@quiltdata/benchling-webhook 0.6.3-20251104T182406Z → 0.7.2-20251106T003353Z

package/dist/bin/commands/health-check.js

@@ -0,0 +1,357 @@
+#!/usr/bin/env node
+"use strict";
+/**
+ * Configuration Health Check Command
+ *
+ * Post-setup validation that checks:
+ * - Configuration file integrity
+ * - Secrets synchronization status
+ * - Deployment configuration
+ *
+ * @module commands/health-check
+ */
+var __createBinding = (this && this.__createBinding) || (Object.create ? (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    var desc = Object.getOwnPropertyDescriptor(m, k);
+    if (!desc || ("get" in desc ? !m.__esModule : desc.writable || desc.configurable)) {
+      desc = { enumerable: true, get: function() { return m[k]; } };
+    }
+    Object.defineProperty(o, k2, desc);
+}) : (function(o, m, k, k2) {
+    if (k2 === undefined) k2 = k;
+    o[k2] = m[k];
+}));
+var __setModuleDefault = (this && this.__setModuleDefault) || (Object.create ? (function(o, v) {
+    Object.defineProperty(o, "default", { enumerable: true, value: v });
+}) : function(o, v) {
+    o["default"] = v;
+});
+var __importStar = (this && this.__importStar) || (function () {
+    var ownKeys = function(o) {
+        ownKeys = Object.getOwnPropertyNames || function (o) {
+            var ar = [];
+            for (var k in o) if (Object.prototype.hasOwnProperty.call(o, k)) ar[ar.length] = k;
+            return ar;
+        };
+        return ownKeys(o);
+    };
+    return function (mod) {
+        if (mod && mod.__esModule) return mod;
+        var result = {};
+        if (mod != null) for (var k = ownKeys(mod), i = 0; i < k.length; i++) if (k[i] !== "default") __createBinding(result, mod, k[i]);
+        __setModuleDefault(result, mod);
+        return result;
+    };
+})();
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.runHealthChecks = runHealthChecks;
+exports.healthCheckCommand = healthCheckCommand;
+const xdg_config_1 = require("../../lib/xdg-config");
+const fs_1 = require("fs");
+const client_secrets_manager_1 = require("@aws-sdk/client-secrets-manager");
+const chalk_1 = __importDefault(require("chalk"));
+const path_1 = require("path");
+/**
+ * Checks XDG configuration file integrity
+ */
+async function checkXDGIntegrity(xdgConfig, profile) {
+    try {
+        // Check if profile exists
+        if (!xdgConfig.profileExists(profile)) {
+            return {
+                check: "xdg-integrity",
+                status: "fail",
+                message: "Profile does not exist",
+                details: { profile, recommendation: "Run setup wizard to create configuration" },
+            };
+        }
+        // Try to read and validate profile config
+        try {
+            const config = xdgConfig.readProfile(profile);
+            // Validate required fields
+            if (!config.quilt || !config.benchling || !config.packages || !config.deployment) {
+                return {
+                    check: "xdg-integrity",
+                    status: "fail",
+                    message: "Configuration is missing required sections",
+                    details: { profile },
+                };
+            }
+            return {
+                check: "xdg-integrity",
+                status: "pass",
+                message: "XDG configuration integrity verified",
+                details: { profile },
+            };
+        }
+        catch (error) {
+            return {
+                check: "xdg-integrity",
+                status: "fail",
+                message: `Configuration validation failed: ${error.message}`,
+                details: { profile, error: error.message },
+            };
+        }
+    }
+    catch (error) {
+        return {
+            check: "xdg-integrity",
+            status: "fail",
+            message: `Integrity check failed: ${error.message}`,
+            details: { error: error.message },
+        };
+    }
+}
+/**
+ * Checks if local config and remote secrets are in sync
+ */
+async function checkSecretsSync(xdgConfig, profile) {
+    try {
+        // Check if profile exists
+        if (!xdgConfig.profileExists(profile)) {
+            return {
+                check: "secrets-sync",
+                status: "warn",
+                message: "No configuration found",
+                details: { profile, recommendation: "Run setup wizard first" },
+            };
+        }
+        // Load profile config
+        const config = xdgConfig.readProfile(profile);
+        if (!config.benchling.secretArn) {
+            return {
+                check: "secrets-sync",
+                status: "warn",
+                message: "No secrets configured",
+                details: { profile, recommendation: "Run 'benchling-webhook sync-secrets' to sync secrets" },
+            };
+        }
+        // Get local config modification time
+        const configPath = (0, path_1.join)(xdgConfig["baseDir"], profile, "config.json");
+        const configStats = (0, fs_1.statSync)(configPath);
+        const localModifiedAt = configStats.mtime;
+        // Get remote secret modification time
+        const region = config.deployment.region;
+        const clientConfig = { region };
+        // If AWS profile is configured, use it
+        if (process.env.AWS_PROFILE) {
+            const { fromIni } = await Promise.resolve().then(() => __importStar(require("@aws-sdk/credential-providers")));
+            clientConfig.credentials = fromIni({ profile: process.env.AWS_PROFILE });
+        }
+        const client = new client_secrets_manager_1.SecretsManagerClient(clientConfig);
+        const command = new client_secrets_manager_1.DescribeSecretCommand({ SecretId: config.benchling.secretArn });
+        const secretMetadata = await client.send(command);
+        if (!secretMetadata.LastChangedDate) {
+            return {
+                check: "secrets-sync",
+                status: "warn",
+                message: "Cannot determine secret modification time",
+                details: { secretArn: config.benchling.secretArn },
+            };
+        }
+        const remoteModifiedAt = secretMetadata.LastChangedDate;
+        // Compare times (allow 1 second tolerance for filesystem precision)
+        const timeDiffMs = Math.abs(localModifiedAt.getTime() - remoteModifiedAt.getTime());
+        const timeDiffSeconds = Math.floor(timeDiffMs / 1000);
+        if (localModifiedAt > remoteModifiedAt && timeDiffMs > 1000) {
+            // Local is newer - secrets need to be synced
+            const ageMinutes = Math.floor(timeDiffMs / (1000 * 60));
+            const ageHours = Math.floor(ageMinutes / 60);
+            const ageDays = Math.floor(ageHours / 24);
+            let ageDescription;
+            if (ageDays > 0) {
+                ageDescription = `${ageDays} day${ageDays > 1 ? "s" : ""}`;
+            }
+            else if (ageHours > 0) {
+                ageDescription = `${ageHours} hour${ageHours > 1 ? "s" : ""}`;
+            }
+            else {
+                ageDescription = `${ageMinutes} minute${ageMinutes > 1 ? "s" : ""}`;
+            }
+            return {
+                check: "secrets-sync",
+                status: "warn",
+                message: `Local config is ${ageDescription} newer than remote secrets`,
+                details: {
+                    localModifiedAt: localModifiedAt.toISOString(),
+                    remoteModifiedAt: remoteModifiedAt.toISOString(),
+                    timeDiffSeconds,
+                    recommendation: "Run 'benchling-webhook sync-secrets --force' to sync changes",
+                },
+            };
+        }
+        return {
+            check: "secrets-sync",
+            status: "pass",
+            message: "Local config and remote secrets are in sync",
+            details: {
+                localModifiedAt: localModifiedAt.toISOString(),
+                remoteModifiedAt: remoteModifiedAt.toISOString(),
+                timeDiffSeconds,
+            },
+        };
+    }
+    catch (error) {
+        return {
+            check: "secrets-sync",
+            status: "fail",
+            message: `Sync check failed: ${error.message}`,
+            details: { error: error.message },
+        };
+    }
+}
+/**
+ * Checks deployment configuration
+ */
+async function checkDeploymentConfig(xdgConfig, profile) {
+    try {
+        // Check for active deployment
+        const deployment = xdgConfig.getActiveDeployment(profile, "prod");
+        if (!deployment) {
+            return {
+                check: "deployment-config",
+                status: "warn",
+                message: "No deployment found",
+                details: {
+                    profile,
+                    recommendation: "Run 'benchling-webhook deploy' to deploy the stack",
+                },
+            };
+        }
+        // Check for webhook endpoint
+        if (!deployment.endpoint) {
+            return {
+                check: "deployment-config",
+                status: "warn",
+                message: "Webhook endpoint not configured",
+                details: { profile },
+            };
+        }
+        // Check deployment age
+        const deployedDate = new Date(deployment.timestamp);
+        const ageInDays = (Date.now() - deployedDate.getTime()) / (1000 * 60 * 60 * 24);
+        if (ageInDays > 30) {
+            return {
+                check: "deployment-config",
+                status: "warn",
+                message: `Deployment is ${Math.floor(ageInDays)} days old`,
+                details: {
+                    deployedAt: deployment.timestamp,
+                    ageInDays: Math.floor(ageInDays),
+                    recommendation: "Consider updating deployment",
+                },
+            };
+        }
+        return {
+            check: "deployment-config",
+            status: "pass",
+            message: "Deployment configuration valid",
+            details: {
+                endpoint: deployment.endpoint,
+                deployedAt: deployment.timestamp,
+                stackName: deployment.stackName,
+                region: deployment.region,
+            },
+        };
+    }
+    catch (error) {
+        return {
+            check: "deployment-config",
+            status: "fail",
+            message: `Deployment check failed: ${error.message}`,
+            details: { error: error.message },
+        };
+    }
+}
+/**
+ * Runs all health checks
+ */
+async function runHealthChecks(profile = "default") {
+    const xdgConfig = new xdg_config_1.XDGConfig();
+    const checks = [];
+    // Run all checks in parallel
+    const results = await Promise.all([
+        checkXDGIntegrity(xdgConfig, profile),
+        checkSecretsSync(xdgConfig, profile),
+        checkDeploymentConfig(xdgConfig, profile),
+    ]);
+    checks.push(...results);
+    // Determine overall status
+    const failCount = checks.filter((c) => c.status === "fail").length;
+    const warnCount = checks.filter((c) => c.status === "warn").length;
+    let overall;
+    if (failCount > 0) {
+        overall = "unhealthy";
+    }
+    else if (warnCount > 0) {
+        overall = "degraded";
+    }
+    else {
+        overall = "healthy";
+    }
+    return {
+        overall,
+        checks,
+        timestamp: new Date().toISOString(),
+        profile,
+    };
+}
+/**
+ * Formats health status for console output
+ */
+function formatHealthStatus(status) {
+    const lines = [];
+    lines.push("╔═══════════════════════════════════════════════════════════╗");
+    lines.push("║   Configuration Health Check                              ║");
+    lines.push("╚═══════════════════════════════════════════════════════════╝");
+    lines.push("");
+    lines.push(`Profile: ${status.profile}`);
+    lines.push(`Timestamp: ${status.timestamp}`);
+    const overallColor = status.overall === "healthy" ? chalk_1.default.green : status.overall === "degraded" ? chalk_1.default.yellow : chalk_1.default.red;
+    lines.push(`Overall Status: ${overallColor(status.overall.toUpperCase())}`);
+    lines.push("");
+    lines.push("Checks:");
+    for (const check of status.checks) {
+        const icon = check.status === "pass" ? chalk_1.default.green("✓") : check.status === "warn" ? chalk_1.default.yellow("⚠") : chalk_1.default.red("❌");
+        lines.push(`  ${icon} ${check.check}: ${check.message}`);
+        if (check.details) {
+            Object.entries(check.details).forEach(([key, value]) => {
+                if (key !== "error" && key !== "recommendation") {
+                    lines.push(`    ${chalk_1.default.dim(`${key}: ${value}`)}`);
+                }
+            });
+            if (check.details.recommendation) {
+                lines.push(`    ${chalk_1.default.cyan(`→ ${check.details.recommendation}`)}`);
+            }
+        }
+        lines.push("");
+    }
+    return lines.join("\n");
+}
+/**
+ * Health check command handler
+ */
+async function healthCheckCommand(options = {}) {
+    const { profile = "default", json = false } = options;
+    const status = await runHealthChecks(profile);
+    if (json) {
+        console.log(JSON.stringify(status, null, 2));
+    }
+    else {
+        console.log(formatHealthStatus(status));
+    }
+    // Exit with appropriate code
+    if (status.overall === "unhealthy") {
+        process.exit(1);
+    }
+    else if (status.overall === "degraded") {
+        process.exit(2);
+    }
+    else {
+        process.exit(0);
+    }
+}
+//# sourceMappingURL=health-check.js.map

package/dist/bin/commands/health-check.js.map

@@ -0,0 +1 @@
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package/dist/bin/commands/infer-quilt-config.d.ts

@@ -0,0 +1,50 @@
+#!/usr/bin/env node
+/**
+ * Quilt Catalog Auto-Inference
+ *
+ * Automatically infers Quilt catalog configuration from:
+ * 1. quilt3 CLI command (`quilt3 config`)
+ * 2. AWS CloudFormation stack inspection
+ * 3. Interactive catalog selection (if multiple catalogs available)
+ *
+ * @module scripts/infer-quilt-config
+ */
+import { DerivedConfig } from "../../lib/types/config";
+/**
+ * Result of Quilt configuration inference
+ */
+interface InferenceResult {
+    catalogUrl?: string;
+    quiltUserBucket?: string;
+    quiltDatabase?: string;
+    quiltStackArn?: string;
+    quiltRegion?: string;
+    queueArn?: string;
+    registryUrl?: string;
+    source: string;
+}
+/**
+ * Infers Quilt configuration from multiple sources
+ *
+ * Priority order:
+ * 1. quilt3 CLI command (`quilt3 config`)
+ * 2. CloudFormation stack inspection
+ * 3. Interactive selection if multiple options
+ *
+ * @param options - Inference options
+ * @returns Inferred configuration
+ */
+export declare function inferQuiltConfig(options: {
+    region?: string;
+    profile?: string;
+    interactive?: boolean;
+}): Promise<InferenceResult>;
+/**
+ * Converts inference result to DerivedConfig
+ *
+ * @param result - Inference result
+ * @returns DerivedConfig object
+ */
+export declare function inferenceResultToDerivedConfig(result: InferenceResult): DerivedConfig;
+export {};
+//# sourceMappingURL=infer-quilt-config.d.ts.map

package/dist/bin/commands/infer-quilt-config.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"infer-quilt-config.d.ts","sourceRoot":"","sources":["../../../bin/commands/infer-quilt-config.ts"],"names":[],"mappings":";AACA;;;;;;;;;GASG;AAMH,OAAO,EAAE,aAAa,EAAE,MAAM,wBAAwB,CAAC;AAsBvD;;GAEG;AACH,UAAU,eAAe;IACrB,UAAU,CAAC,EAAE,MAAM,CAAC;IACpB,eAAe,CAAC,EAAE,MAAM,CAAC;IACzB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,aAAa,CAAC,EAAE,MAAM,CAAC;IACvB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,QAAQ,CAAC,EAAE,MAAM,CAAC;IAClB,WAAW,CAAC,EAAE,MAAM,CAAC;IACrB,MAAM,EAAE,MAAM,CAAC;CAClB;AA4ID;;;;;;;;;;GAUG;AACH,wBAAsB,gBAAgB,CAAC,OAAO,EAAE;IAC5C,MAAM,CAAC,EAAE,MAAM,CAAC;IAChB,OAAO,CAAC,EAAE,MAAM,CAAC;IACjB,WAAW,CAAC,EAAE,OAAO,CAAC;CACzB,GAAG,OAAO,CAAC,eAAe,CAAC,CA8F3B;AAED;;;;;GAKG;AACH,wBAAgB,8BAA8B,CAAC,MAAM,EAAE,eAAe,GAAG,aAAa,CAgCrF"}