@quolu/lattice 0.1.0

package/sensor/dist/installer/targets/claude.js

@@ -0,0 +1,454 @@
+"use strict";
+/**
+ * Claude Code target. Writes:
+ *
+ *   - MCP server entry to `~/.claude.json` (global = user scope, loads
+ *     in every project) or `./.mcp.json` (local = project scope, the
+ *     file Claude Code actually reads for a single project). See the
+ *     scope table at https://code.claude.com/docs/en/mcp.
+ *   - Permissions to `~/.claude/settings.json` (global) or
+ *     `./.claude/settings.json` (local), gated on `autoAllow`.
+ *   - Instructions to `~/.claude/CLAUDE.md` (global) or
+ *     `./.claude/CLAUDE.md` (local).
+ *
+ * Earlier versions wrote the local MCP entry to `./.claude.json` — a
+ * file Claude Code never reads — so the server silently never loaded
+ * until the user manually renamed it to `.mcp.json` (issue #207). We
+ * now write `./.mcp.json` and migrate any stale `./.claude.json` entry
+ * out of the way on install and uninstall.
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.claudeTarget = void 0;
+exports.writeMcpEntry = writeMcpEntry;
+exports.cleanupLegacyHooks = cleanupLegacyHooks;
+exports.removePromptHookEntry = removePromptHookEntry;
+exports.writePermissionsEntry = writePermissionsEntry;
+exports.writePromptHookEntry = writePromptHookEntry;
+exports.removeInstructionsEntry = removeInstructionsEntry;
+const fs = __importStar(require("fs"));
+const path = __importStar(require("path"));
+const os = __importStar(require("os"));
+const shared_1 = require("./shared");
+const instructions_template_1 = require("../instructions-template");
+function configDir(loc) {
+    return loc === 'global'
+        ? path.join(os.homedir(), '.claude')
+        : path.join(process.cwd(), '.claude');
+}
+function mcpJsonPath(loc) {
+    // global → ~/.claude.json (user scope: visible in every project).
+    // local  → ./.mcp.json (project scope: the ONLY project-level MCP
+    // file Claude Code reads — NOT ./.claude.json, which it ignores).
+    return loc === 'global'
+        ? path.join(os.homedir(), '.claude.json')
+        : path.join(process.cwd(), '.mcp.json');
+}
+/**
+ * Where pre-#207 installers wrote the local MCP entry. Claude Code
+ * never reads a project-level `./.claude.json`, so we migrate the
+ * codegraph entry out of it on install and strip it on uninstall.
+ * Only the project-local path is legacy — global `~/.claude.json` is
+ * the correct user-scope location and is left untouched.
+ */
+function legacyLocalMcpPath() {
+    return path.join(process.cwd(), '.claude.json');
+}
+function settingsJsonPath(loc) {
+    return path.join(configDir(loc), 'settings.json');
+}
+function instructionsPath(loc) {
+    return path.join(configDir(loc), 'CLAUDE.md');
+}
+class ClaudeCodeTarget {
+    id = 'claude';
+    displayName = 'Claude Code';
+    docsUrl = 'https://docs.claude.com/en/docs/claude-code';
+    supportsLocation(_loc) {
+        return true;
+    }
+    detect(loc) {
+        const mcpPath = mcpJsonPath(loc);
+        const config = (0, shared_1.readJsonFile)(mcpPath);
+        const alreadyConfigured = !!config.mcpServers?.codegraph;
+        // For "installed" we infer from the existence of either the dir
+        // (global) or the project marker file (local). Cheap and avoids
+        // shelling out to `claude --version`.
+        const installed = loc === 'global'
+            ? fs.existsSync(configDir(loc)) || fs.existsSync(mcpPath)
+            : fs.existsSync(mcpPath) || fs.existsSync(configDir(loc));
+        return { installed, alreadyConfigured, configPath: mcpPath };
+    }
+    install(loc, opts) {
+        const files = [];
+        // 1. MCP server entry
+        files.push(writeMcpEntry(loc));
+        // 1b. Migrate away any stale ./.claude.json left by a pre-#207
+        // local install, so the project isn't left with two competing
+        // (one dead) MCP configs.
+        if (loc === 'local') {
+            const migrated = cleanupLegacyLocalMcp();
+            if (migrated)
+                files.push(migrated);
+        }
+        // 2. Permissions (only when autoAllow)
+        if (opts.autoAllow) {
+            files.push(writePermissionsEntry(loc));
+        }
+        // 2b. Strip stale auto-sync hooks left by a pre-0.8 install. Those
+        // versions wrote `codegraph mark-dirty` / `sync-if-dirty` hooks to
+        // settings.json; both subcommands are gone from the CLI, so the
+        // Stop hook now fails every turn with "unknown command
+        // 'sync-if-dirty'". Cleaning up on install makes an upgrade
+        // self-healing. Only surfaced when something was actually removed.
+        const hookCleanup = cleanupLegacyHooks(loc);
+        if (hookCleanup.action === 'removed')
+            files.push(hookCleanup);
+        // 2c. Front-load prompt hook (Claude UserPromptSubmit). Opt-in via the
+        // installer prompt (default-yes): `promptHook === true` writes it;
+        // `=== false` strips any a prior install wrote so opting out round-trips
+        // (and an upgrade re-run honors the new choice); `undefined` leaves it
+        // untouched for callers that don't manage it.
+        if (opts.promptHook === true) {
+            files.push(writePromptHookEntry(loc));
+        }
+        else if (opts.promptHook === false) {
+            const removed = removePromptHookEntry(loc);
+            if (removed.action === 'removed')
+                files.push(removed);
+        }
+        // 3. CLAUDE.md instructions — the short marker-fenced CodeGraph
+        // block (#704). The MCP initialize instructions reach only the main
+        // agent; CLAUDE.md is what Task-tool subagents (and non-MCP
+        // harnesses) actually see, so the block carries the codegraph
+        // pointers there. Upsert self-heals a stale pre-#529 long block.
+        files.push((0, shared_1.upsertInstructionsEntry)(instructionsPath(loc)));
+        return { files };
+    }
+    uninstall(loc) {
+        const files = [];
+        // 1. MCP server entry
+        const mcpPath = mcpJsonPath(loc);
+        const config = (0, shared_1.readJsonFile)(mcpPath);
+        if (config.mcpServers?.codegraph) {
+            delete config.mcpServers.codegraph;
+            if (Object.keys(config.mcpServers).length === 0) {
+                delete config.mcpServers;
+            }
+            (0, shared_1.writeJsonFile)(mcpPath, config);
+            files.push({ path: mcpPath, action: 'removed' });
+        }
+        else {
+            files.push({ path: mcpPath, action: 'not-found' });
+        }
+        // 1b. Also strip the codegraph entry from a legacy ./.claude.json
+        // so uninstall fully reverses a pre-#207 local install.
+        if (loc === 'local') {
+            const migrated = cleanupLegacyLocalMcp();
+            if (migrated)
+                files.push(migrated);
+        }
+        // 2. Permissions
+        const settingsPath = settingsJsonPath(loc);
+        const settings = (0, shared_1.readJsonFile)(settingsPath);
+        if (Array.isArray(settings.permissions?.allow)) {
+            const before = settings.permissions.allow.length;
+            settings.permissions.allow = settings.permissions.allow.filter((p) => !p.startsWith('mcp__codegraph__'));
+            if (settings.permissions.allow.length !== before) {
+                if (settings.permissions.allow.length === 0) {
+                    delete settings.permissions.allow;
+                }
+                if (Object.keys(settings.permissions).length === 0) {
+                    delete settings.permissions;
+                }
+                (0, shared_1.writeJsonFile)(settingsPath, settings);
+                files.push({ path: settingsPath, action: 'removed' });
+            }
+            else {
+                files.push({ path: settingsPath, action: 'not-found' });
+            }
+        }
+        else {
+            files.push({ path: settingsPath, action: 'not-found' });
+        }
+        // 2b. Strip any stale auto-sync hooks a pre-0.8 install left in
+        // settings.json. The hook-cleanup step was lost when the installer
+        // moved to the per-target architecture; restoring it here means
+        // uninstall — and the npm `preuninstall` hook that drives it — fully
+        // reverses a legacy install.
+        const hookCleanup = cleanupLegacyHooks(loc);
+        if (hookCleanup.action === 'removed')
+            files.push(hookCleanup);
+        // 2c. Remove the front-load prompt hook this installer may have written.
+        const promptHookCleanup = removePromptHookEntry(loc);
+        if (promptHookCleanup.action === 'removed')
+            files.push(promptHookCleanup);
+        // 3. Instructions — strip the legacy CodeGraph block if present.
+        files.push(removeInstructionsEntry(loc));
+        return { files };
+    }
+    printConfig(loc) {
+        const target = mcpJsonPath(loc);
+        const snippet = JSON.stringify({ mcpServers: { codegraph: (0, shared_1.getMcpServerConfig)() } }, null, 2);
+        return `# Add to ${target}\n\n${snippet}\n`;
+    }
+    describePaths(loc) {
+        return [mcpJsonPath(loc), settingsJsonPath(loc), instructionsPath(loc)];
+    }
+}
+/**
+ * Per-file write helpers, exported so the legacy `config-writer.ts`
+ * shim can call only the named operation (writeMcpConfig writes ONLY
+ * the MCP entry, etc.) instead of `claudeTarget.install()` which
+ * writes all three files. Without this split the shims silently
+ * cause side effects callers don't expect.
+ */
+function writeMcpEntry(loc) {
+    const file = mcpJsonPath(loc);
+    const existing = (0, shared_1.readJsonFile)(file);
+    const before = existing.mcpServers?.codegraph;
+    const after = (0, shared_1.getMcpServerConfig)();
+    if ((0, shared_1.jsonDeepEqual)(before, after)) {
+        // Already exactly what we'd write — preserve byte-identical file.
+        return { path: file, action: 'unchanged' };
+    }
+    // 'created' here means: the file itself did not exist before this
+    // write. A pre-existing MCP JSON file (`~/.claude.json` globally,
+    // `./.mcp.json` locally) containing other MCP servers (no
+    // `codegraph` key) is 'updated', not 'created' — we're adding an
+    // entry to a file that was already there. Codex uses a different
+    // idiom (empty-content => 'created') because its config.toml is
+    // ours alone to manage.
+    const action = before ? 'updated' : (fs.existsSync(file) ? 'updated' : 'created');
+    if (!existing.mcpServers)
+        existing.mcpServers = {};
+    existing.mcpServers.codegraph = after;
+    (0, shared_1.writeJsonFile)(file, existing);
+    return { path: file, action };
+}
+/**
+ * Strip the codegraph entry from a legacy project-local
+ * `./.claude.json` (written by pre-#207 installers, which Claude Code
+ * never read). Surgical: only our `codegraph` key is removed; sibling
+ * MCP servers and any unrelated keys are preserved, and the file is
+ * deleted only when removal leaves it completely empty. Returns the
+ * file action for reporting, or `null` when there's nothing to migrate.
+ */
+function cleanupLegacyLocalMcp() {
+    const file = legacyLocalMcpPath();
+    if (!fs.existsSync(file))
+        return null;
+    const config = (0, shared_1.readJsonFile)(file);
+    if (!config.mcpServers?.codegraph)
+        return null;
+    delete config.mcpServers.codegraph;
+    if (Object.keys(config.mcpServers).length === 0)
+        delete config.mcpServers;
+    if (Object.keys(config).length === 0) {
+        try {
+            fs.unlinkSync(file);
+        }
+        catch { /* ignore */ }
+    }
+    else {
+        (0, shared_1.writeJsonFile)(file, config);
+    }
+    return { path: file, action: 'removed' };
+}
+/**
+ * True when a Claude Code hook `command` is one of the auto-sync hooks
+ * a pre-0.8 install wrote. Those installers added
+ * `PostToolUse(Edit|Write) → codegraph mark-dirty` and
+ * `Stop → codegraph sync-if-dirty` (local builds used the
+ * `npx @colbymchenry/codegraph …` form, which still contains the
+ * `codegraph <subcommand>` substring). Both subcommands were later
+ * removed from the CLI, so the Stop hook fails every turn with
+ * "unknown command 'sync-if-dirty'". Matching on the codegraph-scoped
+ * subcommand keeps unrelated user hooks (e.g. GitKraken's
+ * `gk ai hook run`) untouched.
+ */
+function isLegacyCodegraphHookCommand(command) {
+    if (typeof command !== 'string')
+        return false;
+    return (command.includes('codegraph mark-dirty') ||
+        command.includes('codegraph sync-if-dirty'));
+}
+/**
+ * The front-load prompt-hook command the installer writes into Claude's
+ * `UserPromptSubmit` (see writePromptHookEntry). Matched by substring so an
+ * `npx @colbymchenry/codegraph prompt-hook` form is recognized too.
+ */
+const PROMPT_HOOK_COMMAND = 'codegraph prompt-hook';
+function isPromptHookCommand(command) {
+    return typeof command === 'string' && command.includes(PROMPT_HOOK_COMMAND);
+}
+/**
+ * Remove stale codegraph auto-sync hooks from Claude `settings.json`.
+ *
+ * Surgical at the individual-command level: only entries matching
+ * `isLegacyCodegraphHookCommand` are dropped, so a sibling hook sharing
+ * a matcher group (or the Stop event) with ours survives. We prune a
+ * matcher group only once its `hooks` array is empty, an event only
+ * once it has no groups left, and `hooks` itself only once every event
+ * is gone — and none of that runs unless we actually removed a
+ * codegraph command, so a settings.json with no legacy hooks is left
+ * byte-for-byte untouched and reported `unchanged`.
+ *
+ * Exported so it can be unit-tested directly and reused by both
+ * `install` (an upgrade self-heals) and `uninstall`.
+ */
+function removeHookCommandsMatching(loc, match) {
+    const file = settingsJsonPath(loc);
+    if (!fs.existsSync(file))
+        return { path: file, action: 'not-found' };
+    const settings = (0, shared_1.readJsonFile)(file);
+    const hooks = settings.hooks;
+    if (!hooks || typeof hooks !== 'object' || Array.isArray(hooks)) {
+        return { path: file, action: 'unchanged' };
+    }
+    // Pass 1: drop matching command(s) from inside every matcher group.
+    let removedAny = false;
+    for (const event of Object.keys(hooks)) {
+        const groups = hooks[event];
+        if (!Array.isArray(groups))
+            continue;
+        for (const group of groups) {
+            if (!group || !Array.isArray(group.hooks))
+                continue;
+            const before = group.hooks.length;
+            group.hooks = group.hooks.filter((h) => !match(h?.command));
+            if (group.hooks.length !== before)
+                removedAny = true;
+        }
+    }
+    if (!removedAny)
+        return { path: file, action: 'unchanged' };
+    // Pass 2: prune empty matcher groups, then events with no groups left,
+    // then an empty top-level `hooks`. Guarded by `removedAny` so we never
+    // restructure a settings.json that had no matching hooks. Sibling hooks
+    // (a different command in the group, or a different event) survive.
+    for (const event of Object.keys(hooks)) {
+        const groups = hooks[event];
+        if (!Array.isArray(groups))
+            continue;
+        hooks[event] = groups.filter((g) => !(g && Array.isArray(g.hooks) && g.hooks.length === 0));
+        if (hooks[event].length === 0)
+            delete hooks[event];
+    }
+    if (Object.keys(hooks).length === 0)
+        delete settings.hooks;
+    (0, shared_1.writeJsonFile)(file, settings);
+    return { path: file, action: 'removed' };
+}
+/**
+ * Remove stale codegraph auto-sync hooks (`mark-dirty` / `sync-if-dirty`) that a
+ * pre-0.8 install wrote. Exported for direct unit-testing; reused by both
+ * `install` (an upgrade self-heals) and `uninstall`.
+ */
+function cleanupLegacyHooks(loc) {
+    return removeHookCommandsMatching(loc, isLegacyCodegraphHookCommand);
+}
+/**
+ * Remove the front-load `UserPromptSubmit` hook this installer writes (see
+ * writePromptHookEntry). Used by `uninstall`, and by `install` when the user
+ * opts out, so the choice round-trips.
+ */
+function removePromptHookEntry(loc) {
+    return removeHookCommandsMatching(loc, isPromptHookCommand);
+}
+function writePermissionsEntry(loc) {
+    const file = settingsJsonPath(loc);
+    const settings = (0, shared_1.readJsonFile)(file);
+    const created = !fs.existsSync(file);
+    if (!settings.permissions)
+        settings.permissions = {};
+    if (!Array.isArray(settings.permissions.allow))
+        settings.permissions.allow = [];
+    const want = (0, shared_1.getCodeGraphPermissions)();
+    const before = [...settings.permissions.allow];
+    for (const perm of want) {
+        if (!settings.permissions.allow.includes(perm)) {
+            settings.permissions.allow.push(perm);
+        }
+    }
+    if ((0, shared_1.jsonDeepEqual)(before, settings.permissions.allow) && !created) {
+        return { path: file, action: 'unchanged' };
+    }
+    (0, shared_1.writeJsonFile)(file, settings);
+    return { path: file, action: created ? 'created' : 'updated' };
+}
+/**
+ * Write the front-load `UserPromptSubmit` hook into Claude `settings.json` —
+ * a `command` hook that runs `codegraph prompt-hook`, which injects
+ * codegraph_explore context for structural prompts so the agent reliably uses
+ * the graph. Idempotent: if our command is already wired under UserPromptSubmit
+ * the file is left byte-for-byte untouched and reported `unchanged`. Sibling
+ * hooks (the user's own, or other events) are preserved. Opt-in — the installer
+ * only calls this when the user accepts the prompt (default-yes).
+ */
+function writePromptHookEntry(loc) {
+    const file = settingsJsonPath(loc);
+    const created = !fs.existsSync(file);
+    const settings = (0, shared_1.readJsonFile)(file);
+    if (!settings.hooks || typeof settings.hooks !== 'object' || Array.isArray(settings.hooks)) {
+        settings.hooks = {};
+    }
+    if (!Array.isArray(settings.hooks.UserPromptSubmit))
+        settings.hooks.UserPromptSubmit = [];
+    const already = settings.hooks.UserPromptSubmit.some((g) => g && Array.isArray(g.hooks) && g.hooks.some((h) => isPromptHookCommand(h?.command)));
+    if (already)
+        return { path: file, action: 'unchanged' };
+    settings.hooks.UserPromptSubmit.push({
+        hooks: [{ type: 'command', command: PROMPT_HOOK_COMMAND }],
+    });
+    (0, shared_1.writeJsonFile)(file, settings);
+    return { path: file, action: created ? 'created' : 'updated' };
+}
+/**
+ * Strip the marker-delimited CodeGraph block from CLAUDE.md if a prior
+ * install wrote one. Codegraph no longer maintains an instructions file
+ * (issue #529) — the MCP server's `initialize` instructions are the
+ * single source of truth — so both install (self-heal on upgrade) and
+ * uninstall call this. `removeMarkedSection` returns `not-found`/`kept`
+ * when there's nothing to strip; the install caller drops those from
+ * the report so a fresh install stays quiet.
+ */
+function removeInstructionsEntry(loc) {
+    const file = instructionsPath(loc);
+    const action = (0, shared_1.removeMarkedSection)(file, instructions_template_1.CODEGRAPH_SECTION_START, instructions_template_1.CODEGRAPH_SECTION_END);
+    return { path: file, action };
+}
+exports.claudeTarget = new ClaudeCodeTarget();
+//# sourceMappingURL=claude.js.map

package/sensor/dist/installer/targets/claude.js.map

@@ -0,0 +1 @@
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package/sensor/dist/installer/targets/codex.d.ts

@@ -0,0 +1,18 @@
+/**
+ * OpenAI Codex CLI target.
+ *
+ *   - MCP server entry to `~/.codex/config.toml` as the dotted-key
+ *     table `[mcp_servers.codegraph]`. TOML — not JSON — handled by
+ *     the narrow serializer in `./toml.ts`.
+ *   - Instructions to `~/.codex/AGENTS.md`.
+ *
+ * Codex CLI as of 2026-05 has no project-local config concept —
+ * everything lives under `~/.codex/`. `supportsLocation('local')`
+ * returns false; the orchestrator skips Codex when the user picks
+ * the local install location.
+ *
+ * No permissions concept.
+ */
+import { AgentTarget } from './types';
+export declare const codexTarget: AgentTarget;
+//# sourceMappingURL=codex.d.ts.map

package/sensor/dist/installer/targets/codex.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"codex.d.ts","sourceRoot":"","sources":["../../../src/installer/targets/codex.ts"],"names":[],"mappings":"AAAA;;;;;;;;;;;;;;GAcG;AAKH,OAAO,EACL,WAAW,EAKZ,MAAM,SAAS,CAAC;AAqJjB,eAAO,MAAM,WAAW,EAAE,WAA+B,CAAC"}