@quiltdata/benchling-webhook 0.17.0 → 0.17.1-20260415T215352Z
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/lib/benchling-webhook-stack.d.ts.map +1 -1
- package/dist/lib/benchling-webhook-stack.js +19 -0
- package/dist/lib/benchling-webhook-stack.js.map +1 -1
- package/dist/lib/fargate-service.d.ts +1 -0
- package/dist/lib/fargate-service.d.ts.map +1 -1
- package/dist/lib/fargate-service.js +25 -0
- package/dist/lib/fargate-service.js.map +1 -1
- package/dist/package.json +1 -1
- package/package.json +1 -1
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"benchling-webhook-stack.d.ts","sourceRoot":"","sources":["../../lib/benchling-webhook-stack.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,GAAG,MAAM,aAAa,CAAC;AAOnC,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAIvC,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAC;AAGnD;;;;;;GAMG;AACH,MAAM,WAAW,0BAA2B,SAAQ,GAAG,CAAC,UAAU;IAC9D;;;OAGG;IACH,QAAQ,CAAC,MAAM,EAAE,WAAW,CAAC;CAChC;AAED,qBAAa,qBAAsB,SAAQ,GAAG,CAAC,KAAK;IAChD,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAiB;IAChD,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAsB;IAC1C,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAiB;IACrC,SAAgB,eAAe,EAAE,MAAM,CAAC;gBAGpC,KAAK,EAAE,SAAS,EAChB,EAAE,EAAE,MAAM,EACV,KAAK,EAAE,0BAA0B;
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1
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{"version":3,"file":"benchling-webhook-stack.d.ts","sourceRoot":"","sources":["../../lib/benchling-webhook-stack.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,GAAG,MAAM,aAAa,CAAC;AAOnC,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAIvC,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAC;AAGnD;;;;;;GAMG;AACH,MAAM,WAAW,0BAA2B,SAAQ,GAAG,CAAC,UAAU;IAC9D;;;OAGG;IACH,QAAQ,CAAC,MAAM,EAAE,WAAW,CAAC;CAChC;AAED,qBAAa,qBAAsB,SAAQ,GAAG,CAAC,KAAK;IAChD,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAiB;IAChD,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAsB;IAC1C,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAiB;IACrC,SAAgB,eAAe,EAAE,MAAM,CAAC;gBAGpC,KAAK,EAAE,SAAS,EAChB,EAAE,EAAE,MAAM,EACV,KAAK,EAAE,0BAA0B;CA4XxC"}
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@@ -250,6 +250,24 @@ class BenchlingWebhookStack extends cdk.Stack {
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maxReceiveCount: 5,
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},
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});
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// FIFO queue that serializes packaging work per entry_id. Replaces the
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// old daemon-thread fire-and-forget in execute_workflow_async, removing
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// the canvas_id race that the .canvas_id sidecar used to mask.
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// Visibility timeout exceeds the worst-case PDF-export poll
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// (60 attempts x 30s = 30 min) plus margin.
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const packagingRequestDlq = new sqs.Queue(this, "PackagingRequestDLQ", {
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fifo: true,
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retentionPeriod: cdk.Duration.days(14),
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});
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const packagingRequestQueue = new sqs.Queue(this, "PackagingRequestQueue", {
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fifo: true,
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contentBasedDeduplication: true,
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visibilityTimeout: cdk.Duration.minutes(40),
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deadLetterQueue: {
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queue: packagingRequestDlq,
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maxReceiveCount: 3,
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},
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});
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// Build Fargate Service props using new config structure
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this.fargateService = new fargate_service_1.FargateService(this, "FargateService", {
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vpc,
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@@ -270,6 +288,7 @@ class BenchlingWebhookStack extends cdk.Stack {
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bucketWritePolicyArn: config.quilt.bucketWritePolicyArn,
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athenaUserPolicyArn: config.quilt.athenaUserPolicyArn,
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packageEventQueue,
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+
packagingRequestQueue,
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// Legacy parameters
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benchlingSecret: benchlingSecretValue,
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packageBucket: packageBucketValue,
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@@ -1 +1 @@
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1
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-
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+
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@@ -30,6 +30,7 @@ export interface FargateServiceProps {
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30
30
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readonly bucketWritePolicyArn?: string;
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31
31
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readonly athenaUserPolicyArn?: string;
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32
32
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readonly packageEventQueue?: sqs.IQueue;
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33
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+
readonly packagingRequestQueue?: sqs.IQueue;
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33
34
|
readonly benchlingSecret: string;
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34
35
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readonly packageBucket: string;
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35
36
|
readonly quiltDatabase: string;
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@@ -1 +1 @@
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1
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-
{"version":3,"file":"fargate-service.d.ts","sourceRoot":"","sources":["../../lib/fargate-service.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,GAAG,MAAM,qBAAqB,CAAC;AAC3C,OAAO,KAAK,GAAG,MAAM,qBAAqB,CAAC;AAC3C,OAAO,KAAK,GAAG,MAAM,qBAAqB,CAAC;AAC3C,OAAO,KAAK,KAAK,MAAM,wCAAwC,CAAC;AAEhE,OAAO,KAAK,IAAI,MAAM,sBAAsB,CAAC;AAC7C,OAAO,KAAK,GAAG,MAAM,qBAAqB,CAAC;AAC3C,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AACvC,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAC;AAEnD;;;;;;;;;GASG;AACH,MAAM,WAAW,mBAAmB;IAChC,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC,IAAI,CAAC;IACvB,QAAQ,CAAC,MAAM,EAAE,WAAW,CAAC;IAC7B,QAAQ,CAAC,aAAa,EAAE,GAAG,CAAC,WAAW,CAAC;IACxC,QAAQ,CAAC,WAAW,EAAE,KAAK,CAAC,mBAAmB,CAAC;IAChD,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAC3B,QAAQ,CAAC,YAAY,CAAC,EAAE,MAAM,CAAC;IAI/B,QAAQ,CAAC,gBAAgB,EAAE,MAAM,CAAC;IAClC,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;IACpC,QAAQ,CAAC,YAAY,EAAE,MAAM,CAAC;IAI9B,QAAQ,CAAC,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAGtC,QAAQ,CAAC,oBAAoB,CAAC,EAAE,MAAM,CAAC;IACvC,QAAQ,CAAC,mBAAmB,CAAC,EAAE,MAAM,CAAC;IACtC,QAAQ,CAAC,iBAAiB,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC;
|
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1
|
+
{"version":3,"file":"fargate-service.d.ts","sourceRoot":"","sources":["../../lib/fargate-service.ts"],"names":[],"mappings":"AACA,OAAO,KAAK,GAAG,MAAM,qBAAqB,CAAC;AAC3C,OAAO,KAAK,GAAG,MAAM,qBAAqB,CAAC;AAC3C,OAAO,KAAK,GAAG,MAAM,qBAAqB,CAAC;AAC3C,OAAO,KAAK,KAAK,MAAM,wCAAwC,CAAC;AAEhE,OAAO,KAAK,IAAI,MAAM,sBAAsB,CAAC;AAC7C,OAAO,KAAK,GAAG,MAAM,qBAAqB,CAAC;AAC3C,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AACvC,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAC;AAEnD;;;;;;;;;GASG;AACH,MAAM,WAAW,mBAAmB;IAChC,QAAQ,CAAC,GAAG,EAAE,GAAG,CAAC,IAAI,CAAC;IACvB,QAAQ,CAAC,MAAM,EAAE,WAAW,CAAC;IAC7B,QAAQ,CAAC,aAAa,EAAE,GAAG,CAAC,WAAW,CAAC;IACxC,QAAQ,CAAC,WAAW,EAAE,KAAK,CAAC,mBAAmB,CAAC;IAChD,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;IAC3B,QAAQ,CAAC,YAAY,CAAC,EAAE,MAAM,CAAC;IAI/B,QAAQ,CAAC,gBAAgB,EAAE,MAAM,CAAC;IAClC,QAAQ,CAAC,kBAAkB,EAAE,MAAM,CAAC;IACpC,QAAQ,CAAC,YAAY,EAAE,MAAM,CAAC;IAI9B,QAAQ,CAAC,mBAAmB,CAAC,EAAE,MAAM,CAAC;IAGtC,QAAQ,CAAC,oBAAoB,CAAC,EAAE,MAAM,CAAC;IACvC,QAAQ,CAAC,mBAAmB,CAAC,EAAE,MAAM,CAAC;IACtC,QAAQ,CAAC,iBAAiB,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC;IACxC,QAAQ,CAAC,qBAAqB,CAAC,EAAE,GAAG,CAAC,MAAM,CAAC;IAG5C,QAAQ,CAAC,eAAe,EAAE,MAAM,CAAC;IACjC,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAC;IAC/B,QAAQ,CAAC,aAAa,EAAE,MAAM,CAAC;IAC/B,QAAQ,CAAC,QAAQ,CAAC,EAAE,MAAM,CAAC;CAC9B;AAED,qBAAa,cAAe,SAAQ,SAAS;IACzC,SAAgB,OAAO,EAAE,GAAG,CAAC,cAAc,CAAC;IAC5C,SAAgB,OAAO,EAAE,GAAG,CAAC,OAAO,CAAC;IACrC,SAAgB,QAAQ,EAAE,IAAI,CAAC,SAAS,CAAC;IACzC,SAAgB,aAAa,EAAE,GAAG,CAAC,cAAc,CAAC;IAElD;;;;;;;;;OASG;IACH,OAAO,CAAC,iBAAiB;gBAoBb,KAAK,EAAE,SAAS,EAAE,EAAE,EAAE,MAAM,EAAE,KAAK,EAAE,mBAAmB;CA4WvE"}
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@@ -241,6 +241,14 @@ class FargateService extends constructs_1.Construct {
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241
241
|
environmentVars.PACKAGE_EVENT_GRACEFUL_TIMEOUT = "30";
|
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242
242
|
props.packageEventQueue.grantConsumeMessages(taskRole);
|
|
243
243
|
}
|
|
244
|
+
if (props.packagingRequestQueue) {
|
|
245
|
+
environmentVars.PACKAGING_REQUEST_QUEUE_URL = props.packagingRequestQueue.queueUrl;
|
|
246
|
+
environmentVars.PACKAGING_REQUEST_CONCURRENCY = "5";
|
|
247
|
+
environmentVars.PACKAGING_REQUEST_GRACEFUL_TIMEOUT = "30";
|
|
248
|
+
// Webhook container produces, packaging-consumer container drains.
|
|
249
|
+
props.packagingRequestQueue.grantSendMessages(taskRole);
|
|
250
|
+
props.packagingRequestQueue.grantConsumeMessages(taskRole);
|
|
251
|
+
}
|
|
244
252
|
// Add container with configured environment
|
|
245
253
|
const container = taskDefinition.addContainer("BenchlingWebhookContainer", {
|
|
246
254
|
image: ecs.ContainerImage.fromEcrRepository(props.ecrRepository, props.imageTag || "latest"),
|
|
@@ -270,6 +278,23 @@ class FargateService extends constructs_1.Construct {
|
|
|
270
278
|
environment: environmentVars,
|
|
271
279
|
});
|
|
272
280
|
}
|
|
281
|
+
if (props.packagingRequestQueue) {
|
|
282
|
+
// Drains the FIFO packaging-request queue and runs
|
|
283
|
+
// EntryPackager.execute_workflow per message. FIFO + MessageGroupId
|
|
284
|
+
// serializes per-entry work; a single sidecar container processes
|
|
285
|
+
// up to PACKAGING_REQUEST_CONCURRENCY entries in parallel.
|
|
286
|
+
taskDefinition.addContainer("BenchlingPackagingConsumer", {
|
|
287
|
+
image: ecs.ContainerImage.fromEcrRepository(props.ecrRepository, props.imageTag || "latest"),
|
|
288
|
+
command: ["python", "-m", "src.packaging_consumer"],
|
|
289
|
+
essential: true,
|
|
290
|
+
stopTimeout: cdk.Duration.seconds(30),
|
|
291
|
+
logging: ecs.LogDriver.awsLogs({
|
|
292
|
+
streamPrefix: "benchling-packaging-consumer",
|
|
293
|
+
logGroup: this.logGroup,
|
|
294
|
+
}),
|
|
295
|
+
environment: environmentVars,
|
|
296
|
+
});
|
|
297
|
+
}
|
|
273
298
|
// Map container port
|
|
274
299
|
container.addPortMappings({
|
|
275
300
|
containerPort: 8080,
|
|
@@ -1 +1 @@
|
|
|
1
|
-
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|
|
1
|
+
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|
package/dist/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@quiltdata/benchling-webhook",
|
|
3
|
-
"version": "0.17.
|
|
3
|
+
"version": "0.17.1-20260415T215352Z",
|
|
4
4
|
"description": "AWS CDK deployment for Benchling webhook processing using Fargate - Deploy directly with npx",
|
|
5
5
|
"main": "dist/lib/index.js",
|
|
6
6
|
"types": "dist/lib/index.d.ts",
|
package/package.json
CHANGED
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
{
|
|
2
2
|
"name": "@quiltdata/benchling-webhook",
|
|
3
|
-
"version": "0.17.
|
|
3
|
+
"version": "0.17.1-20260415T215352Z",
|
|
4
4
|
"description": "AWS CDK deployment for Benchling webhook processing using Fargate - Deploy directly with npx",
|
|
5
5
|
"main": "dist/lib/index.js",
|
|
6
6
|
"types": "dist/lib/index.d.ts",
|