@quiltdata/benchling-webhook 0.9.0-20251126T014959Z → 0.9.0-20251127T032721Z

package/dist/lib/rest-api-gateway.js

@@ -0,0 +1,257 @@
+"use strict";
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.RestApiGateway = void 0;
+const cdk = __importStar(require("aws-cdk-lib"));
+const apigateway = __importStar(require("aws-cdk-lib/aws-apigateway"));
+const ec2 = __importStar(require("aws-cdk-lib/aws-ec2"));
+const elbv2 = __importStar(require("aws-cdk-lib/aws-elasticloadbalancingv2"));
+const logs = __importStar(require("aws-cdk-lib/aws-logs"));
+const lambda = __importStar(require("aws-cdk-lib/aws-lambda"));
+const iam = __importStar(require("aws-cdk-lib/aws-iam"));
+class RestApiGateway {
+    constructor(scope, id, props) {
+        // Access logs for REST API
+        this.logGroup = new logs.LogGroup(scope, "ApiGatewayAccessLogs", {
+            logGroupName: "/aws/apigateway/benchling-webhook-rest",
+            retention: logs.RetentionDays.ONE_WEEK,
+            removalPolicy: cdk.RemovalPolicy.DESTROY,
+        });
+        // Create Network Load Balancer for VPC Link integration
+        // REST API Gateway requires NLB (not ALB) for private integration
+        this.nlb = new elbv2.NetworkLoadBalancer(scope, "NetworkLoadBalancer", {
+            vpc: props.vpc,
+            internetFacing: false,
+            vpcSubnets: {
+                subnetType: ec2.SubnetType.PRIVATE_WITH_EGRESS,
+            },
+        });
+        // Create target group for ECS service
+        const targetGroup = new elbv2.NetworkTargetGroup(scope, "TargetGroup", {
+            vpc: props.vpc,
+            port: 8080,
+            protocol: elbv2.Protocol.TCP,
+            targetType: elbv2.TargetType.IP,
+            healthCheck: {
+                enabled: true,
+                protocol: elbv2.Protocol.HTTP,
+                path: "/health",
+                interval: cdk.Duration.seconds(30),
+                timeout: cdk.Duration.seconds(10),
+                healthyThresholdCount: 2,
+                unhealthyThresholdCount: 3,
+            },
+            deregistrationDelay: cdk.Duration.seconds(30),
+        });
+        // Add listener to NLB
+        this.nlb.addListener("Listener", {
+            port: 80,
+            protocol: elbv2.Protocol.TCP,
+            defaultTargetGroups: [targetGroup],
+        });
+        // Register ECS service with target group
+        if ("attachToNetworkTargetGroup" in props.ecsService) {
+            props.ecsService.attachToNetworkTargetGroup(targetGroup);
+        }
+        // Create VPC Link with NLB as target
+        this.vpcLink = new apigateway.VpcLink(scope, "VpcLink", {
+            targets: [this.nlb],
+            vpcLinkName: "benchling-webhook-vpclink",
+            description: "VPC Link for Benchling Webhook REST API",
+        });
+        // Parse IP allowlist from config
+        const ipAllowList = props.config.security?.webhookAllowList
+            ?.split(",")
+            .map((ip) => ip.trim())
+            .filter((ip) => ip.length > 0) || [];
+        const verificationEnabled = props.config.security?.enableVerification !== false;
+        const benchlingSecretArn = props.config.benchling.secretArn;
+        if (!benchlingSecretArn) {
+            throw new Error("Benchling secret ARN is required to configure the Lambda authorizer");
+        }
+        // Build resource policy for IP whitelisting
+        const resourcePolicy = this.buildResourcePolicy(ipAllowList);
+        // Lambda authorizer for webhook verification
+        this.authorizerLogGroup = new logs.LogGroup(scope, "WebhookAuthorizerLogGroup", {
+            retention: logs.RetentionDays.ONE_WEEK,
+            removalPolicy: cdk.RemovalPolicy.DESTROY,
+        });
+        const authorizerCode = process.env.NODE_ENV === "test"
+            ? lambda.Code.fromInline("def handler(event, context):\n    return {}")
+            : lambda.Code.fromAsset(".", {
+                bundling: {
+                    image: lambda.Runtime.PYTHON_3_11.bundlingImage,
+                    command: [
+                        "bash",
+                        "-c",
+                        [
+                            "pip install -q -r /asset-input/lambda/authorizer/requirements.txt -t /asset-output",
+                            "cp /asset-input/docker/src/lambda_authorizer.py /asset-output/index.py",
+                        ].join(" && "),
+                    ],
+                },
+            });
+        this.authorizer = new lambda.Function(scope, "WebhookAuthorizerFunction", {
+            runtime: lambda.Runtime.PYTHON_3_11,
+            handler: "index.handler",
+            memorySize: 128,
+            timeout: cdk.Duration.seconds(10),
+            description: "Benchling webhook signature verification (defense-in-depth)",
+            environment: {
+                BENCHLING_SECRET_ARN: benchlingSecretArn,
+            },
+            code: authorizerCode,
+            logGroup: this.authorizerLogGroup,
+        });
+        this.authorizer.addToRolePolicy(new iam.PolicyStatement({
+            actions: ["secretsmanager:GetSecretValue"],
+            resources: [benchlingSecretArn],
+        }));
+        const requestAuthorizer = verificationEnabled
+            ? new apigateway.RequestAuthorizer(scope, "WebhookRequestAuthorizer", {
+                handler: this.authorizer,
+                identitySources: [
+                    apigateway.IdentitySource.header("webhook-id"),
+                    apigateway.IdentitySource.header("webhook-signature"),
+                    apigateway.IdentitySource.header("webhook-timestamp"),
+                ],
+                resultsCacheTtl: cdk.Duration.seconds(0),
+            })
+            : undefined;
+        // Create REST API
+        this.api = new apigateway.RestApi(scope, "BenchlingWebhookRestAPI", {
+            restApiName: "BenchlingWebhookRestAPI",
+            description: "REST API for Benchling webhook integration with IP whitelisting (v1.0.0+)",
+            policy: resourcePolicy,
+            deployOptions: {
+                stageName: "prod",
+                accessLogDestination: new apigateway.LogGroupLogDestination(this.logGroup),
+                accessLogFormat: apigateway.AccessLogFormat.jsonWithStandardFields({
+                    caller: true,
+                    httpMethod: true,
+                    ip: true,
+                    protocol: true,
+                    requestTime: true,
+                    resourcePath: true,
+                    responseLength: true,
+                    status: true,
+                    user: true,
+                }),
+                loggingLevel: apigateway.MethodLoggingLevel.INFO,
+                dataTraceEnabled: true,
+            },
+            endpointConfiguration: {
+                types: [apigateway.EndpointType.REGIONAL],
+            },
+        });
+        const createIntegration = (path) => new apigateway.Integration({
+            type: apigateway.IntegrationType.HTTP_PROXY,
+            integrationHttpMethod: "ANY",
+            uri: `http://${this.nlb.loadBalancerDnsName}:80${path}`,
+            options: {
+                connectionType: apigateway.ConnectionType.VPC_LINK,
+                vpcLink: this.vpcLink,
+            },
+        });
+        const webhookMethodOptions = requestAuthorizer
+            ? {
+                authorizer: requestAuthorizer,
+                authorizationType: apigateway.AuthorizationType.CUSTOM,
+            }
+            : undefined;
+        // Webhook endpoints secured by Lambda authorizer
+        const eventResource = this.api.root.addResource("event");
+        eventResource.addMethod("ANY", createIntegration("/event"), webhookMethodOptions);
+        const lifecycleResource = this.api.root.addResource("lifecycle");
+        lifecycleResource.addMethod("ANY", createIntegration("/lifecycle"), webhookMethodOptions);
+        const canvasResource = this.api.root.addResource("canvas");
+        canvasResource.addMethod("ANY", createIntegration("/canvas"), webhookMethodOptions);
+        // Health endpoints remain unauthenticated
+        const healthResource = this.api.root.addResource("health");
+        healthResource.addMethod("GET", createIntegration("/health"));
+        healthResource.addResource("ready").addMethod("GET", createIntegration("/health/ready"));
+        healthResource.addResource("live").addMethod("GET", createIntegration("/health/live"));
+        // Output IP filtering status
+        if (ipAllowList.length > 0) {
+            console.log(`IP Whitelisting enabled: ${ipAllowList.length} CIDR blocks`);
+            ipAllowList.forEach((ip) => console.log(`  - ${ip}`));
+        }
+        else {
+            console.log("IP Whitelisting disabled: all IPs allowed");
+        }
+    }
+    /**
+     * Build IAM resource policy for IP whitelisting
+     *
+     * If ipAllowList is empty, allow all IPs.
+     * Otherwise, only allow requests from specified IP addresses/CIDR blocks.
+     */
+    buildResourcePolicy(ipAllowList) {
+        if (ipAllowList.length === 0) {
+            // No IP filtering - allow all
+            return undefined;
+        }
+        return new iam.PolicyDocument({
+            statements: [
+                // Allow requests from whitelisted IPs
+                new iam.PolicyStatement({
+                    effect: iam.Effect.ALLOW,
+                    principals: [new iam.AnyPrincipal()],
+                    actions: ["execute-api:Invoke"],
+                    resources: ["execute-api:/*"],
+                    conditions: {
+                        IpAddress: {
+                            "aws:SourceIp": ipAllowList,
+                        },
+                    },
+                }),
+                // Explicitly deny requests from non-whitelisted IPs
+                new iam.PolicyStatement({
+                    effect: iam.Effect.DENY,
+                    principals: [new iam.AnyPrincipal()],
+                    actions: ["execute-api:Invoke"],
+                    resources: ["execute-api:/*"],
+                    conditions: {
+                        NotIpAddress: {
+                            "aws:SourceIp": ipAllowList,
+                        },
+                    },
+                }),
+            ],
+        });
+    }
+}
+exports.RestApiGateway = RestApiGateway;
+//# sourceMappingURL=rest-api-gateway.js.map

package/dist/lib/rest-api-gateway.js.map

@@ -0,0 +1 @@
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package/dist/lib/types/config.d.ts

@@ -346,11 +346,46 @@ export interface DeploymentConfig {
      * @default "latest"
      */
     imageTag?: string;
+    /**
+     * VPC configuration for ECS deployment
+     * If not specified, a new VPC will be created with private subnets and NAT Gateway
+     *
+     * @example { vpcId: "vpc-0123456789abcdef0" }
+     */
+    vpc?: VpcConfig;
+}
+/**
+ * VPC Configuration
+ *
+ * Configures VPC for ECS deployment. Supports both existing VPC (by ID) and auto-creation.
+ */
+export interface VpcConfig {
+    /**
+     * Existing VPC ID to use (optional)
+     *
+     * If specified, the VPC must have:
+     * - Private subnets with NAT Gateway for outbound internet access
+     * - Proper routing for ECS tasks
+     *
+     * If not specified, a new VPC will be created matching the Quilt production architecture:
+     * - 2 Availability Zones
+     * - Public subnets (for NAT Gateways)
+     * - Private subnets with NAT Gateway (for ECS tasks)
+     *
+     * @example "vpc-0123456789abcdef0"
+     */
+    vpcId?: string;
+    /**
+     * Whether to create a new VPC if vpcId is not specified
+     *
+     * @default true
+     */
+    createIfMissing?: boolean;
 }
 /**
  * Logging Configuration
  *
- * Python logging level for Flask application.
+ * Python logging level for FastAPI application.
  */
 export interface LoggingConfig {
     /**
@@ -502,6 +537,14 @@ export interface DeploymentRecord {
      * @example "abc123f"
      */
     commit?: string;
+    /**
+     * ARN of the Lambda authorizer function (v0.9.1+)
+     */
+    authorizerArn?: string;
+    /**
+     * CloudWatch log group for Lambda authorizer (v0.9.1+)
+     */
+    authorizerLogGroup?: string;
     /**
      * Additional metadata (extensible)
      */
@@ -582,7 +625,7 @@ export interface ProfileOptions {
 export declare const ProfileConfigSchema: {
     readonly $schema: "http://json-schema.org/draft-07/schema#";
     readonly title: "ProfileConfig";
-    readonly description: "Benchling Webhook Profile Configuration (v0.7.0)";
+    readonly description: "Benchling Webhook Profile Configuration";
     readonly type: "object";
     readonly required: readonly ["quilt", "benchling", "packages", "deployment", "_metadata"];
     readonly properties: {

package/dist/lib/types/config.d.ts.map

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package/dist/lib/types/config.js

@@ -18,7 +18,7 @@ exports.DeploymentHistorySchema = exports.ProfileConfigSchema = void 0;
 exports.ProfileConfigSchema = {
     $schema: "http://json-schema.org/draft-07/schema#",
     title: "ProfileConfig",
-    description: "Benchling Webhook Profile Configuration (v0.7.0)",
+    description: "Benchling Webhook Profile Configuration",
     type: "object",
     required: ["quilt", "benchling", "packages", "deployment", "_metadata"],
     properties: {

package/dist/lib/types/config.js.map

@@ -1 +1 @@
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package/dist/lib/xdg-base.d.ts

@@ -1,5 +1,5 @@
 /**
- * XDG Base Abstract Class (v0.7.0)
+ * XDG Base Abstract Class
  *
  * Abstract base class containing all shared business logic for configuration management.
  * Concrete implementations (XDGConfig, XDGTest) provide storage primitives.
@@ -234,6 +234,22 @@ export declare abstract class XDGBase implements IConfigStorage {
      * ```
      */
     getActiveDeployment(profile: string, stage: string): DeploymentRecord | null;
+    /**
+     * Clears the active deployment for a specific stage
+     *
+     * Removes the active deployment entry for the given stage, but keeps
+     * the deployment history intact.
+     *
+     * @param profile - Profile name
+     * @param stage - Stage name (e.g., "dev", "prod")
+     *
+     * @example
+     * ```typescript
+     * // Clear production deployment tracking after destroying the stack
+     * storage.clearDeployment("default", "prod");
+     * ```
+     */
+    clearDeployment(profile: string, stage: string): void;
     /**
      * Reads profile configuration with inheritance support
      *

package/dist/lib/xdg-base.d.ts.map

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package/dist/lib/xdg-base.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * XDG Base Abstract Class (v0.7.0)
+ * XDG Base Abstract Class
  *
  * Abstract base class containing all shared business logic for configuration management.
  * Concrete implementations (XDGConfig, XDGTest) provide storage primitives.
@@ -303,6 +303,35 @@ class XDGBase {
             return null;
         }
     }
+    /**
+     * Clears the active deployment for a specific stage
+     *
+     * Removes the active deployment entry for the given stage, but keeps
+     * the deployment history intact.
+     *
+     * @param profile - Profile name
+     * @param stage - Stage name (e.g., "dev", "prod")
+     *
+     * @example
+     * ```typescript
+     * // Clear production deployment tracking after destroying the stack
+     * storage.clearDeployment("default", "prod");
+     * ```
+     */
+    clearDeployment(profile, stage) {
+        try {
+            const deployments = this.getDeployments(profile);
+            // Remove active deployment for this stage
+            if (deployments.active[stage]) {
+                delete deployments.active[stage];
+                // Write updated deployments
+                this.writeDeploymentsRaw(profile, deployments);
+            }
+        }
+        catch (error) {
+            throw new Error(`Failed to clear deployment for profile "${profile}" stage "${stage}": ${error.message}`);
+        }
+    }
     // ====================================================================
     // Profile Inheritance (Business Logic)
     // ====================================================================

package/dist/lib/xdg-base.js.map

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package/dist/lib/xdg-config.d.ts

@@ -28,7 +28,7 @@
 import { ProfileConfig, DeploymentHistory } from "./types/config";
 import { XDGBase } from "./xdg-base";
 /**
- * XDG Configuration Manager (v0.7.0)
+ * XDG Configuration Manager
  *
  * Filesystem-based implementation extending XDGBase.
  * Manages profile-based configuration with deployment tracking.

package/dist/lib/xdg-config.js

@@ -33,7 +33,7 @@ const path_1 = require("path");
 const os_1 = require("os");
 const xdg_base_1 = require("./xdg-base");
 /**
- * XDG Configuration Manager (v0.7.0)
+ * XDG Configuration Manager
  *
  * Filesystem-based implementation extending XDGBase.
  * Manages profile-based configuration with deployment tracking.

package/dist/package.json

@@ -1,6 +1,6 @@
 {
     "name": "@quiltdata/benchling-webhook",
-    "version": "0.9.0-20251126T014959Z",
+    "version": "0.9.0-20251127T032721Z",
     "description": "AWS CDK deployment for Benchling webhook processing using Fargate - Deploy directly with npx",
     "main": "dist/lib/index.js",
     "types": "dist/lib/index.d.ts",
@@ -21,6 +21,9 @@
         "deploy:dev": "ts-node bin/cli.ts deploy --stage dev --profile dev",
         "deploy:prod": "ts-node bin/cli.ts deploy --stage prod",
         "deploy:notes": "bash scripts/release-notes.sh",
+        "destroy": "ts-node bin/cli.ts destroy",
+        "destroy:dev": "ts-node bin/cli.ts destroy --stage dev --profile dev",
+        "destroy:prod": "ts-node bin/cli.ts destroy --stage prod",
         "launch": "ts-node bin/xdg-launch.ts",
         "dev": "npm run launch -- --mode native --profile dev --verbose",
         "dev:docker": "npm run launch -- --mode docker-dev --profile dev --verbose",

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@quiltdata/benchling-webhook",
-  "version": "0.9.0-20251126T014959Z",
+  "version": "0.9.0-20251127T032721Z",
   "description": "AWS CDK deployment for Benchling webhook processing using Fargate - Deploy directly with npx",
   "main": "dist/lib/index.js",
   "types": "dist/lib/index.d.ts",
@@ -21,6 +21,9 @@
     "deploy:dev": "ts-node bin/cli.ts deploy --stage dev --profile dev",
     "deploy:prod": "ts-node bin/cli.ts deploy --stage prod",
     "deploy:notes": "bash scripts/release-notes.sh",
+    "destroy": "ts-node bin/cli.ts destroy",
+    "destroy:dev": "ts-node bin/cli.ts destroy --stage dev --profile dev",
+    "destroy:prod": "ts-node bin/cli.ts destroy --stage prod",
     "launch": "ts-node bin/xdg-launch.ts",
     "dev": "npm run launch -- --mode native --profile dev --verbose",
     "dev:docker": "npm run launch -- --mode docker-dev --profile dev --verbose",