@quiltdata/benchling-webhook 0.4.13

package/lib/index.ts

@@ -0,0 +1,31 @@
+/**
+ * Benchling Webhook Integration for Quilt
+ *
+ * This module exports CDK constructs for deploying a Benchling webhook integration
+ * that creates Quilt packages from Benchling lab notebook entries.
+ *
+ * @example Basic usage
+ * ```typescript
+ * import * as cdk from 'aws-cdk-lib';
+ * import { BenchlingWebhookStack } from 'quilt-benchling-webhook';
+ *
+ * const app = new cdk.App();
+ * new BenchlingWebhookStack(app, 'MyBenchlingWebhook', {
+ *   env: { account: '123456789012', region: 'us-east-1' },
+ *   bucketName: 'my-data-bucket',
+ *   queueName: 'my-packager-queue',
+ *   benchlingClientId: process.env.BENCHLING_CLIENT_ID!,
+ *   benchlingClientSecret: process.env.BENCHLING_CLIENT_SECRET!,
+ *   benchlingTenant: 'my-org',
+ *   quiltCatalog: 'my-catalog.quiltdata.com',
+ *   quiltDatabase: 'my_athena_db',
+ * });
+ * ```
+ *
+ * @module quilt-benchling-webhook
+ */
+
+export { BenchlingWebhookStack, type BenchlingWebhookStackProps } from './benchling-webhook-stack';
+export { FargateService } from './fargate-service';
+export { AlbApiGateway } from './alb-api-gateway';
+export { EcrRepository } from './ecr-repository';

package/lib/oauth-tester.json

@@ -0,0 +1,35 @@
+{
+  "Comment": "OAuth 2.0 with EventBridge Connection in Step Functions",
+  "StartAt": "RequestAccessToken",
+  "States": {
+    "RequestAccessToken": {
+      "Type": "Task",
+      "Resource": "arn:aws:states:::http:invoke",
+      "Parameters": {
+        "Method": "POST",
+        "ApiEndpoint": "https://quilt-dtt.benchling.com/api/v2/token",
+        "Authentication": {
+          "ConnectionArn": "arn:aws:events:us-east-1:123456789012:connection/BenchlingOAuthConnection"
+        }
+      },
+      "ResultSelector": {
+        "access_token": "$.Body.access_token"
+      },
+      "ResultPath": "$.auth",
+      "Next": "CallListEntries"
+    },
+    "CallListEntries": {
+      "Type": "Task",
+      "Resource": "arn:aws:states:::http:invoke",
+      "Parameters": {
+        "Method": "GET",
+        "ApiEndpoint": "https://quilt-dtt.benchling.com/api/v2/entries",
+        "Headers": {
+          "Authorization.$": "States.Format('Bearer {}', $.auth.access_token)",
+          "Content-Type": "application/json"
+        }
+      },
+      "End": true
+    }
+  }
+}

package/package.json

@@ -0,0 +1,79 @@
+{
+  "name": "@quiltdata/benchling-webhook",
+  "version": "0.4.13",
+  "description": "AWS CDK deployment for Benchling webhook processing using Fargate",
+  "main": "lib/index.ts",
+  "bin": {
+    "benchling-webhook": "bin/benchling-webhook.ts"
+  },
+  "scripts": {
+    "sync-version": "node bin/sync-version.js",
+    "clean": "rm -rf cdk.out */{*.js,*.d.ts}",
+    "test": "NODE_ENV=test TMPDIR=./.tmp node --max-old-space-size=4096 ./node_modules/.bin/jest",
+    "cdk": "npm run test && npx cdk deploy --require-approval never",
+    "lint": "eslint . --ext .ts --fix",
+    "build": "tsc --noEmit",
+    "watch": "tsc --noEmit -w",
+    "synth": "npx cdk synth",
+    "diff": "npx cdk diff",
+    "logs": "node bin/check-logs.js",
+    "event": "node bin/send-event.js",
+    "check": "npm run cdk && npm run event && sleep 45 && npm run logs",
+    "get-env": "node bin/get-env.js",
+    "dev": "npm run build && npm run docker:test && npm run lint",
+    "docker:test": "make -C docker test",
+    "docker-push": "make -C docker push-local",
+    "docker-check": "make -C docker docker-validate",
+    "release": "node bin/release.js",
+    "release:dev": "node bin/release.js dev",
+    "version:major": "node bin/version.js major",
+    "version:minor": "node bin/version.js minor",
+    "version:patch": "node bin/version.js patch",
+    "version:dev": "node bin/version.js dev",
+    "publish:manual": "node bin/publish-manual.js"
+  },
+  "keywords": [
+    "benchling",
+    "webhook",
+    "aws",
+    "cdk",
+    "fargate",
+    "docker",
+    "quilt"
+  ],
+  "author": "Quilt Data",
+  "license": "Apache-2.0",
+  "repository": {
+    "type": "git",
+    "url": "https://github.com/quiltdata/benchling-webhook.git"
+  },
+  "devDependencies": {
+    "@eslint/js": "^9.22.0",
+    "@types/adm-zip": "^0.5.7",
+    "@types/aws-lambda": "^8.10.156",
+    "@types/jest": "^30.0.0",
+    "@types/node": "^24.0.0",
+    "@typescript-eslint/eslint-plugin": "^8.26.1",
+    "@typescript-eslint/parser": "^8.26.1",
+    "aws-cdk": "2.1031.0",
+    "dotenv": "^17.2.3",
+    "esbuild": "0.25.11",
+    "eslint": "^9.22.0",
+    "globals": "^16.0.0",
+    "jest": "^30.0.0",
+    "ts-jest": "^29.2.5",
+    "ts-node": "^10.9.2",
+    "typescript": "~5.9.0"
+  },
+  "dependencies": {
+    "@aws-sdk/client-s3": "^3.758.0",
+    "adm-zip": "^0.5.10",
+    "aws-cdk-lib": "2.221.0",
+    "aws-sdk": "^2.1574.0",
+    "constructs": "^10.0.0"
+  },
+  "engines": {
+    "node": ">=18.0.0",
+    "npm": ">=9.0.0"
+  }
+}

package/tsconfig.json

@@ -0,0 +1,34 @@
+{
+  "compilerOptions": {
+    "target": "ES2020",
+    "module": "node20",
+    "lib": [
+      "es2020",
+      "dom"
+    ],
+    "declaration": true,
+    "strict": true,
+    "noImplicitAny": true,
+    "strictNullChecks": true,
+    "noImplicitThis": true,
+    "alwaysStrict": true,
+    "noUnusedLocals": false,
+    "noUnusedParameters": false,
+    "noImplicitReturns": true,
+    "noFallthroughCasesInSwitch": false,
+    "inlineSourceMap": true,
+    "inlineSources": true,
+    "experimentalDecorators": true,
+    "strictPropertyInitialization": false,
+    "esModuleInterop": true,
+    "resolveJsonModule": true,
+    "noEmit": true,
+    "typeRoots": [
+      "./node_modules/@types"
+    ]
+  },
+  "exclude": [
+    "node_modules",
+    "cdk.out"
+  ]
+}