@quiltdata/benchling-webhook 0.8.8 → 0.8.9

package/dist/lib/wizard/phase2-stack-query.js

@@ -14,6 +14,7 @@ Object.defineProperty(exports, "__esModule", { value: true });
 exports.runStackQuery = runStackQuery;
 const chalk_1 = __importDefault(require("chalk"));
 const infer_quilt_config_1 = require("../../bin/commands/infer-quilt-config");
+const discover_vpc_1 = require("../../scripts/discover-vpc");
 /**
  * Phase 2: Stack Query
  *
@@ -29,7 +30,7 @@ const infer_quilt_config_1 = require("../../bin/commands/infer-quilt-config");
  */
 async function runStackQuery(catalogDns, options = {}) {
     const { awsProfile, awsRegion } = options;
-    console.log(`Querying CloudFormation stack for catalog: ${catalogDns}...\n`);
+    console.log(`Fetching catalog configuration for: ${catalogDns}...`);
     try {
         // Use inferQuiltConfig with the confirmed catalog - this will skip quilt3 check
         const inferenceResult = await (0, infer_quilt_config_1.inferQuiltConfig)({
@@ -64,6 +65,13 @@ async function runStackQuery(catalogDns, options = {}) {
         const athenaResultsBucketPolicy = inferenceResult.athenaResultsBucketPolicy;
         const readRoleArn = inferenceResult.readRoleArn;
         const writeRoleArn = inferenceResult.writeRoleArn;
+        // Show IAM roles (these are logged by inferQuiltConfig)
+        if (readRoleArn) {
+            console.log(chalk_1.default.dim(`✓ T4BucketReadRole discovered: ${readRoleArn}`));
+        }
+        if (writeRoleArn) {
+            console.log(chalk_1.default.dim(`✓ T4BucketWriteRole: ${writeRoleArn}`));
+        }
         // Log what we found
         console.log(chalk_1.default.green("✓ Stack query succeeded\n"));
         console.log(chalk_1.default.dim(`✓ Stack ARN: ${stackArn}`));
@@ -81,19 +89,13 @@ async function runStackQuery(catalogDns, options = {}) {
         console.log(athenaResultsBucketPolicy
             ? chalk_1.default.dim(`✓ Athena Results Bucket Policy: ${athenaResultsBucketPolicy}`)
             : chalk_1.default.yellow("⚠ Athena Results Bucket Policy: NOT FOUND"));
-        // Iceberg resources are optional (recent addition to Quilt stacks)
-        if (icebergDatabase) {
-            console.log(chalk_1.default.green(`✓ Iceberg Database: ${icebergDatabase}`));
-        }
-        else {
-            console.log(chalk_1.default.dim("  Iceberg Database: Not available (optional)"));
-        }
-        if (icebergWorkgroup) {
-            console.log(chalk_1.default.green(`✓ Iceberg Workgroup: ${icebergWorkgroup}`));
-        }
-        else {
-            console.log(chalk_1.default.dim("  Iceberg Workgroup: Not available (optional)"));
-        }
+        // Iceberg resources are optional (recent addition to Quilt stacks) - keep dimmed
+        console.log(icebergDatabase
+            ? chalk_1.default.dim(`✓ Iceberg Database: ${icebergDatabase}`)
+            : chalk_1.default.dim("  Iceberg Database: Not available (optional)"));
+        console.log(icebergWorkgroup
+            ? chalk_1.default.dim(`✓ Iceberg Workgroup: ${icebergWorkgroup}`)
+            : chalk_1.default.dim("  Iceberg Workgroup: Not available (optional)"));
         // IAM role ARNs are logged by inferQuiltConfig, so no need to log again here
         if (benchlingSecretArn) {
             console.log(chalk_1.default.green(`✓ BenchlingSecret: ${benchlingSecretArn}`));
@@ -106,6 +108,69 @@ async function runStackQuery(catalogDns, options = {}) {
                 ? chalk_1.default.green("✓ Benchling Integration: Enabled")
                 : chalk_1.default.yellow("⚠ Benchling Integration: Disabled"));
         }
+        // Discover VPC from stack
+        let discoveredVpcInfo;
+        try {
+            const discoveredVpc = await (0, discover_vpc_1.discoverVpcFromStack)({
+                stackArn,
+                region,
+            });
+            if (discoveredVpc) {
+                const privateSubnets = discoveredVpc.subnets.filter((s) => !s.isPublic);
+                const publicSubnets = discoveredVpc.subnets.filter((s) => s.isPublic);
+                const azs = new Set(discoveredVpc.subnets.map((s) => s.availabilityZone));
+                // Deduplicate subnets - select one subnet per AZ for NLB compatibility
+                // AWS NLB requires exactly one subnet per availability zone
+                const privateSubnetsByAz = new Map();
+                const publicSubnetsByAz = new Map();
+                for (const subnet of privateSubnets) {
+                    if (!privateSubnetsByAz.has(subnet.availabilityZone)) {
+                        privateSubnetsByAz.set(subnet.availabilityZone, subnet);
+                    }
+                }
+                for (const subnet of publicSubnets) {
+                    if (!publicSubnetsByAz.has(subnet.availabilityZone)) {
+                        publicSubnetsByAz.set(subnet.availabilityZone, subnet);
+                    }
+                }
+                // Extract deduplicated subnet IDs and AZs
+                const deduplicatedPrivateSubnets = Array.from(privateSubnetsByAz.values());
+                const deduplicatedPublicSubnets = Array.from(publicSubnetsByAz.values());
+                const deduplicatedAzs = Array.from(privateSubnetsByAz.keys());
+                discoveredVpcInfo = {
+                    vpcId: discoveredVpc.vpcId,
+                    name: discoveredVpc.name,
+                    cidrBlock: discoveredVpc.cidrBlock,
+                    privateSubnetCount: privateSubnets.length,
+                    availabilityZoneCount: azs.size,
+                    isValid: discoveredVpc.isValid,
+                    validationErrors: discoveredVpc.validationErrors,
+                    // Use deduplicated subnets - exactly one per AZ for NLB compatibility
+                    privateSubnetIds: deduplicatedPrivateSubnets.map(s => s.subnetId),
+                    publicSubnetIds: deduplicatedPublicSubnets.map(s => s.subnetId),
+                    availabilityZones: deduplicatedAzs,
+                };
+                if (discoveredVpc.isValid) {
+                    const vpcDisplay = discoveredVpc.name
+                        ? `${discoveredVpc.name} (${discoveredVpc.vpcId})`
+                        : discoveredVpc.vpcId;
+                    console.log(chalk_1.default.dim(`✓ VPC: ${vpcDisplay} - ${privateSubnets.length} private subnets in ${azs.size} AZs`));
+                }
+                else {
+                    console.log(chalk_1.default.yellow(`⚠ VPC: ${discoveredVpc.vpcId} (does not meet requirements)`));
+                    discoveredVpc.validationErrors.forEach((err) => {
+                        console.log(chalk_1.default.dim(`  - ${err}`));
+                    });
+                }
+            }
+            else {
+                console.log(chalk_1.default.dim("  VPC: Not found in stack"));
+            }
+        }
+        catch (error) {
+            const err = error;
+            console.log(chalk_1.default.dim(`  VPC: Discovery failed (${err.message})`));
+        }
         console.log("");
         return {
             stackArn,
@@ -124,6 +189,7 @@ async function runStackQuery(catalogDns, options = {}) {
             athenaResultsBucketPolicy,
             readRoleArn,
             writeRoleArn,
+            discoveredVpc: discoveredVpcInfo,
             stackQuerySucceeded: true,
         };
     }

package/dist/lib/wizard/phase2-stack-query.js.map

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package/dist/lib/wizard/phase3-parameter-collection.d.ts.map

@@ -1 +1 @@
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+{"version":3,"file":"phase3-parameter-collection.d.ts","sourceRoot":"","sources":["../../../lib/wizard/phase3-parameter-collection.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAKH,OAAO,EAAE,wBAAwB,EAAE,yBAAyB,EAAE,MAAM,SAAS,CAAC;AAE9E;;;;;;;;;;;;GAYG;AACH,wBAAsB,sBAAsB,CACxC,KAAK,EAAE,wBAAwB,GAChC,OAAO,CAAC,yBAAyB,CAAC,CA4bpC"}

package/dist/lib/wizard/phase3-parameter-collection.js

@@ -31,9 +31,62 @@ const manifest_1 = require("../../bin/commands/manifest");
 async function runParameterCollection(input) {
     const { stackQuery, existingConfig, yes = false } = input;
     // =========================================================================
+    // VPC Configuration (FIRST - most important infrastructure decision)
+    // =========================================================================
+    console.log(chalk_1.default.cyan("VPC Configuration:"));
+    let vpcId;
+    // Use VPC discovered in Phase 2 (Stack Query)
+    const discoveredVpc = stackQuery.discoveredVpc;
+    if (discoveredVpc && discoveredVpc.isValid) {
+        // Report discovered VPC
+        const vpcDescription = discoveredVpc.name
+            ? `${discoveredVpc.name} (${discoveredVpc.vpcId})`
+            : discoveredVpc.vpcId;
+        console.log(`  VPC: ${vpcDescription} - ${discoveredVpc.privateSubnetCount} private subnets in ${discoveredVpc.availabilityZoneCount} AZs`);
+        // Warn about potential connectivity issues
+        console.log(chalk_1.default.yellow("  ⚠ Warning: This VPC may block Benchling webhook access"));
+        if (yes) {
+            // In non-interactive mode, check if there's an existing VPC preference
+            if (existingConfig?.deployment?.vpc?.vpcId) {
+                vpcId = existingConfig.deployment.vpc.vpcId;
+                console.log(chalk_1.default.dim(`  Using VPC: ${vpcId} (from existing config)`));
+            }
+            else {
+                // Default to creating new VPC in non-interactive mode (safer default)
+                vpcId = undefined;
+                console.log(chalk_1.default.dim("  Will create new standalone VPC (recommended, safer default)"));
+            }
+        }
+        else {
+            // Interactive mode - ask if they want to create standalone VPC
+            // Default to YES (create new VPC) unless existing config uses this VPC
+            const defaultCreateStandalone = existingConfig?.deployment?.vpc?.vpcId !== discoveredVpc.vpcId;
+            const { createStandaloneVpc } = await inquirer_1.default.prompt([
+                {
+                    type: "confirm",
+                    name: "createStandaloneVpc",
+                    message: "Create standalone VPC? (No = use existing VPC from stack)",
+                    default: defaultCreateStandalone,
+                },
+            ]);
+            vpcId = createStandaloneVpc ? undefined : discoveredVpc.vpcId;
+            if (vpcId) {
+                console.log(chalk_1.default.dim(`  Using existing VPC: ${vpcId}`));
+            }
+            else {
+                console.log(chalk_1.default.dim("  Will create new standalone VPC (2 AZs, private subnets, NAT Gateways)"));
+            }
+        }
+    }
+    else {
+        // No valid VPC discovered - will auto-create
+        console.log("  VPC: Will create new standalone VPC (2 AZs, private subnets, NAT Gateways)");
+        vpcId = undefined;
+    }
+    // =========================================================================
     // Benchling Configuration
     // =========================================================================
-    console.log(chalk_1.default.cyan("Benchling Configuration:"));
+    console.log("\n" + chalk_1.default.cyan("Benchling Configuration:"));
     // Tenant
     let tenant;
     if (input.benchlingTenant) {
@@ -376,6 +429,13 @@ async function runParameterCollection(input) {
         deployment: {
             region,
             account,
+            vpc: vpcId && discoveredVpc ? {
+                vpcId,
+                privateSubnetIds: discoveredVpc.privateSubnetIds,
+                publicSubnetIds: discoveredVpc.publicSubnetIds,
+                availabilityZones: discoveredVpc.availabilityZones,
+                vpcCidrBlock: discoveredVpc.cidrBlock,
+            } : undefined,
         },
         logging: {
             level: logLevel,

package/dist/lib/wizard/phase3-parameter-collection.js.map

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package/dist/lib/wizard/phase6-integrated-mode.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"phase6-integrated-mode.d.ts","sourceRoot":"","sources":["../../../lib/wizard/phase6-integrated-mode.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAMH,OAAO,EAAE,mBAAmB,EAAE,oBAAoB,EAAE,MAAM,SAAS,CAAC;AAiFpE;;;;;;;;;;;;;GAaG;AACH,wBAAsB,iBAAiB,CAAC,KAAK,EAAE,mBAAmB,GAAG,OAAO,CAAC,oBAAoB,CAAC,CA6HjG"}
+{"version":3,"file":"phase6-integrated-mode.d.ts","sourceRoot":"","sources":["../../../lib/wizard/phase6-integrated-mode.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAMH,OAAO,EAAE,mBAAmB,EAAE,oBAAoB,EAAE,MAAM,SAAS,CAAC;AAmFpE;;;;;;;;;;;;;GAaG;AACH,wBAAsB,iBAAiB,CAAC,KAAK,EAAE,mBAAmB,GAAG,OAAO,CAAC,oBAAoB,CAAC,CA6HjG"}

package/dist/lib/wizard/phase6-integrated-mode.js

@@ -48,6 +48,7 @@ exports.runIntegratedMode = runIntegratedMode;
 const chalk_1 = __importDefault(require("chalk"));
 const inquirer_1 = __importDefault(require("inquirer"));
 const sync_secrets_1 = require("../../bin/commands/sync-secrets");
+const package_json_1 = __importDefault(require("../../package.json"));
 /**
  * Builds ProfileConfig from collected parameters
  */
@@ -77,6 +78,7 @@ function buildProfileConfig(input) {
         deployment: {
             region: parameters.deployment.region,
             account: parameters.deployment.account,
+            vpc: parameters.deployment.vpc,
         },
         integratedStack: true, // CRITICAL: Mark as integrated mode
         logging: {
@@ -87,7 +89,7 @@ function buildProfileConfig(input) {
             webhookAllowList: parameters.security.webhookAllowList,
         },
         _metadata: {
-            version: "0.7.0",
+            version: package_json_1.default.version,
             createdAt: now,
             updatedAt: now,
             source: "wizard",

package/dist/lib/wizard/phase6-integrated-mode.js.map

@@ -1 +1 @@
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package/dist/lib/wizard/phase7-standalone-mode.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"phase7-standalone-mode.d.ts","sourceRoot":"","sources":["../../../lib/wizard/phase7-standalone-mode.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAMH,OAAO,EAAE,mBAAmB,EAAE,oBAAoB,EAAE,MAAM,SAAS,CAAC;AAiFpE;;;;;;;;;;;;;GAaG;AACH,wBAAsB,iBAAiB,CAAC,KAAK,EAAE,mBAAmB,GAAG,OAAO,CAAC,oBAAoB,CAAC,CAoGjG"}
+{"version":3,"file":"phase7-standalone-mode.d.ts","sourceRoot":"","sources":["../../../lib/wizard/phase7-standalone-mode.ts"],"names":[],"mappings":"AAAA;;;;;;;GAOG;AAMH,OAAO,EAAE,mBAAmB,EAAE,oBAAoB,EAAE,MAAM,SAAS,CAAC;AAmFpE;;;;;;;;;;;;;GAaG;AACH,wBAAsB,iBAAiB,CAAC,KAAK,EAAE,mBAAmB,GAAG,OAAO,CAAC,oBAAoB,CAAC,CAoGjG"}

package/dist/lib/wizard/phase7-standalone-mode.js

@@ -48,6 +48,7 @@ exports.runStandaloneMode = runStandaloneMode;
 const inquirer_1 = __importDefault(require("inquirer"));
 const chalk_1 = __importDefault(require("chalk"));
 const sync_secrets_1 = require("../../bin/commands/sync-secrets");
+const package_json_1 = __importDefault(require("../../package.json"));
 /**
  * Builds ProfileConfig from collected parameters
  */
@@ -77,6 +78,7 @@ function buildProfileConfig(input) {
         deployment: {
             region: parameters.deployment.region,
             account: parameters.deployment.account,
+            vpc: parameters.deployment.vpc,
         },
         integratedStack: false, // CRITICAL: Mark as standalone mode
         logging: {
@@ -87,7 +89,7 @@ function buildProfileConfig(input) {
             webhookAllowList: parameters.security.webhookAllowList,
         },
         _metadata: {
-            version: "0.7.0",
+            version: package_json_1.default.version,
             createdAt: now,
             updatedAt: now,
             source: "wizard",

package/dist/lib/wizard/phase7-standalone-mode.js.map

@@ -1 +1 @@
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package/dist/lib/wizard/types.d.ts

@@ -19,6 +19,31 @@ export interface CatalogDiscoveryResult {
     /** The catalog that was initially detected (if any) */
     detectedCatalog?: string;
 }
+/**
+ * Discovered VPC from stack query (subset of full VPC discovery)
+ */
+export interface DiscoveredVpcInfo {
+    /** VPC ID */
+    vpcId: string;
+    /** VPC name from tags */
+    name?: string;
+    /** CIDR block */
+    cidrBlock: string;
+    /** Number of private subnets */
+    privateSubnetCount: number;
+    /** Number of availability zones */
+    availabilityZoneCount: number;
+    /** Whether VPC meets architecture requirements */
+    isValid: boolean;
+    /** Validation error messages */
+    validationErrors: string[];
+    /** Actual private subnet IDs for CDK VPC construction */
+    privateSubnetIds: string[];
+    /** Actual public subnet IDs for CDK VPC construction */
+    publicSubnetIds: string[];
+    /** Availability zones for the subnets */
+    availabilityZones: string[];
+}
 /**
  * Phase 2: Stack Query Result
  */
@@ -57,6 +82,8 @@ export interface StackQueryResult {
     readRoleArn?: string;
     /** IAM role ARN for read-write S3 access (from T4BucketWriteRole) */
     writeRoleArn?: string;
+    /** Discovered VPC from Quilt stack (optional) */
+    discoveredVpc?: DiscoveredVpcInfo;
 }
 /**
  * Phase 3: Parameter Collection Input
@@ -95,6 +122,13 @@ export interface ParameterCollectionResult {
     deployment: {
         region: string;
         account: string;
+        vpc?: {
+            vpcId?: string;
+            privateSubnetIds?: string[];
+            publicSubnetIds?: string[];
+            availabilityZones?: string[];
+            vpcCidrBlock?: string;
+        };
     };
     logging: {
         level: "DEBUG" | "INFO" | "WARNING" | "ERROR";

package/dist/lib/wizard/types.d.ts.map

@@ -1 +1 @@
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package/dist/lib/xdg-base.d.ts

@@ -1,5 +1,5 @@
 /**
- * XDG Base Abstract Class (v0.7.0)
+ * XDG Base Abstract Class
  *
  * Abstract base class containing all shared business logic for configuration management.
  * Concrete implementations (XDGConfig, XDGTest) provide storage primitives.
@@ -234,6 +234,22 @@ export declare abstract class XDGBase implements IConfigStorage {
      * ```
      */
     getActiveDeployment(profile: string, stage: string): DeploymentRecord | null;
+    /**
+     * Clears the active deployment for a specific stage
+     *
+     * Removes the active deployment entry for the given stage, but keeps
+     * the deployment history intact.
+     *
+     * @param profile - Profile name
+     * @param stage - Stage name (e.g., "dev", "prod")
+     *
+     * @example
+     * ```typescript
+     * // Clear production deployment tracking after destroying the stack
+     * storage.clearDeployment("default", "prod");
+     * ```
+     */
+    clearDeployment(profile: string, stage: string): void;
     /**
      * Reads profile configuration with inheritance support
      *

package/dist/lib/xdg-base.d.ts.map

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package/dist/lib/xdg-base.js

@@ -1,6 +1,6 @@
 "use strict";
 /**
- * XDG Base Abstract Class (v0.7.0)
+ * XDG Base Abstract Class
  *
  * Abstract base class containing all shared business logic for configuration management.
  * Concrete implementations (XDGConfig, XDGTest) provide storage primitives.
@@ -303,6 +303,35 @@ class XDGBase {
             return null;
         }
     }
+    /**
+     * Clears the active deployment for a specific stage
+     *
+     * Removes the active deployment entry for the given stage, but keeps
+     * the deployment history intact.
+     *
+     * @param profile - Profile name
+     * @param stage - Stage name (e.g., "dev", "prod")
+     *
+     * @example
+     * ```typescript
+     * // Clear production deployment tracking after destroying the stack
+     * storage.clearDeployment("default", "prod");
+     * ```
+     */
+    clearDeployment(profile, stage) {
+        try {
+            const deployments = this.getDeployments(profile);
+            // Remove active deployment for this stage
+            if (deployments.active[stage]) {
+                delete deployments.active[stage];
+                // Write updated deployments
+                this.writeDeploymentsRaw(profile, deployments);
+            }
+        }
+        catch (error) {
+            throw new Error(`Failed to clear deployment for profile "${profile}" stage "${stage}": ${error.message}`);
+        }
+    }
     // ====================================================================
     // Profile Inheritance (Business Logic)
     // ====================================================================