@quiltdata/benchling-webhook 0.7.2-20251106T003353Z → 0.7.2

package/README.md

@@ -4,18 +4,33 @@ Connects Benchling lab notebook entries to Quilt data packages via webhooks.
 
 ## BREAKING CHANGE: v0.7.0
 
-Version 0.7.0 introduces a completely new configuration architecture. If you are upgrading from v0.6.x, **you must reconfigure your deployment**. See [Migration Guide](#migration-from-v06x) below.
+Version 0.7.0 introduces a completely new configuration architecture using the industry-standing XDG_CONFIG_HOME.
+If you are upgrading from an earlier version, **you must reconfigure your deployment**.
+Just run the wizard and copy the necessary values from your `.env` file, if any.
 
 ## Prerequisites
 
 - Node.js 18+ with `npx` ([download](https://nodejs.org))
 - [AWS credentials](https://docs.aws.amazon.com/cli/v1/userguide/cli-configure-files.html) configured
 - Existing [Quilt deployment](https://www.quilt.bio/install)
-- Benchling tenant with OAuth app configured
+- Benchling tenant (need Admin permissions to install a Benchling app)
 
 ## Quick Start
 
-Run the guided setup wizard:
+### 1. Install the Benchling app
+
+First create a manifest:
+
+```bash
+npx @quiltdata/benchling-webhook@latest manifest
+```
+
+Then follow the instructions to [create](https://docs.benchling.com/docs/getting-started-benchling-apps#creating-an-app-from-a-manifest) and [install](https://docs.benchling.com/docs/getting-started-benchling-apps#installing-your-app) the app.
+
+This will give you an App Definition ID and Client ID,
+which --- along with the Client Secret must generate -- you will need later.
+
+### 2. Run the setup wizard
 
 ```bash
 npx @quiltdata/benchling-webhook@latest
@@ -28,181 +43,40 @@ The wizard will:
 3. Sync secrets to AWS Secrets Manager
 4. Deploy to AWS
 
-After deployment, install the webhook URL in your [Benchling app settings](https://docs.benchling.com/docs/getting-started-benchling-apps#installing-your-app).
+It will list the outputs, including the webhook URL.
 
-## Usage
-
-In Benchling: Create entry → Insert Canvas → "Quilt Integration" → Create/Update package
-
-## Configuration Structure (v0.7.0+)
-
-Profiles are stored in `~/.config/benchling-webhook/{profile}/`:
-
-```
-~/.config/benchling-webhook/
-├── default/
-│   ├── config.json          # All configuration settings
-│   └── deployments.json     # Deployment history and tracking
-├── dev/                     # Optional: development profile
-│   ├── config.json
-│   └── deployments.json
-└── prod/                    # Optional: separate production profile
-    ├── config.json
-    └── deployments.json
-```
+### 3. Configure Webhook URL
 
-### Profile-Based Configuration
+After deployment, add the webhook URL to your [Benchling app settings](https://docs.benchling.com/docs/getting-started-benchling-apps#installing-your-app).
 
-**Profile**: A named set of configuration values (credentials, settings, etc.)
+### 4. Usage
 
-**Stage**: An API Gateway deployment target (`dev`, `prod`, `staging`, etc.)
+In Benchling:
 
-Profiles and stages are independent - you can deploy any profile to any stage.
+1. Create entry →
+2. Insert Canvas →
+3. Select "Quilt Package" →
+4. Click "Create"
 
-## Multi-Environment Deployments
+This will generate an App Canvas with a dedicated Quilt package for this notebook, as well as additional links and buttons.
 
-### For End Users (Single Environment)
+## Other Commands
 
-Most users only need production:
+If necessary, you can manually deploy (without redoing setup) via:
 
 ```bash
-npx @quiltdata/benchling-webhook@latest        # Setup production profile
-npx @quiltdata/benchling-webhook@latest deploy # Deploy to production
-npx @quiltdata/benchling-webhook@latest test   # Test production
-```
-
-### For Maintainers (Dev + Production)
-
-Create side-by-side dev and production environments:
-
-```bash
-# Initial setup (one-time)
-npx @quiltdata/benchling-webhook@latest setup                       # Setup default profile
-npx @quiltdata/benchling-webhook@latest setup-profile dev --inherit # Setup dev profile
-
-# Edit dev profile to override:
-# - benchling.appDefinitionId (different Benchling app for dev)
-# - deployment.imageTag ("latest" for dev, semantic version for prod)
-
-# Deploy both environments
-npx @quiltdata/benchling-webhook@latest deploy --profile dev --stage dev     # Deploy dev
-npx @quiltdata/benchling-webhook@latest deploy --profile default --stage prod # Deploy prod
-
-# Test both environments
-npx @quiltdata/benchling-webhook@latest test --profile dev    # Test dev
-npx @quiltdata/benchling-webhook@latest test --profile default # Test prod
-```
-
-### Architecture
-
-```
-Single AWS Stack: BenchlingWebhookStack
-├── API Gateway (shared)
-│   ├── Stage: dev  → https://xxx.amazonaws.com/dev/event
-│   └── Stage: prod → https://xxx.amazonaws.com/prod/event
-├── ALB (shared)
-│   ├── Target Group: dev-targets  → ECS Service: benchling-webhook-dev
-│   └── Target Group: prod-targets → ECS Service: benchling-webhook-prod
-├── ECS Cluster (shared)
-│   ├── Service: benchling-webhook-dev  (imageTag: latest)
-│   └── Service: benchling-webhook-prod (imageTag: v0.7.0)
-└── VPC, Secrets Manager, CloudWatch (shared)
+npx @quiltdata/benchling-webhook@latest deploy
 ```
 
-## Available Commands
+For more information, use:
 
 ```bash
-npx @quiltdata/benchling-webhook@latest --help              # Show all commands
-npx @quiltdata/benchling-webhook@latest setup               # Initial setup (creates default profile)
-npx @quiltdata/benchling-webhook@latest setup-profile dev   # Create dev profile
-npx @quiltdata/benchling-webhook@latest deploy              # Deploy default profile to prod stage
-npx @quiltdata/benchling-webhook@latest deploy --profile dev --stage dev # Deploy dev profile to dev stage
-npx @quiltdata/benchling-webhook@latest test                # Test deployed integration
-npx @quiltdata/benchling-webhook@latest manifest            # Generate Benchling app manifest
+npx @quiltdata/benchling-webhook@latest --help    # Show all commands
 ```
 
-## Migration from v0.6.x
-
-**IMPORTANT: Version 0.7.0 is a BREAKING CHANGE release.**
-
-The configuration structure has completely changed. There is **NO automatic migration**. You must manually reconfigure your deployment.
-
-### Step-by-Step Upgrade Guide
-
-1. **Before upgrading, save your current configuration:**
-
-   ```bash
-   # Save your current settings for reference
-   cat ~/.config/benchling-webhook/default.json > ~/benchling-config-backup.json
-   cat ~/.config/benchling-webhook/deploy.json >> ~/benchling-config-backup.json
-   ```
-
-2. **Install v0.7.0:**
-
-   ```bash
-   npm install -g @quiltdata/benchling-webhook@0.7.0
-   # or use npx
-   npx @quiltdata/benchling-webhook@0.7.0
-   ```
-
-3. **Run setup wizard to create new configuration:**
-
-   ```bash
-   npx @quiltdata/benchling-webhook@latest setup
-   ```
-
-   The wizard will prompt you to re-enter your configuration. Reference your backup file for settings.
-
-4. **For multi-environment setups, create additional profiles:**
-
-   ```bash
-   npx @quiltdata/benchling-webhook@latest setup-profile dev --inherit
-   ```
-
-5. **Test your deployment:**
-
-   ```bash
-   npx @quiltdata/benchling-webhook@latest deploy --profile default --stage prod
-   npx @quiltdata/benchling-webhook@latest test --profile default
-   ```
-
-6. **Optional: Clean up old configuration files:**
-
-   Old configuration files are not used by v0.7.0 but remain for reference:
-   - `~/.config/benchling-webhook/default.json` (old user config)
-   - `~/.config/benchling-webhook/deploy.json` (old deployment tracking)
-   - `~/.config/benchling-webhook/profiles/` (old profiles directory)
-
-   You can safely delete these after verifying your new deployment works.
-
-### What Changed in v0.7.0
-
-| v0.6.x | v0.7.0 |
-|--------|--------|
-| `~/.config/benchling-webhook/default.json` | `~/.config/benchling-webhook/default/config.json` |
-| `~/.config/benchling-webhook/profiles/dev/default.json` | `~/.config/benchling-webhook/dev/config.json` |
-| `~/.config/benchling-webhook/deploy.json` (shared) | `~/.config/benchling-webhook/{profile}/deployments.json` (per-profile) |
-
-For detailed migration information, see [MIGRATION.md](./MIGRATION.md).
-
-## Cost Information
-
-Running multiple environments increases infrastructure costs:
-
-| Configuration | Monthly Cost | Notes |
-|---------------|--------------|-------|
-| **Single environment** | $70-100 | Production only |
-| **Dual environment** | $85-145 | +15-45% for dev environment |
-
-**Cost breakdown:**
-- ALB: ~$23 (shared between environments)
-- NAT Gateway: ~$32 (shared between environments)
-- ECS Fargate: ~$15-45 per environment (scales with usage)
-
 ## Resources
 
 - [Changelog](./CHANGELOG.md) - Version history
-- [Migration Guide](./MIGRATION.md) - Upgrading from v0.6.x to v0.7.0
 - [Report Issues](https://github.com/quiltdata/benchling-webhook/issues)
 
 ## License

package/dist/bin/benchling-webhook.d.ts.map

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package/dist/bin/benchling-webhook.js

@@ -84,9 +84,8 @@ function legacyConfigToProfileConfig(config) {
         quilt: {
             stackArn: config.quiltStackArn || "",
             catalog: config.quiltCatalog,
-            bucket: config.quiltUserBucket,
             database: config.quiltDatabase,
-            queueArn: config.queueArn,
+            queueUrl: config.queueUrl,
             region: config.cdkRegion,
         },
         benchling: {
@@ -156,9 +155,8 @@ if (require.main === module) {
         quilt: {
             stackArn: process.env.QUILT_STACK_ARN || "",
             catalog: process.env.QUILT_CATALOG || "",
-            bucket: process.env.QUILT_USER_BUCKET || "",
             database: process.env.QUILT_DATABASE || "",
-            queueArn: process.env.QUEUE_ARN || "",
+            queueUrl: process.env.QUEUE_URL || "",
             region: process.env.CDK_DEFAULT_REGION || "us-east-1",
         },
         benchling: {

package/dist/bin/benchling-webhook.js.map

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package/dist/bin/commands/config-profiles.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"config-profiles.d.ts","sourceRoot":"","sources":["../../../bin/commands/config-profiles.ts"],"names":[],"mappings":";AACA;;;;;;;;;;;;;;;;;;GAkBG;AAGH,OAAO,EAAE,WAAW,EAAiB,MAAM,wBAAwB,CAAC;AAGpE;;;;GAIG;AACH,cAAM,cAAc;IAChB,OAAO,CAAC,SAAS,CAAY;;IAM7B;;OAEG;IACI,YAAY,IAAI,IAAI;IAwC3B;;;;OAIG;IACI,aAAa,CAAC,WAAW,EAAE,WAAW,GAAG,IAAI;IAiDpD;;;;OAIG;IACI,WAAW,CAAC,WAAW,EAAE,WAAW,GAAG,IAAI;IA2ClD;;;;OAIG;IACI,eAAe,CAAC,WAAW,EAAE,WAAW,GAAG,IAAI;IAsCtD;;;;OAIG;IACH,OAAO,CAAC,YAAY;CAwBvB;AA6DD,OAAO,EAAE,cAAc,EAAE,CAAC"}
+{"version":3,"file":"config-profiles.d.ts","sourceRoot":"","sources":["../../../bin/commands/config-profiles.ts"],"names":[],"mappings":";AACA;;;;;;;;;;;;;;;;;;GAkBG;AAGH,OAAO,EAAE,WAAW,EAAiB,MAAM,wBAAwB,CAAC;AAGpE;;;;GAIG;AACH,cAAM,cAAc;IAChB,OAAO,CAAC,SAAS,CAAY;;IAM7B;;OAEG;IACI,YAAY,IAAI,IAAI;IAwC3B;;;;OAIG;IACI,aAAa,CAAC,WAAW,EAAE,WAAW,GAAG,IAAI;IAgDpD;;;;OAIG;IACI,WAAW,CAAC,WAAW,EAAE,WAAW,GAAG,IAAI;IA2ClD;;;;OAIG;IACI,eAAe,CAAC,WAAW,EAAE,WAAW,GAAG,IAAI;IAsCtD;;;;OAIG;IACH,OAAO,CAAC,YAAY;CAwBvB;AA6DD,OAAO,EAAE,cAAc,EAAE,CAAC"}

package/dist/bin/commands/config-profiles.js

@@ -89,9 +89,8 @@ class ProfileManager {
             quilt: {
                 stackArn: "arn:aws:cloudformation:us-east-1:123456789012:stack/placeholder/placeholder",
                 catalog: "https://placeholder.quilt.com",
-                bucket: "placeholder-bucket",
                 database: "placeholder_db",
-                queueArn: "arn:aws:sqs:us-east-1:123456789012:placeholder",
+                queueUrl: "https://sqs.us-east-1.amazonaws.com/123456789012/placeholder",
                 region: "us-east-1",
             },
             benchling: {

package/dist/bin/commands/config-profiles.js.map

@@ -1 +1 @@
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+{"version":3,"file":"config-profiles.js","sourceRoot":"","sources":["../../../bin/commands/config-profiles.ts"],"names":[],"mappings":";;AACA;;;;;;;;;;;;;;;;;;GAkBG;;;AAEH,qDAAiD;AAEjD,yCAAoC;AAEpC;;;;GAIG;AACH,MAAM,cAAc;IAGhB;QACI,IAAI,CAAC,SAAS,GAAG,IAAI,sBAAS,EAAE,CAAC;IACrC,CAAC;IAED;;OAEG;IACI,YAAY;QACf,OAAO,CAAC,GAAG,CAAC,qCAAqC,CAAC,CAAC;QAEnD,MAAM,QAAQ,GAAG,IAAI,CAAC,SAAS,CAAC,YAAY,EAAE,CAAC;QAE/C,IAAI,QAAQ,CAAC,MAAM,KAAK,CAAC,EAAE,CAAC;YACxB,OAAO,CAAC,GAAG,CAAC,sBAAsB,CAAC,CAAC;YACpC,OAAO,CAAC,GAAG,CAAC,kEAAkE,CAAC,CAAC;YAChF,OAAO;QACX,CAAC;QAED,QAAQ,CAAC,OAAO,CAAC,CAAC,WAAW,EAAE,EAAE;YAC7B,MAAM,MAAM,GAAG,IAAI,CAAC,SAAS,CAAC,aAAa,CAAC,WAAW,CAAC,CAAC;YACzD,MAAM,MAAM,GAAG,MAAM,CAAC,CAAC,CAAC,GAAG,CAAC,CAAC,CAAC,GAAG,CAAC;YAClC,MAAM,MAAM,GAAG,WAAW,KAAK,SAAS,CAAC,CAAC,CAAC,YAAY,CAAC,CAAC,CAAC,EAAE,CAAC;YAE7D,OAAO,CAAC,GAAG,CAAC,KAAK,MAAM,IAAI,WAAW,GAAG,MAAM,EAAE,CAAC,CAAC;YAEnD,4BAA4B;YAC5B,IAAI,MAAM,EAAE,CAAC;gBACT,IAAI,CAAC;oBACD,MAAM,OAAO,GAAG,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,WAAW,CAAC,CAAC;oBACxD,MAAM,QAAQ,GAAG,EAAE,CAAC;oBACpB,IAAI,OAAO,CAAC,KAAK;wBAAE,QAAQ,CAAC,IAAI,CAAC,OAAO,CAAC,CAAC;oBAC1C,IAAI,OAAO,CAAC,SAAS;wBAAE,QAAQ,CAAC,IAAI,CAAC,WAAW,CAAC,CAAC;oBAClD,IAAI,OAAO,CAAC,QAAQ;wBAAE,QAAQ,CAAC,IAAI,CAAC,UAAU,CAAC,CAAC;oBAChD,IAAI,OAAO,CAAC,UAAU;wBAAE,QAAQ,CAAC,IAAI,CAAC,YAAY,CAAC,CAAC;oBAEpD,IAAI,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;wBACtB,OAAO,CAAC,GAAG,CAAC,iBAAiB,QAAQ,CAAC,IAAI,CAAC,IAAI,CAAC,EAAE,CAAC,CAAC;oBACxD,CAAC;gBACL,CAAC;gBAAC,OAAO,KAAK,EAAE,CAAC;oBACb,OAAO,CAAC,GAAG,CAAC,8BAA+B,KAAe,CAAC,OAAO,EAAE,CAAC,CAAC;gBAC1E,CAAC;YACL,CAAC;QACL,CAAC,CAAC,CAAC;QAEH,OAAO,CAAC,GAAG,EAAE,CAAC;IAClB,CAAC;IAED;;;;OAIG;IACI,aAAa,CAAC,WAAwB;QACzC,OAAO,CAAC,GAAG,CAAC,qBAAqB,WAAW,IAAI,CAAC,CAAC;QAElD,kCAAkC;QAClC,IAAI,IAAI,CAAC,SAAS,CAAC,aAAa,CAAC,WAAW,CAAC,EAAE,CAAC;YAC5C,OAAO,CAAC,KAAK,CAAC,mBAAmB,WAAW,mBAAmB,CAAC,CAAC;YACjE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACpB,CAAC;QAED,qCAAqC;QACrC,MAAM,MAAM,GAAkB;YAC1B,KAAK,EAAE;gBACH,QAAQ,EAAE,6EAA6E;gBACvF,OAAO,EAAE,+BAA+B;gBACxC,QAAQ,EAAE,gBAAgB;gBAC1B,QAAQ,EAAE,8DAA8D;gBACxE,MAAM,EAAE,WAAW;aACtB;YACD,SAAS,EAAE;gBACP,MAAM,EAAE,aAAa;gBACrB,QAAQ,EAAE,aAAa;gBACvB,eAAe,EAAE,aAAa;aACjC;YACD,QAAQ,EAAE;gBACN,MAAM,EAAE,oBAAoB;gBAC5B,MAAM,EAAE,WAAW;gBACnB,WAAW,EAAE,eAAe;aAC/B;YACD,UAAU,EAAE;gBACR,MAAM,EAAE,WAAW;aACtB;YACD,SAAS,EAAE;gBACP,OAAO,EAAE,OAAO;gBAChB,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;gBACnC,SAAS,EAAE,IAAI,IAAI,EAAE,CAAC,WAAW,EAAE;gBACnC,MAAM,EAAE,KAAK;aAChB;SACJ,CAAC;QAEF,8BAA8B;QAC9B,IAAI,CAAC,SAAS,CAAC,YAAY,CAAC,WAAW,EAAE,MAAM,CAAC,CAAC;QAEjD,OAAO,CAAC,GAAG,CAAC,YAAY,WAAW,yBAAyB,CAAC,CAAC;QAC9D,OAAO,CAAC,GAAG,CAAC,qDAAqD,WAAW,cAAc,CAAC,CAAC;QAC5F,OAAO,CAAC,GAAG,CAAC,iEAAiE,CAAC,CAAC;QAC/E,OAAO,CAAC,GAAG,EAAE,CAAC;IAClB,CAAC;IAED;;;;OAIG;IACI,WAAW,CAAC,WAAwB;QACvC,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,aAAa,CAAC,WAAW,CAAC,EAAE,CAAC;YAC7C,OAAO,CAAC,KAAK,CAAC,mBAAmB,WAAW,mBAAmB,CAAC,CAAC;YACjE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACpB,CAAC;QAED,OAAO,CAAC,GAAG,CAAC,YAAY,WAAW,IAAI,CAAC,CAAC;QAEzC,IAAI,CAAC;YACD,MAAM,OAAO,GAAG,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,WAAW,CAAC,CAAC;YAExD,OAAO,CAAC,GAAG,CAAC,gBAAgB,CAAC,CAAC;YAC9B,OAAO,CAAC,GAAG,CAAC,UAAU,CAAC,CAAC;YACxB,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,KAAK,CAAC,CAAC;YAEjC,OAAO,CAAC,GAAG,CAAC,cAAc,CAAC,CAAC;YAC5B,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;YAErC,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;YAC3B,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC;YAEpC,OAAO,CAAC,GAAG,CAAC,eAAe,CAAC,CAAC;YAC7B,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,UAAU,CAAC,CAAC;YAEtC,IAAI,OAAO,CAAC,OAAO,EAAE,CAAC;gBAClB,OAAO,CAAC,GAAG,CAAC,YAAY,CAAC,CAAC;gBAC1B,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,OAAO,CAAC,CAAC;YACvC,CAAC;YAED,IAAI,OAAO,CAAC,QAAQ,EAAE,CAAC;gBACnB,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;gBAC3B,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,QAAQ,CAAC,CAAC;YACxC,CAAC;YAED,OAAO,CAAC,GAAG,CAAC,aAAa,CAAC,CAAC;YAC3B,IAAI,CAAC,YAAY,CAAC,OAAO,CAAC,SAAS,CAAC,CAAC;YACrC,OAAO,CAAC,GAAG,EAAE,CAAC;QAClB,CAAC;QAAC,OAAO,KAAK,EAAE,CAAC;YACb,OAAO,CAAC,KAAK,CAAC,0BAA2B,KAAe,CAAC,OAAO,EAAE,CAAC,CAAC;YACpE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACpB,CAAC;IACL,CAAC;IAED;;;;OAIG;IACI,eAAe,CAAC,WAAwB;QAC3C,OAAO,CAAC,GAAG,CAAC,uBAAuB,WAAW,IAAI,CAAC,CAAC;QAEpD,IAAI,CAAC,IAAI,CAAC,SAAS,CAAC,aAAa,CAAC,WAAW,CAAC,EAAE,CAAC;YAC7C,OAAO,CAAC,KAAK,CAAC,mBAAmB,WAAW,mBAAmB,CAAC,CAAC;YACjE,OAAO,CAAC,IAAI,CAAC,CAAC,CAAC,CAAC;QACpB,CAAC;QAED,IAAI,CAAC;YACD,MAAM,OAAO,GAAG,IAAI,CAAC,SAAS,CAAC,WAAW,CAAC,WAAW,CAAC,CAAC;YACxD,MAAM,UAAU,GAAG,IAAI,CAAC,SAAS,CAAC,eAAe,CAAC,OAAO,CAAC,CAAC;YAE3D,IAAI,UAAU,CAAC,OAAO,EAAE,CAAC;gBACrB,OAAO,CAAC,GAAG,CAAC,8BAA8B,CAAC,CAAC;gBAC5C,OAAO;YACX,CAAC;YAED,IAAI,UAAU,CAAC,MAAM,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBAC/B,OAAO,CAAC,GAAG,CAAC,SAAS,CAAC,CAAC;gBACvB,UAAU,CAAC,MAAM,CAAC,OAAO,CAAC,CAAC,KAAK,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,OAAO,KAAK,EAAE,CAAC,CAAC,CAAC;gBAClE,OAAO,CAAC,GAAG,EAAE,CAAC;YAClB,CAAC;YAED,IAAI,UAAU,CAAC,QAAQ,IAAI,UAAU,CAAC,QAAQ,CAAC,MAAM,GAAG,CAAC,EAAE,CAAC;gBACxD,OAAO,CAAC,GAAG,CAAC,WAAW,CAAC,CAAC;gBACzB,UAAU,CAAC,QAAQ,CAAC,OAAO,CAAC,CAAC,OAAO,EAAE,EAAE,CAAC,OAAO,CAAC,GAAG,CAAC,OAA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package/dist/bin/commands/deploy.d.ts

@@ -13,7 +13,7 @@ export declare function deployCommand(options: {
     requireApproval?: string;
     profile?: string;
     stage?: "dev" | "prod";
-    quiltStackArn?: string;
+    stackArn?: string;
     benchlingSecret?: string;
     imageTag?: string;
     region?: string;

package/dist/bin/commands/deploy.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"deploy.d.ts","sourceRoot":"","sources":["../../../bin/commands/deploy.ts"],"names":[],"mappings":"AAeA;;;;;;;;GAQG;AACH,wBAAsB,aAAa,CAAC,OAAO,EAAE;IACzC,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,KAAK,CAAC,EAAE,KAAK,GAAG,MAAM,CAAC;IACvB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;CACpB,GAAG,OAAO,CAAC,IAAI,CAAC,CAqEhB"}
+{"version":3,"file":"deploy.d.ts","sourceRoot":"","sources":["../../../bin/commands/deploy.ts"],"names":[],"mappings":"AA6CA;;;;;;;;GAQG;AACH,wBAAsB,aAAa,CAAC,OAAO,EAAE;IACzC,GAAG,CAAC,EAAE,OAAO,CAAC;IACd,cAAc,CAAC,EAAE,OAAO,CAAC;IACzB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,KAAK,CAAC,EAAE,KAAK,GAAG,MAAM,CAAC;IACvB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;CACpB,GAAG,OAAO,CAAC,IAAI,CAAC,CA8FhB"}

package/dist/bin/commands/deploy.js

@@ -14,6 +14,33 @@ const config_resolver_1 = require("../../lib/utils/config-resolver");
 const benchling_webhook_1 = require("../benchling-webhook");
 const xdg_config_1 = require("../../lib/xdg-config");
 const client_cloudformation_1 = require("@aws-sdk/client-cloudformation");
+/**
+ * Get the most recent dev version tag (without 'v' prefix)
+ * Returns null if no dev tags found
+ */
+function getLatestDevVersion() {
+    try {
+        // Get all tags matching dev pattern: v{version}-{timestamp}Z
+        const tags = (0, child_process_1.execSync)("git tag --list", { encoding: "utf8" })
+            .trim()
+            .split("\n")
+            .filter(tag => /^v\d+\.\d+\.\d+-\d{8}T\d{6}Z$/.test(tag));
+        if (tags.length === 0) {
+            return null;
+        }
+        // Sort by timestamp (newest first)
+        tags.sort((a, b) => {
+            const timestampA = a.match(/(\d{8}T\d{6}Z)$/)?.[1] || "";
+            const timestampB = b.match(/(\d{8}T\d{6}Z)$/)?.[1] || "";
+            return timestampB.localeCompare(timestampA);
+        });
+        // Return latest tag without 'v' prefix
+        return tags[0].substring(1);
+    }
+    catch {
+        return null;
+    }
+}
 /**
  * Deploy command for v0.7.0 configuration architecture
  *
@@ -47,14 +74,41 @@ async function deployCommand(options) {
         console.error(chalk_1.default.red(error.message));
         console.log();
         console.log(chalk_1.default.yellow("Run setup wizard to create configuration:"));
-        console.log(chalk_1.default.cyan("  npm run setup"));
+        // Suggest stage-specific setup command
+        const setupCmd = stage === "dev" ? "setup:dev" : stage === "prod" ? "setup:prod" : "setup";
+        const profileArg = profileName !== "default" ? ` --profile ${profileName}` : "";
+        console.log(chalk_1.default.cyan(`  npm run ${setupCmd}${profileArg}`));
         console.log();
         process.exit(1);
     }
     // Get required parameters with priority: CLI options > Profile config
-    const quiltStackArn = options.quiltStackArn || config.quilt.stackArn;
+    const quiltStackArn = options.stackArn || config.quilt.stackArn;
     const benchlingSecret = options.benchlingSecret || config.benchling.secretArn;
-    const imageTag = options.imageTag || config.deployment.imageTag || "latest";
+    // Auto-detect image tag based on profile
+    // For dev profiles, use the latest dev tag (without 'v' prefix)
+    // For prod profiles, use config or "latest"
+    let imageTag;
+    if (options.imageTag) {
+        // CLI option takes highest priority
+        imageTag = options.imageTag;
+    }
+    else if (profileName === "dev") {
+        // Auto-detect latest dev tag for dev profile
+        const devVersion = getLatestDevVersion();
+        if (devVersion) {
+            imageTag = devVersion;
+            console.log(chalk_1.default.dim(`✓ Auto-detected dev image tag: ${imageTag}\n`));
+        }
+        else {
+            console.error(chalk_1.default.yellow("⚠️  No dev tags found, using 'latest'"));
+            console.error(chalk_1.default.yellow("   Create a dev tag with: npm run version:tag:dev\n"));
+            imageTag = "latest";
+        }
+    }
+    else {
+        // Use config or default to "latest"
+        imageTag = config.deployment.imageTag || "latest";
+    }
     // Validate required parameters
     const missingParams = [];
     if (!quiltStackArn)
@@ -79,7 +133,7 @@ async function deployCommand(options) {
         process.exit(1);
     }
     // Deploy (both parameters validated above)
-    return await deploy(quiltStackArn, benchlingSecret, {
+    return await deploy(quiltStackArn, benchlingSecret, config, {
         ...options,
         imageTag,
         profileName,
@@ -89,12 +143,12 @@ async function deployCommand(options) {
 /**
  * Deploy the Benchling webhook stack
  */
-async function deploy(quiltStackArn, benchlingSecret, options) {
+async function deploy(stackArn, benchlingSecret, config, options) {
     const spinner = (0, ora_1.default)("Validating parameters...").start();
     // Parse stack ARN to extract region/account
     let parsed;
     try {
-        parsed = (0, config_resolver_1.parseStackArn)(quiltStackArn);
+        parsed = (0, config_resolver_1.parseStackArn)(stackArn);
         spinner.succeed("Stack ARN validated");
     }
     catch (error) {
@@ -179,7 +233,7 @@ async function deploy(quiltStackArn, benchlingSecret, options) {
     console.log(`  ${chalk_1.default.bold("Profile:")}                   ${options.profileName}`);
     console.log();
     console.log(chalk_1.default.bold("  Stack Parameters:"));
-    console.log(`    ${chalk_1.default.bold("Quilt Stack ARN:")}         ${(0, config_1.maskArn)(quiltStackArn)}`);
+    console.log(`    ${chalk_1.default.bold("Quilt Stack ARN:")}         ${(0, config_1.maskArn)(stackArn)}`);
     console.log(`    ${chalk_1.default.bold("Benchling Secret:")}        ${benchlingSecret}`);
     console.log(`    ${chalk_1.default.bold("Docker Image Tag:")}        ${options.imageTag}`);
     console.log();
@@ -206,10 +260,14 @@ async function deploy(quiltStackArn, benchlingSecret, options) {
     console.log();
     try {
         // Build CloudFormation parameters
+        // Parameter names must match the CfnParameter IDs in BenchlingWebhookStack
         const parameters = [
-            `QuiltStackARN=${quiltStackArn}`,
+            `QuiltStackARN=${stackArn}`,
             `BenchlingSecretARN=${benchlingSecret}`,
             `ImageTag=${options.imageTag}`,
+            `PackageBucket=${config.packages.bucket}`,
+            `QuiltDatabase=${config.quilt.database || ""}`,
+            `LogLevel=${config.logging?.level || "INFO"}`,
         ];
         const parametersArg = parameters.map(p => `--parameters ${p}`).join(" ");
         const cdkCommand = `npx cdk deploy --require-approval ${options.requireApproval || "never"} ${parametersArg}`;
@@ -219,7 +277,7 @@ async function deploy(quiltStackArn, benchlingSecret, options) {
                 ...process.env,
                 CDK_DEFAULT_ACCOUNT: deployAccount,
                 CDK_DEFAULT_REGION: deployRegion,
-                QUILT_STACK_ARN: quiltStackArn,
+                QUILT_STACK_ARN: stackArn,
                 BENCHLING_SECRET: benchlingSecret,
             },
         });

package/dist/bin/commands/deploy.js.map

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package/dist/bin/commands/infer-quilt-config.d.ts

@@ -9,18 +9,16 @@
  *
  * @module scripts/infer-quilt-config
  */
-import { DerivedConfig } from "../../lib/types/config";
 /**
  * Result of Quilt configuration inference
  */
 interface InferenceResult {
-    catalogUrl?: string;
-    quiltUserBucket?: string;
-    quiltDatabase?: string;
-    quiltStackArn?: string;
-    quiltRegion?: string;
-    queueArn?: string;
-    registryUrl?: string;
+    catalog?: string;
+    database?: string;
+    stackArn?: string;
+    region?: string;
+    account?: string;
+    queueUrl?: string;
     source: string;
 }
 /**
@@ -39,12 +37,5 @@ export declare function inferQuiltConfig(options: {
     profile?: string;
     interactive?: boolean;
 }): Promise<InferenceResult>;
-/**
- * Converts inference result to DerivedConfig
- *
- * @param result - Inference result
- * @returns DerivedConfig object
- */
-export declare function inferenceResultToDerivedConfig(result: InferenceResult): DerivedConfig;
 export {};
 //# sourceMappingURL=infer-quilt-config.d.ts.map

package/dist/bin/commands/infer-quilt-config.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"infer-quilt-config.d.ts","sourceRoot":"","sources":["../../../bin/commands/infer-quilt-config.ts"],"names":[],"mappings":";AACA;;;;;;;;;GASG;AAMH,OAAO,EAAE,aAAa,EAAE,MAAM,wBAAwB,CAAC;AAsBvD;;GAEG;AACH,UAAU,eAAe;IACrB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,MAAM,EAAE,MAAM,CAAC;CAClB;AA4ID;;;;;;;;;;GAUG;AACH,wBAAsB,gBAAgB,CAAC,OAAO,EAAE;IAC5C,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,OAAO,CAAC;CACzB,GAAG,OAAO,CAAC,eAAe,CAAC,CA8F3B;AAED;;;;;GAKG;AACH,wBAAgB,8BAA8B,CAAC,MAAM,EAAE,eAAe,GAAG,aAAa,CAgCrF"}
+{"version":3,"file":"infer-quilt-config.d.ts","sourceRoot":"","sources":["../../../bin/commands/infer-quilt-config.ts"],"names":[],"mappings":";AACA;;;;;;;;;GASG;AA4BH;;GAEG;AACH,UAAU,eAAe;IACrB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,MAAM,EAAE,MAAM,CAAC;CAClB;AAmJD;;;;;;;;;;GAUG;AACH,wBAAsB,gBAAgB,CAAC,OAAO,EAAE;IAC5C,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,OAAO,CAAC;CACzB,GAAG,OAAO,CAAC,eAAe,CAAC,CA8F3B"}