@quiltdata/benchling-webhook 0.5.4-20251102T020826Z → 0.5.4-20251103T180145Z

package/dist/lib/configuration-saver.js

@@ -0,0 +1,145 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ConfigurationSaver = void 0;
+const xdg_config_1 = require("./xdg-config");
+const lodash_merge_1 = __importDefault(require("lodash.merge"));
+/**
+ * Configuration saver for persisting configuration to XDG files
+ */
+class ConfigurationSaver {
+    /**
+     * Get or create default XDG config instance
+     */
+    static getDefaultXDGConfig() {
+        if (!ConfigurationSaver.defaultXDGConfig) {
+            ConfigurationSaver.defaultXDGConfig = new xdg_config_1.XDGConfig();
+            ConfigurationSaver.defaultXDGConfig.ensureDirectories();
+        }
+        return ConfigurationSaver.defaultXDGConfig;
+    }
+    /**
+     * Save configuration to user config file
+     *
+     * @param config - Configuration to save
+     * @param options - Save options
+     * @returns Saved configuration with metadata
+     */
+    static async save(config, options = {}) {
+        const { xdgConfig = ConfigurationSaver.getDefaultXDGConfig(), source = "wizard", skipValidation = false, merge: shouldMerge = false, } = options;
+        // Validate configuration if not skipped
+        if (!skipValidation) {
+            ConfigurationSaver.validateConfig(config);
+        }
+        // Merge with existing config if requested
+        let finalConfig = { ...config };
+        if (shouldMerge) {
+            try {
+                const existingConfig = xdgConfig.readConfig("user");
+                finalConfig = (0, lodash_merge_1.default)({}, existingConfig, config);
+            }
+            catch {
+                // If no existing config, just use the new config
+                finalConfig = { ...config };
+            }
+        }
+        // Add metadata
+        const metadata = ConfigurationSaver.getMetadata({ source });
+        const configWithMetadata = {
+            ...finalConfig,
+            _metadata: metadata,
+        };
+        // Save to user config
+        xdgConfig.writeConfig("user", configWithMetadata);
+        // If source indicates inference, also save to derived config
+        if (source === "quilt-cli" || source === "inference") {
+            await ConfigurationSaver.saveToDerived(config, {
+                xdgConfig,
+                source,
+            });
+        }
+        return finalConfig;
+    }
+    /**
+     * Save inferred configuration to derived config file
+     *
+     * @param config - Inferred configuration
+     * @param options - Save options
+     */
+    static async saveToDerived(config, options = {}) {
+        const { xdgConfig = ConfigurationSaver.getDefaultXDGConfig(), source = "inferred", } = options;
+        // Add inference metadata
+        const metadata = ConfigurationSaver.getMetadata({
+            source,
+            inferredAt: new Date().toISOString(),
+        });
+        const configWithMetadata = {
+            ...config,
+            _metadata: metadata,
+        };
+        // Save to derived config
+        xdgConfig.writeConfig("derived", configWithMetadata);
+    }
+    /**
+     * Save deployment outputs to deployment config file
+     *
+     * @param config - Deployment configuration
+     * @param options - Save options
+     */
+    static async saveToDeployment(config, options = {}) {
+        const { xdgConfig = ConfigurationSaver.getDefaultXDGConfig(), source = "deployment", } = options;
+        // Add deployment metadata
+        const metadata = ConfigurationSaver.getMetadata({ source });
+        const configWithMetadata = {
+            ...config,
+            _metadata: metadata,
+        };
+        // Save to deployment config
+        xdgConfig.writeConfig("deploy", configWithMetadata);
+    }
+    /**
+     * Create metadata for configuration
+     *
+     * @param options - Metadata options
+     * @returns Configuration metadata
+     */
+    static getMetadata(options = {}) {
+        return {
+            savedAt: new Date().toISOString(),
+            source: options.source || "unknown",
+            version: ConfigurationSaver.getVersion(),
+            ...(options.inferredAt && { inferredAt: options.inferredAt }),
+        };
+    }
+    /**
+     * Get the current version
+     *
+     * @returns Version string
+     */
+    static getVersion() {
+        // For now, return a static version
+        // In production, this would read from package.json
+        return "0.6.0";
+    }
+    /**
+     * Validate configuration before saving
+     *
+     * @param config - Configuration to validate
+     * @throws {Error} If configuration is invalid
+     */
+    static validateConfig(config) {
+        // Check if config is empty
+        if (Object.keys(config).length === 0) {
+            throw new Error("Configuration validation failed: Configuration cannot be empty");
+        }
+        // Basic validation passed
+    }
+}
+exports.ConfigurationSaver = ConfigurationSaver;
+/**
+ * Default XDG config instance
+ */
+ConfigurationSaver.defaultXDGConfig = null;
+//# sourceMappingURL=configuration-saver.js.map

package/dist/lib/configuration-saver.js.map

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package/dist/lib/configuration-validator.d.ts

@@ -0,0 +1,63 @@
+/**
+ * Configuration object for validation
+ */
+export interface Configuration {
+    catalogUrl?: string;
+    benchlingTenant?: string;
+    benchlingClientId?: string;
+    benchlingClientSecret?: string;
+    benchlingAppDefinitionId?: string;
+    quiltUserBucket?: string;
+    quiltRegion?: string;
+    [key: string]: string | undefined;
+}
+/**
+ * Validation options
+ */
+export interface ValidationOptions {
+    skipBenchlingValidation?: boolean;
+    skipS3Validation?: boolean;
+}
+/**
+ * Comprehensive validation result
+ */
+export interface ComprehensiveValidationResult {
+    isValid: boolean;
+    errors: string[];
+    warnings?: string[];
+}
+/**
+ * Comprehensive configuration validator
+ *
+ * Combines all validation checks (Benchling + S3) and provides
+ * comprehensive validation results with aggregated errors.
+ */
+export declare class ConfigurationValidator {
+    /**
+     * Required configuration fields
+     */
+    private static readonly REQUIRED_FIELDS;
+    /**
+     * Validate entire configuration
+     *
+     * @param config - Configuration to validate
+     * @param options - Validation options
+     * @returns Comprehensive validation result
+     */
+    static validate(config: Configuration, options?: ValidationOptions): Promise<ComprehensiveValidationResult>;
+    /**
+     * Validate catalog URL format
+     *
+     * @param catalogUrl - Catalog URL to validate
+     * @returns True if URL format is valid
+     */
+    static validateCatalogUrl(catalogUrl: string): boolean;
+    /**
+     * Check for missing required fields
+     *
+     * @param config - Configuration to check
+     * @returns Array of missing field names
+     */
+    static checkRequiredFields(config: Configuration): string[];
+}
+//# sourceMappingURL=configuration-validator.d.ts.map

package/dist/lib/configuration-validator.d.ts.map

@@ -0,0 +1 @@
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package/dist/lib/configuration-validator.js

@@ -0,0 +1,136 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ConfigurationValidator = void 0;
+const benchling_auth_validator_1 = require("./benchling-auth-validator");
+const s3_bucket_validator_1 = require("./s3-bucket-validator");
+/**
+ * Comprehensive configuration validator
+ *
+ * Combines all validation checks (Benchling + S3) and provides
+ * comprehensive validation results with aggregated errors.
+ */
+class ConfigurationValidator {
+    /**
+     * Validate entire configuration
+     *
+     * @param config - Configuration to validate
+     * @param options - Validation options
+     * @returns Comprehensive validation result
+     */
+    static async validate(config, options = {}) {
+        const errors = [];
+        const warnings = [];
+        // Check required fields
+        const missingFields = ConfigurationValidator.checkRequiredFields(config);
+        if (missingFields.length > 0) {
+            errors.push(`Missing required fields: ${missingFields.join(", ")}`);
+        }
+        // Validate catalog URL format
+        if (config.catalogUrl && !ConfigurationValidator.validateCatalogUrl(config.catalogUrl)) {
+            errors.push("Invalid catalog URL");
+        }
+        else if (!config.catalogUrl) {
+            errors.push("Invalid catalog URL");
+        }
+        // If basic validation fails, return early
+        if (errors.length > 0 && (options.skipBenchlingValidation || options.skipS3Validation)) {
+            return {
+                isValid: false,
+                errors,
+                warnings: warnings.length > 0 ? warnings : undefined,
+            };
+        }
+        // Validate Benchling authentication
+        if (!options.skipBenchlingValidation && config.benchlingTenant && config.benchlingClientId && config.benchlingClientSecret) {
+            try {
+                const benchlingCredentials = {
+                    tenant: config.benchlingTenant,
+                    clientId: config.benchlingClientId,
+                    clientSecret: config.benchlingClientSecret,
+                };
+                const benchlingResult = await benchling_auth_validator_1.BenchlingAuthValidator.validate(benchlingCredentials);
+                if (!benchlingResult.isValid) {
+                    errors.push(...benchlingResult.errors);
+                }
+                if (benchlingResult.warnings) {
+                    warnings.push(...benchlingResult.warnings);
+                }
+            }
+            catch (error) {
+                if (error instanceof Error) {
+                    errors.push(`Benchling validation failed: ${error.message}`);
+                }
+            }
+        }
+        // Validate S3 bucket access
+        if (!options.skipS3Validation && config.quiltUserBucket && config.quiltRegion) {
+            try {
+                const s3Config = {
+                    bucketName: config.quiltUserBucket,
+                    region: config.quiltRegion,
+                };
+                const s3Result = await s3_bucket_validator_1.S3BucketValidator.validate(s3Config);
+                if (!s3Result.hasAccess) {
+                    errors.push(...s3Result.errors);
+                }
+            }
+            catch (error) {
+                if (error instanceof Error) {
+                    errors.push(`S3 validation failed: ${error.message}`);
+                }
+            }
+        }
+        return {
+            isValid: errors.length === 0,
+            errors,
+            warnings: warnings.length > 0 ? warnings : undefined,
+        };
+    }
+    /**
+     * Validate catalog URL format
+     *
+     * @param catalogUrl - Catalog URL to validate
+     * @returns True if URL format is valid
+     */
+    static validateCatalogUrl(catalogUrl) {
+        if (!catalogUrl || catalogUrl.trim() === "") {
+            return false;
+        }
+        try {
+            const url = new URL(catalogUrl);
+            return url.protocol === "http:" || url.protocol === "https:";
+        }
+        catch {
+            return false;
+        }
+    }
+    /**
+     * Check for missing required fields
+     *
+     * @param config - Configuration to check
+     * @returns Array of missing field names
+     */
+    static checkRequiredFields(config) {
+        const missing = [];
+        for (const field of ConfigurationValidator.REQUIRED_FIELDS) {
+            if (!config[field] || config[field]?.trim() === "") {
+                missing.push(field);
+            }
+        }
+        return missing;
+    }
+}
+exports.ConfigurationValidator = ConfigurationValidator;
+/**
+ * Required configuration fields
+ */
+ConfigurationValidator.REQUIRED_FIELDS = [
+    "catalogUrl",
+    "benchlingTenant",
+    "benchlingClientId",
+    "benchlingClientSecret",
+    "benchlingAppDefinitionId",
+    "quiltUserBucket",
+    "quiltRegion",
+];
+//# sourceMappingURL=configuration-validator.js.map

package/dist/lib/configuration-validator.js.map

@@ -0,0 +1 @@
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package/dist/lib/configuration-wizard.d.ts

@@ -0,0 +1,52 @@
+/**
+ * Configuration wizard options
+ */
+export interface WizardOptions {
+    partialConfig?: Record<string, string | number | boolean>;
+}
+/**
+ * Interactive configuration wizard for completing missing configuration details
+ */
+export declare class ConfigurationWizard {
+    /**
+     * Required configuration fields
+     */
+    private static readonly REQUIRED_FIELDS;
+    /**
+     * Optional configuration fields
+     */
+    private static readonly OPTIONAL_FIELDS;
+    /**
+     * Run the configuration wizard
+     */
+    static run(options: WizardOptions): Promise<Record<string, string | number | boolean>>;
+    /**
+     * Get missing required fields from partial configuration
+     */
+    static getMissingFields(partialConfig: Record<string, string | number | boolean | undefined>): string[];
+    /**
+     * Create inquirer questions for missing fields
+     */
+    private static createQuestions;
+    /**
+     * Validate answers after prompting
+     */
+    private static validateAnswers;
+    /**
+     * Validate Benchling tenant format
+     */
+    static validateTenant(value: string): boolean | string;
+    /**
+     * Validate Benchling client ID format
+     */
+    static validateClientId(value: string): boolean | string;
+    /**
+     * Validate Benchling client secret format
+     */
+    static validateClientSecret(value: string): boolean | string;
+    /**
+     * Validate Benchling app definition ID format
+     */
+    static validateAppDefinitionId(value: string): boolean | string;
+}
+//# sourceMappingURL=configuration-wizard.d.ts.map

package/dist/lib/configuration-wizard.d.ts.map

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package/dist/lib/configuration-wizard.js

@@ -0,0 +1,193 @@
+"use strict";
+var __importDefault = (this && this.__importDefault) || function (mod) {
+    return (mod && mod.__esModule) ? mod : { "default": mod };
+};
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.ConfigurationWizard = void 0;
+const inquirer_1 = __importDefault(require("inquirer"));
+/**
+ * Interactive configuration wizard for completing missing configuration details
+ */
+class ConfigurationWizard {
+    /**
+     * Run the configuration wizard
+     */
+    static async run(options) {
+        const { partialConfig = {} } = options;
+        try {
+            // Identify missing required fields
+            const missingFields = ConfigurationWizard.getMissingFields(partialConfig);
+            // If no fields are missing, return the partial config
+            if (missingFields.length === 0) {
+                return partialConfig;
+            }
+            // Create prompt questions for missing fields
+            const questions = ConfigurationWizard.createQuestions(missingFields);
+            // Prompt the user for missing fields
+            const answers = await inquirer_1.default.prompt(questions);
+            // Validate the answers
+            ConfigurationWizard.validateAnswers(answers);
+            // Merge answers with partial config
+            const completeConfig = { ...partialConfig };
+            // Add non-empty answers
+            for (const [key, value] of Object.entries(answers)) {
+                if (value && typeof value === "string" && value.trim() !== "") {
+                    completeConfig[key] = value;
+                }
+            }
+            return completeConfig;
+        }
+        catch (error) {
+            if (error instanceof Error && error.message === "User cancelled") {
+                throw new Error("Configuration wizard cancelled");
+            }
+            throw error;
+        }
+    }
+    /**
+     * Get missing required fields from partial configuration
+     */
+    static getMissingFields(partialConfig) {
+        const missingFields = [];
+        for (const field of ConfigurationWizard.REQUIRED_FIELDS) {
+            if (!partialConfig[field.name] || partialConfig[field.name] === "") {
+                missingFields.push(field.name);
+            }
+        }
+        return missingFields;
+    }
+    /**
+     * Create inquirer questions for missing fields
+     */
+    // eslint-disable-next-line @typescript-eslint/no-explicit-any
+    static createQuestions(missingFields) {
+        // eslint-disable-next-line @typescript-eslint/no-explicit-any
+        const questions = [];
+        // Add questions for missing required fields
+        for (const field of ConfigurationWizard.REQUIRED_FIELDS) {
+            if (missingFields.includes(field.name)) {
+                questions.push({
+                    type: field.type,
+                    name: field.name,
+                    message: field.message,
+                    validate: field.validate ? (input) => {
+                        const result = field.validate(input);
+                        return result === true ? true : result;
+                    } : undefined,
+                });
+            }
+        }
+        // Add optional fields
+        for (const field of ConfigurationWizard.OPTIONAL_FIELDS) {
+            questions.push({
+                type: field.type,
+                name: field.name,
+                message: field.message,
+            });
+        }
+        return questions;
+    }
+    /**
+     * Validate answers after prompting
+     */
+    static validateAnswers(answers) {
+        // Check for empty tenant
+        if (answers.benchlingTenant !== undefined &&
+            (answers.benchlingTenant === "" || answers.benchlingTenant.trim() === "")) {
+            throw new Error("Benchling tenant cannot be empty");
+        }
+        // Check for empty client ID
+        if (answers.benchlingClientId !== undefined && answers.benchlingClientId === "") {
+            throw new Error("Benchling client ID cannot be empty");
+        }
+        // Check for empty client secret
+        if (answers.benchlingClientSecret !== undefined && answers.benchlingClientSecret === "") {
+            throw new Error("Benchling client secret cannot be empty");
+        }
+        // Check for empty app definition ID
+        if (answers.benchlingAppDefinitionId !== undefined && answers.benchlingAppDefinitionId === "") {
+            throw new Error("Benchling app definition ID cannot be empty");
+        }
+    }
+    /**
+     * Validate Benchling tenant format
+     */
+    static validateTenant(value) {
+        if (!value || value.trim() === "") {
+            return "Benchling tenant cannot be empty";
+        }
+        return true;
+    }
+    /**
+     * Validate Benchling client ID format
+     */
+    static validateClientId(value) {
+        if (!value || value.trim() === "") {
+            return "Client ID cannot be empty";
+        }
+        return true;
+    }
+    /**
+     * Validate Benchling client secret format
+     */
+    static validateClientSecret(value) {
+        if (!value || value.trim() === "") {
+            return "Client secret cannot be empty";
+        }
+        if (value.length < 6) {
+            return "Client secret must be at least 6 characters";
+        }
+        return true;
+    }
+    /**
+     * Validate Benchling app definition ID format
+     */
+    static validateAppDefinitionId(value) {
+        if (!value || value.trim() === "") {
+            return "App definition ID cannot be empty";
+        }
+        return true;
+    }
+}
+exports.ConfigurationWizard = ConfigurationWizard;
+/**
+ * Required configuration fields
+ */
+ConfigurationWizard.REQUIRED_FIELDS = [
+    {
+        name: "benchlingTenant",
+        message: "Enter your Benchling tenant name (e.g., 'acme' for acme.benchling.com):",
+        type: "input",
+        validate: ConfigurationWizard.validateTenant,
+    },
+    {
+        name: "benchlingClientId",
+        message: "Enter your Benchling OAuth client ID:",
+        type: "input",
+        validate: ConfigurationWizard.validateClientId,
+    },
+    {
+        name: "benchlingClientSecret",
+        message: "Enter your Benchling OAuth client secret:",
+        type: "password",
+        validate: ConfigurationWizard.validateClientSecret,
+    },
+    {
+        name: "benchlingAppDefinitionId",
+        message: "Enter your Benchling app definition ID:",
+        type: "input",
+        validate: ConfigurationWizard.validateAppDefinitionId,
+    },
+];
+/**
+ * Optional configuration fields
+ */
+ConfigurationWizard.OPTIONAL_FIELDS = [
+    {
+        name: "benchlingTestEntry",
+        message: "Enter a Benchling test entry ID (optional, press Enter to skip):",
+        type: "input",
+        optional: true,
+    },
+];
+//# sourceMappingURL=configuration-wizard.js.map

package/dist/lib/configuration-wizard.js.map

@@ -0,0 +1 @@
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package/dist/lib/quilt-config-resolver.d.ts

@@ -0,0 +1,53 @@
+/**
+ * Quilt Configuration Resolver
+ *
+ * Automatically infers Quilt configuration from the quilt3 CLI.
+ * Extracts catalog URL, S3 bucket, and region information.
+ *
+ * @module quilt-config-resolver
+ */
+/**
+ * Quilt configuration structure
+ */
+export interface QuiltConfig {
+    catalogUrl?: string;
+    userBucket?: string;
+    defaultRegion?: string;
+}
+/**
+ * Quilt Configuration Resolver
+ *
+ * Resolves Quilt configuration from the quilt3 CLI or user overrides.
+ */
+export declare class QuiltConfigResolver {
+    /**
+     * Resolves Quilt configuration with optional manual overrides
+     *
+     * @param manualConfig - Optional manual configuration overrides
+     * @returns Resolved Quilt configuration
+     */
+    static resolve(manualConfig?: Partial<QuiltConfig>): Promise<QuiltConfig>;
+    /**
+     * Resolves configuration from quilt3 CLI
+     *
+     * @returns Resolved Quilt configuration
+     * @throws {Error} If quilt3 is not installed or configured
+     */
+    resolveFromQuilt3(): Promise<QuiltConfig>;
+    /**
+     * Resolves configuration using a custom command
+     *
+     * @param command - Command to execute
+     * @returns Resolved Quilt configuration
+     * @throws {Error} If command fails
+     */
+    resolveWithCommand(command: string): Promise<QuiltConfig>;
+    /**
+     * Parses quilt3 config output
+     *
+     * @param output - Raw output from quilt3 config command
+     * @returns Parsed Quilt configuration
+     */
+    parseQuilt3Config(output: string): QuiltConfig;
+}
+//# sourceMappingURL=quilt-config-resolver.d.ts.map