@probelabs/probe 0.6.0-rc259 → 0.6.0-rc260

package/build/agent/bashCommandUtils.js

@@ -127,6 +127,8 @@ export function parseSimpleCommand(command) {
     /&&/,           // Logical AND
     /\|\|/,         // Logical OR
     /(?<!\\);/,     // Command separator (but not escaped \;)
+    /\n/,           // Newline command separator (multi-line commands)
+    /\r/,           // Carriage return (CRLF line endings)
     /&$/,           // Background execution
     /\$\(/,         // Command substitution $()
     /`/,            // Command substitution ``
@@ -260,6 +262,7 @@ export function isComplexPattern(pattern) {
     /&&/,           // Logical AND
     /\|\|/,         // Logical OR
     /;/,            // Command separator
+    /\n/,           // Newline command separator
     /&$/,           // Background execution
     /\$\(/,         // Command substitution $()
     /`/,            // Command substitution ``

package/build/agent/bashPermissions.js

@@ -402,6 +402,29 @@ export class BashPermissionChecker {
           i++;
           continue;
         }
+        // Check for newline (command separator in multi-line scripts)
+        // Also handle \r\n (CRLF) line endings
+        if (char === '\n' || (char === '\r' && nextChar === '\n')) {
+          if (current.trim()) {
+            components.push(current.trim());
+          }
+          current = '';
+          if (char === '\r') {
+            i += 2; // Skip \r\n
+          } else {
+            i++;
+          }
+          continue;
+        }
+        if (char === '\r') {
+          // Bare \r without \n
+          if (current.trim()) {
+            components.push(current.trim());
+          }
+          current = '';
+          i++;
+          continue;
+        }
       }
 
       current += char;

package/build/agent/index.js

@@ -12238,6 +12238,10 @@ function parseSimpleCommand(command) {
     // Logical OR
     /(?<!\\);/,
     // Command separator (but not escaped \;)
+    /\n/,
+    // Newline command separator (multi-line commands)
+    /\r/,
+    // Carriage return (CRLF line endings)
     /&$/,
     // Background execution
     /\$\(/,
@@ -12344,6 +12348,8 @@ function isComplexPattern(pattern) {
     // Logical OR
     /;/,
     // Command separator
+    /\n/,
+    // Newline command separator
     /&$/,
     // Background execution
     /\$\(/,
@@ -12716,6 +12722,26 @@ var init_bashPermissions = __esm({
               i++;
               continue;
             }
+            if (char === "\n" || char === "\r" && nextChar === "\n") {
+              if (current2.trim()) {
+                components.push(current2.trim());
+              }
+              current2 = "";
+              if (char === "\r") {
+                i += 2;
+              } else {
+                i++;
+              }
+              continue;
+            }
+            if (char === "\r") {
+              if (current2.trim()) {
+                components.push(current2.trim());
+              }
+              current2 = "";
+              i++;
+              continue;
+            }
           }
           current2 += char;
           i++;
@@ -24794,7 +24820,11 @@ var init_esm3 = __esm({
       #matchGlobstar(file, pattern, partial, fileIndex, patternIndex) {
         const firstgs = pattern.indexOf(GLOBSTAR, patternIndex);
         const lastgs = pattern.lastIndexOf(GLOBSTAR);
-        const [head2, body, tail] = [
+        const [head2, body, tail] = partial ? [
+          pattern.slice(patternIndex, firstgs),
+          pattern.slice(firstgs + 1),
+          []
+        ] : [
           pattern.slice(patternIndex, firstgs),
           pattern.slice(firstgs + 1, lastgs),
           pattern.slice(lastgs + 1)
@@ -24831,7 +24861,7 @@ var init_esm3 = __esm({
               return false;
             }
           }
-          return sawSome;
+          return partial || sawSome;
         }
         const bodySegments = [[[], 0]];
         let currentBody = bodySegments[0];
@@ -24880,7 +24910,7 @@ var init_esm3 = __esm({
           }
           fileIndex++;
         }
-        return null;
+        return partial || null;
       }
       #matchOne(file, pattern, partial, fileIndex, patternIndex) {
         let fi;
@@ -70110,6 +70140,15 @@ function normalizeJsonQuotes(str) {
   }
   return result;
 }
+function isCodeBlockEmbeddedInDocument(text, match2) {
+  const beforeBlock = text.substring(0, match2.index).trim();
+  const afterBlock = text.substring(match2.index + match2[0].length).trim();
+  const hasMarkdownHeadings = /^#{1,6}\s/m.test(beforeBlock) || /^#{1,6}\s/m.test(afterBlock);
+  if (hasMarkdownHeadings) {
+    return true;
+  }
+  return false;
+}
 function cleanSchemaResponse(response) {
   if (!response || typeof response !== "string") {
     return response;
@@ -70129,11 +70168,11 @@ function cleanSchemaResponse(response) {
     return cleanSchemaResponse(innerContent);
   }
   const jsonBlockMatch = trimmed.match(/```json\s*\n([\s\S]*?)\n```/);
-  if (jsonBlockMatch) {
+  if (jsonBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, jsonBlockMatch)) {
     return normalizeJsonQuotes(jsonBlockMatch[1].trim());
   }
   const anyBlockMatch = trimmed.match(/```\s*\n([{\[][\s\S]*?[}\]])\s*```/);
-  if (anyBlockMatch) {
+  if (anyBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, anyBlockMatch)) {
     return normalizeJsonQuotes(anyBlockMatch[1].trim());
   }
   const codeBlockPatterns = [
@@ -70142,7 +70181,7 @@ function cleanSchemaResponse(response) {
   ];
   for (const pattern of codeBlockPatterns) {
     const match2 = trimmed.match(pattern);
-    if (match2) {
+    if (match2 && !isCodeBlockEmbeddedInDocument(trimmed, match2)) {
       return normalizeJsonQuotes(match2[1].trim());
     }
   }
@@ -70153,7 +70192,7 @@ function cleanSchemaResponse(response) {
   }
   const codeBlockStartPattern = /```(?:json)?\s*\n?\s*([{\[])/;
   const codeBlockMatch = trimmed.match(codeBlockStartPattern);
-  if (codeBlockMatch) {
+  if (codeBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, codeBlockMatch)) {
     const startIndex = codeBlockMatch.index + codeBlockMatch[0].length - 1;
     const openChar = codeBlockMatch[1];
     const closeChar = openChar === "{" ? "}" : "]";

package/build/agent/schemaUtils.js

@@ -266,6 +266,36 @@ function normalizeJsonQuotes(str) {
   return result;
 }
 
+/**
+ * Check if a code block is embedded within a structured markdown document.
+ * Used to avoid extracting embedded JSON examples from markdown text.
+ * Issue #456: attempt_completion results containing markdown with JSON code block
+ * documentation examples were having the examples extracted as structured output.
+ *
+ * Normal AI behavior: AI wraps JSON answer in a code block with brief explanation text.
+ * Issue #456: AI returns a markdown document that contains JSON code blocks as examples.
+ *
+ * We distinguish these by checking if the surrounding text contains markdown structural
+ * elements (headings) which indicate a document rather than a brief explanation.
+ *
+ * @param {string} text - The full trimmed text
+ * @param {RegExpMatchArray} match - The regex match for the code block
+ * @returns {boolean} - true if the code block is embedded in a markdown document
+ */
+function isCodeBlockEmbeddedInDocument(text, match) {
+  const beforeBlock = text.substring(0, match.index).trim();
+  const afterBlock = text.substring(match.index + match[0].length).trim();
+
+  // Check if surrounding text contains markdown headings (lines starting with #)
+  // This is a strong signal that the content is a structured document, not just explanation text
+  const hasMarkdownHeadings = /^#{1,6}\s/m.test(beforeBlock) || /^#{1,6}\s/m.test(afterBlock);
+  if (hasMarkdownHeadings) {
+    return true;
+  }
+
+  return false;
+}
+
 /**
  * Clean AI response by extracting JSON content when response contains JSON
  * Only processes responses that contain JSON structures { or [
@@ -311,15 +341,20 @@ export function cleanSchemaResponse(response) {
   }
 
   // First, look for JSON after code block markers - similar to mermaid extraction
+  // Only extract from code blocks when they are the primary content (not embedded examples in markdown).
+  // Issue #456: When attempt_completion result contains markdown with embedded JSON code blocks
+  // as documentation examples, extracting those blocks produces wrong structured output.
+  // We check that there's no significant text content outside the code block.
+
   // Try with json language specifier
   const jsonBlockMatch = trimmed.match(/```json\s*\n([\s\S]*?)\n```/);
-  if (jsonBlockMatch) {
+  if (jsonBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, jsonBlockMatch)) {
     return normalizeJsonQuotes(jsonBlockMatch[1].trim());
   }
 
   // Try any code block with JSON content
   const anyBlockMatch = trimmed.match(/```\s*\n([{\[][\s\S]*?[}\]])\s*```/);
-  if (anyBlockMatch) {
+  if (anyBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, anyBlockMatch)) {
     return normalizeJsonQuotes(anyBlockMatch[1].trim());
   }
 
@@ -331,7 +366,7 @@ export function cleanSchemaResponse(response) {
 
   for (const pattern of codeBlockPatterns) {
     const match = trimmed.match(pattern);
-    if (match) {
+    if (match && !isCodeBlockEmbeddedInDocument(trimmed, match)) {
       return normalizeJsonQuotes(match[1].trim());
     }
   }
@@ -345,10 +380,11 @@ export function cleanSchemaResponse(response) {
   }
 
   // Look for code block start followed immediately by JSON
+  // Only extract if the code block is not embedded in a structured markdown document
   const codeBlockStartPattern = /```(?:json)?\s*\n?\s*([{\[])/;
   const codeBlockMatch = trimmed.match(codeBlockStartPattern);
 
-  if (codeBlockMatch) {
+  if (codeBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, codeBlockMatch)) {
     const startIndex = codeBlockMatch.index + codeBlockMatch[0].length - 1; // Position of the bracket
 
     // Find the matching closing bracket

package/cjs/agent/ProbeAgent.cjs

@@ -17506,7 +17506,7 @@ var require_package2 = __commonJS({
     module2.exports = {
       name: "@aws-sdk/client-bedrock-runtime",
       description: "AWS SDK for JavaScript Bedrock Runtime Client for Node.js, Browser and React Native",
-      version: "3.997.0",
+      version: "3.998.0",
       scripts: {
         build: "concurrently 'yarn:build:types' 'yarn:build:es' && yarn build:cjs",
         "build:cjs": "node ../../scripts/compilation/inline client-bedrock-runtime",
@@ -17526,49 +17526,49 @@ var require_package2 = __commonJS({
       dependencies: {
         "@aws-crypto/sha256-browser": "5.2.0",
         "@aws-crypto/sha256-js": "5.2.0",
-        "@aws-sdk/core": "^3.973.13",
-        "@aws-sdk/credential-provider-node": "^3.972.12",
-        "@aws-sdk/eventstream-handler-node": "^3.972.7",
-        "@aws-sdk/middleware-eventstream": "^3.972.4",
-        "@aws-sdk/middleware-host-header": "^3.972.4",
-        "@aws-sdk/middleware-logger": "^3.972.4",
-        "@aws-sdk/middleware-recursion-detection": "^3.972.4",
-        "@aws-sdk/middleware-user-agent": "^3.972.13",
-        "@aws-sdk/middleware-websocket": "^3.972.8",
-        "@aws-sdk/region-config-resolver": "^3.972.4",
-        "@aws-sdk/token-providers": "3.997.0",
-        "@aws-sdk/types": "^3.973.2",
-        "@aws-sdk/util-endpoints": "^3.996.1",
-        "@aws-sdk/util-user-agent-browser": "^3.972.4",
-        "@aws-sdk/util-user-agent-node": "^3.972.12",
-        "@smithy/config-resolver": "^4.4.7",
-        "@smithy/core": "^3.23.4",
-        "@smithy/eventstream-serde-browser": "^4.2.9",
-        "@smithy/eventstream-serde-config-resolver": "^4.3.9",
-        "@smithy/eventstream-serde-node": "^4.2.9",
-        "@smithy/fetch-http-handler": "^5.3.10",
-        "@smithy/hash-node": "^4.2.9",
-        "@smithy/invalid-dependency": "^4.2.9",
-        "@smithy/middleware-content-length": "^4.2.9",
-        "@smithy/middleware-endpoint": "^4.4.18",
-        "@smithy/middleware-retry": "^4.4.35",
-        "@smithy/middleware-serde": "^4.2.10",
-        "@smithy/middleware-stack": "^4.2.9",
-        "@smithy/node-config-provider": "^4.3.9",
-        "@smithy/node-http-handler": "^4.4.11",
-        "@smithy/protocol-http": "^5.3.9",
-        "@smithy/smithy-client": "^4.11.7",
-        "@smithy/types": "^4.12.1",
-        "@smithy/url-parser": "^4.2.9",
+        "@aws-sdk/core": "^3.973.14",
+        "@aws-sdk/credential-provider-node": "^3.972.13",
+        "@aws-sdk/eventstream-handler-node": "^3.972.8",
+        "@aws-sdk/middleware-eventstream": "^3.972.5",
+        "@aws-sdk/middleware-host-header": "^3.972.5",
+        "@aws-sdk/middleware-logger": "^3.972.5",
+        "@aws-sdk/middleware-recursion-detection": "^3.972.5",
+        "@aws-sdk/middleware-user-agent": "^3.972.14",
+        "@aws-sdk/middleware-websocket": "^3.972.9",
+        "@aws-sdk/region-config-resolver": "^3.972.5",
+        "@aws-sdk/token-providers": "3.998.0",
+        "@aws-sdk/types": "^3.973.3",
+        "@aws-sdk/util-endpoints": "^3.996.2",
+        "@aws-sdk/util-user-agent-browser": "^3.972.5",
+        "@aws-sdk/util-user-agent-node": "^3.972.13",
+        "@smithy/config-resolver": "^4.4.9",
+        "@smithy/core": "^3.23.6",
+        "@smithy/eventstream-serde-browser": "^4.2.10",
+        "@smithy/eventstream-serde-config-resolver": "^4.3.10",
+        "@smithy/eventstream-serde-node": "^4.2.10",
+        "@smithy/fetch-http-handler": "^5.3.11",
+        "@smithy/hash-node": "^4.2.10",
+        "@smithy/invalid-dependency": "^4.2.10",
+        "@smithy/middleware-content-length": "^4.2.10",
+        "@smithy/middleware-endpoint": "^4.4.20",
+        "@smithy/middleware-retry": "^4.4.37",
+        "@smithy/middleware-serde": "^4.2.11",
+        "@smithy/middleware-stack": "^4.2.10",
+        "@smithy/node-config-provider": "^4.3.10",
+        "@smithy/node-http-handler": "^4.4.12",
+        "@smithy/protocol-http": "^5.3.10",
+        "@smithy/smithy-client": "^4.12.0",
+        "@smithy/types": "^4.13.0",
+        "@smithy/url-parser": "^4.2.10",
         "@smithy/util-base64": "^4.3.1",
         "@smithy/util-body-length-browser": "^4.2.1",
         "@smithy/util-body-length-node": "^4.2.2",
-        "@smithy/util-defaults-mode-browser": "^4.3.34",
-        "@smithy/util-defaults-mode-node": "^4.2.37",
-        "@smithy/util-endpoints": "^3.2.9",
-        "@smithy/util-middleware": "^4.2.9",
-        "@smithy/util-retry": "^4.2.9",
-        "@smithy/util-stream": "^4.5.14",
+        "@smithy/util-defaults-mode-browser": "^4.3.36",
+        "@smithy/util-defaults-mode-node": "^4.2.39",
+        "@smithy/util-endpoints": "^3.3.1",
+        "@smithy/util-middleware": "^4.2.10",
+        "@smithy/util-retry": "^4.2.10",
+        "@smithy/util-stream": "^4.5.15",
         "@smithy/util-utf8": "^4.2.1",
         tslib: "^2.6.2"
       },
@@ -18287,7 +18287,7 @@ var init_package = __esm({
   "node_modules/@aws-sdk/nested-clients/package.json"() {
     package_default = {
       name: "@aws-sdk/nested-clients",
-      version: "3.996.1",
+      version: "3.996.2",
       description: "Nested clients for AWS SDK packages.",
       main: "./dist-cjs/index.js",
       module: "./dist-es/index.js",
@@ -18316,40 +18316,40 @@ var init_package = __esm({
       dependencies: {
         "@aws-crypto/sha256-browser": "5.2.0",
         "@aws-crypto/sha256-js": "5.2.0",
-        "@aws-sdk/core": "^3.973.13",
-        "@aws-sdk/middleware-host-header": "^3.972.4",
-        "@aws-sdk/middleware-logger": "^3.972.4",
-        "@aws-sdk/middleware-recursion-detection": "^3.972.4",
-        "@aws-sdk/middleware-user-agent": "^3.972.13",
-        "@aws-sdk/region-config-resolver": "^3.972.4",
-        "@aws-sdk/types": "^3.973.2",
-        "@aws-sdk/util-endpoints": "^3.996.1",
-        "@aws-sdk/util-user-agent-browser": "^3.972.4",
-        "@aws-sdk/util-user-agent-node": "^3.972.12",
-        "@smithy/config-resolver": "^4.4.7",
-        "@smithy/core": "^3.23.4",
-        "@smithy/fetch-http-handler": "^5.3.10",
-        "@smithy/hash-node": "^4.2.9",
-        "@smithy/invalid-dependency": "^4.2.9",
-        "@smithy/middleware-content-length": "^4.2.9",
-        "@smithy/middleware-endpoint": "^4.4.18",
-        "@smithy/middleware-retry": "^4.4.35",
-        "@smithy/middleware-serde": "^4.2.10",
-        "@smithy/middleware-stack": "^4.2.9",
-        "@smithy/node-config-provider": "^4.3.9",
-        "@smithy/node-http-handler": "^4.4.11",
-        "@smithy/protocol-http": "^5.3.9",
-        "@smithy/smithy-client": "^4.11.7",
-        "@smithy/types": "^4.12.1",
-        "@smithy/url-parser": "^4.2.9",
+        "@aws-sdk/core": "^3.973.14",
+        "@aws-sdk/middleware-host-header": "^3.972.5",
+        "@aws-sdk/middleware-logger": "^3.972.5",
+        "@aws-sdk/middleware-recursion-detection": "^3.972.5",
+        "@aws-sdk/middleware-user-agent": "^3.972.14",
+        "@aws-sdk/region-config-resolver": "^3.972.5",
+        "@aws-sdk/types": "^3.973.3",
+        "@aws-sdk/util-endpoints": "^3.996.2",
+        "@aws-sdk/util-user-agent-browser": "^3.972.5",
+        "@aws-sdk/util-user-agent-node": "^3.972.13",
+        "@smithy/config-resolver": "^4.4.9",
+        "@smithy/core": "^3.23.6",
+        "@smithy/fetch-http-handler": "^5.3.11",
+        "@smithy/hash-node": "^4.2.10",
+        "@smithy/invalid-dependency": "^4.2.10",
+        "@smithy/middleware-content-length": "^4.2.10",
+        "@smithy/middleware-endpoint": "^4.4.20",
+        "@smithy/middleware-retry": "^4.4.37",
+        "@smithy/middleware-serde": "^4.2.11",
+        "@smithy/middleware-stack": "^4.2.10",
+        "@smithy/node-config-provider": "^4.3.10",
+        "@smithy/node-http-handler": "^4.4.12",
+        "@smithy/protocol-http": "^5.3.10",
+        "@smithy/smithy-client": "^4.12.0",
+        "@smithy/types": "^4.13.0",
+        "@smithy/url-parser": "^4.2.10",
         "@smithy/util-base64": "^4.3.1",
         "@smithy/util-body-length-browser": "^4.2.1",
         "@smithy/util-body-length-node": "^4.2.2",
-        "@smithy/util-defaults-mode-browser": "^4.3.34",
-        "@smithy/util-defaults-mode-node": "^4.2.37",
-        "@smithy/util-endpoints": "^3.2.9",
-        "@smithy/util-middleware": "^4.2.9",
-        "@smithy/util-retry": "^4.2.9",
+        "@smithy/util-defaults-mode-browser": "^4.3.36",
+        "@smithy/util-defaults-mode-node": "^4.2.39",
+        "@smithy/util-endpoints": "^3.3.1",
+        "@smithy/util-middleware": "^4.2.10",
+        "@smithy/util-retry": "^4.2.10",
         "@smithy/util-utf8": "^4.2.1",
         tslib: "^2.6.2"
       },
@@ -39519,6 +39519,10 @@ function parseSimpleCommand(command) {
     // Logical OR
     /(?<!\\);/,
     // Command separator (but not escaped \;)
+    /\n/,
+    // Newline command separator (multi-line commands)
+    /\r/,
+    // Carriage return (CRLF line endings)
     /&$/,
     // Background execution
     /\$\(/,
@@ -39625,6 +39629,8 @@ function isComplexPattern(pattern) {
     // Logical OR
     /;/,
     // Command separator
+    /\n/,
+    // Newline command separator
     /&$/,
     // Background execution
     /\$\(/,
@@ -39997,6 +40003,26 @@ var init_bashPermissions = __esm({
               i5++;
               continue;
             }
+            if (char === "\n" || char === "\r" && nextChar === "\n") {
+              if (current2.trim()) {
+                components.push(current2.trim());
+              }
+              current2 = "";
+              if (char === "\r") {
+                i5 += 2;
+              } else {
+                i5++;
+              }
+              continue;
+            }
+            if (char === "\r") {
+              if (current2.trim()) {
+                components.push(current2.trim());
+              }
+              current2 = "";
+              i5++;
+              continue;
+            }
           }
           current2 += char;
           i5++;
@@ -52076,7 +52102,11 @@ var init_esm3 = __esm({
       #matchGlobstar(file, pattern, partial, fileIndex, patternIndex) {
         const firstgs = pattern.indexOf(GLOBSTAR, patternIndex);
         const lastgs = pattern.lastIndexOf(GLOBSTAR);
-        const [head2, body, tail] = [
+        const [head2, body, tail] = partial ? [
+          pattern.slice(patternIndex, firstgs),
+          pattern.slice(firstgs + 1),
+          []
+        ] : [
           pattern.slice(patternIndex, firstgs),
           pattern.slice(firstgs + 1, lastgs),
           pattern.slice(lastgs + 1)
@@ -52113,7 +52143,7 @@ var init_esm3 = __esm({
               return false;
             }
           }
-          return sawSome;
+          return partial || sawSome;
         }
         const bodySegments = [[[], 0]];
         let currentBody = bodySegments[0];
@@ -52162,7 +52192,7 @@ var init_esm3 = __esm({
           }
           fileIndex++;
         }
-        return null;
+        return partial || null;
       }
       #matchOne(file, pattern, partial, fileIndex, patternIndex) {
         let fi;
@@ -96958,6 +96988,15 @@ function normalizeJsonQuotes(str) {
   }
   return result;
 }
+function isCodeBlockEmbeddedInDocument(text, match2) {
+  const beforeBlock = text.substring(0, match2.index).trim();
+  const afterBlock = text.substring(match2.index + match2[0].length).trim();
+  const hasMarkdownHeadings = /^#{1,6}\s/m.test(beforeBlock) || /^#{1,6}\s/m.test(afterBlock);
+  if (hasMarkdownHeadings) {
+    return true;
+  }
+  return false;
+}
 function cleanSchemaResponse(response) {
   if (!response || typeof response !== "string") {
     return response;
@@ -96977,11 +97016,11 @@ function cleanSchemaResponse(response) {
     return cleanSchemaResponse(innerContent);
   }
   const jsonBlockMatch = trimmed.match(/```json\s*\n([\s\S]*?)\n```/);
-  if (jsonBlockMatch) {
+  if (jsonBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, jsonBlockMatch)) {
     return normalizeJsonQuotes(jsonBlockMatch[1].trim());
   }
   const anyBlockMatch = trimmed.match(/```\s*\n([{\[][\s\S]*?[}\]])\s*```/);
-  if (anyBlockMatch) {
+  if (anyBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, anyBlockMatch)) {
     return normalizeJsonQuotes(anyBlockMatch[1].trim());
   }
   const codeBlockPatterns = [
@@ -96990,7 +97029,7 @@ function cleanSchemaResponse(response) {
   ];
   for (const pattern of codeBlockPatterns) {
     const match2 = trimmed.match(pattern);
-    if (match2) {
+    if (match2 && !isCodeBlockEmbeddedInDocument(trimmed, match2)) {
       return normalizeJsonQuotes(match2[1].trim());
     }
   }
@@ -97001,7 +97040,7 @@ function cleanSchemaResponse(response) {
   }
   const codeBlockStartPattern = /```(?:json)?\s*\n?\s*([{\[])/;
   const codeBlockMatch = trimmed.match(codeBlockStartPattern);
-  if (codeBlockMatch) {
+  if (codeBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, codeBlockMatch)) {
     const startIndex = codeBlockMatch.index + codeBlockMatch[0].length - 1;
     const openChar = codeBlockMatch[1];
     const closeChar = openChar === "{" ? "}" : "]";

package/cjs/index.cjs

@@ -19363,7 +19363,7 @@ var require_package2 = __commonJS({
     module2.exports = {
       name: "@aws-sdk/client-bedrock-runtime",
       description: "AWS SDK for JavaScript Bedrock Runtime Client for Node.js, Browser and React Native",
-      version: "3.997.0",
+      version: "3.998.0",
       scripts: {
         build: "concurrently 'yarn:build:types' 'yarn:build:es' && yarn build:cjs",
         "build:cjs": "node ../../scripts/compilation/inline client-bedrock-runtime",
@@ -19383,49 +19383,49 @@ var require_package2 = __commonJS({
       dependencies: {
         "@aws-crypto/sha256-browser": "5.2.0",
         "@aws-crypto/sha256-js": "5.2.0",
-        "@aws-sdk/core": "^3.973.13",
-        "@aws-sdk/credential-provider-node": "^3.972.12",
-        "@aws-sdk/eventstream-handler-node": "^3.972.7",
-        "@aws-sdk/middleware-eventstream": "^3.972.4",
-        "@aws-sdk/middleware-host-header": "^3.972.4",
-        "@aws-sdk/middleware-logger": "^3.972.4",
-        "@aws-sdk/middleware-recursion-detection": "^3.972.4",
-        "@aws-sdk/middleware-user-agent": "^3.972.13",
-        "@aws-sdk/middleware-websocket": "^3.972.8",
-        "@aws-sdk/region-config-resolver": "^3.972.4",
-        "@aws-sdk/token-providers": "3.997.0",
-        "@aws-sdk/types": "^3.973.2",
-        "@aws-sdk/util-endpoints": "^3.996.1",
-        "@aws-sdk/util-user-agent-browser": "^3.972.4",
-        "@aws-sdk/util-user-agent-node": "^3.972.12",
-        "@smithy/config-resolver": "^4.4.7",
-        "@smithy/core": "^3.23.4",
-        "@smithy/eventstream-serde-browser": "^4.2.9",
-        "@smithy/eventstream-serde-config-resolver": "^4.3.9",
-        "@smithy/eventstream-serde-node": "^4.2.9",
-        "@smithy/fetch-http-handler": "^5.3.10",
-        "@smithy/hash-node": "^4.2.9",
-        "@smithy/invalid-dependency": "^4.2.9",
-        "@smithy/middleware-content-length": "^4.2.9",
-        "@smithy/middleware-endpoint": "^4.4.18",
-        "@smithy/middleware-retry": "^4.4.35",
-        "@smithy/middleware-serde": "^4.2.10",
-        "@smithy/middleware-stack": "^4.2.9",
-        "@smithy/node-config-provider": "^4.3.9",
-        "@smithy/node-http-handler": "^4.4.11",
-        "@smithy/protocol-http": "^5.3.9",
-        "@smithy/smithy-client": "^4.11.7",
-        "@smithy/types": "^4.12.1",
-        "@smithy/url-parser": "^4.2.9",
+        "@aws-sdk/core": "^3.973.14",
+        "@aws-sdk/credential-provider-node": "^3.972.13",
+        "@aws-sdk/eventstream-handler-node": "^3.972.8",
+        "@aws-sdk/middleware-eventstream": "^3.972.5",
+        "@aws-sdk/middleware-host-header": "^3.972.5",
+        "@aws-sdk/middleware-logger": "^3.972.5",
+        "@aws-sdk/middleware-recursion-detection": "^3.972.5",
+        "@aws-sdk/middleware-user-agent": "^3.972.14",
+        "@aws-sdk/middleware-websocket": "^3.972.9",
+        "@aws-sdk/region-config-resolver": "^3.972.5",
+        "@aws-sdk/token-providers": "3.998.0",
+        "@aws-sdk/types": "^3.973.3",
+        "@aws-sdk/util-endpoints": "^3.996.2",
+        "@aws-sdk/util-user-agent-browser": "^3.972.5",
+        "@aws-sdk/util-user-agent-node": "^3.972.13",
+        "@smithy/config-resolver": "^4.4.9",
+        "@smithy/core": "^3.23.6",
+        "@smithy/eventstream-serde-browser": "^4.2.10",
+        "@smithy/eventstream-serde-config-resolver": "^4.3.10",
+        "@smithy/eventstream-serde-node": "^4.2.10",
+        "@smithy/fetch-http-handler": "^5.3.11",
+        "@smithy/hash-node": "^4.2.10",
+        "@smithy/invalid-dependency": "^4.2.10",
+        "@smithy/middleware-content-length": "^4.2.10",
+        "@smithy/middleware-endpoint": "^4.4.20",
+        "@smithy/middleware-retry": "^4.4.37",
+        "@smithy/middleware-serde": "^4.2.11",
+        "@smithy/middleware-stack": "^4.2.10",
+        "@smithy/node-config-provider": "^4.3.10",
+        "@smithy/node-http-handler": "^4.4.12",
+        "@smithy/protocol-http": "^5.3.10",
+        "@smithy/smithy-client": "^4.12.0",
+        "@smithy/types": "^4.13.0",
+        "@smithy/url-parser": "^4.2.10",
         "@smithy/util-base64": "^4.3.1",
         "@smithy/util-body-length-browser": "^4.2.1",
         "@smithy/util-body-length-node": "^4.2.2",
-        "@smithy/util-defaults-mode-browser": "^4.3.34",
-        "@smithy/util-defaults-mode-node": "^4.2.37",
-        "@smithy/util-endpoints": "^3.2.9",
-        "@smithy/util-middleware": "^4.2.9",
-        "@smithy/util-retry": "^4.2.9",
-        "@smithy/util-stream": "^4.5.14",
+        "@smithy/util-defaults-mode-browser": "^4.3.36",
+        "@smithy/util-defaults-mode-node": "^4.2.39",
+        "@smithy/util-endpoints": "^3.3.1",
+        "@smithy/util-middleware": "^4.2.10",
+        "@smithy/util-retry": "^4.2.10",
+        "@smithy/util-stream": "^4.5.15",
         "@smithy/util-utf8": "^4.2.1",
         tslib: "^2.6.2"
       },
@@ -20144,7 +20144,7 @@ var init_package = __esm({
   "node_modules/@aws-sdk/nested-clients/package.json"() {
     package_default = {
       name: "@aws-sdk/nested-clients",
-      version: "3.996.1",
+      version: "3.996.2",
       description: "Nested clients for AWS SDK packages.",
       main: "./dist-cjs/index.js",
       module: "./dist-es/index.js",
@@ -20173,40 +20173,40 @@ var init_package = __esm({
       dependencies: {
         "@aws-crypto/sha256-browser": "5.2.0",
         "@aws-crypto/sha256-js": "5.2.0",
-        "@aws-sdk/core": "^3.973.13",
-        "@aws-sdk/middleware-host-header": "^3.972.4",
-        "@aws-sdk/middleware-logger": "^3.972.4",
-        "@aws-sdk/middleware-recursion-detection": "^3.972.4",
-        "@aws-sdk/middleware-user-agent": "^3.972.13",
-        "@aws-sdk/region-config-resolver": "^3.972.4",
-        "@aws-sdk/types": "^3.973.2",
-        "@aws-sdk/util-endpoints": "^3.996.1",
-        "@aws-sdk/util-user-agent-browser": "^3.972.4",
-        "@aws-sdk/util-user-agent-node": "^3.972.12",
-        "@smithy/config-resolver": "^4.4.7",
-        "@smithy/core": "^3.23.4",
-        "@smithy/fetch-http-handler": "^5.3.10",
-        "@smithy/hash-node": "^4.2.9",
-        "@smithy/invalid-dependency": "^4.2.9",
-        "@smithy/middleware-content-length": "^4.2.9",
-        "@smithy/middleware-endpoint": "^4.4.18",
-        "@smithy/middleware-retry": "^4.4.35",
-        "@smithy/middleware-serde": "^4.2.10",
-        "@smithy/middleware-stack": "^4.2.9",
-        "@smithy/node-config-provider": "^4.3.9",
-        "@smithy/node-http-handler": "^4.4.11",
-        "@smithy/protocol-http": "^5.3.9",
-        "@smithy/smithy-client": "^4.11.7",
-        "@smithy/types": "^4.12.1",
-        "@smithy/url-parser": "^4.2.9",
+        "@aws-sdk/core": "^3.973.14",
+        "@aws-sdk/middleware-host-header": "^3.972.5",
+        "@aws-sdk/middleware-logger": "^3.972.5",
+        "@aws-sdk/middleware-recursion-detection": "^3.972.5",
+        "@aws-sdk/middleware-user-agent": "^3.972.14",
+        "@aws-sdk/region-config-resolver": "^3.972.5",
+        "@aws-sdk/types": "^3.973.3",
+        "@aws-sdk/util-endpoints": "^3.996.2",
+        "@aws-sdk/util-user-agent-browser": "^3.972.5",
+        "@aws-sdk/util-user-agent-node": "^3.972.13",
+        "@smithy/config-resolver": "^4.4.9",
+        "@smithy/core": "^3.23.6",
+        "@smithy/fetch-http-handler": "^5.3.11",
+        "@smithy/hash-node": "^4.2.10",
+        "@smithy/invalid-dependency": "^4.2.10",
+        "@smithy/middleware-content-length": "^4.2.10",
+        "@smithy/middleware-endpoint": "^4.4.20",
+        "@smithy/middleware-retry": "^4.4.37",
+        "@smithy/middleware-serde": "^4.2.11",
+        "@smithy/middleware-stack": "^4.2.10",
+        "@smithy/node-config-provider": "^4.3.10",
+        "@smithy/node-http-handler": "^4.4.12",
+        "@smithy/protocol-http": "^5.3.10",
+        "@smithy/smithy-client": "^4.12.0",
+        "@smithy/types": "^4.13.0",
+        "@smithy/url-parser": "^4.2.10",
         "@smithy/util-base64": "^4.3.1",
         "@smithy/util-body-length-browser": "^4.2.1",
         "@smithy/util-body-length-node": "^4.2.2",
-        "@smithy/util-defaults-mode-browser": "^4.3.34",
-        "@smithy/util-defaults-mode-node": "^4.2.37",
-        "@smithy/util-endpoints": "^3.2.9",
-        "@smithy/util-middleware": "^4.2.9",
-        "@smithy/util-retry": "^4.2.9",
+        "@smithy/util-defaults-mode-browser": "^4.3.36",
+        "@smithy/util-defaults-mode-node": "^4.2.39",
+        "@smithy/util-endpoints": "^3.3.1",
+        "@smithy/util-middleware": "^4.2.10",
+        "@smithy/util-retry": "^4.2.10",
         "@smithy/util-utf8": "^4.2.1",
         tslib: "^2.6.2"
       },
@@ -40197,7 +40197,11 @@ var init_esm3 = __esm({
       #matchGlobstar(file, pattern, partial, fileIndex, patternIndex) {
         const firstgs = pattern.indexOf(GLOBSTAR, patternIndex);
         const lastgs = pattern.lastIndexOf(GLOBSTAR);
-        const [head2, body, tail] = [
+        const [head2, body, tail] = partial ? [
+          pattern.slice(patternIndex, firstgs),
+          pattern.slice(firstgs + 1),
+          []
+        ] : [
           pattern.slice(patternIndex, firstgs),
           pattern.slice(firstgs + 1, lastgs),
           pattern.slice(lastgs + 1)
@@ -40234,7 +40238,7 @@ var init_esm3 = __esm({
               return false;
             }
           }
-          return sawSome;
+          return partial || sawSome;
         }
         const bodySegments = [[[], 0]];
         let currentBody = bodySegments[0];
@@ -40283,7 +40287,7 @@ var init_esm3 = __esm({
           }
           fileIndex++;
         }
-        return null;
+        return partial || null;
       }
       #matchOne(file, pattern, partial, fileIndex, patternIndex) {
         let fi;
@@ -82767,6 +82771,15 @@ function normalizeJsonQuotes(str) {
   }
   return result;
 }
+function isCodeBlockEmbeddedInDocument(text, match2) {
+  const beforeBlock = text.substring(0, match2.index).trim();
+  const afterBlock = text.substring(match2.index + match2[0].length).trim();
+  const hasMarkdownHeadings = /^#{1,6}\s/m.test(beforeBlock) || /^#{1,6}\s/m.test(afterBlock);
+  if (hasMarkdownHeadings) {
+    return true;
+  }
+  return false;
+}
 function cleanSchemaResponse(response) {
   if (!response || typeof response !== "string") {
     return response;
@@ -82786,11 +82799,11 @@ function cleanSchemaResponse(response) {
     return cleanSchemaResponse(innerContent);
   }
   const jsonBlockMatch = trimmed.match(/```json\s*\n([\s\S]*?)\n```/);
-  if (jsonBlockMatch) {
+  if (jsonBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, jsonBlockMatch)) {
     return normalizeJsonQuotes(jsonBlockMatch[1].trim());
   }
   const anyBlockMatch = trimmed.match(/```\s*\n([{\[][\s\S]*?[}\]])\s*```/);
-  if (anyBlockMatch) {
+  if (anyBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, anyBlockMatch)) {
     return normalizeJsonQuotes(anyBlockMatch[1].trim());
   }
   const codeBlockPatterns = [
@@ -82799,7 +82812,7 @@ function cleanSchemaResponse(response) {
   ];
   for (const pattern of codeBlockPatterns) {
     const match2 = trimmed.match(pattern);
-    if (match2) {
+    if (match2 && !isCodeBlockEmbeddedInDocument(trimmed, match2)) {
       return normalizeJsonQuotes(match2[1].trim());
     }
   }
@@ -82810,7 +82823,7 @@ function cleanSchemaResponse(response) {
   }
   const codeBlockStartPattern = /```(?:json)?\s*\n?\s*([{\[])/;
   const codeBlockMatch = trimmed.match(codeBlockStartPattern);
-  if (codeBlockMatch) {
+  if (codeBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, codeBlockMatch)) {
     const startIndex = codeBlockMatch.index + codeBlockMatch[0].length - 1;
     const openChar = codeBlockMatch[1];
     const closeChar = openChar === "{" ? "}" : "]";
@@ -104508,6 +104521,10 @@ function parseSimpleCommand(command) {
     // Logical OR
     /(?<!\\);/,
     // Command separator (but not escaped \;)
+    /\n/,
+    // Newline command separator (multi-line commands)
+    /\r/,
+    // Carriage return (CRLF line endings)
     /&$/,
     // Background execution
     /\$\(/,
@@ -104614,6 +104631,8 @@ function isComplexPattern(pattern) {
     // Logical OR
     /;/,
     // Command separator
+    /\n/,
+    // Newline command separator
     /&$/,
     // Background execution
     /\$\(/,
@@ -104986,6 +105005,26 @@ var init_bashPermissions = __esm({
               i5++;
               continue;
             }
+            if (char === "\n" || char === "\r" && nextChar === "\n") {
+              if (current2.trim()) {
+                components.push(current2.trim());
+              }
+              current2 = "";
+              if (char === "\r") {
+                i5 += 2;
+              } else {
+                i5++;
+              }
+              continue;
+            }
+            if (char === "\r") {
+              if (current2.trim()) {
+                components.push(current2.trim());
+              }
+              current2 = "";
+              i5++;
+              continue;
+            }
           }
           current2 += char;
           i5++;

package/package.json

@@ -1,6 +1,6 @@
 {
   "name": "@probelabs/probe",
-  "version": "0.6.0-rc259",
+  "version": "0.6.0-rc260",
   "description": "Node.js wrapper for the probe code search tool",
   "main": "src/index.js",
   "module": "src/index.js",

package/src/agent/bashCommandUtils.js

@@ -127,6 +127,8 @@ export function parseSimpleCommand(command) {
     /&&/,           // Logical AND
     /\|\|/,         // Logical OR
     /(?<!\\);/,     // Command separator (but not escaped \;)
+    /\n/,           // Newline command separator (multi-line commands)
+    /\r/,           // Carriage return (CRLF line endings)
     /&$/,           // Background execution
     /\$\(/,         // Command substitution $()
     /`/,            // Command substitution ``
@@ -260,6 +262,7 @@ export function isComplexPattern(pattern) {
     /&&/,           // Logical AND
     /\|\|/,         // Logical OR
     /;/,            // Command separator
+    /\n/,           // Newline command separator
     /&$/,           // Background execution
     /\$\(/,         // Command substitution $()
     /`/,            // Command substitution ``

package/src/agent/bashPermissions.js

@@ -402,6 +402,29 @@ export class BashPermissionChecker {
           i++;
           continue;
         }
+        // Check for newline (command separator in multi-line scripts)
+        // Also handle \r\n (CRLF) line endings
+        if (char === '\n' || (char === '\r' && nextChar === '\n')) {
+          if (current.trim()) {
+            components.push(current.trim());
+          }
+          current = '';
+          if (char === '\r') {
+            i += 2; // Skip \r\n
+          } else {
+            i++;
+          }
+          continue;
+        }
+        if (char === '\r') {
+          // Bare \r without \n
+          if (current.trim()) {
+            components.push(current.trim());
+          }
+          current = '';
+          i++;
+          continue;
+        }
       }
 
       current += char;

package/src/agent/schemaUtils.js

@@ -266,6 +266,36 @@ function normalizeJsonQuotes(str) {
   return result;
 }
 
+/**
+ * Check if a code block is embedded within a structured markdown document.
+ * Used to avoid extracting embedded JSON examples from markdown text.
+ * Issue #456: attempt_completion results containing markdown with JSON code block
+ * documentation examples were having the examples extracted as structured output.
+ *
+ * Normal AI behavior: AI wraps JSON answer in a code block with brief explanation text.
+ * Issue #456: AI returns a markdown document that contains JSON code blocks as examples.
+ *
+ * We distinguish these by checking if the surrounding text contains markdown structural
+ * elements (headings) which indicate a document rather than a brief explanation.
+ *
+ * @param {string} text - The full trimmed text
+ * @param {RegExpMatchArray} match - The regex match for the code block
+ * @returns {boolean} - true if the code block is embedded in a markdown document
+ */
+function isCodeBlockEmbeddedInDocument(text, match) {
+  const beforeBlock = text.substring(0, match.index).trim();
+  const afterBlock = text.substring(match.index + match[0].length).trim();
+
+  // Check if surrounding text contains markdown headings (lines starting with #)
+  // This is a strong signal that the content is a structured document, not just explanation text
+  const hasMarkdownHeadings = /^#{1,6}\s/m.test(beforeBlock) || /^#{1,6}\s/m.test(afterBlock);
+  if (hasMarkdownHeadings) {
+    return true;
+  }
+
+  return false;
+}
+
 /**
  * Clean AI response by extracting JSON content when response contains JSON
  * Only processes responses that contain JSON structures { or [
@@ -311,15 +341,20 @@ export function cleanSchemaResponse(response) {
   }
 
   // First, look for JSON after code block markers - similar to mermaid extraction
+  // Only extract from code blocks when they are the primary content (not embedded examples in markdown).
+  // Issue #456: When attempt_completion result contains markdown with embedded JSON code blocks
+  // as documentation examples, extracting those blocks produces wrong structured output.
+  // We check that there's no significant text content outside the code block.
+
   // Try with json language specifier
   const jsonBlockMatch = trimmed.match(/```json\s*\n([\s\S]*?)\n```/);
-  if (jsonBlockMatch) {
+  if (jsonBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, jsonBlockMatch)) {
     return normalizeJsonQuotes(jsonBlockMatch[1].trim());
   }
 
   // Try any code block with JSON content
   const anyBlockMatch = trimmed.match(/```\s*\n([{\[][\s\S]*?[}\]])\s*```/);
-  if (anyBlockMatch) {
+  if (anyBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, anyBlockMatch)) {
     return normalizeJsonQuotes(anyBlockMatch[1].trim());
   }
 
@@ -331,7 +366,7 @@ export function cleanSchemaResponse(response) {
 
   for (const pattern of codeBlockPatterns) {
     const match = trimmed.match(pattern);
-    if (match) {
+    if (match && !isCodeBlockEmbeddedInDocument(trimmed, match)) {
       return normalizeJsonQuotes(match[1].trim());
     }
   }
@@ -345,10 +380,11 @@ export function cleanSchemaResponse(response) {
   }
 
   // Look for code block start followed immediately by JSON
+  // Only extract if the code block is not embedded in a structured markdown document
   const codeBlockStartPattern = /```(?:json)?\s*\n?\s*([{\[])/;
   const codeBlockMatch = trimmed.match(codeBlockStartPattern);
 
-  if (codeBlockMatch) {
+  if (codeBlockMatch && !isCodeBlockEmbeddedInDocument(trimmed, codeBlockMatch)) {
     const startIndex = codeBlockMatch.index + codeBlockMatch[0].length - 1; // Position of the bracket
 
     // Find the matching closing bracket