@promptci/core 0.1.0 → 0.2.0

package/dist/prompt-cache.js

@@ -1,6 +1,8 @@
+import { INSTRUCTION_FILE_TYPES } from './types.js';
 import { matchEvidence } from './evidence.js';
 import * as path from 'node:path';
 import * as crypto from 'node:crypto';
+import { fileIdPath } from './finding-id.js';
 /**
  * B4: every id in this file was keyed by `${file.fileType}` — two files
  * sharing a fileType (e.g. CLAUDE.md and .claude/notes.md, both 'claude')
@@ -38,14 +40,14 @@ const LOCAL_PATH_PATTERN = /(?:[a-zA-Z]:\\users\\[a-zA-Z0-9_-]+)|(?:\/users\/[a-
 export function detectPromptCacheFriendliness(files) {
     const issues = [];
     // Focus only on persistent, always-loaded instruction files
-    const targetFiles = files.filter((f) => ['claude', 'agents', 'cursor', 'windsurf', 'copilot', 'prompt'].includes(f.fileType));
+    const targetFiles = files.filter((f) => INSTRUCTION_FILE_TYPES.has(f.fileType));
     for (const file of targetFiles) {
         const fileName = path.basename(file.path);
         // 1. Timestamps and Dates
         for (const pat of DATE_PATTERNS) {
             if (pat.re.test(file.content)) {
                 issues.push({
-                    id: promptCacheIssueId('volatile-timestamp', file.path),
+                    id: promptCacheIssueId('volatile-timestamp', fileIdPath(file)),
                     severity: 'warning',
                     category: 'context_bloat',
                     title: 'Volatile timestamp in instruction file',
@@ -64,7 +66,7 @@ export function detectPromptCacheFriendliness(files) {
         for (const pat of SCAN_REPORT_PATTERNS) {
             if (pat.re.test(file.content)) {
                 issues.push({
-                    id: promptCacheIssueId('pasted-report', file.path),
+                    id: promptCacheIssueId('pasted-report', fileIdPath(file)),
                     severity: 'warning',
                     category: 'context_bloat',
                     title: 'Pasted scan report or summary in instructions',
@@ -83,7 +85,7 @@ export function detectPromptCacheFriendliness(files) {
         for (const pat of BRANCH_TASK_PATTERNS) {
             if (pat.re.test(file.content)) {
                 issues.push({
-                    id: promptCacheIssueId('volatile-branch-task', file.path),
+                    id: promptCacheIssueId('volatile-branch-task', fileIdPath(file)),
                     severity: 'warning',
                     category: 'context_bloat',
                     title: 'Volatile branch or task status in instructions',
@@ -102,7 +104,7 @@ export function detectPromptCacheFriendliness(files) {
         if (LOCAL_PATH_PATTERN.test(file.content)) {
             const match = file.content.match(LOCAL_PATH_PATTERN)?.[0] ?? '';
             issues.push({
-                id: promptCacheIssueId('local-paths', file.path),
+                id: promptCacheIssueId('local-paths', fileIdPath(file)),
                 severity: 'warning',
                 category: 'context_bloat',
                 title: 'Local machine paths in instructions',
@@ -139,7 +141,7 @@ export function detectPromptCacheFriendliness(files) {
         }
         if (maxTableRows > 15) {
             issues.push({
-                id: promptCacheIssueId('large-table', file.path),
+                id: promptCacheIssueId('large-table', fileIdPath(file)),
                 severity: 'warning',
                 category: 'context_bloat',
                 title: 'Large table in instruction file',

package/dist/prompt-cache.js.map

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package/dist/repo-context.d.ts

@@ -1,5 +1,7 @@
 import type { AiConfigFiles } from './ai-config.js';
 import type { ManifestData } from './manifest-consistency.js';
+import type { WorkspaceManifest } from './workspace-manifests.js';
+import type { MakefileFacts } from './makefile.js';
 import type { InstructionFile, ProjectType, ScanInput, ScanMetrics } from './types.js';
 import type { CustomRule } from './custom-rules.js';
 export type PackageManagerName = 'pnpm' | 'npm' | 'yarn' | 'bun' | 'unknown';
@@ -19,9 +21,23 @@ export type WorkflowCommand = {
     command: string;
     line: number;
 };
+/** Raw text of one GitHub Actions workflow file. */
+export type WorkflowSource = {
+    /** Repo-relative, forward slashes (e.g. `.github/workflows/ci.yml`). */
+    filePath: string;
+    content: string;
+};
 export type WorkflowFacts = {
     files: string[];
     commands: WorkflowCommand[];
+    /**
+     * Workflow and composite-action (`action.yml`) file contents for detectors
+     * that audit the YAML itself (action pinning). These are CI configuration,
+     * never instruction files: they are NOT in `RepoContext.files`, so no prose
+     * detector ever reads them. Honors the scan's `exclude` patterns. Optional
+     * so hand-built contexts without it keep type-checking.
+     */
+    sources?: WorkflowSource[];
 };
 export type RepoContext = {
     repoRoot: string;
@@ -30,12 +46,34 @@ export type RepoContext = {
     manifests: ManifestData;
     packageJson: PackageJsonFacts;
     workflows: WorkflowFacts;
+    /**
+     * The root package.json plus every workspace package manifest (scripts,
+     * dependency names, binaries). Lets the script-validity checks resolve
+     * `--filter`/`-r` commands and package binaries the way the package manager
+     * would. Optional so hand-built contexts without it keep type-checking.
+     */
+    workspaces?: WorkspaceManifest[];
+    /**
+     * Workspace discovery stopped at its manifest cap, so `workspaces` is a
+     * sample. Checks that need the complete set (is this binary installed?) stay
+     * permissive when this is set.
+     */
+    workspacesTruncated?: boolean;
+    /**
+     * Targets of the repo-root Makefile (GNUmakefile / makefile / Makefile), for
+     * validating documented `make <target>` commands. Undefined when the root has
+     * no Makefile. Makefiles in subdirectories (`make -C dir`, `cd dir && make`)
+     * are read on demand by the check itself.
+     */
+    makefile?: MakefileFacts;
     /**
      * Config files for the ai_config detectors, discovered here so they share
      * the scan's include/exclude and size/binary policy instead of re-walking
      * the repo with a policy of their own.
      */
     aiConfig: AiConfigFiles;
+    /** The scan's `exclude` patterns, for detectors that walk the repo themselves. */
+    exclude?: string[];
     metrics: ScanMetrics;
     contextBudget?: number;
     fileContextBudget?: number;
@@ -53,6 +91,14 @@ export type RepoContext = {
      * `aiConfig`, independent of this array.
      */
     onDemandFiles: InstructionFile[];
+    /**
+     * Symlinked names of files already in `files`/`onDemandFiles` (e.g. `CLAUDE.md`
+     * -> `AGENTS.md`), each with `aliasOf` naming the real file. Kept out of
+     * `files` so no detector scans the same content twice or reports a file as a
+     * duplicate of its own symlink; listed in the report inventory. Optional so
+     * hand-built contexts keep type-checking.
+     */
+    aliasFiles?: InstructionFile[];
     /**
      * Validated rules loaded from `.promptci/custom-rules.json` (empty when the
      * file is absent). Interpreted by the `custom-rules` detector.
@@ -60,5 +106,12 @@ export type RepoContext = {
     customRules: CustomRule[];
 };
 export declare function parsePackageJsonFacts(raw: string | undefined, lockfiles: string[]): PackageJsonFacts;
+/**
+ * True when a repo-relative POSIX path is covered by an `exclude` pattern —
+ * matched against the file itself AND each ancestor directory (bare and with a
+ * trailing slash), the way discovery's glob ignore treats a directory pattern:
+ * `exclude: [".github"]` or `[".github/workflows/"]` silences every file under it.
+ */
+export declare function isExcludedPath(posix: string, exclude: string[]): boolean;
 export declare function buildRepoContext(input: ScanInput): Promise<RepoContext>;
 //# sourceMappingURL=repo-context.d.ts.map

package/dist/repo-context.d.ts.map

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package/dist/repo-context.js

@@ -1,9 +1,13 @@
 import * as fs from 'node:fs/promises';
 import * as path from 'node:path';
-import { discoverAiConfigFiles, resolveWithinRoot as safeResolveWithinRoot } from './ai-config.js';
+import { discoverAiConfigFiles, listFiles, resolveReadableWithinRoot } from './ai-config.js';
 import { detectProjectType, detectProjectTypeFromContent } from './project-type.js';
-import { scanFiles } from './scanner.js';
+import micromatch from 'micromatch';
+import { MAX_FILE_SIZE, isBinary, parseSections, scanFilesWithAliases } from './scanner.js';
+import { discoverWorkspaceManifests } from './workspace-manifests.js';
+import { readMakefile } from './makefile.js';
 import { isOnDemandFileType } from './types.js';
+import { realPathWithinRoot } from './path-containment.js';
 import { budgetForTargetModel } from './model-budgets.js';
 import { loadCustomRules } from './custom-rules.js';
 const LOCKFILES = [
@@ -24,9 +28,11 @@ function emptyPackageJsonFacts() {
     };
 }
 // Throwing wrapper over the shared null-returning guard in ai-config.ts — one
-// implementation of the path-traversal check, two failure styles.
+// implementation of the path-traversal check, two failure styles. Every caller
+// reads what it resolves, so it is the symlink-aware variant: a manifest or
+// skill committed as a link to a file outside the repo is treated as absent.
 function resolveWithinRoot(repoRoot, relativePath) {
-    const resolved = safeResolveWithinRoot(repoRoot, relativePath);
+    const resolved = resolveReadableWithinRoot(repoRoot, relativePath);
     if (resolved === null) {
         throw new Error(`Path escapes repo root: ${relativePath}`);
     }
@@ -156,28 +162,123 @@ function extractWorkflowCommands(filePath, content) {
     }
     return commands;
 }
-async function readWorkflowFacts(repoRoot) {
-    const workflowDir = resolveWithinRoot(repoRoot, path.join('.github', 'workflows'));
+async function readWorkflowFacts(repoRoot, exclude = []) {
+    let workflowDir;
     let entries;
     try {
+        workflowDir = resolveWithinRoot(repoRoot, path.join('.github', 'workflows'));
         entries = await fs.readdir(workflowDir, { withFileTypes: true });
     }
     catch {
-        return { files: [], commands: [] };
+        return { files: [], commands: [], sources: await readCompositeActionSources(repoRoot, exclude) };
     }
     const files = entries
         .filter((entry) => entry.isFile() && /\.(ya?ml)$/i.test(entry.name))
         .map((entry) => path.join(workflowDir, entry.name))
         .sort();
     const commands = [];
+    const sources = [];
     for (const file of files) {
         const relative = path.relative(repoRoot, file);
-        const content = await fs.readFile(file, 'utf-8');
+        if (!realPathWithinRoot(repoRoot, file))
+            continue; // symlink leaving the repo
+        let content;
+        try {
+            content = await fs.readFile(file, 'utf-8');
+        }
+        catch {
+            continue;
+        }
         commands.push(...extractWorkflowCommands(relative, content));
+        // Only the YAML-auditing detectors read `sources`, so only they honor
+        // `exclude` — ci-alignment's `files`/`commands` keep their existing scope.
+        const posix = relative.replace(/\\/g, '/');
+        if (content.length <= MAX_FILE_SIZE && !isExcludedPath(posix, exclude)) {
+            sources.push({ filePath: posix, content });
+        }
     }
+    sources.push(...(await readCompositeActionSources(repoRoot, exclude)));
     return {
         files: files.map((file) => path.relative(repoRoot, file)),
         commands,
+        sources,
+    };
+}
+/** Composite actions: a root `action.yml` and any under `.github/actions/`. */
+const COMPOSITE_ACTION_GLOBS = [
+    'action.yml',
+    'action.yaml',
+    '.github/actions/**/action.yml',
+    '.github/actions/**/action.yaml',
+];
+async function readCompositeActionSources(repoRoot, exclude) {
+    const sources = [];
+    for (const rel of listFiles(repoRoot, COMPOSITE_ACTION_GLOBS)) {
+        if (isExcludedPath(rel, exclude))
+            continue;
+        const abs = resolveReadableWithinRoot(repoRoot, rel);
+        if (!abs)
+            continue;
+        try {
+            const stat = await fs.stat(abs);
+            if (!stat.isFile() || stat.size > MAX_FILE_SIZE)
+                continue;
+            sources.push({ filePath: rel, content: await fs.readFile(abs, 'utf-8') });
+        }
+        catch {
+            // unreadable — skip
+        }
+    }
+    return sources;
+}
+/**
+ * True when a repo-relative POSIX path is covered by an `exclude` pattern —
+ * matched against the file itself AND each ancestor directory (bare and with a
+ * trailing slash), the way discovery's glob ignore treats a directory pattern:
+ * `exclude: [".github"]` or `[".github/workflows/"]` silences every file under it.
+ */
+export function isExcludedPath(posix, exclude) {
+    if (exclude.length === 0)
+        return false;
+    const candidates = [posix];
+    const parts = posix.split('/');
+    for (let i = 1; i < parts.length; i++) {
+        const dir = parts.slice(0, i).join('/');
+        candidates.push(dir, `${dir}/`);
+    }
+    return candidates.some((c) => micromatch.isMatch(c, exclude, { dot: true }));
+}
+/**
+ * Read a discovered SKILL.md into the same InstructionFile shape scanFiles
+ * produces, under the same size/binary guards (the supply-chain detector reads
+ * and reports oversized or binary skills on its own).
+ */
+async function readSkillFile(repoRoot, relativePath, absPath) {
+    let buffer;
+    try {
+        const stat = await fs.stat(resolveWithinRoot(repoRoot, relativePath));
+        if (!stat.isFile() || stat.size > MAX_FILE_SIZE)
+            return undefined;
+        buffer = await fs.readFile(resolveWithinRoot(repoRoot, relativePath));
+    }
+    catch {
+        return undefined;
+    }
+    if (isBinary(buffer))
+        return undefined;
+    const content = buffer.toString('utf-8');
+    const lines = content.split('\n');
+    if (content.endsWith('\n'))
+        lines.pop();
+    return {
+        path: absPath,
+        relativePath,
+        fileType: 'skill',
+        content,
+        sections: parseSections(content, absPath, relativePath),
+        lineCount: lines.length,
+        charCount: content.length,
+        estimatedTokens: Math.round(content.length / 4),
     };
 }
 function buildMetrics(files, onDemandFiles) {
@@ -197,7 +298,7 @@ function buildMetrics(files, onDemandFiles) {
 }
 export async function buildRepoContext(input) {
     const repoRoot = path.resolve(input.repoPath);
-    const scanned = await scanFiles({ ...input, repoPath: repoRoot });
+    const { files: scanned, aliases: aliasFiles } = await scanFilesWithAliases({ ...input, repoPath: repoRoot });
     // Split load-on-demand skill/agent bodies out of the always-loaded set the
     // prose/bloat detectors consume via `context.files`. They stay available on
     // `onDemandFiles` for reporting and suppression parsing.
@@ -206,6 +307,21 @@ export async function buildRepoContext(input) {
     for (const file of scanned) {
         (isOnDemandFileType(file.fileType) ? onDemandFiles : files).push(file);
     }
+    // Skills discovered outside the scanner's patterns (`.agents/skills/`, plugin
+    // `skills/<name>/`) still belong in the report inventory. Load-on-demand, so
+    // never in `files`. (Inline annotations inside a skill directory do NOT
+    // suppress skill-supply-chain findings — see scan.ts.)
+    const aiConfig = discoverAiConfigFiles(repoRoot, input);
+    const scannedPaths = new Set(scanned.map((file) => file.path));
+    for (const rel of aiConfig.allSkills ?? []) {
+        const abs = path.resolve(repoRoot, rel);
+        if (scannedPaths.has(abs))
+            continue;
+        const skillFile = await readSkillFile(repoRoot, rel, abs);
+        if (skillFile)
+            onDemandFiles.push(skillFile);
+    }
+    onDemandFiles.sort((a, b) => a.path.localeCompare(b.path));
     let projectType = input.projectType && input.projectType !== 'auto'
         ? input.projectType
         : await detectProjectType(repoRoot);
@@ -217,10 +333,12 @@ export async function buildRepoContext(input) {
         readRootFile(repoRoot, 'pyproject.toml'),
         readRootFile(repoRoot, 'requirements.txt'),
         existingRootFiles(repoRoot, LOCKFILES),
-        readWorkflowFacts(repoRoot),
+        readWorkflowFacts(repoRoot, input.exclude),
         // Throws a clear CustomRulesError on malformed config, surfaced at scan time.
         loadCustomRules(repoRoot),
     ]);
+    const workspaceDiscovery = await discoverWorkspaceManifests(repoRoot, packageJson, (posix) => isExcludedPath(posix, input.exclude ?? []));
+    const makefile = readMakefile(repoRoot, '.');
     const manifests = {};
     if (packageJson)
         manifests.packageJson = packageJson;
@@ -238,7 +356,11 @@ export async function buildRepoContext(input) {
         manifests,
         packageJson: parsePackageJsonFacts(packageJson, lockfiles),
         workflows,
-        aiConfig: discoverAiConfigFiles(repoRoot, input),
+        workspaces: workspaceDiscovery.manifests,
+        workspacesTruncated: workspaceDiscovery.truncated,
+        ...(makefile ? { makefile } : {}),
+        aiConfig,
+        ...(input.exclude && input.exclude.length > 0 ? { exclude: input.exclude } : {}),
         metrics: buildMetrics(files, onDemandFiles),
         // A targetModel preset scales the context-bloat thresholds to that model's
         // window, but an explicit budget (flag or config) always wins over it.
@@ -246,6 +368,7 @@ export async function buildRepoContext(input) {
         fileContextBudget: input.fileContextBudget ?? modelPreset?.fileContextBudget,
         vagueGuidanceSeverity: input.vagueGuidanceSeverity,
         onDemandFiles,
+        ...(aliasFiles.length > 0 ? { aliasFiles } : {}),
         customRules,
     };
 }

package/dist/repo-context.js.map

@@ -1 +1 @@
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package/dist/report.d.ts

@@ -35,6 +35,13 @@ export type HistoryEntry = {
     archiveJsonPath: string;
 };
 export declare function scoreLabel(score: number): string;
+/**
+ * Render `text` as a markdown inline code span that cannot be broken out of: the
+ * fence is one backtick longer than the longest backtick run inside, and every
+ * invisible/control/format character is shown as `<U+XXXX>` (visibleText).
+ * Plain paths render exactly as a single-backtick span.
+ */
+export declare function inlineCode(text: string): string;
 /**
  * Generate a Markdown-formatted scan report.
  */

package/dist/report.d.ts.map

@@ -1 +1 @@
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package/dist/report.js

@@ -4,7 +4,8 @@
 import * as fs from 'node:fs/promises';
 import * as nodePath from 'node:path';
 import { computeFingerprint } from './baseline.js';
-import { snippet } from './evidence.js';
+import { writeTargetWithinRoot } from './path-containment.js';
+import { snippet, visibleText } from './evidence.js';
 const SEVERITY_LABEL = {
     critical: 'CRITICAL',
     high: 'HIGH',
@@ -150,6 +151,19 @@ function sortedIssues(issues) {
         return a.id.localeCompare(b.id);
     });
 }
+/**
+ * Render `text` as a markdown inline code span that cannot be broken out of: the
+ * fence is one backtick longer than the longest backtick run inside, and every
+ * invisible/control/format character is shown as `<U+XXXX>` (visibleText).
+ * Plain paths render exactly as a single-backtick span.
+ */
+export function inlineCode(text) {
+    const safe = visibleText(text);
+    const longestRun = Math.max(0, ...(safe.match(/`+/g) ?? []).map((run) => run.length));
+    const fence = '`'.repeat(longestRun + 1);
+    const pad = safe.startsWith('`') || safe.endsWith('`') ? ' ' : '';
+    return `${fence}${pad}${safe}${pad}${fence}`;
+}
 function renderIssue(issue, idx, rel) {
     const emoji = SEVERITY_EMOJI[issue.severity];
     const label = SEVERITY_LABEL[issue.severity];
@@ -165,7 +179,7 @@ function renderIssue(issue, idx, rel) {
     // Always show affected files (canonical list)
     if (issue.filePaths.length > 0) {
         for (const fp of issue.filePaths) {
-            lines.push(`**File:** \`${rel(fp)}\``);
+            lines.push(`**File:** ${inlineCode(rel(fp))}`);
         }
         lines.push('');
     }
@@ -174,15 +188,18 @@ function renderIssue(issue, idx, rel) {
     if (withLines.length > 0) {
         for (const loc of withLines) {
             const range = loc.endLine !== undefined ? `L${loc.startLine}–L${loc.endLine}` : `L${loc.startLine}`;
-            lines.push(`**Location:** \`${rel(loc.filePath)}\` ${range}`);
+            lines.push(`**Location:** ${inlineCode(rel(loc.filePath))} ${range}`);
         }
         lines.push('');
     }
     if (issue.evidence.length > 0) {
         lines.push('**Evidence:**');
+        // Skill supply-chain evidence quotes third-party content verbatim; render
+        // it as inert inline code so its markdown/HTML never renders in the report.
+        const untrusted = issue.tags?.[0] === 'skill-supply-chain';
         for (const ev of issue.evidence) {
             // Evidence items are often normalised section blobs — 100 chars is enough.
-            lines.push(`- ${snippet(ev, 100)}`);
+            lines.push(`- ${untrusted ? inlineCode(snippet(ev, 160)) : snippet(ev, 100)}`);
         }
         lines.push('');
     }
@@ -209,7 +226,8 @@ export function generateMarkdownReport(report) {
     lines.push(`**Generated:** ${generatedAt}`);
     lines.push(`**Repo:** \`${repoPath}\``);
     lines.push(`**Project type:** ${projectType}`);
-    lines.push(`**Files scanned:** ${filesScanned.length}`);
+    // Symlink aliases are listed below but are not separate files: count the real ones.
+    lines.push(`**Files scanned:** ${filesScanned.filter((f) => f.aliasOf === undefined).length}`);
     if (report.metrics) {
         lines.push(`**Estimated instruction tokens:** ${report.metrics.estimatedInstructionTokens} (always-loaded)`);
         if (report.metrics.estimatedOnDemandTokens) {
@@ -333,7 +351,9 @@ export function generateMarkdownReport(report) {
         lines.push('');
         const shown = filesScanned.slice(0, FILES_SCANNED_CAP);
         for (const f of shown) {
-            lines.push(`- \`${rel(f.path)}\` (${f.fileType}, ${f.lineCount} lines, ~${f.estimatedTokens} tokens)`);
+            lines.push(f.aliasOf !== undefined
+                ? `- \`${rel(f.path)}\` (symlink to \`${f.aliasOf}\`)`
+                : `- \`${rel(f.path)}\` (${f.fileType}, ${f.lineCount} lines, ~${f.estimatedTokens} tokens)`);
         }
         const overflow = filesScanned.length - shown.length;
         if (overflow > 0) {
@@ -383,11 +403,13 @@ export function generateJsonReport(report, pretty = true) {
             })),
         })),
         filesScanned: report.filesScanned.map((f) => ({
-            path: rel(f.path),
+            // Forward slashes, like `aliasOf` (a repo-relative POSIX path), on every OS.
+            path: rel(f.path).replace(/\\/g, '/'),
             fileType: f.fileType,
             lineCount: f.lineCount,
             charCount: f.charCount,
             estimatedTokens: f.estimatedTokens,
+            ...(f.aliasOf !== undefined ? { aliasOf: f.aliasOf } : {}),
         })),
         ...(report.suppressedIssues && report.suppressedIssues.length > 0
             ? {
@@ -516,6 +538,13 @@ export async function writeReport(report, options = {}) {
     const outputDir = nodePath.join(report.repoPath, '.promptci');
     const resolvedMd = options.mdPath ?? nodePath.join(outputDir, 'latest.md');
     const resolvedJson = options.jsonPath ?? nodePath.join(outputDir, 'report.json');
+    // A `.promptci` (or `latest.md`) committed as a link that leaves the repo must not
+    // redirect these writes: mirror of the read policy. An explicit path outside the repo is allowed.
+    for (const target of [outputDir, resolvedMd, resolvedJson, nodePath.join(outputDir, 'history')]) {
+        if (!writeTargetWithinRoot(report.repoPath, target)) {
+            throw new Error(`Refusing to write the report: ${target} resolves outside the repository through a symlink.`);
+        }
+    }
     await fs.mkdir(nodePath.dirname(resolvedMd), { recursive: true });
     await fs.mkdir(nodePath.dirname(resolvedJson), { recursive: true });
     // Load previous report and history index to compute trend