npm - @quiltdata/benchling-webhook - Versions diffs - 0.8.0-20251117T215047Z → 0.8.0-20251118T034033Z - Mend

@quiltdata/benchling-webhook 0.8.0-20251117T215047Z → 0.8.0-20251118T034033Z

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Files changed (47) hide show

package/dist/bin/commands/deploy.d.ts.map +1 -1
package/dist/bin/commands/deploy.js +38 -34
package/dist/bin/commands/deploy.js.map +1 -1
package/dist/bin/commands/infer-quilt-config.d.ts +2 -0
package/dist/bin/commands/infer-quilt-config.d.ts.map +1 -1
package/dist/bin/commands/infer-quilt-config.js +24 -3
package/dist/bin/commands/infer-quilt-config.js.map +1 -1
package/dist/bin/xdg-launch.d.ts.map +1 -1
package/dist/bin/xdg-launch.js +3 -0
package/dist/bin/xdg-launch.js.map +1 -1
package/dist/lib/benchling-webhook-stack.d.ts.map +1 -1
package/dist/lib/benchling-webhook-stack.js +3 -0
package/dist/lib/benchling-webhook-stack.js.map +1 -1
package/dist/lib/configuration-saver.d.ts.map +1 -1
package/dist/lib/configuration-saver.js +3 -1
package/dist/lib/configuration-saver.js.map +1 -1
package/dist/lib/fargate-service.d.ts +2 -0
package/dist/lib/fargate-service.d.ts.map +1 -1
package/dist/lib/fargate-service.js +20 -3
package/dist/lib/fargate-service.js.map +1 -1
package/dist/lib/types/config.d.ts +36 -0
package/dist/lib/types/config.d.ts.map +1 -1
package/dist/lib/types/config.js +2 -0
package/dist/lib/types/config.js.map +1 -1
package/dist/lib/utils/stack-inference.d.ts +15 -2
package/dist/lib/utils/stack-inference.d.ts.map +1 -1
package/dist/lib/utils/stack-inference.js +31 -3
package/dist/lib/utils/stack-inference.js.map +1 -1
package/dist/lib/wizard/phase2-stack-query.d.ts.map +1 -1
package/dist/lib/wizard/phase2-stack-query.js +14 -9
package/dist/lib/wizard/phase2-stack-query.js.map +1 -1
package/dist/lib/wizard/phase6-integrated-mode.d.ts.map +1 -1
package/dist/lib/wizard/phase6-integrated-mode.js +7 -0
package/dist/lib/wizard/phase6-integrated-mode.js.map +1 -1
package/dist/lib/wizard/phase7-standalone-mode.d.ts.map +1 -1
package/dist/lib/wizard/phase7-standalone-mode.js +7 -0
package/dist/lib/wizard/phase7-standalone-mode.js.map +1 -1
package/dist/lib/wizard/types.d.ts +4 -0
package/dist/lib/wizard/types.d.ts.map +1 -1
package/dist/lib/xdg-base.d.ts.map +1 -1
package/dist/lib/xdg-base.js +7 -3
package/dist/lib/xdg-base.js.map +1 -1
package/dist/lib/xdg-config.d.ts.map +1 -1
package/dist/lib/xdg-config.js +4 -2
package/dist/lib/xdg-config.js.map +1 -1
package/dist/package.json +3 -4
package/package.json +3 -4

package/dist/bin/commands/deploy.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"deploy.d.ts","sourceRoot":"","sources":["../../../bin/commands/deploy.ts"],"names":[],"mappings":"~~AAcA~~,OAAO,EAAE,aAAa,EAAE,MAAM,wBAAwB,CAAC;~~AAoCvD~~;;;;;;;;GAQG;AACH,wBAAsB,aAAa,CAAC,OAAO,EAAE;IACzC,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,KAAK,CAAC,EAAE,KAAK,GAAG,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;CACpB,GAAG,OAAO,CAAC,IAAI,CAAC,CA8FhB;AAED;;GAEG;AACH,wBAAsB,MAAM,CACxB,QAAQ,EAAE,MAAM,EAChB,eAAe,EAAE,MAAM,EACvB,MAAM,EAAE,aAAa,EACrB,OAAO,EAAE;IACL,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,KAAK,EAAE,KAAK,GAAG,MAAM,CAAC;IACtB,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;CACpB,GACF,OAAO,CAAC,IAAI,CAAC,~~CAyVf~~"}
1	+ {"version":3,"file":"deploy.d.ts","sourceRoot":"","sources":["../../../bin/commands/deploy.ts"],"names":[],"mappings":"AAaA,OAAO,EAAE,aAAa,EAAE,MAAM,wBAAwB,CAAC;AA8CvD;;;;;;;;GAQG;AACH,wBAAsB,aAAa,CAAC,OAAO,EAAE;IACzC,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,KAAK,CAAC,EAAE,KAAK,GAAG,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;CACpB,GAAG,OAAO,CAAC,IAAI,CAAC,CA8FhB;AAED;;GAEG;AACH,wBAAsB,MAAM,CACxB,QAAQ,EAAE,MAAM,EAChB,eAAe,EAAE,MAAM,EACvB,MAAM,EAAE,aAAa,EACrB,OAAO,EAAE;IACL,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,KAAK,EAAE,KAAK,GAAG,MAAM,CAAC;IACtB,WAAW,EAAE,MAAM,CAAC;IACpB,QAAQ,EAAE,MAAM,CAAC;IACjB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;CACpB,GACF,OAAO,CAAC,IAAI,CAAC,CAuVf"}

package/dist/bin/commands/deploy.js CHANGED Viewed

@@ -51,6 +51,15 @@ const client_cloudformation_1 = require("@aws-sdk/client-cloudformation");
 const sync_secrets_1 = require("./sync-secrets");
 const fs = __importStar(require("fs"));
 const path = __importStar(require("path"));
+/**
+ * Helper function to display setup command suggestion
+ */
+function suggestSetup(profileName, message) {
+    console.log(chalk_1.default.yellow(message));
+    console.log();
+    console.log(chalk_1.default.cyan(`  npm run setup -- --profile ${profileName}`));
+    console.log();
+}
 /**
  * Get the most recent dev version tag (without 'v' prefix)
  * Returns null if no dev tags found
@@ -284,36 +293,35 @@ async function deploy(stackArn, benchlingSecret, config, options) {
             spinner.succeed(`CDK is bootstrapped (${bootstrapStatus.status})`);
         }
     }
-    // Resolve Quilt services from CloudFormation stack (v1.0.0+)
-    // This eliminates runtime CloudFormation API calls by resolving services at deployment time
-    let services;
-    spinner.start("Resolving Quilt services from CloudFormation stack...");
-    try {
-        services = await (0, service_resolver_1.resolveQuiltServices)({
-            stackArn,
-        });
-        spinner.succeed("Quilt services resolved from CloudFormation stack");
-    }
-    catch (error) {
-        spinner.fail("Failed to resolve Quilt services");
+    // Load Quilt configuration from config.quilt.*
+    spinner.start("Loading Quilt configuration...");
+    // Validate required fields
+    const missingFields = [];
+    if (!config.quilt.queueUrl)
+        missingFields.push("queueUrl");
+    if (!config.quilt.database)
+        missingFields.push("database");
+    if (!config.quilt.catalog)
+        missingFields.push("catalog");
+    if (missingFields.length > 0) {
+        spinner.fail("Invalid Quilt configuration");
         console.log();
-        if (error instanceof service_resolver_1.ServiceResolverError) {
-            console.error(chalk_1.default.red(error.format()));
-        }
-        else {
-            console.error(chalk_1.default.red(error.message));
-        }
-        console.log();
-        console.log(chalk_1.default.yellow("Troubleshooting:"));
-        console.log("  1. Verify the Quilt CloudFormation stack exists and is deployed");
-        console.log("  2. Ensure your AWS credentials have cloudformation:DescribeStacks permission");
-        console.log("  3. Check that the stack outputs include required values:");
-        console.log("     - PackagerQueueUrl (SQS queue URL)");
-        console.log("     - UserAthenaDatabaseName (Athena database)");
-        console.log("     - QuiltWebHost (catalog web host)");
+        console.error(chalk_1.default.red(`Error: Required fields missing: ${missingFields.join(", ")}`));
         console.log();
+        suggestSetup(options.profileName, "Please re-run setup:");
         process.exit(1);
     }
+    // Convert to QuiltServices format for deployment
+    const services = {
+        packagerQueueUrl: config.quilt.queueUrl,
+        athenaUserDatabase: config.quilt.database,
+        quiltWebHost: config.quilt.catalog,
+        icebergDatabase: config.quilt.icebergDatabase,
+        athenaUserWorkgroup: config.quilt.athenaUserWorkgroup,
+        athenaResultsBucket: config.quilt.athenaResultsBucket,
+        icebergWorkgroup: config.quilt.icebergWorkgroup,
+    };
+    spinner.succeed("Quilt configuration loaded");
     // Build ECR image URI for display
     // HARDCODED: Always use the quiltdata AWS account for ECR images
     const ecrAccount = "712023778557";
@@ -331,21 +339,17 @@ async function deploy(stackArn, benchlingSecret, config, options) {
     console.log(`  ${chalk_1.default.bold("Profile:")}                   ${options.profileName}`);
     console.log();
     console.log(chalk_1.default.bold("  Resolved Quilt Services:"));
+    console.log(`    ${chalk_1.default.bold("Catalog Host:")}            ${services.quiltWebHost}`);
     console.log(`    ${chalk_1.default.bold("Packager Queue:")}          ${services.packagerQueueUrl}`);
     console.log(`    ${chalk_1.default.bold("Athena Database:")}         ${services.athenaUserDatabase}`);
-    console.log(`    ${chalk_1.default.bold("Catalog Host:")}            ${services.quiltWebHost}`);
+    console.log(`    ${chalk_1.default.bold("Athena Workgroup:")}        ${services.athenaUserWorkgroup}`);
+    console.log(`    ${chalk_1.default.bold("Athena Results Bucket:")}   ${services.athenaResultsBucket}`);
     if (services.icebergDatabase) {
         console.log(`    ${chalk_1.default.bold("Iceberg Database:")}        ${services.icebergDatabase}`);
     }
     if (services.icebergWorkgroup) {
         console.log(`    ${chalk_1.default.bold("Iceberg Workgroup:")}       ${services.icebergWorkgroup}`);
     }
-    if (services.athenaUserWorkgroup) {
-        console.log(`    ${chalk_1.default.bold("Athena Workgroup:")}        ${services.athenaUserWorkgroup}`);
-    }
-    if (services.athenaResultsBucket) {
-        console.log(`    ${chalk_1.default.bold("Athena Results Bucket:")}   ${services.athenaResultsBucket}`);
-    }
     console.log();
     console.log(chalk_1.default.bold("  Stack Parameters:"));
     console.log(`    ${chalk_1.default.bold("Quilt Stack ARN:")}         ${(0, config_1.maskArn)(stackArn)} ${chalk_1.default.dim("(deployment-time resolution only)")}`);
@@ -357,7 +361,7 @@ async function deploy(stackArn, benchlingSecret, config, options) {
     console.log(`    ${chalk_1.default.bold("Image Tag:")}               ${options.imageTag}`);
     console.log(`    ${chalk_1.default.bold("Full Image URI:")}          ${ecrImageUri}`);
     console.log();
-    console.log(chalk_1.default.dim("  ℹ️  Services resolved at deployment time - no runtime CloudFormation calls"));
+    console.log(chalk_1.default.dim("  ℹ️  Configuration loaded from profile - single source of truth"));
     console.log(chalk_1.default.gray("─".repeat(80)));
     console.log();
     // Confirm (unless --yes)

package/dist/bin/commands/deploy.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/bin/commands/infer-quilt-config.d.ts CHANGED Viewed

@@ -27,6 +27,8 @@ interface InferenceResult {
     icebergDatabase?: string;
     athenaResultsBucket?: string;
     athenaResultsBucketPolicy?: string;
+    readRoleArn?: string;
+    writeRoleArn?: string;
     source: string;
 }
 /**

package/dist/bin/commands/infer-quilt-config.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"infer-quilt-config.d.ts","sourceRoot":"","sources":["../../../bin/commands/infer-quilt-config.ts"],"names":[],"mappings":";AACA;;;;;;;;;GASG;~~AAuCH~~;;GAEG;AACH,UAAU,eAAe;IACrB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,2BAA2B,CAAC,EAAE,OAAO,CAAC;IACtC,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,yBAAyB,CAAC,EAAE,MAAM,CAAC;IACnC,MAAM,EAAE,MAAM,CAAC;CAClB;~~AAiOD~~;;;;;;;;;;;GAWG;AACH,wBAAsB,gBAAgB,CAAC,OAAO,EAAE;IAC5C,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,UAAU,CAAC,EAAE,MAAM,CAAC;CACvB,GAAG,OAAO,CAAC,eAAe,CAAC,~~CAsO3B~~"}
1	+ {"version":3,"file":"infer-quilt-config.d.ts","sourceRoot":"","sources":["../../../bin/commands/infer-quilt-config.ts"],"names":[],"mappings":";AACA;;;;;;;;;GASG;AAyCH;;GAEG;AACH,UAAU,eAAe;IACrB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,kBAAkB,CAAC,EAAE,MAAM,CAAC;IAC5B,2BAA2B,CAAC,EAAE,OAAO,CAAC;IACtC,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,gBAAgB,CAAC,EAAE,MAAM,CAAC;IAC1B,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAC7B,yBAAyB,CAAC,EAAE,MAAM,CAAC;IACnC,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,YAAY,CAAC,EAAE,MAAM,CAAC;IACtB,MAAM,EAAE,MAAM,CAAC;CAClB;AAqOD;;;;;;;;;;;GAWG;AACH,wBAAsB,gBAAgB,CAAC,OAAO,EAAE;IAC5C,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,OAAO,CAAC;IACtB,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,UAAU,CAAC,EAAE,MAAM,CAAC;CACvB,GAAG,OAAO,CAAC,eAAe,CAAC,CAmP3B"}

package/dist/bin/commands/infer-quilt-config.js CHANGED Viewed

@@ -170,12 +170,12 @@ async function findQuiltStacks(region = "us-east-1", profile, targetCatalog) {
                         stackInfo.benchlingIntegrationEnabled = value === "Enabled";
                     }
                 }
-                // NEW: Query stack resources for additional data - FAIL LOUDLY on errors
+                // Query stack resources for additional data - FAIL LOUDLY on errors
                 try {
                     const resources = await (0, stack_inference_1.getStackResources)(region, stack.StackName);
                     const discovered = (0, stack_inference_1.extractQuiltResources)(resources);
                     // Destructure discovered resources and assign to stackInfo
-                    const { athenaUserWorkgroup, athenaUserPolicy, icebergWorkgroup, icebergDatabase, athenaResultsBucket, athenaResultsBucketPolicy, } = discovered;
+                    const { athenaUserWorkgroup, athenaUserPolicy, icebergWorkgroup, icebergDatabase, athenaResultsBucket, athenaResultsBucketPolicy, readRoleArn, writeRoleArn, } = discovered;
                     Object.assign(stackInfo, {
                         athenaUserWorkgroup,
                         athenaUserPolicy,
@@ -183,6 +183,8 @@ async function findQuiltStacks(region = "us-east-1", profile, targetCatalog) {
                         icebergDatabase,
                         athenaResultsBucket,
                         athenaResultsBucketPolicy,
+                        readRoleArn,
+                        writeRoleArn,
                     });
                 }
                 catch (error) {
@@ -437,7 +439,7 @@ async function inferQuiltConfig(options) {
         result.benchlingIntegrationEnabled = selectedStack.benchlingIntegrationEnabled;
         console.log(`✓ BenchlingIntegration: ${selectedStack.benchlingIntegrationEnabled ? "Enabled" : "Disabled"}`);
     }
-    // NEW: Add discovered workgroups and resources to result
+    // Add discovered workgroups and resources to result
     if (selectedStack.athenaUserWorkgroup) {
         result.athenaUserWorkgroup = selectedStack.athenaUserWorkgroup;
     }
@@ -457,6 +459,21 @@ async function inferQuiltConfig(options) {
     if (selectedStack.athenaResultsBucketPolicy) {
         result.athenaResultsBucketPolicy = selectedStack.athenaResultsBucketPolicy;
     }
+    // NEW: Add IAM role ARNs to result
+    if (selectedStack.readRoleArn) {
+        result.readRoleArn = selectedStack.readRoleArn;
+        console.log(`✓ T4BucketReadRole: ${selectedStack.readRoleArn}`);
+    }
+    else {
+        console.log(chalk_1.default.yellow("⚠ T4BucketReadRole: NOT FOUND (optional - will use task role for S3 access)"));
+    }
+    if (selectedStack.writeRoleArn) {
+        result.writeRoleArn = selectedStack.writeRoleArn;
+        console.log(`✓ T4BucketWriteRole: ${selectedStack.writeRoleArn}`);
+    }
+    else {
+        console.log(chalk_1.default.yellow("⚠ T4BucketWriteRole: NOT FOUND (optional - will use task role for S3 access)"));
+    }
     if (result.source === "quilt3-cli") {
         result.source = "quilt3-cli+cloudformation";
     }
@@ -503,6 +520,10 @@ async function main() {
         console.log(`AWS Account ID: ${result.account}`);
     if (result.queueUrl)
         console.log(`Queue URL: ${result.queueUrl}`);
+    if (result.readRoleArn)
+        console.log(`Read Role ARN: ${result.readRoleArn}`);
+    if (result.writeRoleArn)
+        console.log(`Write Role ARN: ${result.writeRoleArn}`);
 }
 // Run main if executed directly
 if (require.main === module) {

package/dist/bin/commands/infer-quilt-config.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/bin/xdg-launch.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/bin/xdg-launch.js CHANGED Viewed

@@ -164,6 +164,9 @@ function buildEnvVars(config, mode, options) {
         ICEBERG_DATABASE: config.quilt.icebergDatabase || "",
         ICEBERG_WORKGROUP: config.quilt.icebergWorkgroup || "",
         PACKAGER_SQS_URL: config.quilt.queueUrl,
+        // IAM Role ARNs for cross-account S3 access (optional)
+        QUILT_READ_ROLE_ARN: config.quilt.readRoleArn || "",
+        QUILT_WRITE_ROLE_ARN: config.quilt.writeRoleArn || "",
         // AWS Configuration
         AWS_REGION: config.quilt.region || config.deployment.region,
         AWS_DEFAULT_REGION: config.quilt.region || config.deployment.region,

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package/dist/lib/benchling-webhook-stack.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
1	- {"version":3,"file":"benchling-webhook-stack.d.ts","sourceRoot":"","sources":["../../lib/benchling-webhook-stack.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,GAAG,MAAM,aAAa,CAAC;AAInC,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAGvC,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAG/C;;;;;GAKG;AACH,MAAM,WAAW,0BAA2B,SAAQ,GAAG,CAAC,UAAU;IAC9D;;;OAGG;IACH,QAAQ,CAAC,MAAM,EAAE,aAAa,CAAC;CAClC;AAED,qBAAa,qBAAsB,SAAQ,GAAG,CAAC,KAAK;IAChD,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAa;IACpC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAiB;IAChD,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAgB;IACpC,SAAgB,eAAe,EAAE,MAAM,CAAC;gBAGpC,KAAK,EAAE,SAAS,EAChB,EAAE,EAAE,MAAM,EACV,KAAK,EAAE,0BAA0B;~~CAsNxC~~"}
1	+ {"version":3,"file":"benchling-webhook-stack.d.ts","sourceRoot":"","sources":["../../lib/benchling-webhook-stack.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,GAAG,MAAM,aAAa,CAAC;AAInC,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAGvC,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAG/C;;;;;GAKG;AACH,MAAM,WAAW,0BAA2B,SAAQ,GAAG,CAAC,UAAU;IAC9D;;;OAGG;IACH,QAAQ,CAAC,MAAM,EAAE,aAAa,CAAC;CAClC;AAED,qBAAa,qBAAsB,SAAQ,GAAG,CAAC,KAAK;IAChD,OAAO,CAAC,QAAQ,CAAC,MAAM,CAAa;IACpC,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAiB;IAChD,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAgB;IACpC,SAAgB,eAAe,EAAE,MAAM,CAAC;gBAGpC,KAAK,EAAE,SAAS,EAChB,EAAE,EAAE,MAAM,EACV,KAAK,EAAE,0BAA0B;CAyNxC"}

package/dist/lib/benchling-webhook-stack.js CHANGED Viewed

@@ -176,6 +176,9 @@ class BenchlingWebhookStack extends cdk.Stack {
             icebergWorkgroup: icebergWorkgroupValue,
             athenaUserWorkgroup: athenaUserWorkgroupValue,
             athenaResultsBucket: athenaResultsBucketValue,
+            // NEW: Optional IAM role ARNs for cross-account S3 access
+            readRoleArn: config.quilt.readRoleArn,
+            writeRoleArn: config.quilt.writeRoleArn,
             // Legacy parameters
             benchlingSecret: benchlingSecretValue,
             packageBucket: packageBucketValue,

package/dist/lib/benchling-webhook-stack.js.map CHANGED Viewed

	@@ -1 +1 @@
1	- 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package/dist/lib/configuration-saver.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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1	+ {"version":3,"file":"configuration-saver.d.ts","sourceRoot":"","sources":["../../lib/configuration-saver.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,SAAS,EAAE,MAAM,cAAc,CAAC;AACzC,OAAO,EAAE,aAAa,EAAE,MAAM,gBAAgB,CAAC;AAG/C;;GAEG;AACH,MAAM,WAAW,cAAc;IAC3B,OAAO,EAAE,MAAM,CAAC;IAChB,MAAM,EAAE,MAAM,CAAC;IACf,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,UAAU,CAAC,EAAE,MAAM,CAAC;CACvB;AAED;;GAEG;AACH,MAAM,WAAW,WAAW;IACxB,SAAS,CAAC,EAAE,SAAS,CAAC;IACtB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,KAAK,CAAC,EAAE,OAAO,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;CACpB;AAED;;GAEG;AACH,qBAAa,kBAAkB;IAC3B;;OAEG;IACH,OAAO,CAAC,MAAM,CAAC,gBAAgB,CAA0B;IAEzD;;OAEG;IACH,OAAO,CAAC,MAAM,CAAC,mBAAmB;IAOlC;;;;;;OAMG;WACiB,IAAI,CACpB,MAAM,EAAE,OAAO,CAAC,aAAa,CAAC,EAC9B,OAAO,GAAE,WAAgB,GAC1B,OAAO,CAAC,aAAa,CAAC;IAwCzB;;;;;OAKG;WACW,WAAW,CAAC,OAAO,GAAE,OAAO,CAAC,cAAc,CAAM,GAAG,cAAc;IAShF;;;;OAIG;IACH,OAAO,CAAC,MAAM,CAAC,UAAU;CAK5B"}

package/dist/lib/configuration-saver.js CHANGED Viewed

@@ -35,8 +35,10 @@ class ConfigurationSaver {
                 const existingConfig = xdgConfig.readProfile(profile);
                 finalConfig = (0, lodash_merge_1.default)({}, existingConfig, config);
             }
-            catch {
+            catch (error) {
                 // If no existing config, just use the new config
+                console.warn(`Warning: Could not read existing configuration for merge: ${error.message}`);
+                console.warn("Using new configuration only (existing config not merged).\n");
                 finalConfig = { ...config };
             }
         }

package/dist/lib/configuration-saver.js.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/lib/fargate-service.d.ts CHANGED Viewed

@@ -30,6 +30,8 @@ export interface FargateServiceProps {
     readonly icebergWorkgroup?: string;
     readonly athenaUserWorkgroup?: string;
     readonly athenaResultsBucket?: string;
+    readonly readRoleArn?: string;
+    readonly writeRoleArn?: string;
     readonly benchlingSecret: string;
     readonly packageBucket: string;
     readonly quiltDatabase: string;

package/dist/lib/fargate-service.d.ts.map CHANGED Viewed

	@@ -1 +1 @@
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package/dist/lib/fargate-service.js CHANGED Viewed

@@ -143,6 +143,19 @@ class FargateService extends constructs_1.Construct {
                 `${packageBucketArn}/*`,
             ],
         }));
+        // Grant permission to assume Quilt stack IAM roles for cross-account S3 access
+        // These roles are discovered from the Quilt stack resources during setup
+        if (props.readRoleArn || props.writeRoleArn) {
+            taskRole.addToPolicy(new iam.PolicyStatement({
+                actions: ["sts:AssumeRole"],
+                resources: [
+                    // Use wildcard pattern to match any account/stack name
+                    // This supports cross-account deployments and different stack names
+                    "arn:aws:iam::*:role/*-T4BucketReadRole-*",
+                    "arn:aws:iam::*:role/*-T4BucketWriteRole-*",
+                ],
+            }));
+        }
         // Grant wildcard SQS access (queue ARN will be resolved at runtime)
         taskRole.addToPolicy(new iam.PolicyStatement({
             actions: [
@@ -240,10 +253,14 @@ class FargateService extends constructs_1.Construct {
             QUILT_WEB_HOST: props.quiltWebHost,
             ATHENA_USER_DATABASE: props.athenaUserDatabase,
             ATHENA_USER_WORKGROUP: props.athenaUserWorkgroup || "primary",
-            ATHENA_RESULTS_BUCKET: props.athenaResultsBucket || "",
-            ICEBERG_DATABASE: props.icebergDatabase || "",
-            ICEBERG_WORKGROUP: props.icebergWorkgroup || "",
+            // Only set optional variables if they have values (don't pass empty strings)
+            ...(props.athenaResultsBucket ? { ATHENA_RESULTS_BUCKET: props.athenaResultsBucket } : {}),
+            ...(props.icebergDatabase ? { ICEBERG_DATABASE: props.icebergDatabase } : {}),
+            ...(props.icebergWorkgroup ? { ICEBERG_WORKGROUP: props.icebergWorkgroup } : {}),
             PACKAGER_SQS_URL: props.packagerQueueUrl,
+            // IAM Role ARNs for cross-account S3 access (optional)
+            ...(props.readRoleArn ? { QUILT_READ_ROLE_ARN: props.readRoleArn } : {}),
+            ...(props.writeRoleArn ? { QUILT_WRITE_ROLE_ARN: props.writeRoleArn } : {}),
             // Benchling Configuration (credentials from Secrets Manager, NOT environment)
             BenchlingSecret: this.extractSecretName(props.benchlingSecret),
             // Security Configuration (verification can be disabled for dev/test)