attributes[j];
|
|
12
|
-
await writeStream.write(
|
|
12
|
+
await writeStream.write(
|
|
13
|
+
`;${attribute.attributeName}=${attribute.attributeValue}`,
|
|
14
|
+
);
|
|
13
15
|
}
|
|
14
16
|
}
|
|
15
17
|
await writeStream.write("\r\n");
|