@principal-ai/codebase-composition 0.1.0

package/README.md

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+# @principal-ai/codebase-composition
+
+Codebase decomposition into semantic layers for the Principal AI ecosystem.
+
+## Overview
+
+This package decomposes and composes codebases into structured semantic layers, enabling sophisticated analysis through layer-by-layer examination of project architecture.
+
+## Key Features
+
+- **Package Layer** - Discover and analyze package.json, requirements.txt, Cargo.toml, etc.
+- **Framework Layer** - Identify React, Vue, Angular, and other frameworks
+- **Type Layer** - Extract TypeScript types and interfaces
+- **Version Control Layer** - Git integration for ignore patterns and file filtering
+- **File Type Layer** - Categorize and analyze different file types
+- **Dependency Layer** - Track and analyze project dependencies
+
+## Installation
+
+```bash
+bun install @principal-ai/codebase-composition
+```
+
+## Usage
+
+```typescript
+import { PackageLayerModule, FrameworkLayerModule } from '@principal-ai/codebase-composition';
+import { FileTree } from '@principal-ai/repository-abstraction';
+
+// Use layer modules to analyze your codebase
+const packageLayer = new PackageLayerModule();
+const frameworkLayer = new FrameworkLayerModule();
+
+// Analyze a file tree
+const analysis = await packageLayer.analyze(fileTree);
+```
+
+## Dependencies
+
+- `@principal-ai/repository-abstraction` - For tree abstractions
+- `ignore` - Gitignore pattern matching
+- `js-toml` - TOML parsing
+- `pip-requirements-js` - Python requirements parsing
+- `typescript` - Type extraction
+
+## Development
+
+```bash
+# Install dependencies
+bun install
+
+# Build the package
+bun run build
+
+# Run tests
+bun test
+
+# Type checking
+bun run typecheck
+
+# Watch mode for development
+bun run dev
+```
+
+## License
+
+Private package - not for public distribution.

package/dist/index.d.ts

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+export type { FilePattern, FileSet, BaseLayer, PackageCommand, ConfigFile, PackageLayer, FileSystemFilterLayer, VersionControlLayer, VersionControlIgnorePattern, VersionControlProvider, FileInfo, DirectoryInfo, FileTree, FileSystemTree, // Alias for backward compatibility
+ExtractedType, PackageTypes, TypeDefinitionLayer, TypeExtractor, } from './types';
+export { FileTypeLayerModule, PackageLayerModule, VersionControlLayerFactory, DependencyLayerModule, FrameworkLayerModule, FileSystemModule, TypeExtractionModule, } from './modules';
+export type { FileTypeInfo, FileSystemModuleConfig, FileSystemLoadResult, TypeExtractionOptions, TypeScriptExtractionOptions, } from './modules';
+export { TypeScriptExtractor } from './modules';
+export { FilesystemService } from './services';
+export { GitVersionControlProvider, PackageManagerApiProvider } from './providers';
+export type { FileSystemAdapter, GitAdapter, ShellAdapter, PackageManager, PackageVersionInfo, VersionCheckResult, VulnerabilityInfo, VulnerabilityCheckResult, LicenseInfo, LicenseCheckResult, DependencyCheckProgress, BatchCheckOptions, } from './providers';
+//# sourceMappingURL=index.d.ts.map

package/dist/index.d.ts.map

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package/dist/index.js

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+"use strict";
+// Main export file for layers module
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.PackageManagerApiProvider = exports.GitVersionControlProvider = exports.FilesystemService = exports.TypeScriptExtractor = exports.TypeExtractionModule = exports.FileSystemModule = exports.FrameworkLayerModule = exports.DependencyLayerModule = exports.VersionControlLayerFactory = exports.PackageLayerModule = exports.FileTypeLayerModule = void 0;
+// Modules
+var modules_1 = require("./modules");
+Object.defineProperty(exports, "FileTypeLayerModule", { enumerable: true, get: function () { return modules_1.FileTypeLayerModule; } });
+Object.defineProperty(exports, "PackageLayerModule", { enumerable: true, get: function () { return modules_1.PackageLayerModule; } });
+Object.defineProperty(exports, "VersionControlLayerFactory", { enumerable: true, get: function () { return modules_1.VersionControlLayerFactory; } });
+Object.defineProperty(exports, "DependencyLayerModule", { enumerable: true, get: function () { return modules_1.DependencyLayerModule; } });
+Object.defineProperty(exports, "FrameworkLayerModule", { enumerable: true, get: function () { return modules_1.FrameworkLayerModule; } });
+Object.defineProperty(exports, "FileSystemModule", { enumerable: true, get: function () { return modules_1.FileSystemModule; } });
+Object.defineProperty(exports, "TypeExtractionModule", { enumerable: true, get: function () { return modules_1.TypeExtractionModule; } });
+var modules_2 = require("./modules");
+Object.defineProperty(exports, "TypeScriptExtractor", { enumerable: true, get: function () { return modules_2.TypeScriptExtractor; } });
+// Services
+var services_1 = require("./services");
+Object.defineProperty(exports, "FilesystemService", { enumerable: true, get: function () { return services_1.FilesystemService; } });
+// Providers
+var providers_1 = require("./providers");
+Object.defineProperty(exports, "GitVersionControlProvider", { enumerable: true, get: function () { return providers_1.GitVersionControlProvider; } });
+Object.defineProperty(exports, "PackageManagerApiProvider", { enumerable: true, get: function () { return providers_1.PackageManagerApiProvider; } });
+//# sourceMappingURL=index.js.map

package/dist/index.js.map

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package/dist/modules/DependencyLayerModule.d.ts

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+import { DependencyLayer, PackageLayer } from '../types/layer-types';
+export declare class DependencyLayerModule {
+    /**
+     * Create dependency layers from package layers
+     */
+    createDependencyLayers(packageLayers: PackageLayer[]): DependencyLayer[];
+    /**
+     * Add a dependency to the map
+     */
+    private addDependency;
+    /**
+     * Get JSON paths for content extraction
+     */
+    private getJsonPaths;
+    /**
+     * Get color for dependency based on type and name
+     */
+    private getDependencyColor;
+    /**
+     * Get icon for dependency based on its name/type
+     */
+    private getDependencyIcon;
+    /**
+     * Analyze dependency health and conflicts
+     */
+    analyzeDependencyHealth(dependencyLayers: DependencyLayer[]): {
+        duplicates: Array<{
+            name: string;
+            versions: string[];
+            packages: Record<string, string>;
+        }>;
+        outdated: Array<{
+            name: string;
+            version: string;
+            latest?: string;
+        }>;
+        security: Array<{
+            name: string;
+            severity: 'low' | 'medium' | 'high';
+            issue: string;
+        }>;
+    };
+}
+//# sourceMappingURL=DependencyLayerModule.d.ts.map

package/dist/modules/DependencyLayerModule.d.ts.map

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package/dist/modules/DependencyLayerModule.js

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+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.DependencyLayerModule = void 0;
+class DependencyLayerModule {
+    /**
+     * Create dependency layers from package layers
+     */
+    createDependencyLayers(packageLayers) {
+        const dependencyMap = new Map();
+        // Collect all dependencies from all packages
+        packageLayers.forEach(packageLayer => {
+            const { dependencies, devDependencies, peerDependencies } = packageLayer.packageData;
+            const packageName = packageLayer.packageData.name;
+            const packagePath = packageLayer.packageData.path;
+            // Process production dependencies
+            Object.entries(dependencies).forEach(([depName, version]) => {
+                this.addDependency(dependencyMap, depName, version, packageName, packagePath, 'prod');
+            });
+            // Process dev dependencies
+            Object.entries(devDependencies).forEach(([depName, version]) => {
+                this.addDependency(dependencyMap, depName, version, packageName, packagePath, 'dev');
+            });
+            // Process peer dependencies
+            Object.entries(peerDependencies).forEach(([depName, version]) => {
+                this.addDependency(dependencyMap, depName, version, packageName, packagePath, 'peer');
+            });
+        });
+        // Convert to DependencyLayer array
+        const dependencyLayers = [];
+        dependencyMap.forEach((depInfo, depName) => {
+            // For each unique version of this dependency
+            depInfo.versions.forEach((packageNames, version) => {
+                const declaredIn = Array.from(packageNames);
+                const isDev = declaredIn.every(pkg => depInfo.isDev.has(pkg));
+                const isPeer = declaredIn.some(pkg => depInfo.isPeer.has(pkg));
+                // Create file patterns for all package.json files that declare this dependency
+                const patterns = declaredIn.map(pkgName => {
+                    const path = depInfo.packagePaths.get(pkgName) || '.';
+                    return {
+                        type: 'exact',
+                        pattern: path === '.' ? 'package.json' : `${path}/package.json`,
+                        description: `${pkgName} package manifest`,
+                    };
+                });
+                // Create the source file set
+                const sourceFileSet = {
+                    id: `dep-source-${depName}-${version}`,
+                    name: 'Package manifests',
+                    patterns,
+                    matchedFiles: patterns.map(p => p.pattern),
+                    fileCount: patterns.length,
+                };
+                // Determine the dependency type for the ID
+                const depType = isPeer ? 'peer' : isDev ? 'dev' : 'prod';
+                const layer = {
+                    id: `dependency-${depType}-${depName}-${version.replace(/[^a-zA-Z0-9]/g, '-')}`,
+                    name: depName,
+                    type: 'dependency',
+                    enabled: false, // Dependencies are not enabled by default
+                    derivedFrom: {
+                        fileSets: [sourceFileSet],
+                        derivationType: 'content',
+                        description: `${depName}@${version} ${isPeer ? 'peer ' : ''}${isDev ? 'dev ' : ''}dependency`,
+                        contentExtraction: {
+                            method: 'parse',
+                            parser: {
+                                format: 'json',
+                                paths: this.getJsonPaths(depName, isDev, isPeer, declaredIn, depInfo),
+                            },
+                        },
+                    },
+                    dependencyData: {
+                        name: depName,
+                        version,
+                        isDev,
+                        isPeer,
+                        declaredIn: declaredIn.map(pkgName => {
+                            // Find the package layer ID
+                            const packageLayer = packageLayers.find(p => p.packageData.name === pkgName);
+                            return packageLayer?.id || `package-${pkgName}`;
+                        }),
+                        sourceFile: sourceFileSet,
+                    },
+                    color: this.getDependencyColor(depName, isDev, isPeer),
+                    icon: this.getDependencyIcon(depName),
+                    pillar: 'foundationHealth',
+                };
+                dependencyLayers.push(layer);
+            });
+        });
+        // Sort by dependency name and version
+        return dependencyLayers.sort((a, b) => {
+            const nameCompare = a.name.localeCompare(b.name);
+            if (nameCompare !== 0)
+                return nameCompare;
+            return a.dependencyData.version.localeCompare(b.dependencyData.version);
+        });
+    }
+    /**
+     * Add a dependency to the map
+     */
+    addDependency(dependencyMap, depName, version, packageName, packagePath, type) {
+        if (!dependencyMap.has(depName)) {
+            dependencyMap.set(depName, {
+                name: depName,
+                versions: new Map(),
+                isDev: new Set(),
+                isPeer: new Set(),
+                isProd: new Set(),
+                packagePaths: new Map(),
+            });
+        }
+        const depInfo = dependencyMap.get(depName);
+        // Add version
+        if (!depInfo.versions.has(version)) {
+            depInfo.versions.set(version, new Set());
+        }
+        depInfo.versions.get(version).add(packageName);
+        // Track package path
+        depInfo.packagePaths.set(packageName, packagePath);
+        // Track dependency type
+        if (type === 'dev') {
+            depInfo.isDev.add(packageName);
+        }
+        else if (type === 'peer') {
+            depInfo.isPeer.add(packageName);
+        }
+        else {
+            depInfo.isProd.add(packageName);
+        }
+    }
+    /**
+     * Get JSON paths for content extraction
+     */
+    getJsonPaths(depName, isDev, isPeer, declaredIn, depInfo) {
+        const paths = [];
+        declaredIn.forEach(pkgName => {
+            if (depInfo.isProd.has(pkgName)) {
+                paths.push(`dependencies.${depName}`);
+            }
+            if (depInfo.isDev.has(pkgName)) {
+                paths.push(`devDependencies.${depName}`);
+            }
+            if (depInfo.isPeer.has(pkgName)) {
+                paths.push(`peerDependencies.${depName}`);
+            }
+        });
+        return paths;
+    }
+    /**
+     * Get color for dependency based on type and name
+     */
+    getDependencyColor(name, isDev, isPeer) {
+        // Special colors for common dependencies
+        const specialColors = {
+            react: '#61DAFB',
+            'react-dom': '#61DAFB',
+            vue: '#4FC08D',
+            angular: '#DD0031',
+            typescript: '#3178C6',
+            webpack: '#8DD6F9',
+            vite: '#646CFF',
+            jest: '#C21325',
+            eslint: '#4B32C3',
+            prettier: '#F7B93E',
+            lodash: '#3492FF',
+            axios: '#5A29E4',
+            express: '#000000',
+            next: '#000000',
+            tailwindcss: '#06B6D4',
+        };
+        if (specialColors[name]) {
+            return specialColors[name];
+        }
+        // Default colors by type
+        if (isPeer)
+            return '#FF6B6B'; // Red for peer deps
+        if (isDev)
+            return '#FFA94D'; // Orange for dev deps
+        return '#40C057'; // Green for production deps
+    }
+    /**
+     * Get icon for dependency based on its name/type
+     */
+    getDependencyIcon(name) {
+        // Special icons for common dependency types
+        if (name.includes('react'))
+            return 'atom';
+        if (name.includes('vue'))
+            return 'triangle';
+        if (name.includes('angular'))
+            return 'hexagon';
+        if (name.includes('test') || name.includes('jest') || name.includes('mocha'))
+            return 'test-tube';
+        if (name.includes('lint') || name.includes('eslint'))
+            return 'check-circle';
+        if (name.includes('prettier'))
+            return 'palette';
+        if (name.includes('webpack') || name.includes('rollup') || name.includes('parcel'))
+            return 'package';
+        if (name.includes('vite') || name.includes('esbuild'))
+            return 'zap';
+        if (name.includes('typescript') || name.includes('ts-'))
+            return 'file-code';
+        if (name.includes('css') || name.includes('style'))
+            return 'palette';
+        if (name.includes('axios') || name.includes('fetch'))
+            return 'download';
+        if (name.includes('express') || name.includes('koa') || name.includes('fastify'))
+            return 'server';
+        if (name.includes('database') || name.includes('mongo') || name.includes('postgres'))
+            return 'database';
+        if (name.includes('auth') || name.includes('jwt'))
+            return 'lock';
+        if (name.includes('log') || name.includes('winston') || name.includes('pino'))
+            return 'file-text';
+        if (name.includes('cli') || name.includes('commander'))
+            return 'terminal';
+        if (name.includes('crypto') || name.includes('bcrypt'))
+            return 'shield';
+        // Default icon
+        return 'package-2';
+    }
+    /**
+     * Analyze dependency health and conflicts
+     */
+    analyzeDependencyHealth(dependencyLayers) {
+        const health = {
+            duplicates: [],
+            outdated: [],
+            security: [],
+        };
+        // Group by dependency name
+        const depGroups = new Map();
+        dependencyLayers.forEach(layer => {
+            const name = layer.dependencyData.name;
+            if (!depGroups.has(name)) {
+                depGroups.set(name, []);
+            }
+            depGroups.get(name).push(layer);
+        });
+        // Check for duplicates (multiple versions)
+        depGroups.forEach((layers, name) => {
+            if (layers.length > 1) {
+                const versions = new Set();
+                const packages = {};
+                layers.forEach(layer => {
+                    versions.add(layer.dependencyData.version);
+                    // Get package names from declaredIn
+                    layer.dependencyData.declaredIn.forEach((layerId) => {
+                        // Extract package name from layer ID (e.g., "package-node-root" -> "root")
+                        const pkgName = layerId.replace(/^package-[^-]+-/, '');
+                        packages[pkgName] = layer.dependencyData.version;
+                    });
+                });
+                if (versions.size > 1) {
+                    health.duplicates.push({
+                        name,
+                        versions: Array.from(versions),
+                        packages,
+                    });
+                }
+            }
+        });
+        // Check for known security issues (simplified)
+        const knownIssues = {
+            minimist: {
+                severity: 'high',
+                issue: 'Prototype pollution vulnerability in versions < 1.2.6',
+            },
+            lodash: { severity: 'medium', issue: 'Multiple vulnerabilities in versions < 4.17.21' },
+            'node-fetch': { severity: 'high', issue: 'Denial of service in versions < 2.6.7' },
+        };
+        depGroups.forEach((layers, name) => {
+            if (knownIssues[name]) {
+                health.security.push({
+                    name,
+                    ...knownIssues[name],
+                });
+            }
+        });
+        return health;
+    }
+}
+exports.DependencyLayerModule = DependencyLayerModule;
+//# sourceMappingURL=DependencyLayerModule.js.map

package/dist/modules/DependencyLayerModule.js.map

@@ -0,0 +1 @@
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package/dist/modules/FileSystemModule.d.ts

@@ -0,0 +1,30 @@
+import { FileTree } from '@principal-ai/repository-abstraction';
+import { FileSystemFilterLayer, BaseLayer } from '../types';
+export interface FileSystemModuleConfig {
+    directoryPath: string;
+    buildFileSystemTree: (path: string, filters?: FileSystemFilterLayer[]) => Promise<FileTree>;
+}
+export interface FileSystemLoadResult {
+    fileSystemTree: FileTree;
+    filterLayers: FileSystemFilterLayer[];
+    warningLayers: BaseLayer[];
+}
+/**
+ * Module responsible for loading and filtering the filesystem tree
+ * Now simplified to use globby-based filtering
+ */
+export declare class FileSystemModule {
+    private config;
+    constructor(config: FileSystemModuleConfig);
+    /**
+     * Load the filesystem tree using globby-based filtering
+     */
+    loadFileSystemTree(): Promise<FileSystemLoadResult>;
+    /**
+     * Get all package.json files from the filesystem tree
+     */
+    getPackageJsonFiles(fileSystemTree: FileTree): Array<{
+        path: string;
+    }>;
+}
+//# sourceMappingURL=FileSystemModule.d.ts.map

package/dist/modules/FileSystemModule.d.ts.map

@@ -0,0 +1 @@
+{"version":3,"file":"FileSystemModule.d.ts","sourceRoot":"","sources":["../../src/modules/FileSystemModule.ts"],"names":[],"mappings":"AAAA,OAAO,EAAE,QAAQ,EAAE,MAAM,sCAAsC,CAAC;AAChE,OAAO,EAAE,qBAAqB,EAAE,SAAS,EAAE,MAAM,UAAU,CAAC;AAE5D,MAAM,WAAW,sBAAsB;IACrC,aAAa,EAAE,MAAM,CAAC;IACtB,mBAAmB,EAAE,CAAC,IAAI,EAAE,MAAM,EAAE,OAAO,CAAC,EAAE,qBAAqB,EAAE,KAAK,OAAO,CAAC,QAAQ,CAAC,CAAC;CAC7F;AAED,MAAM,WAAW,oBAAoB;IACnC,cAAc,EAAE,QAAQ,CAAC;IACzB,YAAY,EAAE,qBAAqB,EAAE,CAAC;IACtC,aAAa,EAAE,SAAS,EAAE,CAAC;CAC5B;AAED;;;GAGG;AACH,qBAAa,gBAAgB;IAC3B,OAAO,CAAC,MAAM,CAAyB;gBAE3B,MAAM,EAAE,sBAAsB;IAI1C;;OAEG;IACG,kBAAkB,IAAI,OAAO,CAAC,oBAAoB,CAAC;IAwBzD;;OAEG;IACH,mBAAmB,CAAC,cAAc,EAAE,QAAQ,GAAG,KAAK,CAAC;QAAE,IAAI,EAAE,MAAM,CAAA;KAAE,CAAC;CASvE"}

package/dist/modules/FileSystemModule.js

@@ -0,0 +1,46 @@
+"use strict";
+Object.defineProperty(exports, "__esModule", { value: true });
+exports.FileSystemModule = void 0;
+/**
+ * Module responsible for loading and filtering the filesystem tree
+ * Now simplified to use globby-based filtering
+ */
+class FileSystemModule {
+    constructor(config) {
+        this.config = config;
+    }
+    /**
+     * Load the filesystem tree using globby-based filtering
+     */
+    async loadFileSystemTree() {
+        const { directoryPath, buildFileSystemTree } = this.config;
+        if (!directoryPath || !buildFileSystemTree) {
+            throw new Error('Directory path and buildFileSystemTree function are required');
+        }
+        console.log('[FileSystemModule] Loading filesystem tree with globby...');
+        // Build filesystem tree (adapters handle .gitignore filtering via globby)
+        const fileSystemTree = await buildFileSystemTree(directoryPath, []);
+        console.log('[FileSystemModule] Tree loaded:', {
+            totalFiles: fileSystemTree?.allFiles?.length || 0,
+            totalDirectories: fileSystemTree?.allDirectories?.length || 0,
+        });
+        return {
+            fileSystemTree,
+            filterLayers: [], // No filter layers - globby handles everything
+            warningLayers: [],
+        };
+    }
+    /**
+     * Get all package.json files from the filesystem tree
+     */
+    getPackageJsonFiles(fileSystemTree) {
+        if (!fileSystemTree?.allFiles) {
+            return [];
+        }
+        return fileSystemTree.allFiles
+            .filter(file => file.path?.endsWith('package.json'))
+            .map(file => ({ path: file.path }));
+    }
+}
+exports.FileSystemModule = FileSystemModule;
+//# sourceMappingURL=FileSystemModule.js.map

package/dist/modules/FileSystemModule.js.map

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package/dist/modules/FileTypeLayerModule.d.ts

@@ -0,0 +1,34 @@
+import { FileTree } from '@principal-ai/repository-abstraction';
+import { BaseLayer } from '../types/layer-types';
+export interface FileTypeInfo {
+    extension: string;
+    name: string;
+    count: number;
+    files: string[];
+    color: string;
+    icon: string;
+    category?: string;
+}
+export declare class FileTypeLayerModule {
+    /**
+     * Extract file type information from the file tree
+     */
+    extractFileTypes(fileTree: FileTree): FileTypeInfo[];
+    /**
+     * Create BaseLayer objects from file type information
+     */
+    createFileTypeLayers(fileTypes: FileTypeInfo[]): BaseLayer[];
+    /**
+     * Get file extension from filename
+     */
+    private getFileExtension;
+    /**
+     * Check if a path should be ignored
+     */
+    private shouldIgnorePath;
+    /**
+     * Create file type layers from a file tree
+     */
+    processFileTree(fileTree: FileTree): Promise<BaseLayer[]>;
+}
+//# sourceMappingURL=FileTypeLayerModule.d.ts.map

package/dist/modules/FileTypeLayerModule.d.ts.map

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