@quiltdata/benchling-webhook 0.7.7 → 0.7.8-20251115T063729Z

package/dist/bin/commands/get-env.js

@@ -1,210 +0,0 @@
-#!/usr/bin/env node
-"use strict";
-/**
- * Get environment configuration from a Quilt catalog's config.json
- *
- * This script fetches config.json from a Quilt catalog URL and attempts to:
- * 1. Parse the configuration
- * 2. Query AWS CloudFormation to find the stack using resource identifiers
- * 3. Extract stack outputs and parameters
- * 4. Generate environment variables for .env
- *
- * Usage:
- *   node bin/get-env.ts https://quilt-catalog.yourcompany.com
- *   node bin/get-env.ts https://quilt-catalog.yourcompany.com --write
- */
-var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    var desc = Object.getOwnPropertyDescriptor(m, k);
-    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
-      desc = { enumerable: true, get: function() { return m[k]; } };
-    }
-    Object.defineProperty(o, k2, desc);
-}) : (function(o, m, k, k2) {
-    if (k2 === undefined) k2 = k;
-    o[k2] = m[k];
-}));
-var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
-    Object.defineProperty(o, "default", { enumerable: true, value: v });
-}) : function(o, v) {
-    o["default"] = v;
-});
-var __importStar = (this && this.__importStar) || (function () {
-    var ownKeys = function(o) {
-        ownKeys = Object.getOwnPropertyNames || function (o) {
-            var ar = [];
-            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
-            return ar;
-        };
-        return ownKeys(o);
-    };
-    return function (mod) {
-        if (mod && mod.__esModule) return mod;
-        var result = {};
-        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
-        __setModuleDefault(result, mod);
-        return result;
-    };
-})();
-var __exportStar = (this && this.__exportStar) || function(m, exports) {
-    for (var p in m) if (p !== "default" && !Object.prototype.hasOwnProperty.call(exports, p)) __createBinding(exports, m, p);
-};
-Object.defineProperty(exports, "__esModule", { value: true });
-const fs = __importStar(require("fs"));
-const path = __importStar(require("path"));
-// Import utility functions from lib/utils
-const stack_inference_1 = require("../../lib/utils/stack-inference");
-// Parse command line arguments (only when run directly)
-let args;
-let catalogUrl;
-let outputFile;
-let writeFile;
-if (require.main === module) {
-    args = process.argv.slice(2);
-    catalogUrl = args.find((arg) => !arg.startsWith("--"));
-    outputFile = args.find((arg) => arg.startsWith("--output="))?.split("=")[1];
-    writeFile = args.includes("--write");
-    if (!catalogUrl || args.includes("--help") || args.includes("-h")) {
-        printHelp();
-        process.exit(catalogUrl ? 0 : 1);
-    }
-}
-// CLI-specific functions moved to lib/utils/stack-inference.ts
-// Re-export for backward compatibility if needed
-/**
- * Format environment variables for output
- */
-function formatEnvVars(vars) {
-    const lines = [];
-    lines.push("# ==============================================================================");
-    lines.push("# INFERRED CONFIGURATION");
-    lines.push("# ==============================================================================");
-    lines.push("# Generated by: bin/get-env.ts");
-    lines.push("# Date: " + new Date().toISOString());
-    lines.push("#");
-    lines.push("# ⚠️  IMPORTANT: Review and verify all values before using!");
-    lines.push("#    Some values may need manual verification or completion.");
-    lines.push("# ==============================================================================");
-    lines.push("");
-    for (const [key, value] of Object.entries(vars)) {
-        if (key.startsWith("#")) {
-            lines.push(`${key}: ${value}`);
-        }
-        else {
-            lines.push(`${key}=${value}`);
-        }
-    }
-    lines.push("");
-    lines.push("# ==============================================================================");
-    lines.push("# REQUIRED VALUES NOT INFERRED - Must be filled manually");
-    lines.push("# ==============================================================================");
-    lines.push("PREFIX=benchling-webhook");
-    lines.push("BENCHLING_TENANT=your-tenant");
-    lines.push("BENCHLING_CLIENT_ID=your-client-id");
-    lines.push("BENCHLING_CLIENT_SECRET=your-client-secret");
-    lines.push("BENCHLING_APP=benchling-webhook");
-    lines.push("BENCHLING_API_KEY=your-api-key");
-    lines.push("BENCHLING_APP_DEFINITION_ID=appdef_your_id_here");
-    lines.push("ENABLE_WEBHOOK_VERIFICATION=true");
-    lines.push("BENCHLING_TEST_ENTRY=etr_123456789");
-    lines.push("");
-    return lines.join("\n");
-}
-/**
- * Print help
- */
-function printHelp() {
-    console.log("Usage: node bin/get-env.ts <catalog-url> [options]");
-    console.log("");
-    console.log("Arguments:");
-    console.log("  catalog-url    URL of Quilt catalog (e.g., https://quilt-catalog.yourcompany.com)");
-    console.log("");
-    console.log("Options:");
-    console.log("  --output=FILE  Write output to FILE instead of stdout");
-    console.log("  --write        Write to env.inferred by default (without dot - user-visible)");
-    console.log("  --help, -h     Show this help message");
-    console.log("");
-    console.log("Examples:");
-    console.log("  node bin/get-env.ts https://nightly.quilttest.com");
-    console.log("  node bin/get-env.ts https://nightly.quilttest.com --write");
-    console.log("  node bin/get-env.ts https://nightly.quilttest.com --output=env.staging");
-    console.log("");
-    console.log("Description:");
-    console.log("  This script fetches config.json from a Quilt catalog and infers");
-    console.log("  environment variables needed for benchling-webhook deployment by:");
-    console.log("  1. Parsing the catalog configuration");
-    console.log("  2. Querying AWS CloudFormation to find the associated stack");
-    console.log("  3. Extracting stack outputs and parameters");
-    console.log("  4. Generating environment variable assignments");
-    console.log("");
-    console.log("Requirements:");
-    console.log("  - AWS CLI installed and configured");
-    console.log("  - AWS credentials with CloudFormation read permissions");
-    console.log("  - Network access to the catalog URL");
-}
-/**
- * Main execution
- */
-async function main() {
-    if (!catalogUrl) {
-        throw new Error("Catalog URL is required");
-    }
-    try {
-        const result = await (0, stack_inference_1.inferStackConfig)(catalogUrl);
-        // Format output
-        const output = formatEnvVars(result.inferredVars);
-        // Print summary
-        console.log("=".repeat(80));
-        console.log("INFERRED CONFIGURATION");
-        console.log("=".repeat(80));
-        console.log("");
-        console.log(output);
-        console.log("");
-        // Write to file if requested
-        const targetFile = outputFile || (writeFile ? "env.inferred" : null);
-        if (targetFile) {
-            const fullPath = path.resolve(targetFile);
-            // Check if .env already exists and warn before proceeding
-            const envPath = path.resolve(".env");
-            if (fs.existsSync(envPath)) {
-                console.log("⚠️  NOTICE: A .env file already exists!");
-                console.log(`   Writing to ${targetFile} instead to avoid overwriting your configuration.`);
-                console.log("");
-            }
-            fs.writeFileSync(fullPath, output);
-            console.log("=".repeat(80));
-            console.log(`✓ Configuration written to: ${fullPath}`);
-            console.log("=".repeat(80));
-            console.log("");
-            console.log("Next steps:");
-            console.log("  1. Review the generated file and verify all values");
-            console.log("  2. Fill in the REQUIRED VALUES section with your Benchling credentials");
-            if (fs.existsSync(envPath)) {
-                console.log("  3. Carefully merge with your existing .env file (DO NOT overwrite!)");
-                console.log("     Compare: diff .env env.inferred");
-            }
-            else {
-                console.log("  3. Copy to .env when ready: cp env.inferred .env");
-            }
-            console.log("");
-        }
-        else {
-            console.log("=".repeat(80));
-            console.log("To save this configuration, run:");
-            console.log(`  node bin/get-env.ts ${catalogUrl} --write`);
-            console.log("=".repeat(80));
-            console.log("");
-        }
-    }
-    catch (error) {
-        const err = error;
-        console.error("Error:", err.message);
-        process.exit(1);
-    }
-}
-if (require.main === module) {
-    main();
-}
-// For backward compatibility, re-export from the new location
-__exportStar(require("../../lib/utils/stack-inference"), exports);
-//# sourceMappingURL=get-env.js.map

package/dist/bin/commands/get-env.js.map

@@ -1 +0,0 @@
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package/env.template

@@ -1,79 +0,0 @@
-#
-# ALWAYS REQUIRED PARAMETERS
-#
-
-# --- Benchling OAuth Configuration ---
-# Tenant: Use XXX if you login at XXX.benchling.com
-BENCHLING_TENANT=your-tenant
-
-# OAuth credentials from your Benchling app
-BENCHLING_CLIENT_ID=your-client-id
-BENCHLING_CLIENT_SECRET=your-client-secret
-
-# App definition ID from Benchling app manifest
-BENCHLING_APP_DEFINITION_ID=appdef_your_id_here
-
-# S3 bucket for storing Benchling exports (YOUR data bucket)
-BENCHLING_PKG_BUCKET=your-data-bucket # (without s3:// prefix)
-
-#
-# POSSIBLY REQUIRED PARAMETERS
-#
-
-QUILT_CATALOG=quilt-stack.your-company.com
-# Required UNLESS available from 'quilt3 config'
-
-BENCHLING_TEST_ENTRY=etr_123456789
-# Actual entry ID from your tenant, needed to run integration tests
-
-#
-# Optional PARAMETERS
-#
-
-# --- Package Configuration ---
-# Prefix for Quilt package names (e.g., "benchling/my-experiment")
-BENCHLING_PKG_PREFIX=benchling
-
-# Metadata key to link Benchling entries to packages
-BENCHLING_PKG_KEY=experiment_id
-
-
-# --- Application Configuration (Required) ---
-# Logging level: DEBUG, INFO, WARNING, ERROR, CRITICAL
-BENCHLING_LOG_LEVEL=INFO
-
-# Enable/disable webhook signature verification (true/false)
-BENCHLING_ENABLE_WEBHOOK_VERIFICATION=true
-
-# Comma-separated list of allowed source IPs (leave empty to allow all)
-# Example: 34.216.192.90,34.217.183.162
-BENCHLING_WEBHOOK_ALLOW_LIST=
-
-# ==============================================================================
-# NOTES
-# ==============================================================================
-#
-# Quick Start:
-#   1. Copy this file to .env: cp env.template .env
-#   2. Fill in BENCHLING_* variables (section 2)
-#   3. Create secret: npm run config
-#   4. Fill in QuiltStackARN (section 1)
-#   5. Deploy: npm run deploy
-#
-# Configuration at Runtime:
-#   The deployed stack resolves ALL configuration from just 2 sources:
-#   - QuiltStackARN → gets Quilt catalog, database, SQS queue from CloudFormation
-#   - BenchlingSecret → gets all Benchling credentials and app config from Secrets Manager
-#
-#   No other environment variables are needed for production deployment.
-#
-# Local Development:
-#   For testing locally without AWS:
-#   - make -C docker run-local   (starts Flask with mocked AWS)
-#   - make -C docker test-local  (runs tests against local server)
-#
-# For More Information:
-#   - See docs/PARAMETERS.md for parameter reference
-#   - See README.md for complete setup guide
-#   - Run: npm run cli -- --help
-#