@quiltdata/benchling-webhook 0.11.0-20251227T023057Z → 0.11.0

package/dist/bin/commands/setup-wizard.js

@@ -1,22 +1,24 @@
 #!/usr/bin/env node
 "use strict";
 /**
- * Interactive Configuration Wizard (v0.10.0)
+ * Interactive Configuration Wizard (v0.8.0)
  *
- * Unified setup wizard that orchestrates:
+ * Phase-based modular setup wizard that orchestrates:
  * 1. Catalog discovery and confirmation
  * 2. Stack query for infrastructure details
- * 3. Context display and flow decision
- * 4. Parameter collection (only when needed)
- * 5. Execution (update secrets, enable/disable integration, deploy)
+ * 3. Parameter collection from user
+ * 4. Configuration validation
+ * 5. Deployment mode decision (integrated vs standalone)
+ * 6. Mode-specific setup (integrated or standalone)
  *
  * Architecture:
- * - Context first, then targeted questions
- * - Parameter collection is deferred until required
- * - Integrated and standalone paths share execution helpers
+ * - Each phase is a separate, testable module
+ * - Explicit data flow between phases via TypeScript types
+ * - Cannot skip phases or execute out of order
+ * - Integrated mode has explicit return (no deployment)
  *
  * @module commands/setup-wizard
- * @version 0.10.0
+ * @version 0.8.0
  */
 var __importDefault = (this && this.__importDefault) || function (mod) {
     return (mod && mod.__esModule) ? mod : { "default": mod };
@@ -34,13 +36,9 @@ const phase1_catalog_discovery_1 = require("../../lib/wizard/phase1-catalog-disc
 const phase2_stack_query_1 = require("../../lib/wizard/phase2-stack-query");
 const phase3_parameter_collection_1 = require("../../lib/wizard/phase3-parameter-collection");
 const phase4_validation_1 = require("../../lib/wizard/phase4-validation");
-const phase5_unified_flow_1 = require("../../lib/wizard/phase5-unified-flow");
-const profile_config_builder_1 = require("../../lib/wizard/profile-config-builder");
-const stack_waiter_1 = require("../../lib/wizard/stack-waiter");
-const sync_secrets_1 = require("./sync-secrets");
-const deploy_1 = require("./deploy");
-const config_1 = require("../../lib/types/config");
-const stack_parameter_update_1 = require("../../lib/utils/stack-parameter-update");
+const phase5_mode_decision_1 = require("../../lib/wizard/phase5-mode-decision");
+const phase6_integrated_mode_1 = require("../../lib/wizard/phase6-integrated-mode");
+const phase7_standalone_mode_1 = require("../../lib/wizard/phase7-standalone-mode");
 /**
  * Step titles for the wizard phases
  * This is the single source of truth for step numbering and titles
@@ -48,10 +46,11 @@ const stack_parameter_update_1 = require("../../lib/utils/stack-parameter-update
 const STEP_TITLES = {
     catalogDiscovery: "Quilt Catalog Discovery",
     stackQuery: "Quilt Stack Configuration",
-    flowDecision: "Context & Flow Selection",
-    parameterCollection: "Benchling Parameters",
+    parameterCollection: "Configuration Parameters",
     validation: "Validation",
-    execution: "Execution",
+    modeDecision: "Deployment Mode",
+    integratedMode: "Integrated Setup",
+    standaloneMode: "Standalone Setup",
 };
 /**
  * Gets the package version from package.json
@@ -184,362 +183,120 @@ async function runSetupWizard(options = {}) {
         throw new Error("Stack query failed");
     }
     // =========================================================================
-    // PHASE 3: CONTEXT + FLOW DECISION
+    // PHASE 3: PARAMETER COLLECTION
     // =========================================================================
-    printStepHeader(3, STEP_TITLES.flowDecision);
-    const flowDecision = await (0, phase5_unified_flow_1.runUnifiedFlowDecision)({
+    // Collect user inputs, using existing config and stack query results as defaults
+    printStepHeader(3, STEP_TITLES.parameterCollection);
+    const parameters = await (0, phase3_parameter_collection_1.runParameterCollection)({
         stackQuery,
         existingConfig,
-        configStorage: xdg,
-        profile,
         yes,
-        awsProfile,
+        profile,
+        benchlingTenant: options.benchlingTenant,
+        benchlingClientId: options.benchlingClientId,
+        benchlingClientSecret: options.benchlingClientSecret,
+        benchlingAppDefinitionId: options.benchlingAppDefinitionId,
+        userBucket: options.userBucket,
+        pkgPrefix: options.pkgPrefix,
+        pkgKey: options.pkgKey,
+        logLevel: options.logLevel,
+        webhookAllowList: options.webhookAllowList,
     });
-    if (flowDecision.action === "exit") {
-        console.log(chalk_1.default.green("✓ Exit without changes"));
-        if (existingConfig) {
-            return {
-                success: true,
-                profile,
-                config: existingConfig,
-                deploymentHandled: true,
-            };
-        }
-        process.exit(0);
-    }
-    const actionsRequiringParameters = new Set([
-        "update-integration-secret",
-        "enable-integration",
-        "deploy-standalone",
-        "update-standalone-redeploy",
-    ]);
-    let parameters = undefined;
-    const collectParameters = async () => {
-        printStepHeader(4, STEP_TITLES.parameterCollection);
-        parameters = await (0, phase3_parameter_collection_1.runParameterCollection)({
+    // =========================================================================
+    // PHASE 4: VALIDATION
+    // =========================================================================
+    // Validate all collected parameters BEFORE making mode decision
+    if (!skipValidation) {
+        printStepHeader(4, STEP_TITLES.validation);
+        const validation = await (0, phase4_validation_1.runValidation)({
             stackQuery,
-            existingConfig,
-            yes,
-            profile,
-            benchlingTenant: options.benchlingTenant,
-            benchlingClientId: options.benchlingClientId,
-            benchlingClientSecret: options.benchlingClientSecret,
-            benchlingAppDefinitionId: options.benchlingAppDefinitionId,
-            userBucket: options.userBucket,
-            pkgPrefix: options.pkgPrefix,
-            pkgKey: options.pkgKey,
-            logLevel: options.logLevel,
-            webhookAllowList: options.webhookAllowList,
+            parameters,
+            awsProfile,
         });
-        if (!skipValidation) {
-            printStepHeader(5, STEP_TITLES.validation);
-            const validation = await (0, phase4_validation_1.runValidation)({
-                stackQuery,
-                parameters,
-                awsProfile,
-            });
-            if (!validation.success) {
-                if (yes) {
-                    throw new Error(`Validation failed: ${validation.errors.join(", ")}`);
-                }
-                const { proceed } = await inquirer_1.default.prompt([
-                    {
-                        type: "confirm",
-                        name: "proceed",
-                        message: "Save configuration anyway?",
-                        default: false,
-                    },
-                ]);
-                if (!proceed) {
-                    throw new Error("Setup aborted by user");
-                }
+        if (!validation.success) {
+            if (yes) {
+                throw new Error(`Validation failed: ${validation.errors.join(", ")}`);
             }
-        }
-    };
-    if (actionsRequiringParameters.has(flowDecision.action)) {
-        await collectParameters();
-    }
-    const saveConfig = (config) => {
-        console.log(`Saving configuration to profile: ${profile}...\n`);
-        xdg.writeProfile(profile, config);
-        console.log(chalk_1.default.green(`✓ Configuration saved to: ~/.config/benchling-webhook/${profile}/config.json\n`));
-    };
-    const requireConfig = async (integratedStack) => {
-        try {
-            return (0, profile_config_builder_1.buildProfileConfigFromExisting)({
-                stackQuery,
-                existingConfig,
-                secretDetails: flowDecision.secretDetails,
-                catalogDns: catalogResult.catalogDns,
-                integratedStack,
-                benchlingSecretArn: flowDecision.benchlingSecretArn,
-            });
-        }
-        catch (_error) {
-            if (!parameters) {
-                await collectParameters();
-            }
-            return (0, profile_config_builder_1.buildProfileConfigFromParameters)({
-                stackQuery,
-                parameters: parameters,
-                catalogDns: catalogResult.catalogDns,
-                integratedStack,
-                benchlingSecretArn: flowDecision.benchlingSecretArn,
-            });
-        }
-    };
-    printStepHeader(6, STEP_TITLES.execution);
-    switch (flowDecision.action) {
-        case "update-integration-secret": {
-            const benchlingSecretArn = flowDecision.benchlingSecretArn;
-            if (!benchlingSecretArn) {
-                throw new Error("BenchlingSecret ARN not found for integrated update.");
-            }
-            const config = (0, profile_config_builder_1.buildProfileConfigFromParameters)({
-                stackQuery,
-                parameters: parameters,
-                catalogDns: catalogResult.catalogDns,
-                integratedStack: true,
-                benchlingSecretArn,
-            });
-            saveConfig(config);
-            await (0, sync_secrets_1.syncSecretsToAWS)({
-                profile,
-                awsProfile,
-                region: config.deployment.region,
-                force: true,
-                configStorage: xdg,
-            });
-            break;
-        }
-        case "review-only": {
-            const integratedStack = flowDecision.flow !== "standalone-existing";
-            const config = await requireConfig(integratedStack);
-            saveConfig(config);
-            break;
-        }
-        case "disable-integration": {
-            const confirmDisable = yes || (await inquirer_1.default.prompt([
-                {
-                    type: "confirm",
-                    name: "confirmDisable",
-                    message: "Stop webhook? (can re-enable later)",
-                    default: false,
-                },
-            ])).confirmDisable;
-            if (!confirmDisable) {
-                console.log(chalk_1.default.green("✓ Exit without changes"));
-                return {
-                    success: true,
-                    profile,
-                    config: existingConfig || (await requireConfig(true)),
-                    deploymentHandled: true,
-                };
-            }
-            const updateResult = await (0, stack_parameter_update_1.updateStackParameter)({
-                stackArn: stackQuery.stackArn,
-                region: stackQuery.region,
-                parameterKey: config_1.CFN_PARAMS.BENCHLING_WEBHOOK,
-                parameterValue: "Disabled",
-                awsProfile,
-            });
-            if (updateResult.success) {
-                console.log(chalk_1.default.green("✓ Stack update initiated"));
-                await (0, stack_waiter_1.pollStackStatus)({
-                    stackArn: stackQuery.stackArn,
-                    region: stackQuery.region,
-                    awsProfile,
-                });
-            }
-            else {
-                throw new Error(updateResult.error || "Failed to disable BenchlingIntegration");
-            }
-            const config = await requireConfig(true);
-            saveConfig(config);
-            break;
-        }
-        case "switch-standalone": {
-            const confirmSwitch = yes || (await inquirer_1.default.prompt([
+            const { proceed } = await inquirer_1.default.prompt([
                 {
                     type: "confirm",
-                    name: "confirmSwitch",
-                    message: "Create separate infrastructure? (~8-10 min)",
+                    name: "proceed",
+                    message: "Save configuration anyway?",
                     default: false,
                 },
-            ])).confirmSwitch;
-            if (!confirmSwitch) {
-                console.log(chalk_1.default.green("✓ Exit without changes"));
-                return {
-                    success: true,
-                    profile,
-                    config: existingConfig || (await requireConfig(true)),
-                    deploymentHandled: true,
-                };
-            }
-            const updateResult = await (0, stack_parameter_update_1.updateStackParameter)({
-                stackArn: stackQuery.stackArn,
-                region: stackQuery.region,
-                parameterKey: config_1.CFN_PARAMS.BENCHLING_WEBHOOK,
-                parameterValue: "Disabled",
-                awsProfile,
-            });
-            if (updateResult.success) {
-                console.log(chalk_1.default.green("✓ Stack update initiated"));
-                await (0, stack_waiter_1.pollStackStatus)({
-                    stackArn: stackQuery.stackArn,
-                    region: stackQuery.region,
-                    awsProfile,
-                });
-            }
-            else {
-                throw new Error(updateResult.error || "Failed to disable BenchlingIntegration");
-            }
-            const config = await requireConfig(false);
-            saveConfig(config);
-            await (0, sync_secrets_1.syncSecretsToAWS)({
-                profile,
-                awsProfile,
-                region: config.deployment.region,
-                force: true,
-                configStorage: xdg,
-            });
-            if (!setupOnly) {
-                await (0, deploy_1.deployCommand)({
-                    profile,
-                    stage: profile === "prod" ? "prod" : "dev",
-                    yes: true,
-                });
-            }
-            break;
-        }
-        case "enable-integration": {
-            const confirmEnable = yes || (await inquirer_1.default.prompt([
-                {
-                    type: "confirm",
-                    name: "confirmEnable",
-                    message: "Enable integration?",
-                    default: true,
-                },
-            ])).confirmEnable;
-            if (!confirmEnable) {
-                console.log(chalk_1.default.green("✓ Exit without changes"));
-                return {
-                    success: true,
-                    profile,
-                    config: existingConfig || (await requireConfig(true)),
-                    deploymentHandled: true,
-                };
-            }
-            const updateResult = await (0, stack_parameter_update_1.updateStackParameter)({
-                stackArn: stackQuery.stackArn,
-                region: stackQuery.region,
-                parameterKey: config_1.CFN_PARAMS.BENCHLING_WEBHOOK,
-                parameterValue: "Enabled",
-                awsProfile,
-            });
-            if (updateResult.success) {
-                console.log(chalk_1.default.green("✓ Stack update initiated"));
-                await (0, stack_waiter_1.pollStackStatus)({
-                    stackArn: stackQuery.stackArn,
-                    region: stackQuery.region,
-                    awsProfile,
-                });
+            ]);
+            if (!proceed) {
+                throw new Error("Setup aborted by user");
             }
-            else {
-                throw new Error(updateResult.error || "Failed to enable BenchlingIntegration");
-            }
-            const benchlingSecretArn = await (0, stack_waiter_1.waitForBenchlingSecretArn)({
-                stackArn: stackQuery.stackArn,
-                region: stackQuery.region,
-                awsProfile,
-            });
-            const config = (0, profile_config_builder_1.buildProfileConfigFromParameters)({
-                stackQuery,
-                parameters: parameters,
-                catalogDns: catalogResult.catalogDns,
-                integratedStack: true,
-                benchlingSecretArn,
-            });
-            saveConfig(config);
-            await (0, sync_secrets_1.syncSecretsToAWS)({
-                profile,
-                awsProfile,
-                region: config.deployment.region,
-                force: true,
-                configStorage: xdg,
-            });
-            break;
         }
-        case "deploy-standalone": {
-            const config = (0, profile_config_builder_1.buildProfileConfigFromParameters)({
-                stackQuery,
-                parameters: parameters,
-                catalogDns: catalogResult.catalogDns,
-                integratedStack: false,
-            });
-            saveConfig(config);
-            await (0, sync_secrets_1.syncSecretsToAWS)({
-                profile,
-                awsProfile,
-                region: config.deployment.region,
-                force: true,
-                configStorage: xdg,
-            });
-            if (!setupOnly) {
-                await (0, deploy_1.deployCommand)({
-                    profile,
-                    stage: profile === "prod" ? "prod" : "dev",
-                    yes: true,
-                });
-            }
-            break;
-        }
-        case "update-standalone-redeploy": {
-            const config = (0, profile_config_builder_1.buildProfileConfigFromParameters)({
-                stackQuery,
-                parameters: parameters,
-                catalogDns: catalogResult.catalogDns,
-                integratedStack: false,
-            });
-            saveConfig(config);
-            if (!setupOnly) {
-                await (0, deploy_1.deployCommand)({
-                    profile,
-                    stage: profile === "prod" ? "prod" : "dev",
-                    yes: true,
-                });
-            }
-            await (0, sync_secrets_1.syncSecretsToAWS)({
-                profile,
-                awsProfile,
-                region: config.deployment.region,
-                force: true,
-                configStorage: xdg,
-            });
-            break;
-        }
-        case "update-standalone-secret": {
-            const config = await requireConfig(false);
-            saveConfig(config);
-            await (0, sync_secrets_1.syncSecretsToAWS)({
-                profile,
-                awsProfile,
-                region: config.deployment.region,
-                force: true,
-                configStorage: xdg,
-            });
-            break;
-        }
-        default:
-            break;
     }
-    const finalConfig = xdg.readProfile(profile);
-    return {
-        success: true,
-        profile,
-        config: finalConfig,
-        deploymentHandled: true,
-    };
+    // =========================================================================
+    // PHASE 5: MODE DECISION
+    // =========================================================================
+    // Decide between integrated mode (use existing BenchlingSecret) or
+    // standalone mode (create new dedicated secret)
+    printStepHeader(5, STEP_TITLES.modeDecision);
+    const modeDecision = await (0, phase5_mode_decision_1.runModeDecision)({
+        stackQuery,
+        yes,
+    });
+    // =========================================================================
+    // PHASE 6 OR 7: MODE-SPECIFIC EXECUTION
+    // =========================================================================
+    if (modeDecision.mode === "integrated") {
+        // =====================================================================
+        // PHASE 6: INTEGRATED MODE
+        // =====================================================================
+        // Update existing BenchlingSecret in Quilt stack
+        // NO deployment - Quilt stack handles webhook
+        // MUST return here to prevent fall-through
+        printStepHeader(6, STEP_TITLES.integratedMode);
+        await (0, phase6_integrated_mode_1.runIntegratedMode)({
+            profile,
+            catalogDns: catalogResult.catalogDns,
+            stackQuery,
+            parameters,
+            benchlingSecretArn: modeDecision.benchlingSecretArn,
+            configStorage: xdg,
+            awsProfile,
+            yes,
+        });
+        // CRITICAL: Explicit return for integrated mode
+        // Cannot fall through to deployment
+        const finalConfig = xdg.readProfile(profile);
+        return {
+            success: true,
+            profile,
+            config: finalConfig,
+            deploymentHandled: true, // Integrated mode completes in phase 6, no deployment needed
+        };
+    }
+    else {
+        // =====================================================================
+        // PHASE 7: STANDALONE MODE
+        // =====================================================================
+        // Create new dedicated secret
+        // Optionally deploy as separate stack
+        printStepHeader(6, STEP_TITLES.standaloneMode);
+        const standaloneResult = await (0, phase7_standalone_mode_1.runStandaloneMode)({
+            profile,
+            catalogDns: catalogResult.catalogDns,
+            stackQuery,
+            parameters,
+            configStorage: xdg,
+            yes,
+            setupOnly,
+            awsProfile,
+        });
+        // CRITICAL: Explicit return for standalone mode
+        const finalConfig = xdg.readProfile(profile);
+        return {
+            success: true,
+            profile,
+            config: finalConfig,
+            deploymentHandled: standaloneResult.deploymentHandled,
+        };
+    }
 }
 /**
  * Setup wizard command handler

package/dist/bin/commands/setup-wizard.js.map

@@ -1 +1 @@
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package/dist/lib/benchling-webhook-stack.d.ts.map

@@ -1 +1 @@
-{"version":3,"file":"benchling-webhook-stack.d.ts","sourceRoot":"","sources":["../../lib/benchling-webhook-stack.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,GAAG,MAAM,aAAa,CAAC;AAInC,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAIvC,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAC;AAGnD;;;;;;GAMG;AACH,MAAM,WAAW,0BAA2B,SAAQ,GAAG,CAAC,UAAU;IAC9D;;;OAGG;IACH,QAAQ,CAAC,MAAM,EAAE,WAAW,CAAC;CAChC;AAED,qBAAa,qBAAsB,SAAQ,GAAG,CAAC,KAAK;IAChD,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAiB;IAChD,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAsB;IAC1C,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAiB;IACrC,SAAgB,eAAe,EAAE,MAAM,CAAC;gBAGpC,KAAK,EAAE,SAAS,EAChB,EAAE,EAAE,MAAM,EACV,KAAK,EAAE,0BAA0B;CA0UxC"}
+{"version":3,"file":"benchling-webhook-stack.d.ts","sourceRoot":"","sources":["../../lib/benchling-webhook-stack.ts"],"names":[],"mappings":"AAAA,OAAO,KAAK,GAAG,MAAM,aAAa,CAAC;AAGnC,OAAO,EAAE,SAAS,EAAE,MAAM,YAAY,CAAC;AAIvC,OAAO,EAAE,WAAW,EAAE,MAAM,sBAAsB,CAAC;AAGnD;;;;;;GAMG;AACH,MAAM,WAAW,0BAA2B,SAAQ,GAAG,CAAC,UAAU;IAC9D;;;OAGG;IACH,QAAQ,CAAC,MAAM,EAAE,WAAW,CAAC;CAChC;AAED,qBAAa,qBAAsB,SAAQ,GAAG,CAAC,KAAK;IAChD,OAAO,CAAC,QAAQ,CAAC,cAAc,CAAiB;IAChD,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAsB;IAC1C,OAAO,CAAC,QAAQ,CAAC,GAAG,CAAiB;IACrC,SAAgB,eAAe,EAAE,MAAM,CAAC;gBAGpC,KAAK,EAAE,SAAS,EAChB,EAAE,EAAE,MAAM,EACV,KAAK,EAAE,0BAA0B;CAmTxC"}

package/dist/lib/benchling-webhook-stack.js

@@ -40,7 +40,6 @@ exports.BenchlingWebhookStack = void 0;
 const cdk = __importStar(require("aws-cdk-lib"));
 const ec2 = __importStar(require("aws-cdk-lib/aws-ec2"));
 const ecr = __importStar(require("aws-cdk-lib/aws-ecr"));
-const athena = __importStar(require("aws-cdk-lib/aws-athena"));
 const fargate_service_1 = require("./fargate-service");
 const rest_api_gateway_1 = require("./rest-api-gateway");
 const network_load_balancer_1 = require("./network-load-balancer");
@@ -137,21 +136,6 @@ class BenchlingWebhookStack extends cdk.Stack {
         const imageTagValue = imageTagParam.valueAsString;
         const packageBucketValue = packageBucketParam.valueAsString;
         const quiltDatabaseValue = quiltDatabaseParam.valueAsString;
-        const createAthenaWorkgroupCondition = new cdk.CfnCondition(this, "CreateAthenaWorkgroup", {
-            expression: cdk.Fn.conditionEquals(athenaUserWorkgroupValue, ""),
-        });
-        const fallbackAthenaWorkgroupName = cdk.Fn.sub("${AWS::StackName}-athena-workgroup");
-        const athenaWorkgroup = new athena.CfnWorkGroup(this, "BenchlingAthenaWorkgroup", {
-            name: fallbackAthenaWorkgroupName,
-            description: "Athena workgroup for Benchling webhook package queries",
-            workGroupConfiguration: {
-                enforceWorkGroupConfiguration: true,
-                publishCloudWatchMetricsEnabled: true,
-            },
-            state: "ENABLED",
-        });
-        athenaWorkgroup.cfnOptions.condition = createAthenaWorkgroupCondition;
-        const resolvedAthenaUserWorkgroup = cdk.Fn.conditionIf(createAthenaWorkgroupCondition.logicalId, fallbackAthenaWorkgroupName, athenaUserWorkgroupValue).toString();
         // Bucket name will be resolved at runtime from CloudFormation outputs
         // For CDK purposes, we use a placeholder for IAM permissions
         // VPC Configuration
@@ -247,7 +231,7 @@ class BenchlingWebhookStack extends cdk.Stack {
             quiltWebHost: quiltWebHostValue,
             // NEW: Optional Athena workgroup (from Quilt stack discovery)
             // Query results are managed automatically by the workgroup's AWS-managed configuration
-            athenaUserWorkgroup: resolvedAthenaUserWorkgroup,
+            athenaUserWorkgroup: athenaUserWorkgroupValue,
             // IAM managed policy ARNs for S3 and Athena access
             bucketWritePolicyArn: config.quilt.bucketWritePolicyArn,
             athenaUserPolicyArn: config.quilt.athenaUserPolicyArn,