@publisle/cli 0.0.0-stage → 0.1.1

package/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2026 VoidReg
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

package/README.md

@@ -1,3 +1,13 @@
-# Temporary Holding Version
+# @publisle/cli
 
-This version is a temporary placeholder for this package. An operational version to replace this has been submitted for review and is awaiting a staged release.
+Optional Node-only validation and explicit source upgrades.
+
+Requires Node.js 24 or later. Framework adapters also require their declared peer dependencies.
+This package is part of Publisle, independently versioned at `0.1.1` and published under the npm `beta` tag.
+Frozen contract version integers are independent of npm package versions.
+
+- [Core standard](https://github.com/VoidReg/publisle/blob/main/docs/standards/README.md)
+- [Quickstart and package usage](https://github.com/VoidReg/publisle#readme)
+- [Distribution and release checklist](https://github.com/VoidReg/publisle/blob/main/docs/guides/releases.md)
+
+Core packages do not install Research templates, citeproc, PDF compilers, or TeX.

package/dist/bin.d.ts

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+#!/usr/bin/env node
+export {};
+//# sourceMappingURL=bin.d.ts.map

package/dist/bin.d.ts.map

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+{"version":3,"file":"bin.d.ts","sourceRoot":"","sources":["../src/bin.ts"],"names":[],"mappings":""}

package/dist/bin.js

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+#!/usr/bin/env node
+import { runCli } from "./run.js";
+process.exitCode = await runCli(process.argv.slice(2), {
+    stdout: (text) => {
+        process.stdout.write(text);
+    },
+    stderr: (text) => {
+        process.stderr.write(text);
+    },
+});
+//# sourceMappingURL=bin.js.map

package/dist/bin.js.map

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+{"version":3,"file":"bin.js","sourceRoot":"","sources":["../src/bin.ts"],"names":[],"mappings":";AACA,OAAO,EAAE,MAAM,EAAE,MAAM,UAAU,CAAC;AAElC,OAAO,CAAC,QAAQ,GAAG,MAAM,MAAM,CAAC,OAAO,CAAC,IAAI,CAAC,KAAK,CAAC,CAAC,CAAC,EAAE;IACrD,MAAM,EAAE,CAAC,IAAI,EAAE,EAAE;QACf,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAC7B,CAAC;IACD,MAAM,EAAE,CAAC,IAAI,EAAE,EAAE;QACf,OAAO,CAAC,MAAM,CAAC,KAAK,CAAC,IAAI,CAAC,CAAC;IAC7B,CAAC;CACF,CAAC,CAAC"}

package/dist/index.d.ts

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+import { type ContractBundle } from "@publisle/contracts";
+import { type PrepareOptions } from "@publisle/core";
+import { type MarkdownBlockCodec } from "@publisle/markdown";
+import { type Diagnostic } from "@publisle/schema";
+export interface CliConfig {
+    readonly contractBundle?: ContractBundle;
+    /** Trusted host configuration, not reader-side code. Core blocks are the default registry. */
+    readonly prepare?: PrepareOptions;
+    readonly markdown?: {
+        readonly codecs?: readonly MarkdownBlockCodec[];
+    };
+    /**
+     * Research template registries are read by the optional @publisle/cli-research
+     * plugin; this Core config type stays free of Research imports.
+     */
+    readonly templates?: unknown;
+}
+export interface SourceOperation {
+    readonly command: "validate" | "upgrade";
+    readonly format: "json" | "markdown";
+    readonly sourceName: string;
+    readonly config?: CliConfig;
+}
+export interface SourceResult {
+    readonly diagnostics: readonly Diagnostic[];
+    /** Present only for a successful upgrade. This API never writes files. */
+    readonly output?: string;
+}
+/** Pure orchestration of the public import/parse/prepare/export boundaries. */
+export declare function processSource(source: string, options: SourceOperation): SourceResult;
+/** Explicit pinning preview/output; never mutates the original input or repins locked content. */
+export declare function lockSource(source: string, options: Omit<SourceOperation, "command">): Promise<SourceResult>;
+//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

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+{"version":3,"file":"index.d.ts","sourceRoot":"","sources":["../src/index.ts"],"names":[],"mappings":"AACA,OAAO,EAAgB,KAAK,cAAc,EAAE,MAAM,qBAAqB,CAAC;AACxE,OAAO,EAA2B,KAAK,cAAc,EAAE,MAAM,gBAAgB,CAAC;AAC9E,OAAO,EAGL,KAAK,kBAAkB,EACxB,MAAM,oBAAoB,CAAC;AAC5B,OAAO,EAOL,KAAK,UAAU,EAGhB,MAAM,kBAAkB,CAAC;AAE1B,MAAM,WAAW,SAAS;IACxB,QAAQ,CAAC,cAAc,CAAC,EAAE,cAAc,CAAC;IACzC,8FAA8F;IAC9F,QAAQ,CAAC,OAAO,CAAC,EAAE,cAAc,CAAC;IAClC,QAAQ,CAAC,QAAQ,CAAC,EAAE;QAAE,QAAQ,CAAC,MAAM,CAAC,EAAE,SAAS,kBAAkB,EAAE,CAAA;KAAE,CAAC;IACxE;;;OAGG;IACH,QAAQ,CAAC,SAAS,CAAC,EAAE,OAAO,CAAC;CAC9B;AAED,MAAM,WAAW,eAAe;IAC9B,QAAQ,CAAC,OAAO,EAAE,UAAU,GAAG,SAAS,CAAC;IACzC,QAAQ,CAAC,MAAM,EAAE,MAAM,GAAG,UAAU,CAAC;IACrC,QAAQ,CAAC,UAAU,EAAE,MAAM,CAAC;IAC5B,QAAQ,CAAC,MAAM,CAAC,EAAE,SAAS,CAAC;CAC7B;AAED,MAAM,WAAW,YAAY;IAC3B,QAAQ,CAAC,WAAW,EAAE,SAAS,UAAU,EAAE,CAAC;IAC5C,0EAA0E;IAC1E,QAAQ,CAAC,MAAM,CAAC,EAAE,MAAM,CAAC;CAC1B;AAwBD,+EAA+E;AAC/E,wBAAgB,aAAa,CAC3B,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,eAAe,GACvB,YAAY,CA0Jd;AAED,kGAAkG;AAClG,wBAAsB,UAAU,CAC9B,MAAM,EAAE,MAAM,EACd,OAAO,EAAE,IAAI,CAAC,eAAe,EAAE,SAAS,CAAC,GACxC,OAAO,CAAC,YAAY,CAAC,CA+CvB"}

package/dist/index.js

@@ -0,0 +1,192 @@
+import { coreBlockDefinitions } from "@publisle/blocks-core";
+import { lockDocument } from "@publisle/contracts";
+import { createRegistry, prepare } from "@publisle/core";
+import { fromMarkdown, toMarkdown, } from "@publisle/markdown";
+import { canonicalizeJson, locateDiagnostic, parseDocument, parseJson, JsonBoundaryError, SchemaParseError, } from "@publisle/schema";
+function stable(value) {
+    if (Array.isArray(value))
+        return `[${value.map(stable).join(",")}]`;
+    if (typeof value === "object" && value !== null)
+        return `{${Object.entries(value)
+            .sort(([a], [b]) => a.localeCompare(b))
+            .map(([key, entry]) => `${JSON.stringify(key)}:${stable(entry)}`)
+            .join(",")}}`;
+    return value === undefined ? "undefined" : JSON.stringify(value);
+}
+function semantics(document) {
+    return {
+        schemaVersion: document.schemaVersion,
+        metadata: document.metadata,
+        blocks: document.blocks.map(({ type, schemaVersion, data }) => ({
+            type,
+            schemaVersion,
+            data,
+        })),
+    };
+}
+/** Pure orchestration of the public import/parse/prepare/export boundaries. */
+export function processSource(source, options) {
+    const diagnostics = [];
+    let sourceMap;
+    const location = { source: options.sourceName, line: 1, column: 1 };
+    const error = (code, message) => ({
+        diagnostics: [
+            ...diagnostics,
+            { level: "error", code, message, sourceLocation: location },
+        ],
+    });
+    const config = options.config ?? {};
+    const preparation = {
+        registry: createRegistry(coreBlockDefinitions),
+        unknownBlocks: options.command === "validate" ? "error" : "preserve",
+        ...config.prepare,
+    };
+    const markdownOptions = {
+        ...config.markdown,
+        sourceName: options.sourceName,
+        resolveSchemaVersion: (type) => preparation.registry.get(type)?.schemaVersion,
+    };
+    try {
+        let input;
+        if (options.format === "markdown") {
+            const imported = fromMarkdown(source, markdownOptions);
+            diagnostics.push(...imported.diagnostics);
+            if (!imported.document)
+                return { diagnostics };
+            input = imported.document;
+            sourceMap = imported.sourceMap;
+        }
+        else {
+            const raw = parseJson(source);
+            input = parseDocument(raw);
+            // Parsing intentionally models only portable fields. An upgrade must not
+            // silently discard unmodeled author data at the envelope/block boundary.
+            if (options.command === "upgrade" && stable(raw) !== stable(input))
+                return error("unmodeled-source-fields", "JSON contains fields outside the portable schema; move them into metadata.extensions or a block payload before upgrading.");
+        }
+        const originalPayloads = new Map(input.blocks.map((block) => [
+            block.id,
+            {
+                schemaVersion: block.schemaVersion,
+                data: stable(block.data),
+            },
+        ]));
+        const prepared = prepare(input, {
+            ...preparation,
+            ...(sourceMap ? { sourceMap } : {}),
+        });
+        diagnostics.push(...prepared.diagnostics.map((item) => locateDiagnostic(item, sourceMap ?? { document: location, blocks: {} })));
+        if (!prepared.document ||
+            diagnostics.some(({ level }) => level === "error"))
+            return { diagnostics };
+        if (options.command === "validate")
+            return { diagnostics };
+        // Explicitly remove preparation flags/plans and serialize only the public wire envelope.
+        const upgraded = parseDocument({
+            ...(input.dependencies === undefined
+                ? {}
+                : { dependencies: input.dependencies }),
+            ...(input.extensions === undefined
+                ? {}
+                : { extensions: input.extensions }),
+            schemaVersion: prepared.document.schemaVersion,
+            ...(prepared.document.metadata === undefined
+                ? {}
+                : { metadata: prepared.document.metadata }),
+            blocks: prepared.document.blocks.map(({ id, type, schemaVersion, data, readable }) => ({
+                ...(readable === undefined ? {} : { readable }),
+                id,
+                type,
+                schemaVersion,
+                data,
+            })),
+        });
+        for (const block of upgraded.blocks) {
+            const original = originalPayloads.get(block.id);
+            if (original?.schemaVersion === block.schemaVersion &&
+                original.data !== stable(block.data))
+                diagnostics.push(locateDiagnostic({
+                    level: "warning",
+                    code: "block-data-normalized",
+                    message: "Registered parsing/defaults/normalization changed this payload without a version change. Review the upgrade preview before writing.",
+                    blockId: block.id,
+                }, sourceMap ?? { document: location, blocks: {} }));
+        }
+        if (options.format === "json")
+            return { diagnostics, output: `${JSON.stringify(upgraded, null, 2)}\n` };
+        const exported = toMarkdown(upgraded, {
+            ...config.markdown,
+            policy: "fallback",
+        });
+        diagnostics.push(...exported.diagnostics.map((item) => locateDiagnostic(item, sourceMap)));
+        if (exported.markdown === undefined ||
+            diagnostics.some(({ level }) => level === "error"))
+            return { diagnostics };
+        const roundTrip = fromMarkdown(exported.markdown, markdownOptions);
+        diagnostics.push(...roundTrip.diagnostics);
+        if (!roundTrip.document ||
+            stable(semantics(roundTrip.document)) !== stable(semantics(upgraded)))
+            return error("markdown-roundtrip-loss", "Canonical Markdown cannot preserve this document's upgraded semantics. No output was produced; upgrade the JSON representation instead or fix the host codec.");
+        if (diagnostics.some(({ level }) => level === "error"))
+            return { diagnostics };
+        if (upgraded.blocks.some((block, index) => block.id !== roundTrip.document?.blocks[index]?.id))
+            diagnostics.push({
+                level: "warning",
+                code: "markdown-block-ids-changed",
+                message: "Canonical native Markdown regenerates some block IDs. Stable labels remain; use JSON when block identity must be retained.",
+                sourceLocation: location,
+            });
+        return { diagnostics, output: exported.markdown };
+    }
+    catch (cause) {
+        return error(cause instanceof SchemaParseError || cause instanceof JsonBoundaryError
+            ? cause.code
+            : "source-operation-failed", cause instanceof Error ? cause.message : "Source processing failed.");
+    }
+}
+/** Explicit pinning preview/output; never mutates the original input or repins locked content. */
+export async function lockSource(source, options) {
+    try {
+        const imported = options.format === "markdown"
+            ? fromMarkdown(source, {
+                ...options.config?.markdown,
+                sourceName: options.sourceName,
+            })
+            : undefined;
+        if (imported && !imported.document)
+            return { diagnostics: imported.diagnostics };
+        const raw = imported?.document ?? parseJson(source);
+        const document = parseDocument(raw);
+        if (canonicalizeJson(raw) !== canonicalizeJson(document))
+            throw new Error("Preserve original source: unsupported envelope fields must not be dropped while locking.");
+        const registry = options.config?.prepare?.registry ?? createRegistry(coreBlockDefinitions);
+        const locked = await lockDocument(document, registry);
+        if (options.format === "json")
+            return {
+                output: JSON.stringify(locked.document, null, 2) + "\n",
+                diagnostics: imported?.diagnostics ?? [],
+            };
+        const exported = toMarkdown(locked.document, { policy: "archival" });
+        return {
+            ...(exported.markdown === undefined ? {} : { output: exported.markdown }),
+            diagnostics: [...(imported?.diagnostics ?? []), ...exported.diagnostics],
+        };
+    }
+    catch (error) {
+        return {
+            diagnostics: [
+                {
+                    level: "error",
+                    code: error instanceof Error &&
+                        "code" in error &&
+                        typeof error.code === "string"
+                        ? error.code
+                        : "document-lock-failed",
+                    message: error instanceof Error ? error.message : "Locking failed.",
+                    sourceLocation: { source: options.sourceName, line: 1, column: 1 },
+                },
+            ],
+        };
+    }
+}
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

@@ -0,0 +1 @@
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package/dist/run.d.ts

@@ -0,0 +1,7 @@
+export interface CliIo {
+    readonly stdout: (text: string) => void;
+    readonly stderr: (text: string) => void;
+}
+/** Optional Node-only runner. Validation and preview never invoke a write operation. */
+export declare function runCli(args: readonly string[], io: CliIo): Promise<number>;
+//# sourceMappingURL=run.d.ts.map

package/dist/run.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"run.d.ts","sourceRoot":"","sources":["../src/run.ts"],"names":[],"mappings":"AA6DA,MAAM,WAAW,KAAK;IACpB,QAAQ,CAAC,MAAM,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,IAAI,CAAC;IACxC,QAAQ,CAAC,MAAM,EAAE,CAAC,IAAI,EAAE,MAAM,KAAK,IAAI,CAAC;CACzC;AAkGD,wFAAwF;AACxF,wBAAsB,MAAM,CAC1B,IAAI,EAAE,SAAS,MAAM,EAAE,EACvB,EAAE,EAAE,KAAK,GACR,OAAO,CAAC,MAAM,CAAC,CA4LjB"}

package/dist/run.js

@@ -0,0 +1,291 @@
+var __rewriteRelativeImportExtension = (this && this.__rewriteRelativeImportExtension) || function (path, preserveJsx) {
+    if (typeof path === "string" && /^\.\.?\//.test(path)) {
+        return path.replace(/\.(tsx)$|((?:\.d)?)((?:\.[^./]+?)?)\.([cm]?)ts$/i, function (m, tsx, d, ext, cm) {
+            return tsx ? preserveJsx ? ".jsx" : ".js" : d && (!ext || !cm) ? m : (d + ext + "." + cm.toLowerCase() + "js");
+        });
+    }
+    return path;
+};
+import { chmod, lstat, mkdtemp, readFile, rename, rmdir, unlink, writeFile, } from "node:fs/promises";
+import { dirname, extname, join, resolve } from "node:path";
+import { pathToFileURL } from "node:url";
+import { isPlainObject, parseDocument, parseJson, } from "@publisle/schema";
+import { toReadingMarkdown } from "@publisle/markdown";
+import { processSource, lockSource } from "./index.js";
+import { exportSemanticDocument, inspectDocument, validateContractBundle, } from "@publisle/contracts";
+import { createRegistry } from "@publisle/core";
+import { coreBlockDefinitions } from "@publisle/blocks-core";
+const researchCommands = ["export", "bibliography", "doctor", "setup"];
+function isResearchCommand(value) {
+    return researchCommands.includes(value ?? "");
+}
+async function loadResearchPlugin() {
+    try {
+        return await import("@publisle/cli-research");
+    }
+    catch (cause) {
+        if (cause instanceof Error &&
+            "code" in cause &&
+            (cause.code === "ERR_MODULE_NOT_FOUND" ||
+                cause.code === "ERR_UNSUPPORTED_RESOLVE"))
+            return undefined;
+        throw cause;
+    }
+}
+const help = `Usage: publisle validate|upgrade|lock <file.json|file.md> [--config <host.mjs|host.ts>] [--format json|markdown]
+JSON-only inspection: publisle inspect|semantic <source.json> [--bundle <contracts.json>] [--mode linked|standalone]
+Reading projection: publisle reading <source.json> (not a round trip).
+Research profile (requires the optional @publisle/cli-research plugin):
+  publisle export <file.json|file.md> --to bibtex|csl-json|latex|jats|pdf|submission [--template ...] [--output <new-file>]
+  publisle bibliography <file.bib> | publisle doctor | publisle setup compiler
+Upgrade: [--output <new-file> | --in-place]. Lock: [--output <new-file>] (never in-place).
+--output refuses existing files.
+Config is trusted executable host code exporting a default CliConfig. Node >=24 required.
+Exit codes: 0 success (warnings allowed), 1 document errors, 2 usage/config/I/O errors.
+`;
+function diagnosticText(item, file) {
+    const where = item.sourceLocation;
+    return `${where?.source ?? file}${where ? `:${String(where.line)}:${String(where.column)}` : ""}: ${item.level} [${item.code}]${item.blockId ? ` (${item.blockId})` : ""}${item.profile ? ` {${item.profile}}` : ""}: ${item.message}\n`;
+}
+async function loadConfig(file) {
+    if (!file)
+        return {};
+    const imported = await import(__rewriteRelativeImportExtension(pathToFileURL(resolve(file)).href));
+    if (!isPlainObject(imported) &&
+        !(typeof imported === "object" && imported !== null))
+        throw new Error("Config must export a default CliConfig object.");
+    const config = imported["default"];
+    if (!isPlainObject(config))
+        throw new Error("Config must export a default CliConfig object.");
+    const preparation = config["prepare"];
+    if (preparation !== undefined &&
+        (!isPlainObject(preparation) ||
+            typeof preparation["registry"]?.get !==
+                "function"))
+        throw new Error("config.prepare must provide a registry created with createRegistry().");
+    if (isPlainObject(preparation) &&
+        preparation["unknownBlocks"] !== undefined &&
+        preparation["unknownBlocks"] !== "preserve" &&
+        preparation["unknownBlocks"] !== "error")
+        throw new Error("config.prepare.unknownBlocks must be preserve or error.");
+    const markdown = config["markdown"];
+    if (markdown !== undefined &&
+        (!isPlainObject(markdown) ||
+            (markdown["codecs"] !== undefined && !Array.isArray(markdown["codecs"]))))
+        throw new Error("config.markdown must contain an optional codecs array.");
+    return config;
+}
+async function replaceSource(file, original, output) {
+    const stat = await lstat(file);
+    if (!stat.isFile() || stat.nlink !== 1)
+        throw new Error("--in-place requires a regular non-symlink file with one hard link.");
+    const temporary = await mkdtemp(join(dirname(file), ".publisle-upgrade-"));
+    const staged = join(temporary, "source");
+    try {
+        await writeFile(staged, output, { flag: "wx", mode: stat.mode & 0o777 });
+        await chmod(staged, stat.mode & 0o777);
+        const current = await lstat(file);
+        if (current.dev !== stat.dev ||
+            current.ino !== stat.ino ||
+            current.nlink !== 1 ||
+            !current.isFile() ||
+            (await readFile(file, "utf8")) !== original)
+            throw new Error("Source changed while upgrading; refusing to overwrite it.");
+        await rename(staged, file);
+    }
+    finally {
+        await unlink(staged).catch((cause) => {
+            if (!(typeof cause === "object" &&
+                cause !== null &&
+                "code" in cause &&
+                cause.code === "ENOENT"))
+                throw cause;
+        });
+        await rmdir(temporary);
+    }
+}
+/** Optional Node-only runner. Validation and preview never invoke a write operation. */
+export async function runCli(args, io) {
+    if (args.length === 1 && (args[0] === "--help" || args[0] === "-h")) {
+        io.stdout(help);
+        return 0;
+    }
+    try {
+        const command = args[0];
+        if (isResearchCommand(command)) {
+            const plugin = await loadResearchPlugin();
+            if (plugin === undefined) {
+                io.stderr(`publisle: ${command} belongs to the Publisle Research profile. Install @publisle/cli-research alongside @publisle/cli to use it.\n`);
+                return 2;
+            }
+            return await plugin.runResearchCommand(command, args, io, {
+                loadConfig: (file) => loadConfig(file),
+                diagnosticText,
+            });
+        }
+        if (command === "reading") {
+            if (args.length !== 2 || !args[1] || args[1].startsWith("-"))
+                throw new Error("reading requires only canonical source.json");
+            const source = parseDocument(parseJson(await readFile(resolve(args[1]))));
+            const result = toReadingMarkdown(source);
+            for (const item of result.diagnostics)
+                io.stderr(diagnosticText(item, args[1]));
+            if (result.markdown === undefined)
+                return 1;
+            io.stdout(result.markdown);
+            return 0;
+        }
+        if (command === "inspect" || command === "semantic") {
+            const file = args[1];
+            if (!file || file.startsWith("-"))
+                throw new Error("Inspection requires canonical source.json");
+            let bundleFile;
+            let mode = "linked";
+            const seen = new Set();
+            for (let index = 2; index < args.length; index += 2) {
+                const key = args[index];
+                const value = args[index + 1];
+                if (!key || seen.has(key) || !value || value.startsWith("-"))
+                    throw new Error("Invalid or duplicate inspection option");
+                seen.add(key);
+                if (key === "--bundle")
+                    bundleFile = value;
+                else if (key === "--mode" &&
+                    (value === "linked" || value === "standalone"))
+                    mode = value;
+                else
+                    throw new Error("Inspection accepts only --bundle and --mode linked|standalone; no executable config");
+            }
+            const source = parseJson(await readFile(resolve(file)));
+            const bundle = bundleFile
+                ? await validateContractBundle(parseJson(await readFile(resolve(bundleFile))))
+                : undefined;
+            const options = { mode, offline: true, ...(bundle ? { bundle } : {}) };
+            const output = command === "inspect"
+                ? await inspectDocument(source, options)
+                : await exportSemanticDocument(source, options);
+            io.stdout(JSON.stringify(output, null, 2) + "\n");
+            return 0;
+        }
+        if (command !== "validate" && command !== "upgrade" && command !== "lock")
+            throw new Error("Expected validate, upgrade, lock, inspect, semantic, or reading. Research commands (export, bibliography, doctor, setup) require @publisle/cli-research.");
+        let file;
+        let configFile;
+        let outputFile;
+        let format;
+        let inPlace = false;
+        const seen = new Set();
+        for (let index = 1; index < args.length; index++) {
+            const arg = args[index];
+            if (arg === undefined)
+                continue;
+            if (!arg.startsWith("-")) {
+                if (file)
+                    throw new Error("Only one input file is supported.");
+                file = arg;
+                continue;
+            }
+            if (seen.has(arg))
+                throw new Error(`Duplicate option ${arg}.`);
+            seen.add(arg);
+            if (arg === "--in-place") {
+                inPlace = true;
+                continue;
+            }
+            if (arg !== "--config" && arg !== "--output" && arg !== "--format")
+                throw new Error(`Unknown option ${arg}.`);
+            const value = args[++index];
+            if (!value || value.startsWith("-"))
+                throw new Error(`Missing value for ${arg}.`);
+            if (arg === "--config")
+                configFile = value;
+            if (arg === "--output")
+                outputFile = value;
+            if (arg === "--format") {
+                if (value !== "json" && value !== "markdown")
+                    throw new Error("--format must be json or markdown.");
+                format = value;
+            }
+        }
+        if (!file)
+            throw new Error("An input file is required.");
+        if (command === "validate" && (outputFile || inPlace))
+            throw new Error("validate does not accept write options.");
+        if (command === "lock" && inPlace)
+            throw new Error("lock preserves the original source: use stdout preview or --output <new-file>.");
+        if (outputFile && inPlace)
+            throw new Error("Choose --output or --in-place, not both.");
+        file = resolve(file);
+        if (outputFile && resolve(outputFile) === file)
+            throw new Error("Use --in-place to authorize replacing the input.");
+        if (!format) {
+            const extension = extname(file).toLowerCase();
+            if (extension === ".json")
+                format = "json";
+            else if (extension === ".md" || extension === ".markdown")
+                format = "markdown";
+            else
+                throw new Error("Unknown file extension; provide --format json|markdown.");
+        }
+        const bytes = await readFile(file);
+        let original;
+        try {
+            original = new TextDecoder("utf-8", {
+                fatal: true,
+                ignoreBOM: true,
+            }).decode(bytes);
+        }
+        catch {
+            io.stderr(`${file}: error [invalid-json-unicode]: Input is not valid UTF-8.\n`);
+            return 1;
+        }
+        let config = await loadConfig(configFile);
+        if (config.contractBundle !== undefined) {
+            const bundle = await validateContractBundle(config.contractBundle);
+            config = {
+                ...config,
+                prepare: {
+                    ...(config.prepare ?? {
+                        registry: createRegistry(coreBlockDefinitions),
+                    }),
+                    contractPins: bundle.contracts.map((entry) => ({
+                        type: entry.contract.identity.type,
+                        schemaVersion: entry.contract.identity.schemaVersion,
+                        id: entry.id,
+                        digest: entry.digest,
+                    })),
+                },
+            };
+        }
+        const operation = {
+            format,
+            sourceName: file,
+            config,
+        };
+        const result = command === "lock"
+            ? await lockSource(original, operation)
+            : processSource(original, { ...operation, command });
+        for (const item of result.diagnostics)
+            io.stderr(diagnosticText(item, file));
+        if (result.diagnostics.some(({ level }) => level === "error"))
+            return 1;
+        if (command === "validate") {
+            io.stderr(`${file}: valid\n`);
+            return 0;
+        }
+        if (result.output === undefined)
+            throw new Error("Upgrade produced no output.");
+        if (inPlace)
+            await replaceSource(file, original, result.output);
+        else if (outputFile)
+            await writeFile(resolve(outputFile), result.output, { flag: "wx" });
+        else
+            io.stdout(result.output);
+        return 0;
+    }
+    catch (cause) {
+        io.stderr(`publisle: ${cause instanceof Error ? cause.message : "CLI operation failed."}\n${help}`);
+        return 2;
+    }
+}
+//# sourceMappingURL=run.js.map

package/dist/run.js.map

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