@quiltdata/benchling-webhook 0.5.1 → 0.5.4-20251031T221509Z

package/dist/lib/utils/stack-inference.js

@@ -38,13 +38,10 @@ var __importStar = (this && this.__importStar) || (function () {
 })();
 Object.defineProperty(exports, "__esModule", { value: true });
 exports.fetchJson = fetchJson;
-exports.extractBucketName = extractBucketName;
 exports.findStackByResource = findStackByResource;
-exports.searchStacksByPattern = searchStacksByPattern;
 exports.getStackDetails = getStackDetails;
 exports.getAwsAccountId = getAwsAccountId;
 exports.extractApiGatewayId = extractApiGatewayId;
-exports.inferStackPrefix = inferStackPrefix;
 exports.findStack = findStack;
 exports.buildInferredConfig = buildInferredConfig;
 exports.inferStackConfig = inferStackConfig;
@@ -87,15 +84,6 @@ async function fetchJson(url) {
             .on("error", reject);
     });
 }
-/**
- * Extract bucket name from S3 ARN or bucket name string
- */
-function extractBucketName(bucketString) {
-    if (bucketString.startsWith("arn:aws:s3:::")) {
-        return bucketString.replace("arn:aws:s3:::", "").split("/")[0];
-    }
-    return bucketString.split("/")[0];
-}
 /**
  * Try to find CloudFormation stack by searching for resource
  */
@@ -109,18 +97,6 @@ function findStackByResource(region, resourceId) {
         return null;
     }
 }
-/**
- * Search for stacks by name pattern
- */
-function searchStacksByPattern(region, pattern) {
-    try {
-        const result = (0, child_process_1.execSync)(`aws cloudformation list-stacks --region ${region} --stack-status-filter CREATE_COMPLETE UPDATE_COMPLETE UPDATE_ROLLBACK_COMPLETE --query "StackSummaries[?contains(StackName, '${pattern}')].StackName" --output json`, { encoding: "utf-8" });
-        return JSON.parse(result);
-    }
-    catch {
-        return [];
-    }
-}
 /**
  * Get stack outputs and parameters
  */
@@ -160,26 +136,11 @@ function extractApiGatewayId(endpoint) {
     return match ? match[1] : null;
 }
 /**
- * Extract stack name prefix from bucket names
+ * Find CloudFormation stack using API Gateway ID
  */
-function inferStackPrefix(analyticsBucket, serviceBucket) {
-    const patterns = [analyticsBucket, serviceBucket]
-        .filter(Boolean)
-        .map((bucket) => {
-        const parts = bucket.split("-");
-        if (parts.length >= 3) {
-            return parts.slice(0, 2).join("-");
-        }
-        return parts[0];
-    });
-    return patterns[0] || "quilt";
-}
-/**
- * Find CloudFormation stack using multiple search strategies
- */
-function findStack(region, apiGatewayId, analyticsBucket, serviceBucket, stackPrefix, verbose = true) {
+function findStack(region, apiGatewayId, verbose = true) {
     let stackName = null;
-    // Method 1: Search by API Gateway ID
+    // Search by API Gateway ID
     if (apiGatewayId) {
         if (verbose)
             console.log(`Searching by API Gateway ID: ${apiGatewayId}...`);
@@ -188,49 +149,6 @@ function findStack(region, apiGatewayId, analyticsBucket, serviceBucket, stackPr
             console.log(`✓ Found stack by API Gateway: ${stackName}`);
         }
     }
-    // Method 2: Search by Analytics Bucket
-    if (!stackName && analyticsBucket) {
-        if (verbose)
-            console.log(`Searching by Analytics Bucket: ${analyticsBucket}...`);
-        stackName = findStackByResource(region, analyticsBucket);
-        if (stackName && verbose) {
-            console.log(`✓ Found stack by Analytics Bucket: ${stackName}`);
-        }
-    }
-    // Method 3: Search by Service Bucket
-    if (!stackName && serviceBucket) {
-        if (verbose)
-            console.log(`Searching by Service Bucket: ${serviceBucket}...`);
-        stackName = findStackByResource(region, serviceBucket);
-        if (stackName && verbose) {
-            console.log(`✓ Found stack by Service Bucket: ${stackName}`);
-        }
-    }
-    // Method 4: Search by name pattern
-    if (!stackName && stackPrefix) {
-        if (verbose)
-            console.log(`Searching by stack name pattern: *${stackPrefix}*...`);
-        const stacks = searchStacksByPattern(region, stackPrefix);
-        if (stacks.length > 0) {
-            if (verbose) {
-                console.log(`✓ Found ${stacks.length} potential stack(s):`);
-                stacks.forEach((name, i) => console.log(`  ${i + 1}. ${name}`));
-            }
-            if (stacks.length === 1) {
-                stackName = stacks[0];
-                if (verbose)
-                    console.log(`  Using: ${stackName}`);
-            }
-            else {
-                if (verbose) {
-                    console.log("");
-                    console.log("⚠️  Multiple stacks found. Using first match: " + stacks[0]);
-                    console.log("   If this is incorrect, manually verify the stack name.");
-                }
-                stackName = stacks[0];
-            }
-        }
-    }
     return stackName;
 }
 /**
@@ -251,18 +169,8 @@ function buildInferredConfig(config, stackName, stackDetails, region, accountId,
     if (catalog) {
         vars.QUILT_CATALOG = catalog;
     }
-    // Try to infer bucket and database from stack or config
-    const serviceBucket = extractBucketName(config.serviceBucket);
-    // Find data bucket from stack outputs or use service bucket as fallback
-    const bucketOutput = stackDetails.outputs.find((o) => o.OutputKey === "Bucket" || o.OutputKey === "DataBucket");
-    const dataBucket = bucketOutput?.OutputValue || serviceBucket;
-    if (dataBucket) {
-        vars.QUILT_USER_BUCKET = `${dataBucket} # Verify this is YOUR data bucket`;
-    }
     // Try to find database name from stack
-    const databaseOutput = stackDetails.outputs.find((o) => o.OutputKey === "Database" ||
-        o.OutputKey === "AthenaDatabase" ||
-        o.OutputKey === "UserAthenaDatabase");
+    const databaseOutput = stackDetails.outputs.find((o) => o.OutputKey === "UserAthenaDatabaseName");
     if (databaseOutput) {
         vars.QUILT_DATABASE = databaseOutput.OutputValue;
     }
@@ -271,32 +179,10 @@ function buildInferredConfig(config, stackName, stackDetails, region, accountId,
         const dbGuess = catalog.replace(/[.-]/g, "_") + "_db";
         vars.QUILT_DATABASE = `${dbGuess} # VERIFY THIS - inferred from catalog name`;
     }
-    // SQS Queue
-    const queueOutput = stackDetails.outputs.find((o) => o.OutputKey === "PackagerQueue" || o.OutputKey.includes("Queue"));
-    if (queueOutput) {
-        const queueValue = queueOutput.OutputValue;
-        // Parse queue name from ARN or URL
-        let queueName;
-        if (queueValue.startsWith("arn:aws:sqs:")) {
-            // ARN format: arn:aws:sqs:region:account:queue-name
-            queueName = queueValue.split(":").pop();
-        }
-        else if (queueValue.includes("sqs.")) {
-            // URL format: https://sqs.region.amazonaws.com/account/queue-name
-            queueName = queueValue.split("/").pop();
-        }
-        else {
-            // Assume it's just the queue name
-            queueName = queueValue;
-        }
-        vars.QUEUE_NAME = queueName;
-        // Build SQS URL
-        if (accountId && region && queueName) {
-            vars.SQS_QUEUE_URL = `https://sqs.${region}.amazonaws.com/${accountId}/${queueName}`;
-        }
-    }
-    else if (stackName) {
-        vars.QUEUE_NAME = `${stackName}-PackagerQueue-XXXXX # VERIFY THIS - not found in outputs`;
+    // SQS Queue ARN - this is what the application actually uses
+    const queueArnOutput = stackDetails.outputs.find((o) => o.OutputKey === "PackagerQueueArn");
+    if (queueArnOutput) {
+        vars.QUEUE_ARN = queueArnOutput.OutputValue;
     }
     // Additional useful info
     if (stackName) {
@@ -347,31 +233,24 @@ async function inferStackConfig(catalogUrl, verbose = true) {
     if (verbose) {
         console.log("✓ Successfully fetched config.json");
         console.log("");
-        console.log("Configuration Summary:");
+        console.log("Catalog Configuration:");
         console.log("=".repeat(80));
         console.log(`Region:           ${config.region}`);
-        console.log(`API Gateway:      ${config.apiGatewayEndpoint}`);
-        console.log(`Analytics Bucket: ${config.analyticsBucket}`);
-        console.log(`Service Bucket:   ${config.serviceBucket}`);
-        console.log(`Stack Version:    ${config.stackVersion}`);
+        console.log(`Stack Version:    ${config.stackVersion || "unknown"}`);
         console.log("=".repeat(80));
         console.log("");
     }
     // Extract identifiable resources
     const region = config.region;
     const apiGatewayId = extractApiGatewayId(config.apiGatewayEndpoint);
-    const analyticsBucket = extractBucketName(config.analyticsBucket);
-    const serviceBucket = extractBucketName(config.serviceBucket);
-    const stackPrefix = inferStackPrefix(analyticsBucket, serviceBucket);
     if (verbose) {
         console.log("Searching for CloudFormation stack...");
         console.log(`  Region: ${region}`);
         console.log(`  API Gateway ID: ${apiGatewayId || "not found"}`);
-        console.log(`  Inferred stack prefix: ${stackPrefix}`);
         console.log("");
     }
     // Try to find the stack
-    const stackName = findStack(region, apiGatewayId, analyticsBucket, serviceBucket, stackPrefix, verbose);
+    const stackName = findStack(region, apiGatewayId, verbose);
     if (verbose) {
         console.log("");
         if (!stackName) {
@@ -400,6 +279,28 @@ async function inferStackConfig(catalogUrl, verbose = true) {
     }
     // Build inferred environment variables
     const inferredVars = buildInferredConfig(config, stackName, stackDetails, region, accountId, catalogUrl.replace(/\/config\.json$/, ""));
+    // Display inferred values
+    if (verbose) {
+        console.log("Inferred Stack Parameters:");
+        console.log("=".repeat(80));
+        if (inferredVars.QUILT_CATALOG) {
+            console.log(`Catalog:          ${inferredVars.QUILT_CATALOG}`);
+        }
+        if (inferredVars.QUILT_DATABASE) {
+            console.log(`Database:         ${inferredVars.QUILT_DATABASE}`);
+        }
+        if (inferredVars.QUEUE_ARN) {
+            console.log(`Queue ARN:        ${inferredVars.QUEUE_ARN}`);
+        }
+        if (inferredVars.CDK_DEFAULT_ACCOUNT) {
+            console.log(`AWS Account:      ${inferredVars.CDK_DEFAULT_ACCOUNT}`);
+        }
+        if (inferredVars.CDK_DEFAULT_REGION) {
+            console.log(`AWS Region:       ${inferredVars.CDK_DEFAULT_REGION}`);
+        }
+        console.log("=".repeat(80));
+        console.log("");
+    }
     return {
         config,
         stackName,

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package/dist/package.json

@@ -1,6 +1,6 @@
 {
     "name": "@quiltdata/benchling-webhook",
-    "version": "0.5.1",
+    "version": "0.5.4-20251031T221509Z",
     "description": "AWS CDK deployment for Benchling webhook processing using Fargate - Deploy directly with npx",
     "main": "dist/lib/index.js",
     "types": "dist/lib/index.d.ts",
@@ -15,8 +15,13 @@
     },
     "scripts": {
         "clean": "rm -rf cdk.out */{*.js,*.d.ts}",
-        "test": "NODE_ENV=test TMPDIR=./.tmp node --max-old-space-size=4096 ./node_modules/.bin/jest",
-        "cdk": "npm run test && npx cdk deploy --require-approval never",
+        "test": "npm run typecheck && npm run test:ts && npm run test:python",
+        "test-ci": "npm run typecheck && npm run test:ts",
+        "typecheck": "tsc --noEmit",
+        "test:ts": "NODE_ENV=test node --max-old-space-size=4096 ./node_modules/.bin/jest",
+        "test:python": "make -C docker test-unit",
+        "cdk": "npm run test && npm run cli -- --yes",
+        "cdk:dev": "node bin/cdk-dev.js",
         "lint": "eslint . --ext .ts --fix",
         "build": "tsc",
         "prebuild": "rm -rf dist",
@@ -61,7 +66,7 @@
         "@types/node": "^24.0.0",
         "@typescript-eslint/eslint-plugin": "^8.26.1",
         "@typescript-eslint/parser": "^8.26.1",
-        "aws-cdk": "2.1031.0",
+        "aws-cdk": "2.1031.1",
         "dotenv": "^17.2.3",
         "esbuild": "0.25.11",
         "eslint": "^9.22.0",

package/env.template

@@ -59,8 +59,7 @@ BENCHLING_TEST_ENTRY=etr_123456789
 #
 # - CDK_DEFAULT_ACCOUNT    (from AWS STS)
 # - CDK_DEFAULT_REGION     (from catalog config)
-# - QUEUE_NAME             (from Quilt stack outputs)
-# - SQS_QUEUE_URL          (from Quilt stack outputs)
+# - QUEUE_ARN              (from Quilt stack outputs)
 # - QUILT_DATABASE         (from Quilt stack outputs)
 #
 # You do NOT need to set these unless you want to override the inferred values.

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@quiltdata/benchling-webhook",
-  "version": "0.5.1",
+  "version": "0.5.4-20251031T221509Z",
   "description": "AWS CDK deployment for Benchling webhook processing using Fargate - Deploy directly with npx",
   "main": "dist/lib/index.js",
   "types": "dist/lib/index.d.ts",
@@ -15,8 +15,13 @@
   },
   "scripts": {
     "clean": "rm -rf cdk.out */{*.js,*.d.ts}",
-    "test": "NODE_ENV=test TMPDIR=./.tmp node --max-old-space-size=4096 ./node_modules/.bin/jest",
-    "cdk": "npm run test && npx cdk deploy --require-approval never",
+    "test": "npm run typecheck && npm run test:ts && npm run test:python",
+    "test-ci": "npm run typecheck && npm run test:ts",
+    "typecheck": "tsc --noEmit",
+    "test:ts": "NODE_ENV=test node --max-old-space-size=4096 ./node_modules/.bin/jest",
+    "test:python": "make -C docker test-unit",
+    "cdk": "npm run test && npm run cli -- --yes",
+    "cdk:dev": "node bin/cdk-dev.js",
     "lint": "eslint . --ext .ts --fix",
     "build": "tsc",
     "prebuild": "rm -rf dist",
@@ -61,7 +66,7 @@
     "@types/node": "^24.0.0",
     "@typescript-eslint/eslint-plugin": "^8.26.1",
     "@typescript-eslint/parser": "^8.26.1",
-    "aws-cdk": "2.1031.0",
+    "aws-cdk": "2.1031.1",
     "dotenv": "^17.2.3",
     "esbuild": "0.25.11",
     "eslint": "^9.22.0",