@quiltdata/benchling-webhook 0.9.1 → 0.9.2-20251217T055806Z

package/dist/lib/utils/ecs-service-discovery.js

@@ -43,6 +43,9 @@ var __importStar = (this && this.__importStar) || (function () {
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.discoverECSServiceLogGroups = discoverECSServiceLogGroups;
 exports.discoverECSServices = discoverECSServices;
+exports.discoverAPIGatewayLogs = discoverAPIGatewayLogs;
+exports.discoverAPIGatewayLogGroups = discoverAPIGatewayLogGroups;
+exports.restartECSServices = restartECSServices;
 /**
  * Discover all ECS services in a CloudFormation stack and their log groups
  *
@@ -200,4 +203,320 @@ async function discoverECSServices(stackName, region, awsProfile) {
         return [];
     }
 }
+/**
+ * Discover API Gateway APIs (both REST v1 and HTTP v2) in a CloudFormation stack and their log groups
+ *
+ * @param stackNameOrArn - CloudFormation stack name or ARN
+ * @param region - AWS region
+ * @param awsProfile - Optional AWS profile name
+ * @returns Array of API Gateway log information
+ */
+async function discoverAPIGatewayLogs(stackNameOrArn, region, awsProfile) {
+    try {
+        const { CloudFormationClient, DescribeStackResourcesCommand } = await Promise.resolve().then(() => __importStar(require("@aws-sdk/client-cloudformation")));
+        const { ApiGatewayV2Client, GetStageCommand: GetStageV2Command, GetApiCommand: GetApiV2Command } = await Promise.resolve().then(() => __importStar(require("@aws-sdk/client-apigatewayv2")));
+        const { APIGatewayClient, GetStageCommand: GetStageV1Command, GetRestApiCommand } = await Promise.resolve().then(() => __importStar(require("@aws-sdk/client-api-gateway")));
+        // Configure AWS SDK clients
+        const clientConfig = { region };
+        if (awsProfile) {
+            const { fromIni: fromIniImport } = await Promise.resolve().then(() => __importStar(require("@aws-sdk/credential-providers")));
+            clientConfig.credentials = fromIniImport({ profile: awsProfile });
+        }
+        const cfClient = new CloudFormationClient(clientConfig);
+        const apigwV2Client = new ApiGatewayV2Client(clientConfig);
+        const apigwV1Client = new APIGatewayClient(clientConfig);
+        // Find API Gateway resources in stack (accepts both ARN and name)
+        const resourcesCommand = new DescribeStackResourcesCommand({
+            StackName: stackNameOrArn,
+        });
+        const resourcesResponse = await cfClient.send(resourcesCommand);
+        // Find both REST API v1 and HTTP API v2 resources
+        const restApis = resourcesResponse.StackResources?.filter((r) => r.ResourceType === "AWS::ApiGateway::RestApi") || [];
+        const httpApis = resourcesResponse.StackResources?.filter((r) => r.ResourceType === "AWS::ApiGatewayV2::Api") || [];
+        if (restApis.length === 0 && httpApis.length === 0) {
+            return [];
+        }
+        const apiInfos = [];
+        // Process REST API v1 resources
+        for (const apiResource of restApis) {
+            const apiId = apiResource.PhysicalResourceId;
+            if (!apiId)
+                continue;
+            try {
+                // Get API name
+                const apiCommand = new GetRestApiCommand({ restApiId: apiId });
+                const apiResponse = await apigwV1Client.send(apiCommand);
+                const apiName = apiResponse.name || apiId;
+                // Find stages for this REST API
+                const stageResources = resourcesResponse.StackResources?.filter((r) => r.ResourceType === "AWS::ApiGateway::Stage" &&
+                    r.PhysicalResourceId?.includes(apiId)) || [];
+                let accessLogGroup;
+                let executionLogGroup;
+                // Check each stage for log configuration
+                for (const stageResource of stageResources) {
+                    // For REST API, stage name is the logical resource ID or extracted from physical ID
+                    const stageName = stageResource.PhysicalResourceId?.split("/").pop();
+                    if (!stageName)
+                        continue;
+                    try {
+                        const stageCommand = new GetStageV1Command({
+                            restApiId: apiId,
+                            stageName: stageName,
+                        });
+                        const stageResponse = await apigwV1Client.send(stageCommand);
+                        // Access logs
+                        if (stageResponse.accessLogSettings?.destinationArn) {
+                            const logGroupMatch = stageResponse.accessLogSettings.destinationArn.match(/log-group:([^:]+)/);
+                            if (logGroupMatch) {
+                                accessLogGroup = logGroupMatch[1];
+                            }
+                        }
+                        // Execution logs (CloudWatch Logs for REST API)
+                        if (stageResponse.methodSettings?.["*/*"]?.loggingLevel) {
+                            // REST API execution logs use this pattern
+                            executionLogGroup = `API-Gateway-Execution-Logs_${apiId}/${stageName}`;
+                        }
+                    }
+                    catch {
+                        // Skip this stage if we can't get its configuration
+                        continue;
+                    }
+                }
+                if (accessLogGroup || executionLogGroup) {
+                    apiInfos.push({
+                        apiId,
+                        apiName,
+                        accessLogGroup,
+                        executionLogGroup,
+                    });
+                }
+            }
+            catch {
+                // Skip this API if we can't get its details
+                continue;
+            }
+        }
+        // Process HTTP API v2 resources
+        for (const apiResource of httpApis) {
+            const apiId = apiResource.PhysicalResourceId;
+            if (!apiId)
+                continue;
+            try {
+                // Get API name
+                const apiCommand = new GetApiV2Command({ ApiId: apiId });
+                const apiResponse = await apigwV2Client.send(apiCommand);
+                const apiName = apiResponse.Name || apiId;
+                // Find stages for this HTTP API
+                // Note: For HTTP API v2, stage PhysicalResourceId is just the stage name (e.g., "$default", "prod")
+                // We need to try all stages since we can't filter by API ID
+                const stageResources = resourcesResponse.StackResources?.filter((r) => r.ResourceType === "AWS::ApiGatewayV2::Stage") || [];
+                let accessLogGroup;
+                let executionLogGroup;
+                // Check each stage for log configuration
+                for (const stageResource of stageResources) {
+                    // For HTTP API v2, the PhysicalResourceId is just the stage name
+                    const stageName = stageResource.PhysicalResourceId;
+                    if (!stageName)
+                        continue;
+                    try {
+                        const stageCommand = new GetStageV2Command({
+                            ApiId: apiId,
+                            StageName: stageName,
+                        });
+                        const stageResponse = await apigwV2Client.send(stageCommand);
+                        // Access logs
+                        if (stageResponse.AccessLogSettings?.DestinationArn) {
+                            // ARN format: arn:aws:logs:region:account:log-group:log-group-name
+                            // or arn:aws:logs:region:account:log-group:log-group-name:*
+                            const destinationArn = stageResponse.AccessLogSettings.DestinationArn;
+                            const logGroupMatch = destinationArn.match(/log-group:([^:*]+)/);
+                            if (logGroupMatch) {
+                                accessLogGroup = logGroupMatch[1];
+                            }
+                        }
+                        // Execution logs (if detailed metrics are enabled)
+                        if (stageResponse.DefaultRouteSettings?.DetailedMetricsEnabled) {
+                            // HTTP API v2 execution logs are automatically created with pattern
+                            executionLogGroup = `API-Gateway-Execution-Logs_${apiId}/${stageName}`;
+                        }
+                        // If we found logs for this stage, we can stop checking other stages
+                        if (accessLogGroup || executionLogGroup) {
+                            break;
+                        }
+                    }
+                    catch (_stageError) {
+                        // This stage might belong to a different API, continue trying others
+                        continue;
+                    }
+                }
+                if (accessLogGroup || executionLogGroup) {
+                    apiInfos.push({
+                        apiId,
+                        apiName,
+                        accessLogGroup,
+                        executionLogGroup,
+                    });
+                }
+            }
+            catch {
+                // Skip this API if we can't get its details
+                continue;
+            }
+        }
+        return apiInfos;
+    }
+    catch (error) {
+        console.warn(`Could not discover API Gateway logs: ${error.message}`);
+        return [];
+    }
+}
+/**
+ * Discover API Gateway log groups from a CloudFormation stack (simplified version for logs command)
+ *
+ * @param stackNameOrArn - CloudFormation stack name or ARN
+ * @param region - AWS region
+ * @param awsProfile - Optional AWS profile name
+ * @returns Map of log types to log group names
+ */
+async function discoverAPIGatewayLogGroups(stackNameOrArn, region, awsProfile) {
+    const apiInfos = await discoverAPIGatewayLogs(stackNameOrArn, region, awsProfile);
+    const logGroups = {};
+    for (const apiInfo of apiInfos) {
+        if (apiInfo.accessLogGroup) {
+            logGroups["api-gateway-access"] = apiInfo.accessLogGroup;
+        }
+        if (apiInfo.executionLogGroup) {
+            logGroups["api-gateway-execution"] = apiInfo.executionLogGroup;
+        }
+    }
+    // Fallback: Also search for log groups directly by logical ID patterns
+    // This handles cases where log groups are created separately and not discoverable via stage settings
+    if (Object.keys(logGroups).length === 0) {
+        const directLogGroups = await discoverLogGroupsDirectly(stackNameOrArn, region, awsProfile);
+        Object.assign(logGroups, directLogGroups);
+    }
+    return logGroups;
+}
+/**
+ * Restart all ECS services in a CloudFormation stack to pick up updated secrets
+ *
+ * @param stackNameOrArn - CloudFormation stack name or ARN
+ * @param region - AWS region
+ * @param awsProfile - Optional AWS profile name
+ * @returns Array of restarted service names
+ */
+async function restartECSServices(stackNameOrArn, region, awsProfile) {
+    try {
+        const { CloudFormationClient, DescribeStackResourcesCommand } = await Promise.resolve().then(() => __importStar(require("@aws-sdk/client-cloudformation")));
+        const { ECSClient, DescribeServicesCommand, UpdateServiceCommand } = await Promise.resolve().then(() => __importStar(require("@aws-sdk/client-ecs")));
+        // Configure AWS SDK clients
+        const clientConfig = { region };
+        if (awsProfile) {
+            const { fromIni: fromIniImport } = await Promise.resolve().then(() => __importStar(require("@aws-sdk/credential-providers")));
+            clientConfig.credentials = fromIniImport({ profile: awsProfile });
+        }
+        const cfClient = new CloudFormationClient(clientConfig);
+        const ecsClient = new ECSClient(clientConfig);
+        // Find ECS resources in stack
+        const resourcesCommand = new DescribeStackResourcesCommand({
+            StackName: stackNameOrArn,
+        });
+        const resourcesResponse = await cfClient.send(resourcesCommand);
+        const ecsServiceResources = resourcesResponse.StackResources?.filter((r) => r.ResourceType === "AWS::ECS::Service") || [];
+        if (ecsServiceResources.length === 0) {
+            return [];
+        }
+        // Get cluster name
+        const clusterResource = resourcesResponse.StackResources?.find((r) => r.ResourceType === "AWS::ECS::Cluster");
+        const clusterName = clusterResource?.PhysicalResourceId;
+        if (!clusterName) {
+            console.warn("Could not find ECS cluster in stack");
+            return [];
+        }
+        // Get service ARNs
+        const serviceArns = ecsServiceResources
+            .map((s) => s.PhysicalResourceId)
+            .filter((arn) => !!arn);
+        if (serviceArns.length === 0) {
+            return [];
+        }
+        // Describe all services to get their names
+        const servicesCommand = new DescribeServicesCommand({
+            cluster: clusterName,
+            services: serviceArns,
+        });
+        const servicesResponse = await ecsClient.send(servicesCommand);
+        const restartedServices = [];
+        // Restart each service
+        for (const svc of servicesResponse.services || []) {
+            if (!svc.serviceName)
+                continue;
+            try {
+                await ecsClient.send(new UpdateServiceCommand({
+                    cluster: clusterName,
+                    service: svc.serviceName,
+                    forceNewDeployment: true,
+                }));
+                restartedServices.push(svc.serviceName);
+            }
+            catch (error) {
+                console.warn(`Failed to restart service ${svc.serviceName}: ${error.message}`);
+            }
+        }
+        return restartedServices;
+    }
+    catch (error) {
+        console.warn(`Could not restart ECS services: ${error.message}`);
+        return [];
+    }
+}
+/**
+ * Discover log groups directly from CloudFormation stack resources
+ * This is a fallback for integrated stacks where log groups are created separately
+ *
+ * @param stackNameOrArn - CloudFormation stack name or ARN
+ * @param region - AWS region
+ * @param awsProfile - Optional AWS profile name
+ * @returns Map of log types to log group names
+ */
+async function discoverLogGroupsDirectly(stackNameOrArn, region, awsProfile) {
+    try {
+        const { CloudFormationClient, DescribeStackResourcesCommand } = await Promise.resolve().then(() => __importStar(require("@aws-sdk/client-cloudformation")));
+        // Configure AWS SDK client
+        const clientConfig = { region };
+        if (awsProfile) {
+            const { fromIni: fromIniImport } = await Promise.resolve().then(() => __importStar(require("@aws-sdk/credential-providers")));
+            clientConfig.credentials = fromIniImport({ profile: awsProfile });
+        }
+        const cfClient = new CloudFormationClient(clientConfig);
+        // Get all stack resources
+        const resourcesCommand = new DescribeStackResourcesCommand({
+            StackName: stackNameOrArn,
+        });
+        const resourcesResponse = await cfClient.send(resourcesCommand);
+        // Find log group resources
+        const logGroupResources = resourcesResponse.StackResources?.filter((r) => r.ResourceType === "AWS::Logs::LogGroup") || [];
+        const logGroups = {};
+        // Match log groups by logical ID patterns
+        for (const resource of logGroupResources) {
+            const logicalId = resource.LogicalResourceId || "";
+            const physicalId = resource.PhysicalResourceId;
+            if (!physicalId)
+                continue;
+            // Match API Gateway access log patterns
+            if (logicalId.match(/Api.*Log/i) || logicalId.match(/Benchling.*Log/i) || physicalId.match(/api.*access/i)) {
+                logGroups["api-gateway-access"] = physicalId;
+            }
+            // Match API Gateway execution log patterns
+            else if (logicalId.match(/Execution.*Log/i) || physicalId.match(/execution/i)) {
+                logGroups["api-gateway-execution"] = physicalId;
+            }
+        }
+        return logGroups;
+    }
+    catch (error) {
+        console.warn(`Could not discover log groups directly: ${error.message}`);
+        return {};
+    }
+}
 //# sourceMappingURL=ecs-service-discovery.js.map

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package/dist/lib/utils/stack-inference.d.ts

@@ -56,6 +56,7 @@ export interface StackResourceMap {
  * - UserAthenaResultsBucketPolicy (AWS::S3::BucketPolicy)
  * - T4BucketReadRole (AWS::IAM::Role)
  * - T4BucketWriteRole (AWS::IAM::Role)
+ * - BenchlingSecret (AWS::SecretsManager::Secret)
  */
 export interface DiscoveredQuiltResources {
     athenaUserWorkgroup?: string;
@@ -66,6 +67,7 @@ export interface DiscoveredQuiltResources {
     athenaResultsBucketPolicy?: string;
     readRoleArn?: string;
     writeRoleArn?: string;
+    benchlingSecretArn?: string;
 }
 /**
  * Get stack resources (physical resource IDs)
@@ -95,7 +97,7 @@ export declare function validateRoleArn(arn: string): boolean;
  */
 export declare function toRoleArn(roleNameOrArn: string, account: string): string;
 /**
- * Extract Athena workgroups, IAM policies, Glue databases, S3 buckets, and IAM roles from stack resources
+ * Extract Athena workgroups, IAM policies, Glue databases, S3 buckets, IAM roles, and Secrets Manager secrets from stack resources
  *
  * Target resources:
  * - UserAthenaNonManagedRoleWorkgroup (AWS::Athena::WorkGroup)
@@ -106,13 +108,14 @@ export declare function toRoleArn(roleNameOrArn: string, account: string): strin
  * - UserAthenaResultsBucketPolicy (AWS::S3::BucketPolicy)
  * - T4BucketReadRole (AWS::IAM::Role)
  * - T4BucketWriteRole (AWS::IAM::Role)
+ * - BenchlingSecret (AWS::SecretsManager::Secret)
  *
  * @param resources Stack resource map from getStackResources
  * @param account Optional AWS account ID for converting role names to ARNs
- * @param region Optional AWS region (currently unused but reserved for future use)
+ * @param region Optional AWS region for constructing Secrets Manager ARNs
  * @returns Discovered Quilt resources
  */
-export declare function extractQuiltResources(resources: StackResourceMap, account?: string, _region?: string): DiscoveredQuiltResources;
+export declare function extractQuiltResources(resources: StackResourceMap, account?: string, region?: string): DiscoveredQuiltResources;
 /**
  * Fetch JSON from a URL using native Node.js modules
  */

package/dist/lib/utils/stack-inference.d.ts.map

@@ -1 +1 @@
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package/dist/lib/utils/stack-inference.js

@@ -123,7 +123,7 @@ function toRoleArn(roleNameOrArn, account) {
     return `arn:aws:iam::${account}:role/${roleNameOrArn}`;
 }
 /**
- * Extract Athena workgroups, IAM policies, Glue databases, S3 buckets, and IAM roles from stack resources
+ * Extract Athena workgroups, IAM policies, Glue databases, S3 buckets, IAM roles, and Secrets Manager secrets from stack resources
  *
  * Target resources:
  * - UserAthenaNonManagedRoleWorkgroup (AWS::Athena::WorkGroup)
@@ -134,13 +134,14 @@ function toRoleArn(roleNameOrArn, account) {
  * - UserAthenaResultsBucketPolicy (AWS::S3::BucketPolicy)
  * - T4BucketReadRole (AWS::IAM::Role)
  * - T4BucketWriteRole (AWS::IAM::Role)
+ * - BenchlingSecret (AWS::SecretsManager::Secret)
  *
  * @param resources Stack resource map from getStackResources
  * @param account Optional AWS account ID for converting role names to ARNs
- * @param region Optional AWS region (currently unused but reserved for future use)
+ * @param region Optional AWS region for constructing Secrets Manager ARNs
  * @returns Discovered Quilt resources
  */
-function extractQuiltResources(resources, account, _region) {
+function extractQuiltResources(resources, account, region) {
     // Map logical resource IDs to discovered resource properties
     const resourceMapping = {
         UserAthenaNonManagedRoleWorkgroup: "athenaUserWorkgroup",
@@ -151,6 +152,7 @@ function extractQuiltResources(resources, account, _region) {
         UserAthenaResultsBucketPolicy: "athenaResultsBucketPolicy",
         T4BucketReadRole: "readRoleArn",
         T4BucketWriteRole: "writeRoleArn",
+        BenchlingSecret: "benchlingSecretArn",
     };
     const discovered = {};
     // Extract physical resource IDs for each target resource
@@ -172,6 +174,22 @@ function extractQuiltResources(resources, account, _region) {
                     console.warn(`Warning: Cannot convert role name to ARN for ${logicalId}: ${physicalId} (missing account ID)`);
                 }
             }
+            else if (propertyName === "benchlingSecretArn") {
+                // For Secrets Manager secrets, convert secret name to ARN if needed
+                if (physicalId.startsWith("arn:aws:secretsmanager:")) {
+                    // Already a full ARN
+                    discovered[propertyName] = physicalId;
+                }
+                else if (account && region) {
+                    // Convert secret name to ARN using account ID and region
+                    // ARN format: arn:aws:secretsmanager:region:account:secret:secret-name
+                    discovered[propertyName] = `arn:aws:secretsmanager:${region}:${account}:secret:${physicalId}`;
+                }
+                else {
+                    // Log warning if we can't convert - need account ID and region
+                    console.warn(`Warning: Cannot convert secret name to ARN for ${logicalId}: ${physicalId} (missing account ID or region)`);
+                }
+            }
             else {
                 discovered[propertyName] = physicalId;
             }

package/dist/lib/utils/stack-inference.js.map

@@ -1 +1 @@
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package/dist/lib/wizard/phase3-parameter-collection.d.ts.map

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