@precisionutilityguild/liquid-shadow 1.0.1 → 1.0.2

package/dist/entry/cli/index.js

@@ -1,14 +1,14 @@
 #!/usr/bin/env node
-var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDescriptor;var Oo=Object.getOwnPropertyNames;var Fo=Object.getPrototypeOf,Ho=Object.prototype.hasOwnProperty;var Wo=(s=>typeof require<"u"?require:typeof Proxy<"u"?new Proxy(s,{get:(e,t)=>(typeof require<"u"?require:e)[t]}):s)(function(s){if(typeof require<"u")return require.apply(this,arguments);throw Error('Dynamic require of "'+s+'" is not supported')});var V=(s,e)=>()=>(s&&(e=s(s=0)),e);var Uo=(s,e)=>()=>(e||s((e={exports:{}}).exports,e),e.exports),Ai=(s,e)=>{for(var t in e)Jn(s,t,{get:e[t],enumerable:!0})},jo=(s,e,t,n)=>{if(e&&typeof e=="object"||typeof e=="function")for(let i of Oo(e))!Ho.call(s,i)&&i!==t&&Jn(s,i,{get:()=>e[i],enumerable:!(n=Do(e,i))||n.enumerable});return s};var Bo=(s,e,t)=>(t=s!=null?Po(Fo(s)):{},jo(e||!s||!s.__esModule?Jn(t,"default",{value:s,enumerable:!0}):t,s));import zo from"pino";var Go,qo,_,N=V(()=>{"use strict";Go={10:"TRACE",20:"DEBUG",30:"INFO",40:"WARN",50:"ERROR",60:"FATAL"},qo=zo({level:process.env.LOG_LEVEL||"info",base:{service:"liquid-shadow"},formatters:{level(s,e){return{level:s,severity:Go[e]??"INFO"}}},transport:{target:"pino-pretty",options:{colorize:!0,translateTime:"HH:MM:ss",destination:2,levelKey:"severity",messageKey:"message"}}}),_=qo});import St from"fs";import Yn from"path";import{fileURLToPath as Vo}from"url";function Xo(s){s.exec(`
+var Wo=Object.create;var Vn=Object.defineProperty;var jo=Object.getOwnPropertyDescriptor;var Uo=Object.getOwnPropertyNames;var Bo=Object.getPrototypeOf,zo=Object.prototype.hasOwnProperty;var Go=(i=>typeof require<"u"?require:typeof Proxy<"u"?new Proxy(i,{get:(e,t)=>(typeof require<"u"?require:e)[t]}):i)(function(i){if(typeof require<"u")return require.apply(this,arguments);throw Error('Dynamic require of "'+i+'" is not supported')});var Q=(i,e)=>()=>(i&&(e=i(i=0)),e);var qo=(i,e)=>()=>(e||i((e={exports:{}}).exports,e),e.exports),Os=(i,e)=>{for(var t in e)Vn(i,t,{get:e[t],enumerable:!0})},Jo=(i,e,t,n)=>{if(e&&typeof e=="object"||typeof e=="function")for(let s of Uo(e))!zo.call(i,s)&&s!==t&&Vn(i,s,{get:()=>e[s],enumerable:!(n=jo(e,s))||n.enumerable});return i};var Yo=(i,e,t)=>(t=i!=null?Wo(Bo(i)):{},Jo(e||!i||!i.__esModule?Vn(t,"default",{value:i,enumerable:!0}):t,i));import Vo from"pino";var Qo,Ko,_,P=Q(()=>{"use strict";Qo={10:"TRACE",20:"DEBUG",30:"INFO",40:"WARN",50:"ERROR",60:"FATAL"},Ko=Vo({level:process.env.LOG_LEVEL||"info",base:{service:"liquid-shadow"},formatters:{level(i,e){return{level:i,severity:Qo[e]??"INFO"}}},transport:{target:"pino-pretty",options:{colorize:!0,translateTime:"HH:MM:ss",destination:2,levelKey:"severity",messageKey:"message"}}}),_=Ko});import St from"fs";import Qn from"path";import{fileURLToPath as ea}from"url";function sa(i){i.exec(`
     CREATE TABLE IF NOT EXISTS schema_migrations (
       version INTEGER PRIMARY KEY,
       name TEXT NOT NULL,
       applied_at REAL DEFAULT (unixepoch())
     );
-  `)}function Zo(s){Xo(s);let e=s.prepare("SELECT version FROM schema_migrations ORDER BY version").all();return new Set(e.map(t=>t.version))}function ea(){let s=Ko;if(!St.readdirSync(s).some(r=>r.match(/^\d{3}_.*\.sql$/))){let r=Yn.resolve(s,"../../data/migrations");St.existsSync(r)&&St.readdirSync(r).some(l=>l.match(/^\d{3}_.*\.sql$/))&&(s=r)}let n=St.readdirSync(s).filter(r=>r.match(/^\d{3}_.*\.sql$/)).sort(),i=[];for(let r of n){let o=r.match(/^(\d{3})_(.+)\.sql$/);if(!o)continue;let l=parseInt(o[1],10),c=o[2],p=St.readFileSync(Yn.join(s,r),"utf-8").split(/^-- DOWN$/m),d=p[0].trim(),u=p[1]?.trim();i.push({version:l,name:c,up:d,down:u})}return i}function ta(s,e){_t.info({version:e.version,name:e.name},"Applying migration"),s.transaction(()=>{s.exec(e.up),s.prepare("INSERT INTO schema_migrations (version, name) VALUES (?, ?)").run(e.version,e.name)})(),_t.info({version:e.version},"Migration applied successfully")}function Fi(s){let e=Zo(s),n=ea().filter(i=>!e.has(i.version));if(n.length===0){_t.debug("No pending migrations");return}_t.info({count:n.length},"Running pending migrations");for(let i of n)ta(s,i);_t.info("All migrations complete")}var _t,Qo,Ko,Hi=V(()=>{"use strict";N();_t=_.child({module:"migrations"}),Qo=Vo(import.meta.url),Ko=Yn.dirname(Qo)});import na from"better-sqlite3";import Bt from"path";import Vn from"fs";import Wi from"crypto";import ia from"os";function Gt(s){let e=ia.homedir(),t=Bt.join(e,".mcp-liquid-shadow"),n=Bt.join(t,"dbs");Vn.existsSync(n)||Vn.mkdirSync(n,{recursive:!0});let i=Wi.createHash("sha256").update(s).digest("hex").substring(0,12),o=`${Bt.basename(s).replace(/[^a-zA-Z0-9-_]/g,"_")}_${i}.db`;return Bt.join(n,o)}function sa(s,e){let t=e||Gt(s);Ie.info({repoPath:s,dbPath:t},"Initializing database");let n=new na(t);return n.pragma("journal_mode = WAL"),n.pragma("busy_timeout = 5000"),Fi(n),zt.set(s,t),Me.set(t,n),Ie.info({repoPath:s,dbPath:t},"Database initialized successfully"),n}function Qn(s){return Wi.createHash("sha256").update(s,"utf8").digest("hex")}function Ui(s,e){return e?Qn(s)!==e:!0}function ke(s){let e=zt.get(s)||Gt(s),t=Me.get(e);if(t){if(t.open)return t;Me.delete(e)}let n=sa(s);return Me.set(e,n),n}function Ye(s){let e=Gt(s);if(!Vn.existsSync(e))return!1;try{let t=ke(s);return t.prepare(`
+  `)}function ia(i){sa(i);let e=i.prepare("SELECT version FROM schema_migrations ORDER BY version").all();return new Set(e.map(t=>t.version))}function ra(){let i=na;if(!St.readdirSync(i).some(r=>r.match(/^\d{3}_.*\.sql$/))){let r=Qn.resolve(i,"../../data/migrations");St.existsSync(r)&&St.readdirSync(r).some(c=>c.match(/^\d{3}_.*\.sql$/))&&(i=r)}let n=St.readdirSync(i).filter(r=>r.match(/^\d{3}_.*\.sql$/)).sort(),s=[];for(let r of n){let o=r.match(/^(\d{3})_(.+)\.sql$/);if(!o)continue;let c=parseInt(o[1],10),a=o[2],p=St.readFileSync(Qn.join(i,r),"utf-8").split(/^-- DOWN$/m),d=p[0].trim(),u=p[1]?.trim();s.push({version:c,name:a,up:d,down:u})}return s}function oa(i,e){_t.info({version:e.version,name:e.name},"Applying migration"),i.transaction(()=>{i.exec(e.up),i.prepare("INSERT INTO schema_migrations (version, name) VALUES (?, ?)").run(e.version,e.name)})(),_t.info({version:e.version},"Migration applied successfully")}function Us(i){let e=ia(i),n=ra().filter(s=>!e.has(s.version));if(n.length===0){_t.debug("No pending migrations");return}_t.info({count:n.length},"Running pending migrations");for(let s of n)oa(i,s);_t.info("All migrations complete")}var _t,ta,na,Bs=Q(()=>{"use strict";P();_t=_.child({module:"migrations"}),ta=ea(import.meta.url),na=Qn.dirname(ta)});import aa from"better-sqlite3";import Gt from"path";import Kn from"fs";import zs from"crypto";import ca from"os";function Jt(i){let e=ca.homedir(),t=Gt.join(e,".mcp-liquid-shadow"),n=Gt.join(t,"dbs");Kn.existsSync(n)||Kn.mkdirSync(n,{recursive:!0});let s=zs.createHash("sha256").update(i).digest("hex").substring(0,12),o=`${Gt.basename(i).replace(/[^a-zA-Z0-9-_]/g,"_")}_${s}.db`;return Gt.join(n,o)}function la(i,e){let t=e||Jt(i);$e.info({repoPath:i,dbPath:t},"Initializing database");let n=new aa(t);return n.pragma("journal_mode = WAL"),n.pragma("busy_timeout = 5000"),Us(n),qt.set(i,t),Me.set(t,n),$e.info({repoPath:i,dbPath:t},"Database initialized successfully"),n}function Xn(i){return zs.createHash("sha256").update(i,"utf8").digest("hex")}function Gs(i,e){return e?Xn(i)!==e:!0}function ke(i){let e=qt.get(i)||Jt(i),t=Me.get(e);if(t){if(t.open)return t;Me.delete(e)}let n=la(i);return Me.set(e,n),n}function Ve(i){let e=Jt(i);if(!Kn.existsSync(e))return!1;try{let t=ke(i);return t.prepare(`
       SELECT value FROM index_metadata
       WHERE key = 'index_completed'
-    `).get()?.value==="true"?!0:t.prepare("SELECT COUNT(*) as count FROM files").get().count>0}catch(t){return Ie.debug({repoPath:s,error:t},"Error checking index status"),!1}}function Kn(s,e){let t=ke(s);t.prepare(`
+    `).get()?.value==="true"?!0:t.prepare("SELECT COUNT(*) as count FROM files").get().count>0}catch(t){return $e.debug({repoPath:i,error:t},"Error checking index status"),!1}}function Zn(i,e){let t=ke(i);t.prepare(`
     INSERT OR REPLACE INTO index_metadata (key, value, updated_at)
     VALUES ('index_completed', 'true', unixepoch())
   `).run(),t.prepare(`
@@ -17,14 +17,14 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
   `).run(Date.now().toString()),e&&t.prepare(`
       INSERT OR REPLACE INTO index_metadata (key, value, updated_at)
       VALUES ('last_indexed_commit', ?, unixepoch())
-    `).run(e),Ie.info({repoPath:s,commitSha:e},"Repository marked as indexed")}function xt(s){try{return ke(s).prepare(`
+    `).run(e),$e.info({repoPath:i,commitSha:e},"Repository marked as indexed")}function xt(i){try{return ke(i).prepare(`
       SELECT value FROM index_metadata
       WHERE key = 'last_indexed_commit'
-    `).get()?.value||null}catch(e){return Ie.debug({repoPath:s,error:e},"Error getting last indexed commit"),null}}function qt(s){let e=zt.get(s)||Gt(s),t=Me.get(e);t&&(t.open&&(Ie.info({repoPath:s,dbPath:e},"Closing database connection"),t.close()),Me.delete(e)),zt.delete(s)}function ji(){for(let[s,e]of Me.entries())try{e.open&&(Ie.info({dbPath:s},"Closing database connection"),e.close())}catch(t){Ie.error({dbPath:s,err:t},"Error closing database execution")}Me.clear()}var Ie,Me,zt,Bi,Ve=V(()=>{"use strict";N();Hi();Ie=_.child({module:"db"});Me=new Map,zt=new Map;process.on("exit",()=>ji());Bi=s=>{Ie.info({signal:s},"Received termination signal, closing databases"),ji(),process.exit(0)};process.on("SIGINT",()=>Bi("SIGINT"));process.on("SIGTERM",()=>Bi("SIGTERM"))});var K,be=V(()=>{"use strict";K=class{db;constructor(e){this.db=e}get database(){return this.db}all(e,...t){return this.db.prepare(e).all(...t)}get(e,...t){return this.db.prepare(e).get(...t)}run(e,...t){return this.db.prepare(e).run(...t).changes}insert(e,...t){return this.db.prepare(e).run(...t).lastInsertRowid}transaction(e){return this.db.transaction(e)()}}});import ra from"path";var Jt,zi=V(()=>{"use strict";be();Jt=class extends K{findByPath(e){return this.get("SELECT * FROM files WHERE path = ?",e)}findAll(e){let t="SELECT * FROM files ORDER BY path ASC";return e&&(t+=` LIMIT ${e}`),this.all(t)}getAllPaths(){return this.all("SELECT path FROM files").map(t=>t.path)}findInSubPath(e,t){let n=ra.resolve(e,t),i=n.endsWith("/")?n:n+"/";return this.all(`
+    `).get()?.value||null}catch(e){return $e.debug({repoPath:i,error:e},"Error getting last indexed commit"),null}}function Yt(i){let e=qt.get(i)||Jt(i),t=Me.get(e);t&&(t.open&&($e.info({repoPath:i,dbPath:e},"Closing database connection"),t.close()),Me.delete(e)),qt.delete(i)}function qs(){for(let[i,e]of Me.entries())try{e.open&&($e.info({dbPath:i},"Closing database connection"),e.close())}catch(t){$e.error({dbPath:i,err:t},"Error closing database execution")}Me.clear()}var $e,Me,qt,Js,Qe=Q(()=>{"use strict";P();Bs();$e=_.child({module:"db"});Me=new Map,qt=new Map;process.on("exit",()=>qs());Js=i=>{$e.info({signal:i},"Received termination signal, closing databases"),qs(),process.exit(0)};process.on("SIGINT",()=>Js("SIGINT"));process.on("SIGTERM",()=>Js("SIGTERM"))});var X,Ee=Q(()=>{"use strict";X=class{db;constructor(e){this.db=e}get database(){return this.db}all(e,...t){return this.db.prepare(e).all(...t)}get(e,...t){return this.db.prepare(e).get(...t)}run(e,...t){return this.db.prepare(e).run(...t).changes}insert(e,...t){return this.db.prepare(e).run(...t).lastInsertRowid}transaction(e){return this.db.transaction(e)()}}});import pa from"path";var Vt,Ys=Q(()=>{"use strict";Ee();Vt=class extends X{findByPath(e){return this.get("SELECT * FROM files WHERE path = ?",e)}findAll(e){let t="SELECT * FROM files ORDER BY path ASC";return e&&(t+=` LIMIT ${e}`),this.all(t)}getAllPaths(){return this.all("SELECT path FROM files").map(t=>t.path)}findInSubPath(e,t){let n=pa.resolve(e,t),s=n.endsWith("/")?n:n+"/";return this.all(`
       SELECT * FROM files 
       WHERE (path LIKE ? OR path = ?)
       ORDER BY path ASC
-    `,`${i}%`,n)}findWithEmbeddings(){return this.all("SELECT * FROM files WHERE embedding IS NOT NULL")}findFts(e,t=10){return this.all(`
+    `,`${s}%`,n)}findWithEmbeddings(){return this.all("SELECT * FROM files WHERE embedding IS NOT NULL")}findFts(e,t=10){return this.all(`
       SELECT files.*, files_fts.rank
       FROM files_fts
       JOIN files ON files.rowid = files_fts.rowid
@@ -35,7 +35,7 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
       SELECT * FROM files 
       WHERE ${n}
       LIMIT ?
-    `,...e.map(i=>`%${i}%`),t)}getContent(e){return this.get("SELECT content FROM file_content WHERE file_path = ?",e)?.content}findContentByToken(e,t=10){return this.all(`
+    `,...e.map(s=>`%${s}%`),t)}getContent(e){return this.get("SELECT content FROM file_content WHERE file_path = ?",e)?.content}findContentByToken(e,t=10){return this.all(`
           SELECT file_path 
           FROM content_fts 
           WHERE content_fts MATCH ? 
@@ -43,12 +43,12 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
             AND file_path NOT LIKE '%/test/%'
             AND file_path NOT LIKE '%.spec.%'
           LIMIT ?
-        `,`"${e.replace(/[^a-zA-Z0-9_\/]/g," ")}"`,t).map(i=>i.file_path)}findSynapses(e){let t="SELECT * FROM event_synapses WHERE 1=1",n=[];if(e.type&&(t+=" AND type = ?",n.push(e.type)),e.name){let i=e.name;i.startsWith("/")&&(i=i.substring(1)),i.endsWith("/")&&(i=i.substring(0,i.length-1)),i.length>0&&(t+=" AND (name LIKE ? OR name LIKE ? OR name = ?)",n.push(`${i}%`),n.push(`%/${i}%`),n.push(e.name))}return e.direction&&(t+=" AND direction = ?",n.push(e.direction)),t+=` LIMIT ${e.limit||50}`,this.all(t,...n)}exists(e){return!!this.get("SELECT 1 FROM files WHERE path = ?",e)}update(e,t){let n=Object.keys(t);if(n.length===0)return;let i=n.map(o=>`${o} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE files SET ${i} WHERE path = ?`,...r)}getStats(){let e=this.get(`
-      SELECT 
+        `,`"${e.replace(/[^a-zA-Z0-9_\/]/g," ")}"`,t).map(s=>s.file_path)}findSynapses(e){let t="SELECT * FROM event_synapses WHERE 1=1",n=[];if(e.type&&(t+=" AND type = ?",n.push(e.type)),e.name){let s=e.name;s.startsWith("/")&&(s=s.substring(1)),s.endsWith("/")&&(s=s.substring(0,s.length-1)),s.length>0&&(t+=" AND (name LIKE ? OR name LIKE ? OR name = ?)",n.push(`${s}%`),n.push(`%/${s}%`),n.push(e.name))}return e.direction&&(t+=" AND direction = ?",n.push(e.direction)),t+=` LIMIT ${e.limit||50}`,this.all(t,...n)}exists(e){return!!this.get("SELECT 1 FROM files WHERE path = ?",e)}update(e,t){let n=Object.keys(t);if(n.length===0)return;let s=n.map(o=>`${o} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE files SET ${s} WHERE path = ?`,...r)}getStats(){let e=this.get(`
+      SELECT
         COUNT(*) as total,
         SUM(CASE WHEN summary IS NOT NULL AND summary != '' THEN 1 ELSE 0 END) as withSummary
       FROM files
-    `);return{total:e?.total||0,withSummary:e?.withSummary||0}}getGravityMap(e=[],t){let n={},i=`
+    `);return{total:e?.total||0,withSummary:e?.withSummary||0}}getGravityMap(e=[],t){let n={},s=`
       SELECT ws.file_path, m.name as mission_name, m.status
       FROM working_set ws
       JOIN missions m ON ws.mission_id = m.id
@@ -57,14 +57,14 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
         OR m.id IN (${e.length>0?e.join(","):"-1"})
       )
       AND ws.file_path IS NOT NULL
-    `,r=[];t&&r.push(t);let o=this.all(i,...r);for(let a of o){n[a.file_path]||(n[a.file_path]={score:1,reasons:[]});let p=a.status==="in-progress"||a.status==="verifying"?1:.5;n[a.file_path].score+=p;let d=a.status==="in-progress"||a.status==="verifying"?"Working Set":"Lineage Bleed";n[a.file_path].reasons.push(`${d}: ${a.mission_name}`)}let l=Math.floor(Date.now()/1e3)-86400,c=this.all(`
+    `,r=[];t&&r.push(t);let o=this.all(s,...r);for(let l of o){n[l.file_path]||(n[l.file_path]={score:1,reasons:[]});let p=l.status==="in-progress"||l.status==="verifying"?1:.5;n[l.file_path].score+=p;let d=l.status==="in-progress"||l.status==="verifying"?"Working Set":"Lineage Bleed";n[l.file_path].reasons.push(`${d}: ${l.mission_name}`)}let c=Math.floor(Date.now()/1e3)-86400,a=this.all(`
       SELECT file_path, type, mission_id
       FROM intent_logs
       WHERE (created_at > ? OR mission_id IN (${e.length>0?e.join(","):"-1"}))
       AND file_path IS NOT NULL
       ORDER BY created_at DESC
       LIMIT 100
-    `,l);for(let a of c){n[a.file_path]||(n[a.file_path]={score:1,reasons:[]});let p=a.mission_id?e.includes(a.mission_id):!1,d=p?.1:.2;n[a.file_path].score<5&&(n[a.file_path].score+=d);let u=p?`Lineage Intent: ${a.type}`:`Recent Intent: ${a.type}`;!n[a.file_path].reasons.includes(u)&&n[a.file_path].reasons.length<5&&n[a.file_path].reasons.push(u)}return n}getCount(){return this.get("SELECT COUNT(*) as count FROM files")?.count||0}getTopDirectories(e,t=8){return this.all(`
+    `,c);for(let l of a){n[l.file_path]||(n[l.file_path]={score:1,reasons:[]});let p=l.mission_id?e.includes(l.mission_id):!1,d=p?.1:.2;n[l.file_path].score<5&&(n[l.file_path].score+=d);let u=p?`Lineage Intent: ${l.type}`:`Recent Intent: ${l.type}`;!n[l.file_path].reasons.includes(u)&&n[l.file_path].reasons.length<5&&n[l.file_path].reasons.push(u)}return n}getCount(){return this.get("SELECT COUNT(*) as count FROM files")?.count||0}getTopDirectories(e,t=8){return this.all(`
         SELECT 
             SUBSTR(path, LENGTH(?) + 2, 
                 INSTR(SUBSTR(path, LENGTH(?) + 2), '/') - 1
@@ -82,12 +82,12 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
         ORDER BY total_files DESC
         LIMIT ?
     `,e,e,e,t)}hasFilesPattern(e){return!!this.get("SELECT 1 FROM files WHERE path LIKE ? LIMIT 1",e)}findPackageJsonChildren(e){return this.all(`
-        SELECT 
+        SELECT
             path,
             SUBSTR(path, LENGTH(?) + 2) as relPath
-        FROM files 
+        FROM files
         WHERE path LIKE ? || '/%/package.json'
-    `,e,e)}deletePaths(e){if(e.length===0)return;let t=this.db.prepare("DELETE FROM files WHERE path = ?");this.db.transaction(i=>{for(let r of i)t.run(r)})(e)}updateMtime(e,t){this.run("UPDATE files SET mtime = ? WHERE path = ?",t,e)}batchSaveIndexResults(e,t,n,i){let r=this.db.prepare("DELETE FROM exports WHERE file_path = ?"),o=this.db.prepare("DELETE FROM imports WHERE file_path = ?"),l=this.db.prepare("DELETE FROM configs WHERE file_path = ?"),c=this.db.prepare("DELETE FROM file_content WHERE file_path = ?"),a=this.db.prepare("DELETE FROM event_synapses WHERE file_path = ?"),p=this.db.prepare("INSERT INTO exports (file_path, name, kind, signature, doc, start_line, end_line, classification, capabilities, parent_id, embedding) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)"),d=this.db.prepare("INSERT INTO imports (file_path, module_specifier, imported_symbols, resolved_path) VALUES (?, ?, ?, ?)"),u=this.db.prepare("INSERT INTO configs (file_path, key, value, kind) VALUES (?, ?, ?, ?)"),m=this.db.prepare("INSERT INTO file_content (file_path, content) VALUES (?, ?)"),h=this.db.prepare("INSERT INTO event_synapses (file_path, type, name, direction, line_number, code_snippet) VALUES (?, ?, ?, ?, ?, ?)"),b=this.db.prepare(`
+    `,e,e)}deletePaths(e){if(e.length===0)return;let t=this.db.prepare("DELETE FROM files WHERE path = ?");this.db.transaction(s=>{for(let r of s)t.run(r)})(e)}updateMtime(e,t){this.run("UPDATE files SET mtime = ? WHERE path = ?",t,e)}batchSaveIndexResults(e,t,n,s){let r=this.db.prepare("DELETE FROM exports WHERE file_path = ?"),o=this.db.prepare("DELETE FROM imports WHERE file_path = ?"),c=this.db.prepare("DELETE FROM configs WHERE file_path = ?"),a=this.db.prepare("DELETE FROM file_content WHERE file_path = ?"),l=this.db.prepare("DELETE FROM event_synapses WHERE file_path = ?"),p=this.db.prepare("INSERT INTO exports (file_path, name, kind, signature, doc, start_line, end_line, classification, capabilities, parent_id, embedding) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)"),d=this.db.prepare("INSERT INTO imports (file_path, module_specifier, imported_symbols, resolved_path) VALUES (?, ?, ?, ?)"),u=this.db.prepare("INSERT INTO configs (file_path, key, value, kind) VALUES (?, ?, ?, ?)"),m=this.db.prepare("INSERT INTO file_content (file_path, content) VALUES (?, ?)"),f=this.db.prepare("INSERT INTO event_synapses (file_path, type, name, direction, line_number, code_snippet) VALUES (?, ?, ?, ?, ?, ?)"),h=this.db.prepare(`
         INSERT INTO files (path, mtime, last_scanned_at, classification, summary, embedding, content_hash) 
         VALUES (?, ?, ?, ?, ?, ?, ?)
         ON CONFLICT(path) DO UPDATE SET
@@ -97,7 +97,7 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
             summary=excluded.summary,
             embedding=excluded.embedding,
             content_hash=excluded.content_hash
-    `);this.db.transaction(g=>{for(let y of g){let{meta:S,exports:w,imports:C,configs:T,events:I,content:x,classification:$,summary:R,embedding:v}=y;r.run(S.path),o.run(S.path),l.run(S.path),c.run(S.path),a.run(S.path);let P=x?n(x):null;if(b.run(S.path,S.mtime,Date.now(),$||"Unknown",R||"",v?JSON.stringify(v):null,P),w){let L=(H,B,ne)=>{for(let W of B){let D=W.embedding?JSON.stringify(W.embedding):null,M=p.run(H,W.name,W.kind,W.signature,W.doc||"",W.line,W.endLine||W.line,W.classification||"Other",W.capabilities||"[]",ne,D);W.members&&W.members.length>0&&L(H,W.members,M.lastInsertRowid)}};L(S.path,w,null)}if(C)for(let L of C){let H=i(L.module,S.path,t);d.run(S.path,L.module,L.name,H)}if(T)for(let L of T)u.run(S.path,L.key,L.value,L.kind);if(x!==void 0&&m.run(S.path,x),I)for(let L of I)h.run(S.path,L.type,L.name,L.direction,L.line,L.snippet)}})(e)}getLatestScanTime(){return this.get("SELECT MAX(last_scanned_at) as t FROM files")?.t||null}}});var Yt,Gi=V(()=>{"use strict";be();Yt=class extends K{findByNameAndFile(e,t){return this.all("SELECT * FROM exports WHERE file_path = ? AND name = ?",t,e)}findByNameGlobal(e){return this.all("SELECT * FROM exports WHERE name = ?",e)}findAtLine(e,t){return this.get(`
+    `);this.db.transaction(y=>{for(let g of y){let{meta:S,exports:R,imports:w,configs:T,events:v,content:k,classification:F,summary:x,embedding:I}=g;r.run(S.path),o.run(S.path),c.run(S.path),a.run(S.path),l.run(S.path);let M=k?n(k):null;if(h.run(S.path,S.mtime,Date.now(),F||"Unknown",x||"",I?JSON.stringify(I):null,M),R){let $=(j,H,N)=>{for(let L of H){let A=L.embedding?JSON.stringify(L.embedding):null,D=p.run(j,L.name,L.kind,L.signature,L.doc||"",L.line,L.endLine||L.line,L.classification||"Other",L.capabilities||"[]",N,A);L.members&&L.members.length>0&&$(j,L.members,D.lastInsertRowid)}};$(S.path,R,null)}if(w)for(let $ of w){let j=s($.module,S.path,t);d.run(S.path,$.module,$.name,j)}if(T)for(let $ of T)u.run(S.path,$.key,$.value,$.kind);if(k!==void 0&&m.run(S.path,k),v)for(let $ of v)f.run(S.path,$.type,$.name,$.direction,$.line,$.snippet)}})(e)}getLatestScanTime(){return this.get("SELECT MAX(last_scanned_at) as t FROM files")?.t||null}}});var Qt,Vs=Q(()=>{"use strict";Ee();Qt=class extends X{findByNameAndFile(e,t){return this.all("SELECT * FROM exports WHERE file_path = ? AND name = ?",t,e)}findByNameGlobal(e){return this.all("SELECT * FROM exports WHERE name = ?",e)}findAtLine(e,t){return this.get(`
       SELECT * FROM exports 
       WHERE file_path = ? AND start_line <= ? AND end_line >= ?
       ORDER BY (end_line - start_line) ASC -- Get innermost symbol
@@ -134,7 +134,7 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
         WHERE file_path = ?
         AND parent_id IS NULL
         ORDER BY start_line ASC
-    `,e)}findByName(e,t=20){return this.all("SELECT * FROM exports WHERE name = ? LIMIT ?",e,t)}findClassByName(e){return this.get("SELECT * FROM exports WHERE name = ? AND kind = 'ClassDeclaration' LIMIT 1",e)}findDefinitionCandidates(e,t){let n=[e],i=`
+    `,e)}findByName(e,t=20){return this.all("SELECT * FROM exports WHERE name = ? LIMIT ?",e,t)}findClassByName(e){return this.get("SELECT * FROM exports WHERE name = ? AND kind = 'ClassDeclaration' LIMIT 1",e)}findDefinitionCandidates(e,t){let n=[e],s=`
         SELECT e.id, e.name, e.kind, e.start_line, e.end_line, e.signature, e.doc, 
                f.path as file_path, e.classification, e.capabilities,
                p.name as parent_name, p.kind as parent_kind
@@ -142,12 +142,12 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
         JOIN files f ON e.file_path = f.path
         LEFT JOIN exports p ON e.parent_id = p.id
         WHERE e.name = ?
-    `;return t&&(i+=" AND f.path = ?",n.push(t)),i+=`
+    `;return t&&(s+=" AND f.path = ?",n.push(t)),s+=`
         ORDER BY 
         CASE WHEN e.parent_id IS NULL THEN 0 ELSE 1 END,
         CASE WHEN e.kind = 'ExportSpecifier' THEN 2 ELSE 0 END
         LIMIT 10
-    `,this.all(i,...n)}findMemberCandidates(e,t,n){let i=[e,t],r=`
+    `,this.all(s,...n)}findMemberCandidates(e,t,n){let s=[e,t],r=`
         SELECT e.id, e.name, e.kind, e.start_line, e.end_line, e.signature, e.doc, 
                f.path as file_path, e.classification, e.capabilities,
                p.name as parent_name, p.kind as parent_kind
@@ -155,12 +155,12 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
         JOIN files f ON e.file_path = f.path
         LEFT JOIN exports p ON e.parent_id = p.id
         WHERE p.name = ? AND e.name = ?
-    `;return n&&(r+=" AND f.path = ?",i.push(n)),r+=`
+    `;return n&&(r+=" AND f.path = ?",s.push(n)),r+=`
         ORDER BY 
         CASE WHEN e.parent_id IS NULL THEN 0 ELSE 1 END,
         CASE WHEN e.kind = 'ExportSpecifier' THEN 2 ELSE 0 END
         LIMIT 10
-    `,this.all(r,...i)}findPotentialParents(e){return this.all(`
+    `,this.all(r,...s)}findPotentialParents(e){return this.all(`
             SELECT name, kind, file_path 
             FROM exports 
             WHERE kind IN ('ClassDeclaration', 'ClassExpression', 'TsInterfaceDeclaration')
@@ -179,16 +179,16 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
       WHERE file_path = ? AND parent_id IS NULL 
       ORDER BY start_line ASC
     `,e)}findFts(e,t=20){return this.all(`
-      SELECT e.* 
+      SELECT e.*
       FROM exports e
-      JOIN exports_fts ef ON e.id = ef.rowid
-      WHERE ef MATCH ?
+      JOIN exports_fts ON e.id = exports_fts.rowid
+      WHERE exports_fts MATCH ?
       LIMIT ?
     `,e,t)}findByPartialName(e,t=20){return this.all(`
       SELECT * FROM exports 
       WHERE lower(name) LIKE ?
       LIMIT ?
-    `,`%${e.toLowerCase()}%`,t)}getAllNames(e=5e3){return this.all("SELECT DISTINCT name FROM exports WHERE parent_id IS NULL LIMIT ?",e).map(n=>n.name)}countByFile(e){return this.get("SELECT COUNT(*) as count FROM exports WHERE file_path = ?",e)?.count||0}findDeadExports(e=50,t=!1){let n=t?"":"AND e.file_path NOT LIKE '%/test/%' AND e.file_path NOT LIKE '%/__tests__/%' AND e.file_path NOT LIKE '%.spec.%' AND e.file_path NOT LIKE '%.test.%'";return this.all(`
+    `,`%${e.toLowerCase()}%`,t)}getAllNames(e=5e3){return this.all("SELECT DISTINCT name FROM exports WHERE parent_id IS NULL LIMIT ?",e).map(n=>n.name)}countByFile(e){return this.get("SELECT COUNT(*) as count FROM exports WHERE file_path = ?",e)?.count||0}findDeadExports(e={}){let{limit:t=50,includeTests:n=!1,includeMigrations:s=!1,includeFixtures:r=!1,excludePatterns:o=[],confidenceThreshold:c="all"}=e,a=[];n||(a.push("e.file_path NOT LIKE '%/test/%'"),a.push("e.file_path NOT LIKE '%/tests/%'"),a.push("e.file_path NOT LIKE '%/__tests__/%'"),a.push("e.file_path NOT LIKE '%.spec.%'"),a.push("e.file_path NOT LIKE '%.test.%'")),s||(a.push("e.file_path NOT LIKE '%/migrations/%'"),a.push("e.file_path NOT LIKE '%/migration/%'"),a.push("e.file_path NOT LIKE '%Migration.%'")),r||(a.push("e.file_path NOT LIKE '%/__fixtures__/%'"),a.push("e.file_path NOT LIKE '%/__mocks__/%'"),a.push("e.file_path NOT LIKE '%/fixtures/%'"),a.push("e.file_path NOT LIKE '%/mocks/%'"),a.push("e.file_path NOT LIKE '%.fixture.%'"),a.push("e.file_path NOT LIKE '%.mock.%'"));for(let m of o){let f=m.replace(/\*\*/g,"%").replace(/\*/g,"%").replace(/\?/g,"_");a.push(`e.file_path NOT LIKE '${f}'`)}let l=a.length>0?`AND ${a.join(" AND ")}`:"",d=this.all(`
         SELECT e.name, e.kind, e.file_path, e.start_line
         FROM exports e
         WHERE e.kind IN (
@@ -197,12 +197,12 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
           'ArrowFunctionExpression', 'FunctionExpression'
         )
         AND e.parent_id IS NULL
-        ${n}
+        ${l}
         AND NOT EXISTS (SELECT 1 FROM imports i WHERE i.imported_symbols LIKE '%' || e.name || '%')
         AND NOT EXISTS (SELECT 1 FROM imports i WHERE i.resolved_path = e.file_path AND i.imported_symbols LIKE '%*%')
         ORDER BY e.file_path, e.start_line
         LIMIT ?
-    `,e)}getGravityMap(e=[],t){let n={},i=`
+    `,t*2).map(m=>{let{confidence:f,reason:h}=this.scoreDeadExportConfidence(m);return{...m,confidence:f,reason:h}}),u=d;return c==="high"?u=d.filter(m=>m.confidence==="high"):c==="medium"&&(u=d.filter(m=>m.confidence==="high"||m.confidence==="medium")),u.slice(0,t)}scoreDeadExportConfidence(e){let t=e.file_path.toLowerCase(),n=e.name;return t.includes("/index.")||t.endsWith("index.ts")||t.endsWith("index.js")?{confidence:"low",reason:"Barrel/index file - likely re-export"}:e.kind==="TsInterfaceDeclaration"||e.kind==="TsTypeAliasDeclaration"?{confidence:"medium",reason:"Type definition - may be used externally"}:t.includes("/entry/")||t.includes("/bin/")||t.includes("main.")||t.includes("server.")||t.includes("cli.")?{confidence:"medium",reason:"Entry point - may be invoked externally"}:n.startsWith("create")||n.endsWith("Factory")||n.endsWith("Builder")?{confidence:"medium",reason:"Factory/builder pattern - may be used dynamically"}:n.startsWith("use")&&n.length>3?{confidence:"medium",reason:"Hook pattern - may be used in components"}:{confidence:"high",reason:"No detected usage"}}getGravityMap(e=[],t){let n={},s=`
       SELECT ws.symbol_id, m.name as mission_name, m.status
       FROM working_set ws
       JOIN missions m ON ws.mission_id = m.id
@@ -211,14 +211,14 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
         OR m.id IN (${e.length>0?e.join(","):"-1"})
       )
       AND ws.symbol_id IS NOT NULL
-    `,r=[];t&&r.push(t);let o=this.all(i,...r);for(let a of o){n[a.symbol_id]||(n[a.symbol_id]={score:1,reasons:[]});let p=a.status==="in-progress"||a.status==="verifying"?1:.5;n[a.symbol_id].score+=p;let d=a.status==="in-progress"||a.status==="verifying"?"Working Set":"Lineage Bleed";n[a.symbol_id].reasons.push(`${d}: ${a.mission_name}`)}let l=Math.floor(Date.now()/1e3)-86400,c=this.all(`
+    `,r=[];t&&r.push(t);let o=this.all(s,...r);for(let l of o){n[l.symbol_id]||(n[l.symbol_id]={score:1,reasons:[]});let p=l.status==="in-progress"||l.status==="verifying"?1:.5;n[l.symbol_id].score+=p;let d=l.status==="in-progress"||l.status==="verifying"?"Working Set":"Lineage Bleed";n[l.symbol_id].reasons.push(`${d}: ${l.mission_name}`)}let c=Math.floor(Date.now()/1e3)-86400,a=this.all(`
       SELECT symbol_id, type, mission_id
       FROM intent_logs
       WHERE (created_at > ? OR mission_id IN (${e.length>0?e.join(","):"-1"}))
       AND symbol_id IS NOT NULL
       ORDER BY created_at DESC
       LIMIT 200
-    `,l);for(let a of c){n[a.symbol_id]||(n[a.symbol_id]={score:1,reasons:[]});let p=a.mission_id?e.includes(a.mission_id):!1,d=p?.1:.2;n[a.symbol_id].score<5&&(n[a.symbol_id].score+=d);let u=p?`Lineage Intent: ${a.type}`:`Recent Intent: ${a.type}`;!n[a.symbol_id].reasons.includes(u)&&n[a.symbol_id].reasons.length<5&&n[a.symbol_id].reasons.push(u)}return n}getCount(){return this.get("SELECT COUNT(*) as count FROM exports")?.count||0}getKindDistribution(e=5){return this.all(`
+    `,c);for(let l of a){n[l.symbol_id]||(n[l.symbol_id]={score:1,reasons:[]});let p=l.mission_id?e.includes(l.mission_id):!1,d=p?.1:.2;n[l.symbol_id].score<5&&(n[l.symbol_id].score+=d);let u=p?`Lineage Intent: ${l.type}`:`Recent Intent: ${l.type}`;!n[l.symbol_id].reasons.includes(u)&&n[l.symbol_id].reasons.length<5&&n[l.symbol_id].reasons.push(u)}return n}getCount(){return this.get("SELECT COUNT(*) as count FROM exports")?.count||0}getKindDistribution(e=5){return this.all(`
             SELECT kind, COUNT(*) as c 
             FROM exports 
             WHERE kind IS NOT NULL AND kind != ''
@@ -231,7 +231,7 @@ var Po=Object.create;var Jn=Object.defineProperty;var Do=Object.getOwnPropertyDe
          OR name LIKE ? 
          OR name LIKE ?
       LIMIT 10
-      `,e,`%.${e}`,`%::${e}`)}}});var qi,Ji=V(()=>{"use strict";qi=`
+      `,e,`%.${e}`,`%::${e}`)}}});var Qs,Ks=Q(()=>{"use strict";Qs=`
 WITH RECURSIVE dependency_chain AS (
     -- Base case: Direct dependents of the target symbol
     -- Meaning: Files that import the file where the symbol is defined
@@ -266,7 +266,14 @@ WITH RECURSIVE dependency_chain AS (
     FROM imports i
     JOIN dependency_chain dc ON i.resolved_path = dc.consumer_path
     WHERE dc.depth < ? -- Max depth limit
-      AND instr(dc.path_chain, i.file_path) = 0 -- Cycle detection: ensure we haven't visited this file in this chain
+      AND instr(dc.path_chain, i.file_path) = 0 -- Cycle detection
+      AND (
+          -- If the intermediate file is a re-exporter (barrel), 
+          -- the next consumer must still be looking for the symbol
+          i.imported_symbols LIKE ? 
+          OR i.imported_symbols = '*' 
+          OR i.imported_symbols = ''
+      )
 )
 SELECT DISTINCT 
     dc.consumer_path,
@@ -275,7 +282,7 @@ SELECT DISTINCT
     dc.imported_symbols
 FROM dependency_chain dc
 ORDER BY dc.depth, dc.consumer_path;
-`});var Vt,Yi=V(()=>{"use strict";be();Ji();Vt=class extends K{findByFile(e){return this.all("SELECT * FROM imports WHERE file_path = ?",e)}findByFiles(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM imports WHERE file_path IN (${t}) ORDER BY file_path`,...e)}getAllResolved(){return this.all(`
+`});var Kt,Xs=Q(()=>{"use strict";Ee();Ks();Kt=class extends X{findByFile(e){return this.all("SELECT * FROM imports WHERE file_path = ?",e)}findByFiles(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM imports WHERE file_path IN (${t}) ORDER BY file_path`,...e)}getAllResolved(){return this.all(`
             SELECT * FROM imports 
             WHERE resolved_path IS NOT NULL AND resolved_path != ''
         `)}findDependents(e){return this.all("SELECT * FROM imports WHERE resolved_path = ?",e)}countByFile(e){return this.get("SELECT COUNT(*) as count FROM imports WHERE file_path = ?",e)?.count||0}countDependents(e){return this.get("SELECT COUNT(*) as count FROM imports WHERE resolved_path = ?",e)?.count||0}getImportsForFile(e){return this.all("SELECT module_specifier, imported_symbols, resolved_path FROM imports WHERE file_path = ?",e)}findImportSource(e,t){return this.get(`
@@ -301,7 +308,7 @@ ORDER BY dc.depth, dc.consumer_path;
             SELECT COUNT(*) as count FROM imports 
             WHERE resolved_path IN (${n})
             AND (imported_symbols LIKE ? OR imported_symbols = '' OR imported_symbols = '*')
-        `,...e,`%${t}%`)?.count||0}findImpactDependents(e,t,n){return this.all(qi,e,t,n)}getCount(){return this.get("SELECT COUNT(*) as count FROM imports")?.count||0}}});var Qt,Vi=V(()=>{"use strict";be();Qt=class extends K{findById(e){return this.get("SELECT * FROM missions WHERE id = ?",e)}findByIds(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM missions WHERE id IN (${t})`,...e)}findActive(e){let t="SELECT * FROM missions WHERE status IN ('in-progress', 'planned', 'verifying')",n=[];return e&&(t+=" AND git_branch = ?",n.push(e)),t+=` ORDER BY 
+        `,...e,`%${t}%`)?.count||0}findImpactDependents(e,t,n){return this.all(Qs,e,t,n,t)}getCount(){return this.get("SELECT COUNT(*) as count FROM imports")?.count||0}}});var Xt,Zs=Q(()=>{"use strict";Ee();Xt=class extends X{findById(e){return this.get("SELECT * FROM missions WHERE id = ?",e)}findByIds(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM missions WHERE id IN (${t})`,...e)}findActive(e){let t="SELECT * FROM missions WHERE status IN ('in-progress', 'planned', 'verifying')",n=[];return e&&(t+=" AND git_branch = ?",n.push(e)),t+=` ORDER BY 
         CASE WHEN status = 'in-progress' THEN 0 WHEN status = 'verifying' THEN 1 ELSE 2 END, 
         created_at ASC`,this.all(t,...n)}findAll(e){let t="SELECT * FROM missions",n=[];return e&&(t+=" WHERE status = ?",n.push(e)),t+=` ORDER BY 
         CASE WHEN status = 'in-progress' THEN 0 WHEN status = 'verifying' THEN 1 ELSE 2 END, 
@@ -313,7 +320,7 @@ ORDER BY dc.depth, dc.consumer_path;
     `,e)}create(e){return this.insert(`
       INSERT INTO missions (name, goal, strategy_graph, status, git_branch, commit_sha, parent_id, verification_context, outcome_contract)
       VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)
-    `,e.name,e.goal,e.strategy_graph,e.status,e.git_branch,e.commit_sha,e.parent_id,e.verification_context,e.outcome_contract)}addArtifact(e,t,n,i){this.run("INSERT INTO mission_artifacts (mission_id, type, identifier, metadata) VALUES (?, ?, ?, ?)",e,t,n,i?JSON.stringify(i):null)}getArtifacts(e){return this.all("SELECT * FROM mission_artifacts WHERE mission_id = ?",e)}update(e,t){let n=Object.keys(t);if(n.length===0)return;let i=n.map(o=>`${o} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE missions SET ${i}, updated_at = unixepoch() WHERE id = ?`,...r)}updateStatus(e,t,n){n?this.run("UPDATE missions SET status = ?, updated_at = unixepoch(), commit_sha = ? WHERE id = ?",t,n,e):this.run("UPDATE missions SET status = ?, updated_at = unixepoch() WHERE id = ?",t,e)}getWorkingSet(e){return this.all("SELECT file_path, type FROM working_set WHERE mission_id = ?",e)}clearWorkingSet(e){this.run("DELETE FROM working_set WHERE mission_id = ?",e)}addToWorkingSet(e,t,n="file"){this.run("INSERT OR IGNORE INTO files (path, mtime, last_scanned_at) VALUES (?, unixepoch(), unixepoch())",t),this.run("INSERT INTO working_set (mission_id, file_path, type) VALUES (?, ?, ?)",e,t,n)}findColdMissions(e,t=10){return this.all(`
+    `,e.name,e.goal,e.strategy_graph,e.status,e.git_branch,e.commit_sha,e.parent_id,e.verification_context,e.outcome_contract)}addArtifact(e,t,n,s){this.run("INSERT INTO mission_artifacts (mission_id, type, identifier, metadata) VALUES (?, ?, ?, ?)",e,t,n,s?JSON.stringify(s):null)}getArtifacts(e){return this.all("SELECT * FROM mission_artifacts WHERE mission_id = ?",e)}update(e,t){let n=Object.keys(t);if(n.length===0)return;let s=n.map(o=>`${o} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE missions SET ${s}, updated_at = unixepoch() WHERE id = ?`,...r)}updateStatus(e,t,n){n?this.run("UPDATE missions SET status = ?, updated_at = unixepoch(), commit_sha = ? WHERE id = ?",t,n,e):this.run("UPDATE missions SET status = ?, updated_at = unixepoch() WHERE id = ?",t,e)}getWorkingSet(e){return this.all("SELECT file_path, type FROM working_set WHERE mission_id = ?",e)}clearWorkingSet(e){this.run("DELETE FROM working_set WHERE mission_id = ?",e)}addToWorkingSet(e,t,n="file"){this.run("INSERT OR IGNORE INTO files (path, mtime, last_scanned_at) VALUES (?, unixepoch(), unixepoch())",t),this.run("INSERT INTO working_set (mission_id, file_path, type) VALUES (?, ?, ?)",e,t,n)}findColdMissions(e,t=10){return this.all(`
       SELECT m.id, COUNT(il.id) as log_count
       FROM missions m
       LEFT JOIN intent_logs il ON il.mission_id = m.id
@@ -321,8 +328,8 @@ ORDER BY dc.depth, dc.consumer_path;
       AND m.status != 'distilled'
       GROUP BY m.id
       HAVING log_count > ?
-    `,e,t).map(i=>i.id)}getStats(){let e=this.get(`
-      SELECT 
+    `,e,t).map(s=>s.id)}getStats(){let e=this.get(`
+      SELECT
         COUNT(*) as total,
         SUM(CASE WHEN status='completed' THEN 1 ELSE 0 END) as completed,
         SUM(CASE WHEN status IN ('in-progress', 'planned', 'verifying') THEN 1 ELSE 0 END) as active
@@ -331,13 +338,13 @@ ORDER BY dc.depth, dc.consumer_path;
       SELECT AVG(updated_at - created_at) AS avg_duration
       FROM missions
       WHERE status = 'completed' AND updated_at > created_at
-    `),i=n?.avg_duration!=null?Math.round(n.avg_duration):null,r=Math.floor(Date.now()/1e3)-168*3600,o=Math.floor(Date.now()/1e3)-720*3600,l=this.get("SELECT COUNT(*) AS n FROM missions WHERE status = 'completed' AND updated_at >= ?",r),c=this.get("SELECT COUNT(*) AS n FROM missions WHERE status = 'completed' AND updated_at >= ?",o),a=l?.n??0,p=c?.n??0,d=`${a} completed in last 7 days, ${p} in last 30 days.`;if(i!=null){let u=Math.round(i/60);d+=` Avg mission duration: ${u} min.`}return{completionRate:t,averageDurationSeconds:i,completedLast7Days:a,completedLast30Days:p,velocityNote:d}}suspendByBranch(e){this.run(`UPDATE missions 
+    `),s=n?.avg_duration!=null?Math.round(n.avg_duration):null,r=Math.floor(Date.now()/1e3)-168*3600,o=Math.floor(Date.now()/1e3)-720*3600,c=this.get("SELECT COUNT(*) AS n FROM missions WHERE status = 'completed' AND updated_at >= ?",r),a=this.get("SELECT COUNT(*) AS n FROM missions WHERE status = 'completed' AND updated_at >= ?",o),l=c?.n??0,p=a?.n??0,d=`${l} completed in last 7 days, ${p} in last 30 days.`;if(s!=null){let u=Math.round(s/60);d+=` Avg mission duration: ${u} min.`}return{completionRate:t,averageDurationSeconds:s,completedLast7Days:l,completedLast30Days:p,velocityNote:d}}suspendByBranch(e){this.run(`UPDATE missions 
        SET status = 'suspended', updated_at = unixepoch() 
        WHERE git_branch = ? AND status IN ('in-progress', 'planned', 'verifying')`,e)}resumeByBranch(e){this.run(`UPDATE missions 
        SET status = 'in-progress', updated_at = unixepoch() 
-       WHERE git_branch = ? AND status = 'suspended'`,e)}findMergedMissions(e,t){if(t.length===0)return[];let n=t.filter(r=>r!==e);if(n.length===0)return[];let i=n.map(()=>"?").join(",");return this.all(`SELECT * FROM missions 
+       WHERE git_branch = ? AND status = 'suspended'`,e)}findMergedMissions(e,t){if(t.length===0)return[];let n=t.filter(r=>r!==e);if(n.length===0)return[];let s=n.map(()=>"?").join(",");return this.all(`SELECT * FROM missions 
        WHERE status IN ('in-progress', 'planned', 'verifying', 'suspended')
-       AND git_branch IN (${i})`,...n)}findByCommitShas(e){if(e.length===0)return[];let t=e.map(()=>"?").join(",");return this.all(`SELECT * FROM missions WHERE commit_sha IN (${t})`,...e)}findByParentId(e){return this.all("SELECT * FROM missions WHERE parent_id = ?",e)}hasChildren(e){return!!this.get("SELECT 1 FROM missions WHERE parent_id = ? LIMIT 1",e)}hasNoSteps(e){if(!e.strategy_graph)return!0;try{let t=JSON.parse(e.strategy_graph),n=t?.steps??t;return!Array.isArray(n)||n.length===0}catch{return!0}}findParentOnlyIds(e){return e.filter(t=>t.parent_id!=null||!this.hasChildren(t.id)?!1:this.hasNoSteps(t)).map(t=>t.id)}createLink(e,t,n,i,r){this.db.exec(`
+       AND git_branch IN (${s})`,...n)}findByCommitShas(e){if(e.length===0)return[];let t=e.map(()=>"?").join(",");return this.all(`SELECT * FROM missions WHERE commit_sha IN (${t})`,...e)}findByParentId(e){return this.all("SELECT * FROM missions WHERE parent_id = ?",e)}hasChildren(e){return!!this.get("SELECT 1 FROM missions WHERE parent_id = ? LIMIT 1",e)}hasNoSteps(e){if(!e.strategy_graph)return!0;try{let t=JSON.parse(e.strategy_graph),n=t?.steps??t;return!Array.isArray(n)||n.length===0}catch{return!0}}findParentOnlyIds(e){return e.filter(t=>t.parent_id!=null||!this.hasChildren(t.id)?!1:this.hasNoSteps(t)).map(t=>t.id)}createLink(e,t,n,s,r){this.db.exec(`
             CREATE TABLE IF NOT EXISTS cross_repo_links (
                 id INTEGER PRIMARY KEY AUTOINCREMENT,
                 mission_id INTEGER NOT NULL,
@@ -352,11 +359,11 @@ ORDER BY dc.depth, dc.consumer_path;
     `),this.run(`
       INSERT INTO cross_repo_links (mission_id, linked_repo_path, linked_mission_id, relationship, direction)
       VALUES (?, ?, ?, ?, ?)
-    `,e,t,n,i,r)}getLinks(e){try{return this.all(`
+    `,e,t,n,s,r)}getLinks(e){try{return this.all(`
         SELECT linked_repo_path, linked_mission_id, relationship, direction
         FROM cross_repo_links
         WHERE mission_id = ?
-      `,e)}catch{return[]}}findLastMission(){return this.get("SELECT * FROM missions ORDER BY updated_at DESC, id DESC LIMIT 1")}findActiveByPriority(){return this.get("SELECT * FROM missions WHERE status IN ('in-progress', 'active', 'verifying') ORDER BY CASE WHEN status = 'in-progress' THEN 0 ELSE 1 END, created_at ASC LIMIT 1")}}});var Kt,Qi=V(()=>{"use strict";be();Kt=class extends K{findByMission(e,t=50){return this.all(`
+      `,e)}catch{return[]}}findLastMission(){return this.get("SELECT * FROM missions ORDER BY updated_at DESC, id DESC LIMIT 1")}findActiveByPriority(){return this.get("SELECT * FROM missions WHERE status IN ('in-progress', 'active', 'verifying') ORDER BY CASE WHEN status = 'in-progress' THEN 0 ELSE 1 END, created_at ASC LIMIT 1")}}});var Zt,ei=Q(()=>{"use strict";Ee();Zt=class extends X{findByMission(e,t=50){return this.all(`
       SELECT * FROM intent_logs 
       WHERE mission_id = ? 
       ORDER BY created_at DESC 
@@ -369,7 +376,7 @@ ORDER BY dc.depth, dc.consumer_path;
     `,e)}create(e){return this.insert(`
       INSERT INTO intent_logs (mission_id, symbol_id, file_path, type, content, confidence, symbol_name, signature, commit_sha)
       VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)
-    `,e.mission_id,e.symbol_id,e.file_path,e.type,e.content,e.confidence,e.symbol_name,e.signature,e.commit_sha)}delete(e){this.run("DELETE FROM intent_logs WHERE id = ?",e)}update(e,t){let n=Object.keys(t);if(n.length===0)return;let i=n.map(o=>`${o} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE intent_logs SET ${i} WHERE id = ?`,...r)}findRepairableOrphans(){return this.all(`
+    `,e.mission_id,e.symbol_id,e.file_path,e.type,e.content,e.confidence,e.symbol_name,e.signature,e.commit_sha)}delete(e){this.run("DELETE FROM intent_logs WHERE id = ?",e)}update(e,t){let n=Object.keys(t);if(n.length===0)return;let s=n.map(o=>`${o} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE intent_logs SET ${s} WHERE id = ?`,...r)}findRepairableOrphans(){return this.all(`
       SELECT id, file_path, symbol_name, signature 
       FROM intent_logs 
       WHERE symbol_id IS NULL AND symbol_name IS NOT NULL
@@ -391,34 +398,34 @@ ORDER BY dc.depth, dc.consumer_path;
           type = 'lapsed',
           content = 'Lapsed: ' || content
       WHERE id = ?
-    `,e)}importHeritage(e,t,n,i){this.run(`
+    `,e)}importHeritage(e,t,n,s){this.run(`
       INSERT INTO intent_logs (type, content, commit_sha, created_at, confidence, mission_id)
       VALUES ('heritage', ?, ?, ?, ?, 0)
-    `,e,t,n,i)}countByType(e){return this.get("SELECT COUNT(*) as count FROM intent_logs WHERE type = ?",e)?.count||0}}});var Xt,Ki=V(()=>{"use strict";be();Xt=class extends K{findByKey(e,t=20){return this.all(`
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exited unexpectedly")})})}handleTaskComplete(e,t,n){let s=this.pendingTasks.get(t);s&&(this.pendingTasks.delete(t),s.resolve(n)),e.busy=!1,e.currentTaskId=null,this.processQueue()}handleTaskError(e,t,n){let s=this.pendingTasks.get(t);s&&(this.pendingTasks.delete(t),s.reject(n)),e.busy=!1,e.currentTaskId=null,this.processQueue()}processQueue(){if(this.taskQueue.length===0)return;let e=this.workers.find(n=>!n.busy);if(!e)return;let t=this.taskQueue.shift();t&&(e.busy=!0,e.currentTaskId=t.id,this.pendingTasks.set(t.id,t),e.worker.postMessage({type:"embed",id:t.id,texts:t.texts}))}async generateEmbeddings(e,t=32,n){if(this.initialized||await this.initialize(),e.length===0)return[];let s=[];for(let l=0;l<e.length;l+=t)s.push(e.slice(l,l+t));let r=new Array(s.length),o=0,c=s.map((l,p)=>new Promise((d,u)=>{let f={id:`task_${++this.taskIdCounter}`,texts:l,resolve:h=>{if(r[p]=h,o++,n){let b=Math.min(o*t,e.length);n(b,e.length)}d()},reject:h=>{if(r[p]=new Array(l.length).fill(null),o++,_.warn({err:h,chunkIndex:p},"Chunk embedding failed"),n){let b=Math.min(o*t,e.length);n(b,e.length)}d()}};this.taskQueue.push(f),this.processQueue()}));await Promise.all(c);let a=[];for(let l of r)a.push(...l);return _.info({total:e.length,successful:a.filter(l=>l!==null).length,workers:this.workers.length},"Parallel embedding generation complete"),a}get workerCount(){return this.workers.length}get busyWorkers(){return this.workers.filter(e=>e.busy).length}get queueSize(){return this.taskQueue.length}get isInitialized(){return this.initialized}async shutdown(){if(this.shutdownRequested=!0,this.initPromise)try{await this.initPromise}catch{}if(!this.initialized&&this.workers.length===0){this.shutdownRequested=!1,this.initPromise=void 0;return}_.info({numWorkers:this.workers.length},"Shutting down embedding worker pool");let e=this.workers.map(t=>new 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ur(i){let{repoPath:e,filePath:t,symbolName:n}=Re(i);if(!t)return{isError:!0,content:[{type:"text",text:"Error: 'filePath' is required."}]};let s=t;await z(e);let r=C.getInstance(e);if(!Mt.existsSync(s))return{isError:!0,content:[{type:"text",text:`File not found: ${s}`}]};let o,c=ge.basename(s),a;if(n){let u=r.exports.findByNameAndFile(n,s);if(u.length>0){let m=u[0];o={start:m.start_line,end:m.end_line},c=m.name,a=m.start_line}}let l={type:o?"function":"file",name:c,path:ge.relative(e,s),line:a,children:[]},p=new Set;p.add(s+(n?`:${n}`:""));let d={count:0,truncated:!1};return await ut(s,l,e,r,p,1,d,o),d.truncated&&l.children.push({type:"function",name:"\u26A0\uFE0F Output Truncated",details:`Trace limited to ${Pt} nodes. 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+`);c&&(a=a.split(`
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+`));let u;if(l===".ts"||l===".tsx"||l===".js"||l===".jsx"){u=new Cn;let b={syntax:"typescript",tsx:i.endsWith(".tsx"),target:"es2020"};try{let y=c?`${d}
+${a}`:a,g=await pr.parse(y,b);u.visitModule(g)}catch{if(c)try{let g=`${d}
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-}`,S=await or.parse(y,E);u.visitModule(S)}catch{let S=new lt,w=a;S.visit(c,w),u.calls=S.calls,u.apiCalls=S.apiCalls,u.imports=S.imports}else{let y=new lt;y.visit(c,a),u.calls=y.calls,u.apiCalls=y.apiCalls,u.imports=y.imports}}}else u=new lt,u.visit(c,a);_.info({file:ge.basename(s),calls:u.calls.size,apiCalls:u.apiCalls.length,depth:r},"Analyzed file");let m=u.apiCalls.slice(0,10);for(let E of m){if(o.count>=Pt)break;if(o.count++,E.method==="PUBSUB"){let w={type:"event_trigger",name:`PubSub Event: ${E.url}`,details:"Detected via PubSub client usage",children:[]};e.children.push(w);let C=n.exports.findByNameGlobal(E.url).concat(n.exports.findByMethodName(E.url));if(E.url.length>10){let I=E.url.replace(/To[A-Z][a-zA-Z]+$/,"");if(I!==E.url){let x=n.exports.findByNameGlobal(I).concat(n.exports.findByMethodName(I));C.push(...x)}}let T=new Set;for(let I of C){if(T.has(I.file_path)||I.file_path===s)continue;if(T.add(I.file_path),o.count>=Pt)break;o.count++;let x={type:"subscriber",name:`${I.name} (${ge.basename(I.file_path)})`,path:ge.relative(t,I.file_path),line:I.start_line,details:"Potential Subscriber / Handler",children:[]};w.children.push(x),Mt.existsSync(I.file_path)&&!i.has(I.file_path)&&(i.add(I.file_path),await pt(I.file_path,x,t,n,i,r+1,o))}continue}let g={type:"api_call",name:`${E.method} ${E.url}`,details:"Detected via string literal analysis",children:[]};e.children.push(g);let S=rr(n,E.url).slice(0,rc);for(let w of S){if(o.count>=Pt)break;o.count++;let C={type:"route",name:w.signature||"Route Handler",path:w.file_path,line:w.start_line,children:[]};if(g.children.push(C),Mt.existsSync(w.file_path)&&!i.has(w.file_path)&&(i.add(w.file_path),await pt(w.file_path,C,t,n,i,r+1,o)),w.capabilities)try{let T=JSON.parse(w.capabilities);if(T.handler){let[I,x]=T.handler.split("@");if(I){let R=I.split("\\").pop();if(R){let v=n.exports.findClassByName(R);if(v){let P=n.exports.findByNameAndFile(x||"",v.file_path),L,H=v.start_line;P.length>0&&(L={start:P[0].start_line,end:P[0].end_line},H=P[0].start_line);let B={type:"component",name:`${R}${x?" :: "+x:""}`,path:ge.relative(t,v.file_path),line:H,details:"Controller Logic (Macro IR)",children:[]};C.children.push(B),i.has(v.file_path+(x?`:${x}`:""))||(i.add(v.file_path+(x?`:${x}`:"")),await pt(v.file_path,B,t,n,i,r+1,o,L))}}}}}catch{}}}let h=u.calls,b=Array.from(h).sort();for(let E of b)if(u.imports.has(E)){let g=u.imports.get(E);if(!g.startsWith(".")){if(["react","react-dom"].includes(g))continue;e.children.push({type:"function",name:E,details:`External: ${g}`,children:[]});continue}let y=$t(g,s,t);if(y&&Mt.existsSync(y))if(i.has(y))e.children.push({type:"function",name:E,details:"Circular / Already Visited",path:ge.relative(t,y),children:[]});else{i.add(y);let S={type:"file",name:E,details:`Imported from ${ge.basename(y)}`,path:ge.relative(t,y),children:[]};e.children.push(S),await pt(y,S,t,n,i,r+1,o)}}else if(!["log","info","error","warn","print"].includes(E)){let g=n.exports.findByNameGlobal(E);if(g.length===0){let y=E.split(/(?:\.|->|::)+/);if(y.length>1){let S=y[y.length-1];g=n.exports.findByMethodName(S)}}if(g.length>0){let y=g.find(w=>w.file_path===s),S=y||(g.length===1?g[0]:null);if(S){let w=`${S.file_path}:${S.name}`;if(!i.has(w)){i.add(w);let C={type:"component",name:E,details:`Resolved via global index${y?" (local)":""}`,path:ge.relative(t,S.file_path),line:S.start_line,children:[]};e.children.push(C),await pt(S.file_path,C,t,n,i,r+1,o,{start:S.start_line,end:S.end_line})}}}}}catch(c){_.error({filePath:s,error:c.message},"Trace analysis failed"),e.children.push({type:"function",name:"Error",details:c.message,children:[]})}}}async function cr(s,e){let t=In.resolve(e.dir),n=In.isAbsolute(s)?s:In.resolve(t,s);await U(async()=>{le("Execution Trace");let i=ue();i.start(`Tracing ${f.cyan(e.symbolName||In.basename(n))}...`);try{let r=await ar({repoPath:t,filePath:n,symbolName:e.symbolName});i.stop("Trace complete."),r.isError?console.error(f.red(r.content[0].text)):te("Flow Results",r.content[0].text,"magenta")}catch(r){throw i.stop(`Trace failed: ${r.message}`),r}finally{await G(t)}})}import fc from"path";F();dt();N();import{execSync as Hr}from"child_process";import hc from"path";var kn=_.child({module:"shadow-trace"}),mt=class{intentLogs;exports;repoPath;hologramService;constructor(e){let{intentLogs:t,exports:n}=k.getInstance(e);this.intentLogs=t,this.exports=n,this.repoPath=e,this.hologramService=new de(e)}analyzeGhostChanges(e){let t=e?`${e}..HEAD`:"HEAD~1..HEAD",n=[];try{let r=Hr(`git diff --name-only ${t}`,{cwd:this.repoPath,encoding:"utf-8"}).split(`
-`).filter(o=>o.trim()!=="");if(r.length===0)return;kn.info({files:r.length,range:t},"Initiating Shadow Trace analysis...");for(let o of r){let l=hc.join(this.repoPath,o),a=Hr(`git diff -U0 ${t} -- ${o}`,{cwd:this.repoPath,encoding:"utf-8"}).matchAll(/@@ -(\d+)(?:,\d+)? \+(\d+)(?:,\d+)? @@/g);for(let p of a){let d=parseInt(p[2],10),u=this.exports.findAtLine(l,d);u&&(this.intentLogs.create({mission_id:0,file_path:l,symbol_id:u.id,type:"discovery",content:`Shadow Trace: Modified externally in ${t}`,confidence:.8,symbol_name:u.name,signature:u.signature,commit_sha:null}),kn.debug({symbol:u.name},"Logged ghost change"),n.push({from:"external",to:`${o}:${u.name}`,pattern:"git-delta",confidence:.8}))}}n.length>0&&this.hologramService.updateGhostBridges(n),kn.info("Shadow Trace complete.")}catch(i){kn.warn({err:i.message},"Shadow Trace failed: git diff error.")}}};F();import{execSync as ht}from"child_process";var Cn=class{constructor(e,t="refs/notes/shadow"){this.repoPath=e;this.ref=t}addNote(e,t){try{ht(`git notes --ref ${this.ref} add -f -m '${t.replace(/'/g,"'\\''")}' ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch(n){throw new Error(`Failed to add git note to ${e}: ${n.message}`)}}getNote(e){try{return ht(`git notes --ref ${this.ref} show ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"}).trim()}catch{return null}}listNotes(){let e=new Map;try{let t=ht(`git notes --ref ${this.ref} list`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"}).trim();if(!t)return e;let n=t.split(`
-`);for(let i of n){let[r,o]=i.split(" ");if(o){let l=this.getNote(o);l&&e.set(o,l)}}}catch{}return e}removeNote(e){try{ht(`git notes --ref ${this.ref} remove ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch{}}push(e="origin"){try{ht(`git push ${e} ${this.ref}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch(t){throw new Error(`Failed to push git notes to ${e}: ${t.message}`)}}fetch(e="origin"){try{ht(`git fetch ${e} ${this.ref}:${this.ref}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch{}}};N();var ft=_.child({module:"persistence-service"}),Re=class{gitNotes;repoPath;constructor(e){this.repoPath=e,this.gitNotes=new Cn(e)}async syncMissionToGitNotes(e){let{missions:t,intentLogs:n}=k.getInstance(this.repoPath),i=t.findById(e);if(!i)throw new Error(`Mission ${e} not found`);if(!i.commit_sha){ft.warn({missionId:e},"Cannot sync mission without commit_sha");return}ft.info({missionId:e,commitSha:i.commit_sha},"Syncing mission to Git Notes");let r=t.getArtifacts(e),o=n.findByMission(e,1e3),l=o.find(p=>p.type==="adr"),c=o.filter(p=>p.type==="decision").map(p=>({content:p.content,symbol_name:p.symbol_name,created_at:p.created_at})),a={version:"1.0",mission:{name:i.name,goal:i.goal,status:i.status,strategy_graph:i.strategy_graph,git_branch:i.git_branch,commit_sha:i.commit_sha,parent_id:i.parent_id,verification_context:i.verification_context,outcome_contract:i.outcome_contract,created_at:i.created_at,updated_at:i.updated_at},artifacts:r,adr:l?l.content:null,decisions:c};this.gitNotes.addNote(i.commit_sha,JSON.stringify(a,null,2))}async syncAllToGitNotes(){let{missions:e}=k.getInstance(this.repoPath),t=e.findActive(),n=e.findRecentCompleted(10),i=[...t,...n];for(let r of i)try{await this.syncMissionToGitNotes(r.id)}catch(o){ft.error({missionId:r.id,error:o},"Failed to sync mission")}}async recoverFromGitNotes(){let e=this.gitNotes.listNotes(),{missions:t,intentLogs:n}=k.getInstance(this.repoPath),i=0,r=0;for(let[o,l]of e.entries())try{let c=JSON.parse(l);if(c.version!=="1.0")continue;if(t.findByCommitShas([o]).some(u=>u.name===c.mission.name)){ft.debug({commitSha:o,missionName:c.mission.name},"Mission already exists, skipping recovery");continue}let d=t.create({name:c.mission.name,goal:c.mission.goal,status:c.mission.status,strategy_graph:c.mission.strategy_graph,git_branch:c.mission.git_branch,commit_sha:o,parent_id:c.mission.parent_id,verification_context:c.mission.verification_context,outcome_contract:c.mission.outcome_contract});if(i++,c.adr&&(n.create({mission_id:Number(d),symbol_id:null,file_path:null,type:"adr",content:c.adr,confidence:1,symbol_name:null,signature:null,commit_sha:o}),r++),c.decisions&&c.decisions.length>0)for(let u of c.decisions)n.create({mission_id:Number(d),symbol_id:null,file_path:null,type:"decision",content:u.content,confidence:1,symbol_name:u.symbol_name,signature:null,commit_sha:o}),r++;ft.info({commitSha:o,missionName:c.mission.name,logsRecovered:r},"Re-hydrated mission from Git Notes")}catch(c){ft.error({commitSha:o,error:c},"Failed to parse Git Note for recovery")}return{missionsRecovered:i,logsRecovered:r}}};F();Ot();async function Wr(s){let{repoPath:e,sinceCommit:t}=s;try{await j(e),new mt(e).analyzeGhostChanges(t);let i=new _e(e),r=i.detectAndRepairShifts(),o=i.syncLifecycle(),c=await new Re(e).recoverFromGitNotes(),{HologramService:a}=await Promise.resolve().then(()=>(dt(),Fr)),p=new a(e),d=ut(k.getInstance(e),e);p.updateTopography(d);let u=p.computeGravityZones();p.updateGravityZones(u);let m="Shadow Sync complete. Code changes indexed and intent logs updated.";return m+=`
-\u269B\uFE0F Hologram: Refreshed architectural map (${u.length} hotspots).`,r.repaired>0&&(m+=`
-\u2728 Nano-Repair: Fixed ${r.repaired} links.`),c.missionsRecovered>0&&(m+=`
-\u{1F9EC} Re-hydration: Recovered ${c.missionsRecovered} missions.`),{content:[{type:"text",text:m}]}}catch(n){return{content:[{type:"text",text:`Error: ${n.message}`}],isError:!0}}}async function Ur(s,e){let t=fc.resolve(s);await U(async()=>{le("Shadow Sync");let n=ue();n.start("Synchronizing intelligence lifecycle...");try{let i=await Wr({repoPath:t,sinceCommit:e.sinceCommit});n.stop("Sync complete."),i.isError?console.error(f.red(i.content[0].text)):(console.log(""),console.log(i.content[0].text),console.log(""))}catch(i){throw n.stop(`Sync failed: ${i.message}`),i}finally{await G(t)}})}Ot();F();N();dt();import Br from"path";F();Ot();dt();import Le from"path";async function jr(s){let{repoPath:e}=s;await j(e);let t=k.getInstance(e),n=ut(t,e),r=new de(e).getSnapshot(),o=[],l=[],c=Object.values(n.layers.Entry.topFiles).map(u=>u.path),a=new Set(Object.values(n.layers.Data.topFiles).map(u=>u.path));for(let u of c){let m=Le.isAbsolute(u)?u:Le.join(e,u),h=t.imports.findByFile(m);for(let b of h)b.resolved_path&&a.has(Le.relative(e,b.resolved_path))&&o.push(`\u2694\uFE0F LAYER BYPASS: \`${Le.relative(e,u)}\` directly imports Data layer \`${Le.relative(e,b.resolved_path)}\`. Should go through Logic.`)}let p=r.gravity?.hotspots||[];for(let u of p){let m=Dt(u.filePath,t);(m.layer==="Utility"||m.layer==="Unknown")&&u.gravity>50&&l.push(`\u{1F6A8} GRAVITY ANOMALY: \`${Le.relative(e,u.filePath)}\` has high gravity (${u.gravity.toFixed(0)}) but is classified as ${m.layer}. Consider promoting to Core Logic.`)}for(let u of c){let m=Le.isAbsolute(u)?u:Le.join(e,u),h=t.exports.findByFile(m);h.length>10&&l.push(`\u{1F388} ENTRY BLOAT: \`${Le.relative(e,u)}\` exports ${h.length} symbols. Entry handlers should be thin interfaces.`)}let d=`# \u{1F575}\uFE0F Architectural Scout Report
-
-`;return o.length===0&&l.length===0?d+=`\u2705 No significant architectural drift detected. The structure remains "Legit".
+${a}
+}`,S=await pr.parse(g,b);u.visitModule(S)}catch{let S=new pt,R=l;S.visit(a,R),u.calls=S.calls,u.apiCalls=S.apiCalls,u.imports=S.imports}else{let g=new pt;g.visit(a,l),u.calls=g.calls,u.apiCalls=g.apiCalls,u.imports=g.imports}}}else u=new pt,u.visit(a,l);_.info({file:ge.basename(i),calls:u.calls.size,apiCalls:u.apiCalls.length,depth:r},"Analyzed file");let m=u.apiCalls.slice(0,10);for(let b of m){if(o.count>=Pt)break;if(o.count++,b.method==="PUBSUB"){let R={type:"event_trigger",name:`PubSub Event: ${b.url}`,details:"Detected via PubSub client usage",children:[]};e.children.push(R);let w=n.exports.findByNameGlobal(b.url).concat(n.exports.findByMethodName(b.url));if(b.url.length>10){let v=b.url.replace(/To[A-Z][a-zA-Z]+$/,"");if(v!==b.url){let k=n.exports.findByNameGlobal(v).concat(n.exports.findByMethodName(v));w.push(...k)}}let T=new Set;for(let v of w){if(T.has(v.file_path)||v.file_path===i)continue;if(T.add(v.file_path),o.count>=Pt)break;o.count++;let k={type:"subscriber",name:`${v.name} (${ge.basename(v.file_path)})`,path:ge.relative(t,v.file_path),line:v.start_line,details:"Potential Subscriber / Handler",children:[]};R.children.push(k),Mt.existsSync(v.file_path)&&!s.has(v.file_path)&&(s.add(v.file_path),await ut(v.file_path,k,t,n,s,r+1,o))}continue}let y={type:"api_call",name:`${b.method} ${b.url}`,details:"Detected via string literal analysis",children:[]};e.children.push(y);let S=lr(n,b.url).slice(0,pc);for(let R of S){if(o.count>=Pt)break;o.count++;let w={type:"route",name:R.signature||"Route Handler",path:R.file_path,line:R.start_line,children:[]};if(y.children.push(w),Mt.existsSync(R.file_path)&&!s.has(R.file_path)&&(s.add(R.file_path),await ut(R.file_path,w,t,n,s,r+1,o)),R.capabilities)try{let T=JSON.parse(R.capabilities);if(T.handler){let[v,k]=T.handler.split("@");if(v){let x=v.split("\\").pop();if(x){let I=n.exports.findClassByName(x);if(I){let M=n.exports.findByNameAndFile(k||"",I.file_path),$,j=I.start_line;M.length>0&&($={start:M[0].start_line,end:M[0].end_line},j=M[0].start_line);let H={type:"component",name:`${x}${k?" :: "+k:""}`,path:ge.relative(t,I.file_path),line:j,details:"Controller Logic (Macro IR)",children:[]};w.children.push(H),s.has(I.file_path+(k?`:${k}`:""))||(s.add(I.file_path+(k?`:${k}`:"")),await ut(I.file_path,H,t,n,s,r+1,o,$))}}}}}catch{}}}let f=u.calls,h=Array.from(f).sort();for(let b of h)if(u.imports.has(b)){let y=u.imports.get(b);if(!y.startsWith(".")){if(["react","react-dom"].includes(y))continue;e.children.push({type:"function",name:b,details:`External: ${y}`,children:[]});continue}let g=Lt(y,i,t);if(g&&Mt.existsSync(g))if(s.has(g))e.children.push({type:"function",name:b,details:"Circular / Already Visited",path:ge.relative(t,g),children:[]});else{s.add(g);let S={type:"file",name:b,details:`Imported from ${ge.basename(g)}`,path:ge.relative(t,g),children:[]};e.children.push(S),await ut(g,S,t,n,s,r+1,o)}}else if(!["log","info","error","warn","print"].includes(b)){let y=n.exports.findByNameGlobal(b);if(y.length===0){let g=b.split(/(?:\.|->|::)+/);if(g.length>1){let S=g[g.length-1];uc.has(S)||(y=n.exports.findByMethodName(S))}}if(y.length>0){let g=y.find(R=>R.file_path===i),S=g||(y.length===1?y[0]:null);if(S){let R=`${S.file_path}:${S.name}`;if(!s.has(R)){s.add(R);let w={type:"component",name:b,details:`Resolved via global index${g?" (local)":""}`,path:ge.relative(t,S.file_path),line:S.start_line,children:[]};e.children.push(w),await ut(S.file_path,w,t,n,s,r+1,o,{start:S.start_line,end:S.end_line})}}}}}catch(a){_.error({filePath:i,error:a.message},"Trace analysis failed"),e.children.push({type:"function",name:"Error",details:a.message,children:[]})}}}async function dr(i,e){let t=$n.resolve(e.dir),n=$n.isAbsolute(i)?i:$n.resolve(t,i);await B(async()=>{le("Execution Trace");let s=de();s.start(`Tracing ${E.cyan(e.symbolName||$n.basename(n))}...`);try{let r=await ur({repoPath:t,filePath:n,symbolName:e.symbolName});s.stop("Trace complete."),r.isError?console.error(E.red(r.content[0].text)):se("Flow Results",r.content[0].text,"magenta")}catch(r){throw s.stop(`Trace failed: ${r.message}`),r}finally{await q(t)}})}import _c from"path";U();dt();P();import{execSync as Br}from"child_process";import Sc from"path";var kn=_.child({module:"shadow-trace"}),mt=class{intentLogs;exports;repoPath;hologramService;constructor(e){let{intentLogs:t,exports:n}=C.getInstance(e);this.intentLogs=t,this.exports=n,this.repoPath=e,this.hologramService=new ue(e)}analyzeGhostChanges(e){let t=e?`${e}..HEAD`:"HEAD~1..HEAD",n=[];try{let r=Br(`git diff --name-only ${t}`,{cwd:this.repoPath,encoding:"utf-8"}).split(`
+`).filter(o=>o.trim()!=="");if(r.length===0)return;kn.info({files:r.length,range:t},"Initiating Shadow Trace analysis...");for(let o of r){let c=Sc.join(this.repoPath,o),l=Br(`git diff -U0 ${t} -- ${o}`,{cwd:this.repoPath,encoding:"utf-8"}).matchAll(/@@ -(\d+)(?:,\d+)? \+(\d+)(?:,\d+)? @@/g);for(let p of l){let d=parseInt(p[2],10),u=this.exports.findAtLine(c,d);u&&(this.intentLogs.create({mission_id:0,file_path:c,symbol_id:u.id,type:"discovery",content:`Shadow Trace: Modified externally in ${t}`,confidence:.8,symbol_name:u.name,signature:u.signature,commit_sha:null}),kn.debug({symbol:u.name},"Logged ghost change"),n.push({from:"external",to:`${o}:${u.name}`,pattern:"git-delta",confidence:.8}))}}n.length>0&&this.hologramService.updateGhostBridges(n),kn.info("Shadow Trace complete.")}catch(s){kn.warn({err:s.message},"Shadow Trace failed: git diff error.")}}};U();import{execSync as ht}from"child_process";var Ln=class{constructor(e,t="refs/notes/shadow"){this.repoPath=e;this.ref=t}addNote(e,t){try{ht(`git notes --ref ${this.ref} add -f -m '${t.replace(/'/g,"'\\''")}' ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch(n){throw new Error(`Failed to add git note to ${e}: ${n.message}`)}}getNote(e){try{return ht(`git notes --ref ${this.ref} show ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"}).trim()}catch{return null}}listNotes(){let e=new Map;try{let t=ht(`git notes --ref ${this.ref} list`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"}).trim();if(!t)return e;let n=t.split(`
+`);for(let s of n){let[r,o]=s.split(" ");if(o){let c=this.getNote(o);c&&e.set(o,c)}}}catch{}return e}removeNote(e){try{ht(`git notes --ref ${this.ref} remove ${e}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch{}}push(e="origin"){try{ht(`git push ${e} ${this.ref}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch(t){throw new Error(`Failed to push git notes to ${e}: ${t.message}`)}}fetch(e="origin"){try{ht(`git fetch ${e} ${this.ref}:${this.ref}`,{cwd:this.repoPath,stdio:["ignore","pipe","ignore"],encoding:"utf8"})}catch{}}};P();var ft=_.child({module:"persistence-service"}),ve=class{gitNotes;repoPath;constructor(e){this.repoPath=e,this.gitNotes=new Ln(e)}async syncMissionToGitNotes(e){let{missions:t,intentLogs:n}=C.getInstance(this.repoPath),s=t.findById(e);if(!s)throw new Error(`Mission ${e} not found`);if(!s.commit_sha){ft.warn({missionId:e},"Cannot sync mission without commit_sha");return}ft.info({missionId:e,commitSha:s.commit_sha},"Syncing mission to Git Notes");let r=t.getArtifacts(e),o=n.findByMission(e,1e3),c=o.find(p=>p.type==="adr"),a=o.filter(p=>p.type==="decision").map(p=>({content:p.content,symbol_name:p.symbol_name,created_at:p.created_at})),l={version:"1.0",mission:{name:s.name,goal:s.goal,status:s.status,strategy_graph:s.strategy_graph,git_branch:s.git_branch,commit_sha:s.commit_sha,parent_id:s.parent_id,verification_context:s.verification_context,outcome_contract:s.outcome_contract,created_at:s.created_at,updated_at:s.updated_at},artifacts:r,adr:c?c.content:null,decisions:a};this.gitNotes.addNote(s.commit_sha,JSON.stringify(l,null,2))}async syncAllToGitNotes(){let{missions:e}=C.getInstance(this.repoPath),t=e.findActive(),n=e.findRecentCompleted(10),s=[...t,...n];for(let r of s)try{await this.syncMissionToGitNotes(r.id)}catch(o){ft.error({missionId:r.id,error:o},"Failed to sync mission")}}async recoverFromGitNotes(){let e=this.gitNotes.listNotes(),{missions:t,intentLogs:n}=C.getInstance(this.repoPath),s=0,r=0;for(let[o,c]of e.entries())try{let a=JSON.parse(c);if(a.version!=="1.0")continue;if(t.findByCommitShas([o]).some(u=>u.name===a.mission.name)){ft.debug({commitSha:o,missionName:a.mission.name},"Mission already exists, skipping recovery");continue}let d=t.create({name:a.mission.name,goal:a.mission.goal,status:a.mission.status,strategy_graph:a.mission.strategy_graph,git_branch:a.mission.git_branch,commit_sha:o,parent_id:a.mission.parent_id,verification_context:a.mission.verification_context,outcome_contract:a.mission.outcome_contract});if(s++,a.adr&&(n.create({mission_id:Number(d),symbol_id:null,file_path:null,type:"adr",content:a.adr,confidence:1,symbol_name:null,signature:null,commit_sha:o}),r++),a.decisions&&a.decisions.length>0)for(let u of a.decisions)n.create({mission_id:Number(d),symbol_id:null,file_path:null,type:"decision",content:u.content,confidence:1,symbol_name:u.symbol_name,signature:null,commit_sha:o}),r++;ft.info({commitSha:o,missionName:a.mission.name,logsRecovered:r},"Re-hydrated mission from Git Notes")}catch(a){ft.error({commitSha:o,error:a},"Failed to parse Git Note for recovery")}return{missionsRecovered:s,logsRecovered:r}}};U();Ot();async function zr(i){let{repoPath:e}=i;try{await z(e),new mt(e).analyzeGhostChanges();let n=new Te(e),s=n.detectAndRepairShifts(),r=n.syncLifecycle(),c=await new ve(e).recoverFromGitNotes(),{HologramService:a}=await Promise.resolve().then(()=>(dt(),Ur)),l=new a(e),p=je(C.getInstance(e),e);l.updateTopography(p);let d=l.computeGravityZones();l.updateGravityZones(d);let u="Shadow Sync complete. Code changes indexed and intent logs updated.";return u+=`
+\u269B\uFE0F Hologram: Refreshed architectural map (${d.length} hotspots).`,s.repaired>0&&(u+=`
+\u2728 Nano-Repair: Fixed ${s.repaired} links.`),c.missionsRecovered>0&&(u+=`
+\u{1F9EC} Re-hydration: Recovered ${c.missionsRecovered} missions.`),{content:[{type:"text",text:u}]}}catch(t){return{content:[{type:"text",text:`Error: ${t.message}`}],isError:!0}}}async function Gr(i,e){let t=_c.resolve(i);await B(async()=>{le("Shadow Sync");let n=de();n.start("Synchronizing intelligence lifecycle...");try{let s=await zr({repoPath:t});n.stop("Sync complete."),s.isError?console.error(E.red(s.content[0].text)):(console.log(""),console.log(s.content[0].text),console.log(""))}catch(s){throw n.stop(`Sync failed: ${s.message}`),s}finally{await q(t)}})}Ot();U();P();dt();import Jr from"path";U();Ot();dt();import Le from"path";async function qr(i){let{repoPath:e}=i;await z(e);let t=C.getInstance(e),n=je(t,e),r=new ue(e).getSnapshot(),o=[],c=[],a=Object.values(n.layers.Entry.topFiles).map(u=>u.path),l=new Set(Object.values(n.layers.Data.topFiles).map(u=>u.path));for(let u of a){let m=Le.isAbsolute(u)?u:Le.join(e,u),f=t.imports.findByFile(m);for(let h of f)h.resolved_path&&l.has(Le.relative(e,h.resolved_path))&&o.push(`\u2694\uFE0F LAYER BYPASS: \`${Le.relative(e,u)}\` directly imports Data layer \`${Le.relative(e,h.resolved_path)}\`. Should go through Logic.`)}let p=r.gravity?.hotspots||[];for(let u of p){let m=Dt(u.filePath,t);(m.layer==="Utility"||m.layer==="Unknown")&&u.gravity>50&&c.push(`\u{1F6A8} GRAVITY ANOMALY: \`${Le.relative(e,u.filePath)}\` has high gravity (${u.gravity.toFixed(0)}) but is classified as ${m.layer}. Consider promoting to Core Logic.`)}for(let u of a){let m=Le.isAbsolute(u)?u:Le.join(e,u),f=t.exports.findByFile(m);f.length>10&&c.push(`\u{1F388} ENTRY BLOAT: \`${Le.relative(e,u)}\` exports ${f.length} symbols. Entry handlers should be thin interfaces.`)}let d=`# \u{1F575}\uFE0F Architectural Scout Report
+
+`;return o.length===0&&c.length===0?d+=`\u2705 No significant architectural drift detected. The structure remains "Legit".
 `:(o.length>0&&(d+=`## \u274C Structural Violations
 `,o.forEach(u=>d+=`- ${u}
 `),d+=`
-`),l.length>0&&(d+=`## \u26A0\uFE0F Architectural Warnings
-`,l.forEach(u=>d+=`- ${u}
+`),c.length>0&&(d+=`## \u26A0\uFE0F Architectural Warnings
+`,c.forEach(u=>d+=`- ${u}
 `),d+=`
-`)),{content:[{type:"text",text:d}]}}async function zr(s,e,t){let n=e?Br.resolve(process.cwd(),e):process.cwd();if(s==="init"){_.info('Running full initialization (same as "index --force")...'),await j(n,void 0,!0,!0);return}if(s==="tree"){_.info('For tree view, please use the "tree" command.');return}if(s==="topography"){await j(n);let i=k.getInstance(n),r=ut(i,n);console.log(`
-\u{1F3D7}\uFE0F  Architecture Summary for ${Br.basename(n)}
+`)),{content:[{type:"text",text:d}]}}async function Yr(i,e,t){let n=e?Jr.resolve(process.cwd(),e):process.cwd();if(i==="init"){_.info('Running full initialization (same as "index --force")...'),await z(n,void 0,!0,!0);return}if(i==="tree"){_.info('For tree view, please use the "tree" command.');return}if(i==="topography"){await z(n);let s=C.getInstance(n),r=je(s,n);console.log(`
+\u{1F3D7}\uFE0F  Architecture Summary for ${Jr.basename(n)}
 `),console.log(`Detected Pattern: **${r.pattern}** (Confidence: ${r.patternConfidence.toFixed(0)}%)`),r.insights.length>0&&(console.log(`
-Insights:`),r.insights.forEach(a=>console.log(`- ${a}`))),console.log(`
-Layer Distribution:`);let o=["Entry","Logic","Data","Utility","Infrastructure","Test","Types","Unknown"],l=Object.values(r.layers).reduce((a,p)=>a+p.count,0),c=a=>{switch(a){case"Entry":return"\u{1F6AA}";case"Logic":return"\u2699\uFE0F";case"Data":return"\u{1F4BE}";case"Utility":return"\u{1F527}";case"Infrastructure":return"\u{1F3D7}\uFE0F";case"Test":return"\u{1F9EA}";case"Types":return"\u{1F4DD}";default:return"\u2753"}};o.forEach(a=>{let p=r.layers[a],d=l>0?(p.count/l*100).toFixed(1):"0.0";console.log(`${c(a)} ${a.padEnd(14)} | ${p.count.toString().padStart(5)} files | ${d}%`)}),console.log(`
-Top Files by Layer:`),o.forEach(a=>{let p=r.layers[a];p.count!==0&&(console.log(`
-${c(a)} ${a}`),p.topFiles.forEach(d=>{console.log(`  - ${d.path} (${d.confidence}% conf)`),d.signals.length>0&&console.log(`    \u2514\u2500 ${d.signals.slice(0,1).join(", ")}`)}))});return}if(s==="scout"){let i=await jr({repoPath:n});console.log(i.content[0].text);return}if(s==="hologram"){let i=new de(n);console.log(JSON.stringify(i.getSnapshot(),null,2));return}_.error(`Unknown recon mode: ${s}. Available: init, topography, scout, hologram`)}import Ht from"path";F();var Ft=class{static extractSnippet(e,t,n=300){if(!e||!t)return"";let i=t.toLowerCase().split(/\s+/).filter(u=>u.length>2&&!["the","and","for","with","from"].includes(u));if(i.length===0)return e.slice(0,n)+"...";let r=e.split(`
-`),o=new Array(r.length).fill(0);for(let u=0;u<r.length;u++){let m=r[u].toLowerCase(),h=0,b=0;for(let E of i)m.includes(E)&&(h++,b++);(m.includes("export ")||m.includes("class ")||m.includes("function ")||m.includes("interface "))&&(h+=1),o[u]=b*10+h}let l=0,c=-1,a=5;for(let u=0;u<=r.length-a;u++){let m=0;for(let h=0;h<a;h++)m+=o[u+h];m>c&&(c=m,l=u)}if(c<=0)return e.slice(0,n).trim()+"...";let d=r.slice(l,l+a).join(`
-`).trim();return l>0&&(d=`...
-`+d),l+a<r.length&&(d=d+`
-...`),d.length>n?d.slice(0,n)+"...":d}static calculateLexicalScore(e,t){if(!e||!t)return 0;let n=t.toLowerCase().split(/\s+/).filter(o=>o.length>2&&!["the","and","for","with","from"].includes(o));if(n.length===0)return 0;let i=0,r=e.toLowerCase();for(let o of n)if(r.includes(o)){i+=1;let l=new RegExp(`\\b${o}`,"gi"),c=r.match(l);c&&(i+=Math.min(c.length*.2,2)),new RegExp(`(class|function|export|interface|enum|type)\\s+${o}`,"i").test(e)&&(i+=1.5)}return i/n.length}};F();N();var Ue=_.child({module:"clean-sweep"}),xi=class{files;intentLogs;constructor(e){let{files:t,intentLogs:n}=k.getInstance(e);this.files=t,this.intentLogs=n}pruneOrphans(){Ue.info("Starting orphan pruning...");let e=0,t=0,n=this.intentLogs.findOrphans();Ue.info({orphanCount:n.length},"Found orphaned logs");for(let o of n)o.file_path&&this.files.exists(o.file_path)?(this.intentLogs.markAsLapsed(o.id),t++,Ue.debug({logId:o.id,symbolName:o.symbol_name},"Converted to lapsed intent")):(this.intentLogs.delete(o.id),e++,Ue.debug({logId:o.id},"Deleted orphaned log"));let i=this.intentLogs.findLogsForMissingFiles();for(let o of i)this.intentLogs.delete(o.id),e++;let r=this.intentLogs.findRecentDecisionActivity(1e3).length;return Ue.info({deleted:e,converted:t},"Orphan pruning complete"),{deleted:e,converted:t,retained:r}}},Ri=class{lambda;constructor(e=.01){this.lambda=e}calculateScore(e,t){let i=(Math.floor(Date.now()/1e3)-t)/(3600*24),r=Math.exp(-this.lambda*i);return e*r}scoreResults(e){return e.map(t=>({...t,decayed_score:this.calculateScore(t.score,t.created_at)}))}},Ti=class{missions;constructor(e){let{missions:t}=k.getInstance(e);this.missions=t}findColdMissions(){let e=Math.floor(Date.now()/1e3)-604800,t=this.missions.findColdMissions(e,10);return Ue.info({count:t.length},"Found cold missions for compaction"),t}markDistilled(e){this.missions.update(e,{status:"distilled"})}},Ln=class{pruner;scorer;compactor;constructor(e){this.pruner=new xi(e),this.scorer=new Ri,this.compactor=new Ti(e)}runMaintenance(){Ue.info("Initiating Clean Sweep maintenance protocol...");let e=this.pruner.pruneOrphans(),t=this.compactor.findColdMissions();return Ue.info("Clean Sweep maintenance complete"),{pruning:e,compaction:{eligible:t.length}}}getScorer(){return this.scorer}getCompactor(){return this.compactor}};F();N();var Gr=_.child({module:"lineage-service"}),tt=class{repoPath;constructor(e){this.repoPath=e}getAncestorMissionIds(e=50){try{let t=Gs(this.repoPath,e);if(t.length===0)return[];let{missions:n}=k.getInstance(this.repoPath),r=n.findByCommitShas(t).map(o=>o.id);return r.length>0&&Gr.debug({count:r.length},"Identified ancestor missions for gravity bleed"),r}catch(t){return Gr.warn({err:t.message},"Failed to identify ancestor missions"),[]}}};var gc={Solid:1,Liquid:.8,Virtual:.4,Intel:.2,Phantom:.05},$e=class{static classify(e,t){let n=e.toLowerCase();if(t?.content){let i=t.content;if(i.includes("describe(")||i.includes("test(")||i.includes("it(")||i.includes("expect(")||i.includes('from "@jest/globals"')||i.includes('from "vitest"'))return"Virtual"}return t?.exports&&(t.exports.some(r=>r.kind==="ClassDeclaration"||r.kind==="Class")||t.exports.length>5),n.includes("/dist/")||n.includes("/build/")||n.includes("/.generated/")||n.includes("/node_modules/")||n.endsWith(".map")||n.endsWith(".log")?"Phantom":n.includes("/test/")||n.includes("/tests/")||n.includes("/__tests__/")||n.includes("/__mocks__/")||n.includes(".spec.")||n.includes(".test.")||n.includes("/e2e/")||n.includes("/test-utils/")?"Virtual":n.includes("/examples/")||n.includes("/fixtures/")||n.includes("/mocks/")||n.includes("/stories/")||n.includes("/samples/")||n.includes("/docs/")?"Intel":n.includes("/src/")||n.includes("/lib/")||n.includes("/app/")||n.includes("/core/")||n.includes("/logic/")||n.includes("/domain/")||n.includes("/services/")||n.includes("/controllers/")||n.includes("/handlers/")||n.includes("/repositories/")||n.includes("/models/")||n.includes("/packages/")&&!n.includes("/packages/config/")||n.includes("/backends/")||t?.exports&&(t.exports.some(i=>i.kind==="ClassDeclaration"||i.kind==="Class")||t.exports.length>5)?"Solid":"Liquid"}static mapClassificationToTier(e){let t=e.toLowerCase();return t==="service"||t==="repository"||t==="model"||t==="controller"||t==="handler"||t==="component"||t==="hook"||t==="titanium"||t==="solid"?"Solid":t==="test"||t==="iron"||t==="virtual"?"Virtual":t==="lead"||t==="intel"?"Intel":t==="ghost"||t==="error"||t==="phantom"?"Phantom":"Liquid"}static getMultiplier(e,t){let n=t?this.mapClassificationToTier(t):this.classify(e);return gc[n]}};N();function yc(s,e){let t=[];for(let n=0;n<=e.length;n++)t[n]=[n];for(let n=0;n<=s.length;n++)t[0][n]=n;for(let n=1;n<=e.length;n++)for(let i=1;i<=s.length;i++)e.charAt(n-1)===s.charAt(i-1)?t[n][i]=t[n-1][i-1]:t[n][i]=Math.min(t[n-1][i-1]+1,t[n][i-1]+1,t[n-1][i]+1);return t[e.length][s.length]}function bc(s,e){let t=yc(s.toLowerCase(),e.toLowerCase()),n=Math.max(s.length,e.length);return Math.round((n-t)/n*100)}function qr(s){let e=[],t="";for(let n=0;n<s.length;n++){let i=s[n],r=i>="A"&&i<="Z",o=i>="a"&&i<="z";r&&t.length>0?(e.push(t),t=i):o||r?t+=i:t.length>0&&(e.push(t),t="")}return t.length>0&&e.push(t),e}function Ec(s,e){let t=qr(e),n=s.toLowerCase();if(t.map(o=>o[0].toLowerCase()).join("")===n)return!0;let r=0;for(let o of t){if(r>=s.length)break;let l=o.toLowerCase();if(l.startsWith(n.slice(r))){r=s.length;break}l[0]===n[r]&&r++}return r===s.length}function Sc(s,e){return qr(e).map(i=>i[0].toLowerCase()).join("")===s.toLowerCase()}function _c(s,e){let t=s.toLowerCase(),n=e.toLowerCase();if(s===e)return{matchType:"exact",score:100};if(t===n)return{matchType:"exact-case-insensitive",score:98};if(n.startsWith(t))return{matchType:"prefix",score:90+s.length/e.length*8};if(n.endsWith(t))return{matchType:"suffix",score:80+s.length/e.length*8};if(n.includes(t)){let r=s.length/e.length,o=n.indexOf(t)/e.length;return{matchType:"substring",score:70+r*10-o*5}}return Sc(s,e)?{matchType:"acronym",score:75}:Ec(s,e)?{matchType:"camel-case",score:65}:{matchType:"levenshtein",score:bc(s,e)*.6}}function $n(s,e,t=50,n=5){let i=[];for(let r of e){let{matchType:o,score:l}=_c(s,r);if(l>=t){let a={exact:1e3,"exact-case-insensitive":900,prefix:800,suffix:700,substring:600,acronym:550,"camel-case":500,levenshtein:100}[o]+l;i.push({match:r,score:l,matchType:o,rank:a})}}return i.sort((r,o)=>o.rank!==r.rank?o.rank-r.rank:o.score!==r.score?o.score-r.score:r.match.length-o.match.length),i.slice(0,n)}dt();var je=class s{constructor(e){this.repoPath=e}get filesRepo(){return k.getInstance(this.repoPath).files}get exportsRepo(){return k.getInstance(this.repoPath).exports}static normalizeFileType(e){if(e==null)return;let t=Array.isArray(e)?e:e.split(",").map(n=>n.trim().replace(/^\./,""));return t.filter(Boolean).length?t:void 0}static matchesFilters(e,t,n,i){if(t.fileType?.length){let r=e.replace(/^.*\./,"").toLowerCase();if(!t.fileType.some(o=>o.toLowerCase()===r))return!1}if(t.layer!=null||t.excludeLayers&&t.excludeLayers.length>0){let r=i!=null?$e.mapClassificationToTier(i):$e.classify(e);if(t.layer!=null&&r!==t.layer||t.excludeLayers?.includes(r))return!1}if(t.dateModifiedAfter!=null||t.dateModifiedBefore!=null){if(n==null)return!1;let r=n>1e10?n/1e3:n;if(t.dateModifiedAfter!=null&&r<t.dateModifiedAfter||t.dateModifiedBefore!=null&&r>t.dateModifiedBefore)return!1}return!0}async searchByPath(e,t,n,i,r){let o=e.toLowerCase().split(/\s+/).filter(Boolean),l=this.filesRepo.findByPathKeywords(o,Math.min((t??50)*(r?oe.FILTERED_QUERY_LIMIT_MULTIPLIER:1),ot.MAX_LIMIT));r&&(l=l.filter(p=>s.matchesFilters(p.path,i,p.mtime,p.classification)),l=l.slice(0,t??50));let c=p=>p.replace(this.repoPath,"").replace(/^\//,"");return{content:[{type:"text",text:l.length===0?`No indexed files match path/filename: "${e}".
+Insights:`),r.insights.forEach(l=>console.log(`- ${l}`))),console.log(`
+Layer Distribution:`);let o=["Entry","Logic","Data","Utility","Infrastructure","Test","Types","Unknown"],c=Object.values(r.layers).reduce((l,p)=>l+p.count,0),a=l=>{switch(l){case"Entry":return"\u{1F6AA}";case"Logic":return"\u2699\uFE0F";case"Data":return"\u{1F4BE}";case"Utility":return"\u{1F527}";case"Infrastructure":return"\u{1F3D7}\uFE0F";case"Test":return"\u{1F9EA}";case"Types":return"\u{1F4DD}";default:return"\u2753"}};o.forEach(l=>{let p=r.layers[l],d=c>0?(p.count/c*100).toFixed(1):"0.0";console.log(`${a(l)} ${l.padEnd(14)} | ${p.count.toString().padStart(5)} files | ${d}%`)}),console.log(`
+Top Files by Layer:`),o.forEach(l=>{let p=r.layers[l];p.count!==0&&(console.log(`
+${a(l)} ${l}`),p.topFiles.forEach(d=>{console.log(`  - ${d.path} (${d.confidence}% conf)`),d.signals.length>0&&console.log(`    \u2514\u2500 ${d.signals.slice(0,1).join(", ")}`)}))});return}if(i==="scout"){let s=await qr({repoPath:n});console.log(s.content[0].text);return}if(i==="hologram"){let s=new ue(n);console.log(JSON.stringify(s.getSnapshot(),null,2));return}_.error(`Unknown recon mode: ${i}. Available: init, topography, scout, hologram`)}import jt from"path";U();var Ft=class{static extractSnippet(e,t,n=300){if(!e||!t)return"";let s=t.toLowerCase().split(/\s+/).filter(u=>u.length>2&&!["the","and","for","with","from"].includes(u));if(s.length===0)return e.slice(0,n)+"...";let r=e.split(`
+`),o=new Array(r.length).fill(0);for(let u=0;u<r.length;u++){let m=r[u].toLowerCase(),f=0,h=0;for(let b of s)m.includes(b)&&(f++,h++);(m.includes("export ")||m.includes("class ")||m.includes("function ")||m.includes("interface "))&&(f+=1),o[u]=h*10+f}let c=0,a=-1,l=5;for(let u=0;u<=r.length-l;u++){let m=0;for(let f=0;f<l;f++)m+=o[u+f];m>a&&(a=m,c=u)}if(a<=0)return e.slice(0,n).trim()+"...";let d=r.slice(c,c+l).join(`
+`).trim();return c>0&&(d=`...
+`+d),c+l<r.length&&(d=d+`
+...`),d.length>n?d.slice(0,n)+"...":d}static calculateLexicalScore(e,t){if(!e||!t)return 0;let n=t.toLowerCase().split(/\s+/).filter(o=>o.length>2&&!["the","and","for","with","from"].includes(o));if(n.length===0)return 0;let s=0,r=e.toLowerCase();for(let o of n)if(r.includes(o)){s+=1;let c=new RegExp(`\\b${o}`,"gi"),a=r.match(c);a&&(s+=Math.min(a.length*.2,2)),new RegExp(`(class|function|export|interface|enum|type)\\s+${o}`,"i").test(e)&&(s+=1.5)}return s/n.length}};U();P();var Ue=_.child({module:"clean-sweep"}),Rs=class{files;intentLogs;constructor(e){let{files:t,intentLogs:n}=C.getInstance(e);this.files=t,this.intentLogs=n}pruneOrphans(){Ue.info("Starting orphan pruning...");let e=0,t=0,n=this.intentLogs.findOrphans();Ue.info({orphanCount:n.length},"Found orphaned logs");for(let o of n)o.file_path&&this.files.exists(o.file_path)?(this.intentLogs.markAsLapsed(o.id),t++,Ue.debug({logId:o.id,symbolName:o.symbol_name},"Converted to lapsed intent")):(this.intentLogs.delete(o.id),e++,Ue.debug({logId:o.id},"Deleted orphaned log"));let s=this.intentLogs.findLogsForMissingFiles();for(let o of s)this.intentLogs.delete(o.id),e++;let r=this.intentLogs.findRecentDecisionActivity(1e3).length;return Ue.info({deleted:e,converted:t},"Orphan pruning complete"),{deleted:e,converted:t,retained:r}}},vs=class{lambda;constructor(e=.01){this.lambda=e}calculateScore(e,t){let s=(Math.floor(Date.now()/1e3)-t)/(3600*24),r=Math.exp(-this.lambda*s);return e*r}scoreResults(e){return e.map(t=>({...t,decayed_score:this.calculateScore(t.score,t.created_at)}))}},ws=class{missions;constructor(e){let{missions:t}=C.getInstance(e);this.missions=t}findColdMissions(){let e=Math.floor(Date.now()/1e3)-604800,t=this.missions.findColdMissions(e,10);return Ue.info({count:t.length},"Found cold missions for compaction"),t}markDistilled(e){this.missions.update(e,{status:"distilled"})}},Nn=class{pruner;scorer;compactor;constructor(e){this.pruner=new Rs(e),this.scorer=new vs,this.compactor=new ws(e)}runMaintenance(){Ue.info("Initiating Clean Sweep maintenance protocol...");let e=this.pruner.pruneOrphans(),t=this.compactor.findColdMissions();return Ue.info("Clean Sweep maintenance complete"),{pruning:e,compaction:{eligible:t.length}}}getScorer(){return this.scorer}getCompactor(){return this.compactor}};U();P();var Vr=_.child({module:"lineage-service"}),nt=class{repoPath;constructor(e){this.repoPath=e}getAncestorMissionIds(e=50){try{let t=Vi(this.repoPath,e);if(t.length===0)return[];let{missions:n}=C.getInstance(this.repoPath),r=n.findByCommitShas(t).map(o=>o.id);return r.length>0&&Vr.debug({count:r.length},"Identified ancestor missions for gravity bleed"),r}catch(t){return Vr.warn({err:t.message},"Failed to identify ancestor missions"),[]}}};var xc={Solid:1,Liquid:.8,Virtual:.4,Intel:.2,Phantom:.05},be=class{static classify(e,t){let n=e.toLowerCase();if(t?.content){let s=t.content;if(s.includes("describe(")||s.includes("test(")||s.includes("it(")||s.includes("expect(")||s.includes('from "@jest/globals"')||s.includes('from "vitest"'))return"Virtual"}return t?.exports&&(t.exports.some(r=>r.kind==="ClassDeclaration"||r.kind==="Class")||t.exports.length>5),n.includes("/dist/")||n.includes("/build/")||n.includes("/.generated/")||n.includes("/node_modules/")||n.endsWith(".map")||n.endsWith(".log")?"Phantom":n.includes("/test/")||n.includes("/tests/")||n.includes("/__tests__/")||n.includes("/__mocks__/")||n.includes(".spec.")||n.includes(".test.")||n.includes("/e2e/")||n.includes("/test-utils/")?"Virtual":n.includes("/examples/")||n.includes("/fixtures/")||n.includes("/mocks/")||n.includes("/stories/")||n.includes("/samples/")||n.includes("/docs/")?"Intel":n.includes("/src/")||n.includes("/lib/")||n.includes("/app/")||n.includes("/core/")||n.includes("/logic/")||n.includes("/domain/")||n.includes("/services/")||n.includes("/controllers/")||n.includes("/handlers/")||n.includes("/repositories/")||n.includes("/models/")||n.includes("/packages/")&&!n.includes("/packages/config/")||n.includes("/backends/")||t?.exports&&(t.exports.some(s=>s.kind==="ClassDeclaration"||s.kind==="Class")||t.exports.length>5)?"Solid":"Liquid"}static mapClassificationToTier(e){let t=e.toLowerCase();return t==="service"||t==="repository"||t==="model"||t==="controller"||t==="handler"||t==="component"||t==="hook"||t==="titanium"||t==="solid"?"Solid":t==="test"||t==="iron"||t==="virtual"?"Virtual":t==="lead"||t==="intel"?"Intel":t==="ghost"||t==="error"||t==="phantom"?"Phantom":"Liquid"}static getMultiplier(e,t){let n=t?this.mapClassificationToTier(t):this.classify(e);return xc[n]}};P();function Tc(i,e){let t=[];for(let n=0;n<=e.length;n++)t[n]=[n];for(let n=0;n<=i.length;n++)t[0][n]=n;for(let n=1;n<=e.length;n++)for(let s=1;s<=i.length;s++)e.charAt(n-1)===i.charAt(s-1)?t[n][s]=t[n-1][s-1]:t[n][s]=Math.min(t[n-1][s-1]+1,t[n][s-1]+1,t[n-1][s]+1);return t[e.length][i.length]}function Rc(i,e){let t=Tc(i.toLowerCase(),e.toLowerCase()),n=Math.max(i.length,e.length);return Math.round((n-t)/n*100)}function Qr(i){let e=[],t="";for(let n=0;n<i.length;n++){let s=i[n],r=s>="A"&&s<="Z",o=s>="a"&&s<="z";r&&t.length>0?(e.push(t),t=s):o||r?t+=s:t.length>0&&(e.push(t),t="")}return t.length>0&&e.push(t),e}function vc(i,e){let t=Qr(e),n=i.toLowerCase();if(t.map(o=>o[0].toLowerCase()).join("")===n)return!0;let r=0;for(let o of t){if(r>=i.length)break;let c=o.toLowerCase();if(c.startsWith(n.slice(r))){r=i.length;break}c[0]===n[r]&&r++}return r===i.length}function wc(i,e){return Qr(e).map(s=>s[0].toLowerCase()).join("")===i.toLowerCase()}function Ic(i,e){let t=i.toLowerCase(),n=e.toLowerCase();if(i===e)return{matchType:"exact",score:100};if(t===n)return{matchType:"exact-case-insensitive",score:98};if(n.startsWith(t))return{matchType:"prefix",score:90+i.length/e.length*8};if(n.endsWith(t))return{matchType:"suffix",score:80+i.length/e.length*8};if(n.includes(t)){let r=i.length/e.length,o=n.indexOf(t)/e.length;return{matchType:"substring",score:70+r*10-o*5}}return wc(i,e)?{matchType:"acronym",score:75}:vc(i,e)?{matchType:"camel-case",score:65}:{matchType:"levenshtein",score:Rc(i,e)*.6}}function Ht(i,e,t=50,n=5){let s=[];for(let r of e){let{matchType:o,score:c}=Ic(i,r);if(c>=t){let l={exact:1e3,"exact-case-insensitive":900,prefix:800,suffix:700,substring:600,acronym:550,"camel-case":500,levenshtein:100}[o]+c;s.push({match:r,score:c,matchType:o,rank:l})}}return s.sort((r,o)=>o.rank!==r.rank?o.rank-r.rank:o.score!==r.score?o.score-r.score:r.match.length-o.match.length),s.slice(0,n)}dt();var Be=class i{constructor(e){this.repoPath=e}get filesRepo(){return C.getInstance(this.repoPath).files}get exportsRepo(){return C.getInstance(this.repoPath).exports}static normalizeFileType(e){if(e==null)return;let t=Array.isArray(e)?e:e.split(",").map(n=>n.trim().replace(/^\./,""));return t.filter(Boolean).length?t:void 0}static matchesFilters(e,t,n,s){if(t.fileType?.length){let r=e.replace(/^.*\./,"").toLowerCase();if(!t.fileType.some(o=>o.toLowerCase()===r))return!1}if(t.layer!=null||t.excludeLayers&&t.excludeLayers.length>0){let r=s!=null?be.mapClassificationToTier(s):be.classify(e);if(t.layer!=null&&r!==t.layer||t.excludeLayers?.includes(r))return!1}return!0}async searchByPath(e,t,n,s,r,o=!1){let c=e.toLowerCase().split(/\s+/).filter(Boolean),a=this.filesRepo.findByPathKeywords(c,Math.min((t??50)*(r?ae.FILTERED_QUERY_LIMIT_MULTIPLIER:1),at.MAX_LIMIT));r&&(a=a.filter(d=>i.matchesFilters(d.path,s,d.mtime,d.classification)),a=a.slice(0,t??50));let l=d=>d.replace(this.repoPath,"").replace(/^\//,"");if(a.length===0)return{content:[{type:"text",text:`No indexed files match path/filename: "${e}".
+
+If the repo is not indexed, run shadow_recon_onboard then shadow_sync_trace. Otherwise try broader keywords.`}]};if(o){let u=new ue(this.repoPath).getSection("gravity"),m=new Map;if(u?.hotspots)for(let b of u.hotspots){let y=m.get(b.filePath)||0;m.set(b.filePath,y+b.gravity)}let f=a.map(b=>{let y=m.get(b.path)||0,g=b.classification?be.mapClassificationToTier(b.classification):be.classify(b.path);return{...b,gravity:y,layer:g}});return f.sort((b,y)=>y.gravity-b.gravity),{content:[{type:"text",text:`# Resolved paths: "${e}" (Ranked by Gravity)
+
+${f.length} file(s):
 
-If the repo is not indexed, run shadow_recon_onboard then shadow_sync_trace. Otherwise try broader keywords.`:`# Resolved paths: "${e}"
+`+f.map((b,y)=>{let g=b.gravity>50?" \u269B\uFE0F":b.gravity>0?" \u2022":"",S=b.gravity>0?` [G:${Math.round(b.gravity)}]`:"";return`${y+1}. \`${l(b.path)}\` (${b.layer})${g}${S}`}).join(`
+`)+`
+
+> **Legend**: \u269B\uFE0F = High-gravity hotspot (>50), \u2022 = Has gravity, G = Gravity score`}]}}return{content:[{type:"text",text:`# Resolved paths: "${e}"
 
-${l.length} file(s):
+${a.length} file(s):
 
-`+l.map((p,d)=>`${d+1}. \`${c(p.path)}\`${p.classification?` (${p.classification})`:""}`).join(`
-`)}]}}async searchByConcept(e,t,n,i,r,o=!1){_.info({repoPath:this.repoPath,query:e},"Searching by concept (Semantic Analysis)...");let l=await ii(e),c=y=>y.replace(this.repoPath,"").replace(/^\//,"");if(l){let y=await this.findConceptMatches(e,l,i,r,t*2);if(y.length>0){let S=y.length,w=y.slice(n,n+t),T=n+t<S?`
-> **Note**: More results available. Use \`offset: ${n+t}\` to see the next page.`:"",I=o?`
-> _Compact mode: snippets omitted_`:S>20&&!o?"\n> \u{1F4A1} **Tip**: Use `compact: true` to reduce output size (omits snippets).":"",x=`# Semantic Concept Search: "${e}"
+`+a.map((d,u)=>`${u+1}. \`${l(d.path)}\`${d.classification?` (${d.classification})`:""}`).join(`
+`)}]}}async searchByConcept(e,t,n,s,r,o=!1){_.info({repoPath:this.repoPath,query:e},"Searching by concept (Semantic Analysis)...");let c=await rs(e),a=g=>g.replace(this.repoPath,"").replace(/^\//,"");if(c){let g=await this.findConceptMatches(e,c,s,r,t*2,0);if(g.length>0){let S=g.length,R=g.slice(n,n+t),T=n+t<S?`
+> **Note**: More results available. Use \`offset: ${n+t}\` to see the next page.`:"",v=o?`
+> _Compact mode: snippets omitted_`:S>20&&!o?"\n> \u{1F4A1} **Tip**: Use `compact: true` to reduce output size (omits snippets).":"",k=`# Semantic Concept Search: "${e}"
 
-Showing ${w.length} of ${S} relevant file(s) (offset: ${n}, limit: ${t})${T}${I}
+Showing ${R.length} of ${S} relevant file(s) (offset: ${n}, limit: ${t})${T}${v}
 
-`,R=new de(this.repoPath).getSection("gravity"),v=new Map;if(R?.hotspots)for(let L of R.hotspots)v.set(L.filePath,L.gravity);return{content:[{type:"text",text:o?x+w.map((L,H)=>{let B=c(L.path),ne=Math.round((L.decayedScore||0)*100),D=v.get(L.path)?" \u269B\uFE0F":"";return`${n+H+1}. \`${B}\`${D} (${ne}%) - ${L.summary||"No summary"}`}).join(`
-`):x+w.map((L,H)=>{let B=c(L.path),ne=Math.round((L.decayedScore||0)*100),W=v.get(L.path),D=W?" \u269B\uFE0F **CORE**":"",M=W&&W>50?`
-> \u26A0\uFE0F **STRATEGIC RISK**: High-gravity hotspot (${W.toFixed(0)}). Modifications may have significant architectural impact.`:"";return`## ${n+H+1}. ${B}${D} (${ne}% Match)
-> **Rationale**: ${L.rationale}${M}
+`,x=new ue(this.repoPath).getSection("gravity"),I=new Map;if(x?.hotspots)for(let $ of x.hotspots)I.set($.filePath,$.gravity);return{content:[{type:"text",text:o?k+R.map(($,j)=>{let H=a($.path),N=Math.round(($.decayedScore||0)*100),A=I.get($.path)?" \u269B\uFE0F":"";return`${n+j+1}. \`${H}\`${A} (${N}%) - ${$.summary||"No summary"}`}).join(`
+`):k+R.map(($,j)=>{let H=a($.path),N=Math.round(($.decayedScore||0)*100),L=I.get($.path),A=L?" \u269B\uFE0F **CORE**":"",D=L&&L>50?`
+> \u26A0\uFE0F **STRATEGIC RISK**: High-gravity hotspot (${L.toFixed(0)}). Modifications may have significant architectural impact.`:"";return`## ${n+j+1}. ${H}${A} (${N}% Match)
+> **Rationale**: ${$.rationale}${D}
 
-`+(L.snippet?`**Matched Snippet**:
+`+($.snippet?`**Matched Snippet**:
 \`\`\`typescript
-${L.snippet}
+${$.snippet}
 \`\`\`
 
-`:"")+`**Summary**: ${L.summary||"No summary available"}
+`:"")+`**Summary**: ${$.summary||"No summary available"}
 `}).join(`
-`)}]}}}let a=e.replace(/[^\w\s]/g," ").trim(),p=this.filesRepo.findFts(a,(t+n)*(r?oe.FILTERED_QUERY_LIMIT_MULTIPLIER:1));r&&(p=p.filter(y=>s.matchesFilters(y.path,i,y.mtime,y.classification)));let d=p.slice(n,n+t);if(d.length===0&&n===0){let y=this.filesRepo.getStats(),S=e.toLowerCase().split(/\s+/),w=this.filesRepo.findByPathKeywords(S,t);return r&&(w=w.filter(C=>s.matchesFilters(C.path,i,C.mtime,C.classification))),w.length>0?{content:[{type:"text",text:`# Concept Search: "${e}"
+`)}]}}}let l=e.replace(/[^\w\s]/g," ").trim(),p=this.filesRepo.findFts(l,(t+n)*(r?ae.FILTERED_QUERY_LIMIT_MULTIPLIER:1));r&&(p=p.filter(g=>i.matchesFilters(g.path,s,g.mtime,g.classification)));let d=p.slice(n,n+t);if(d.length===0&&n===0){let g=this.filesRepo.getStats(),S=e.toLowerCase().split(/\s+/),R=this.filesRepo.findByPathKeywords(S,t);return r&&(R=R.filter(w=>i.matchesFilters(w.path,s,w.mtime,w.classification))),R.length>0?{content:[{type:"text",text:`# Concept Search: "${e}"
 
-\u26A0\uFE0F No semantic matches in file summaries (${y.withSummary}/${y.total} indexed).
+\u26A0\uFE0F No semantic matches in file summaries (${g.withSummary}/${g.total} indexed).
 
-Found ${w.length} file(s) with matching paths:
+Found ${R.length} file(s) with matching paths:
 
-`+w.map((T,I)=>`${I+1}. \`${c(T.path)}\` (${T.classification||"Unknown"})`).join(`
+`+R.map((T,v)=>`${v+1}. \`${a(T.path)}\` (${T.classification||"Unknown"})`).join(`
 `)}]}:{content:[{type:"text",text:`No files found matching concept: "${e}"
 
-Summary Stats: ${y.withSummary}/${y.total} summaries.
+Summary Stats: ${g.withSummary}/${g.total} summaries.
 
-Try a symbol search: shadow_search_symbol({ query: "${e}", repoPath })`}]}}let u=p.length,h=n+t<u?`
-> Use \`offset: ${n+t}\` for more results.`:"",b=o?`
-> _Compact mode_`:u>20&&!o?"\n> \u{1F4A1} Use `compact: true` to reduce output size.":"",E=`# Concept Search (FTS Fallback): "${e}"
+Try a symbol search: shadow_search_symbol({ query: "${e}", repoPath })`}]}}let u=p.length,f=n+t<u?`
+> Use \`offset: ${n+t}\` for more results.`:"",h=o?`
+> _Compact mode_`:u>20&&!o?"\n> \u{1F4A1} Use `compact: true` to reduce output size.":"",b=`# Concept Search (FTS Fallback): "${e}"
 
-Showing ${d.length} of ${u} relevant file(s)${h}${b}
+Showing ${d.length} of ${u} relevant file(s)${f}${h}
 
-`;return{content:[{type:"text",text:o?E+d.map((y,S)=>`${n+S+1}. \`${c(y.path)}\``).join(`
-`):E+d.map((y,S)=>`## ${n+S+1}. ${c(y.path)}
+`;return{content:[{type:"text",text:o?b+d.map((g,S)=>`${n+S+1}. \`${a(g.path)}\``).join(`
+`):b+d.map((g,S)=>`## ${n+S+1}. ${a(g.path)}
 
-**Summary**: ${y.summary||"No summary available"}
+**Summary**: ${g.summary||"No summary available"}
 `).join(`
-`)}]}}async searchBySymbol(e,t,n,i,r){let o=e.toLowerCase(),l=x=>x.replace(this.repoPath,"").replace(/^\//,""),c;try{c=this.exportsRepo.findFts(`"${e}" OR ${e}*`,t+50)}catch{c=this.exportsRepo.findByPartialName(e,t+50)}if(c.length===0){let x=this.exportsRepo.getAllNames(5e3),$=$n(e,x,50,5);if($.length>0){let R=$.map(v=>`  \u2022 \`${v.match}\` (${Math.round(v.score)}% ${v.matchType} match)`).join(`
+`)}]}}async searchBySymbol(e,t,n,s,r,o="any"){let c=e.toLowerCase(),a=x=>x.replace(this.repoPath,"").replace(/^\//,""),l=this.buildFtsQuery(e,o),p;try{p=this.exportsRepo.findFts(l,t+50)}catch{p=this.exportsRepo.findByPartialName(e,t+50)}if(p.length===0){let x=this.exportsRepo.getAllNames(5e3),I=e.trim().split(/\s+/).filter($=>$.length>0);if(I.length>1){let $=new Map;for(let H of I){let N=Ht(H,x,40,20);for(let L of N){let A=$.get(L.match);A?(A.terms.push(H),A.bestScore=Math.max(A.bestScore,L.score)):$.set(L.match,{terms:[H],bestScore:L.score})}}let j=Array.from($.entries()).sort((H,N)=>N[1].terms.length!==H[1].terms.length?N[1].terms.length-H[1].terms.length:N[1].bestScore-H[1].bestScore).slice(0,10);if(j.length>0){let H=j.map(([N,L])=>{let A=L.terms.join(", ");return`  \u2022 \`${N}\` (matches: ${A}, ${Math.round(L.bestScore)}%)`}).join(`
+`);return{content:[{type:"text",text:`No symbols found matching all terms: "${e}"
+
+**Partial matches:**
+${H}
+
+\u{1F4A1} Try searching for individual terms, or use shadow_search_concept for semantic search.`}]}}}else{let $=Ht(e,x,50,5);if($.length>0){let j=$.map(H=>`  \u2022 \`${H.match}\` (${Math.round(H.score)}% ${H.matchType} match)`).join(`
 `);return{content:[{type:"text",text:`No symbols found matching: "${e}"
 
 **Did you mean?**
-${R}
+${j}
 
-\u{1F4A1} Try shadow_search_symbol with fuzzy, or shadow_search_concept for semantic search.`}]}}return{content:[{type:"text",text:`No symbols found matching: "${e}"
+\u{1F4A1} Try shadow_search_symbol with fuzzy, or shadow_search_concept for semantic search.`}]}}}return{content:[{type:"text",text:`No symbols found matching: "${e}"
 
-\u{1F4A1} Try shadow_search_symbol (fuzzy) or shadow_search_concept for semantic search.`}]}}r&&(c=c.filter(x=>{let $=this.filesRepo.findByPath(x.file_path);return s.matchesFilters(x.file_path,i,$?.mtime,$?.classification)}));let a=new tt(this.repoPath),p=new de(this.repoPath),d=a.getAncestorMissionIds(),u=se(this.repoPath)||void 0,m=this.exportsRepo.getGravityMap(d,u),h=p.getSection("gravity"),b=new Map;if(h?.hotspots)for(let x of h.hotspots)b.set(`${x.filePath}::${x.symbol}`,x.gravity);let E="\u{1F525}",g="\u26A1",y="\u269B\uFE0F",S=c.map((x,$)=>{let R=m[x.id],v=b.get(`${x.file_path}::${x.name}`),P=this.filesRepo.findByPath(x.file_path),L=$e.getMultiplier(x.file_path,P?.classification),H=(oe.SCORE_BASE-$)*L;R&&(H+=R.score*oe.SCORE_BASE),v&&(H+=v*oe.SCORE_BASE*oe.GRAVITY_STRUCTURAL_WEIGHT),x.name.toLowerCase()===o&&(H+=oe.EXACT_MATCH_BONUS*L);let B=P?.mtime;if(B!=null){let W=B>1e10?B/1e3:B,D=(Date.now()/1e3-W)/ci.SECONDS_PER_DAY;D<oe.RECENT_FILE_THRESHOLD_DAYS?H+=oe.RECENT_FILE_BOOST:D<oe.OLDER_FILE_THRESHOLD_DAYS&&(H+=oe.OLDER_FILE_BOOST)}let ne=[];return R&&ne.push(...R.reasons),v&&ne.push(`Structural Hotspot (Gravity: ${v.toFixed(1)})`),{...x,activeGravity:R,structuralGravity:v,sortScore:H,reasons:ne}}).sort((x,$)=>$.sortScore-x.sortScore).slice(n,n+t),w=c.length,C=n+t<w,T=S.map((x,$)=>{let R=l(x.file_path),v=this.filesRepo.getContent(x.file_path),P="";if(v){let B=v.split(`
-`);P=B.slice(Math.max(0,x.start_line-2),Math.min(B.length,x.start_line+3)).join(`
-`).trim()}let L=[];x.activeGravity&&(x.activeGravity.reasons.some(B=>B.includes("Working Set"))?L.push(E):x.activeGravity.reasons.some(B=>B.includes("Recent Intent"))&&L.push(g)),x.structuralGravity&&L.push(y);let H=L.length>0?` ${L.join("")}`:"";return{relPath:R,name:x.name,kind:x.kind,signature:x.signature,line:x.start_line,snippet:P,badgeStr:H,gravityReasons:x.reasons}});return{content:[{type:"text",text:`# Symbol Search Results: "${e}"
+\u{1F4A1} Try shadow_search_symbol (fuzzy) or shadow_search_concept for semantic search.`}]}}r&&(p=p.filter(x=>{let I=this.filesRepo.findByPath(x.file_path);return i.matchesFilters(x.file_path,s,I?.mtime,I?.classification)}));let d=new nt(this.repoPath),u=new ue(this.repoPath),m=d.getAncestorMissionIds(),f=re(this.repoPath)||void 0,h=this.exportsRepo.getGravityMap(m,f),b=u.getSection("gravity"),y=new Map;if(b?.hotspots)for(let x of b.hotspots)y.set(`${x.filePath}::${x.symbol}`,x.gravity);let g="\u{1F525}",S="\u26A1",R="\u269B\uFE0F",w=p.map((x,I)=>{let M=h[x.id],$=y.get(`${x.file_path}::${x.name}`),j=this.filesRepo.findByPath(x.file_path),H=be.getMultiplier(x.file_path,j?.classification),N=(ae.SCORE_BASE-I)*H;M&&(N+=M.score*ae.SCORE_BASE),$&&(N+=$*ae.SCORE_BASE*ae.GRAVITY_STRUCTURAL_WEIGHT),x.name.toLowerCase()===c&&(N+=ae.EXACT_MATCH_BONUS*H);let L=j?.mtime;if(L!=null){let D=L>1e10?L/1e3:L,te=(Date.now()/1e3-D)/ps.SECONDS_PER_DAY;te<ae.RECENT_FILE_THRESHOLD_DAYS?N+=ae.RECENT_FILE_BOOST:te<ae.OLDER_FILE_THRESHOLD_DAYS&&(N+=ae.OLDER_FILE_BOOST)}let A=[];return M&&A.push(...M.reasons),$&&A.push(`Structural Hotspot (Gravity: ${$.toFixed(1)})`),{...x,activeGravity:M,structuralGravity:$,sortScore:N,reasons:A}}).sort((x,I)=>I.sortScore-x.sortScore).slice(n,n+t),T=p.length,v=n+t<T,k=w.map((x,I)=>{let M=a(x.file_path),$=this.filesRepo.getContent(x.file_path),j="";if($){let L=$.split(`
+`);j=L.slice(Math.max(0,x.start_line-2),Math.min(L.length,x.start_line+3)).join(`
+`).trim()}let H=[];x.activeGravity&&(x.activeGravity.reasons.some(L=>L.includes("Working Set"))?H.push(g):x.activeGravity.reasons.some(L=>L.includes("Recent Intent"))&&H.push(S)),x.structuralGravity&&H.push(R);let N=H.length>0?` ${H.join("")}`:"";return{relPath:M,name:x.name,kind:x.kind,signature:x.signature,line:x.start_line,snippet:j,badgeStr:N,gravityReasons:x.reasons}});return{content:[{type:"text",text:`# Symbol Search Results: "${e}"
 
-Showing ${T.length} matching symbol(s)${C?` (use offset=${n+t} for more)`:""}:
+Showing ${k.length} matching symbol(s)${v?` (use offset=${n+t} for more)`:""}:
 
-`+T.map((x,$)=>{let R=`## ${n+$+1}. \`${x.name}\` (${x.kind})${x.badgeStr}
+`+k.map((x,I)=>{let M=`## ${n+I+1}. \`${x.name}\` (${x.kind})${x.badgeStr}
 **File**: \`${x.relPath}:${x.line}\`
-`;return x.gravityReasons&&(R+=`> *${x.gravityReasons.join(", ")}*
-`),x.signature&&(R+=`**Signature**: \`${x.signature}\`
-`),x.snippet&&(R+=`
+`;return x.gravityReasons&&(M+=`> *${x.gravityReasons.join(", ")}*
+`),x.signature&&(M+=`**Signature**: \`${x.signature}\`
+`),x.snippet&&(M+=`
 \`\`\`typescript
 ${x.snippet}
 \`\`\`
-`),R}).join(`
-`)}]}}async findConceptMatches(e,t,n,i,r,o=0){let l=se(this.repoPath)||void 0;if(!t)return[];let c=this.filesRepo.findWithEmbeddings(),p=new Ln(this.repoPath).getScorer(),u=new tt(this.repoPath).getAncestorMissionIds(),m=[];for(let h of c)try{let b=JSON.parse(h.embedding),E=ri(t,b),g=this.filesRepo.getContent(h.path),y=oe.ENABLE_LEXICAL_SCORING&&g?Ft.calculateLexicalScore(g,e):0,S=y>0?.1:.18;if(E>S){if(i&&!s.matchesFilters(h.path,n,h.mtime,h.classification))continue;let w=h.mtime>2e9?Math.floor(h.mtime/1e3):h.mtime,C=Math.floor(Date.now()/1e3)-ci.SECONDS_PER_YEAR,T=$e.getMultiplier(h.path,h.classification),I=p.calculateScore(E,w||C);I*=T;let $=this.filesRepo.getGravityMap(u,l)[h.path],R=h.classification?$e.mapClassificationToTier(h.classification):$e.classify(h.path,{content:g??void 0}),v=`Similarity: ${(E*100).toFixed(0)}%, Tier: ${R}${T!==1?` (${T}x)`:""}`;y>0&&(I+=y*oe.LEXICAL_WEIGHT,v+=` | Lexical: +${y.toFixed(1)}`),$&&(I+=$.score,v+=` | \u{1F525} Gravity: +${$.score.toFixed(1)} (${$.reasons.join(", ")})`);let P=g?Ft.extractSnippet(g,e):void 0;m.push({path:h.path,summary:h.summary||"",score:E,decayedScore:I,rationale:v,snippet:P})}}catch{}return m.sort((h,b)=>(b.decayedScore||0)-(h.decayedScore||0)),m}};N();F();function Nn(s){let{fileType:e,layer:t,dateModifiedAfter:n,dateModifiedBefore:i,includeTests:r}=s,o={fileType:je.normalizeFileType(e),layer:t,excludeLayers:r===!1?["Virtual"]:void 0,dateModifiedAfter:n,dateModifiedBefore:i},l=!!(o.fileType?.length||o.layer!=null||o.excludeLayers&&o.excludeLayers.length>0||o.dateModifiedAfter!=null||o.dateModifiedBefore!=null);return{filters:o,hasFilters:l}}async function Jr(s){let e=vn(s.query??""),t={...s,query:e},n=mn();try{let{repoPath:i}=xe(t),{query:r,limit:o=ot.DEFAULT_LIMIT,offset:l=0,skipSync:c=!1,compact:a=!1}=t;c||await j(i);let{filters:p,hasFilters:d}=Nn(t),m=await new je(i).searchByConcept(r,o,l,p,d,a);return xc(i,r,"concept"),n(),m}catch(i){return _.error({error:i,args:s},"Concept Search failed"),n(),await rt(),{content:[{type:"text",text:`Concept Search failed: ${i instanceof Error?i.message:String(i)}`}],isError:!0}}}function xc(s,e,t){try{let n=k.getInstance(s),i=se(s);n.searchHistory.record(e,t,i)}catch(n){let i=se(s);_.error({module:"search",repoPath:s,query:e,mode:t,error:n instanceof Error?n.message:String(n),branch:i},"Failed to record search history"),rt()}}N();F();async function vi(s){let e=vn(s.query??""),t={...s,query:e},n=mn();try{let{repoPath:i}=xe(t),{query:r,limit:o=ot.DEFAULT_LIMIT,offset:l=0,skipSync:c=!1}=t;c||await j(i);let{filters:a,hasFilters:p}=Nn(t),u=await new je(i).searchBySymbol(r,o,l,a,p);return Rc(i,r,"symbol"),n(),u}catch(i){return _.error({error:i,args:s},"Symbol Search failed"),n(),await rt(),{content:[{type:"text",text:`Symbol Search failed: ${i instanceof Error?i.message:String(i)}`}],isError:!0}}}function Rc(s,e,t){try{let n=k.getInstance(s),i=se(s);n.searchHistory.record(e,t,i)}catch(n){let i=se(s);_.error({module:"search",repoPath:s,query:e,mode:t,error:n instanceof Error?n.message:String(n),branch:i},"Failed to record search history"),rt()}}F();N();import Yr from"path";async function Vr(s){let{repoPath:e,query:t,key:n="",kind:i,limit:r=50}=s,o=n||t;if(!o&&!i)return{content:[{type:"text",text:'Error: Either "key" or "kind" parameter is required.'}]};await j(e);let{configs:l}=k.getInstance(e);if(o){_.info({repoPath:e,key:o},"Searching for config key in DB...");let d=l.findByKey(o,r);if(d.length===0)return{content:[{type:"text",text:`No configuration found for key: ${o}`}]};let u=d.map(h=>({file:Yr.relative(e,h.file_path),key:h.key,value:h.value,kind:h.kind}));return{content:[{type:"text",text:`# Configuration Search: "${o}"
+`),M}).join(`
+`)}]}}async findConceptMatches(e,t,n,s,r,o=0){let c=re(this.repoPath)||void 0;if(!t)return[];let a=this.filesRepo.findWithEmbeddings(),p=new Nn(this.repoPath).getScorer(),u=new nt(this.repoPath).getAncestorMissionIds(),m=[];for(let h of a)try{let b=JSON.parse(h.embedding),y=as(t,b),g=this.filesRepo.getContent(h.path),S=ae.ENABLE_LEXICAL_SCORING&&g?Ft.calculateLexicalScore(g,e):0,R=S>0?.1:.18;if(y>R){if(s&&!i.matchesFilters(h.path,n,h.mtime,h.classification))continue;let w=h.mtime>2e9?Math.floor(h.mtime/1e3):h.mtime,T=Math.floor(Date.now()/1e3)-ps.SECONDS_PER_YEAR,v=be.getMultiplier(h.path,h.classification),k=p.calculateScore(y,w||T);k*=v;let x=this.filesRepo.getGravityMap(u,c)[h.path],I=h.classification?be.mapClassificationToTier(h.classification):be.classify(h.path,{content:g??void 0}),M=`Similarity: ${(y*100).toFixed(0)}%, Tier: ${I}${v!==1?` (${v}x)`:""}`;S>0&&(k+=S*ae.LEXICAL_WEIGHT,M+=` | Lexical: +${S.toFixed(1)}`),x&&(k+=x.score,M+=` | \u{1F525} Gravity: +${x.score.toFixed(1)} (${x.reasons.join(", ")})`);let $=g?Ft.extractSnippet(g,e):void 0;m.push({path:h.path,summary:h.summary||"",score:y,decayedScore:k,rationale:M,snippet:$})}}catch{}let f=new Map;for(let h of m){let b=h.path.split("/").pop()?.split(".")[0].replace(/(Controller|Service|Repository|Component|View|Page|Handler|Wrapper|Client|DTO|Interface)$/i,"").toLowerCase();b&&b.length>3&&(f.has(b)||f.set(b,[]),f.get(b).push(h))}for(let[h,b]of f.entries())if(new Set(b.map(g=>g.path.split(".").pop())).size>1)for(let g of b)g.decayedScore=(g.decayedScore||0)+.15,g.rationale+=` | \u{1F310} Polyglot Flow: +0.15 (Linked via '${h}')`;return m.sort((h,b)=>(b.decayedScore||0)-(h.decayedScore||0)),m}buildFtsQuery(e,t){let n=e.trim();if(!n.includes(" "))return`"${n}" OR ${n}*`;let s=n.split(/\s+/).filter(r=>r.length>0);switch(t){case"exact":return`"${n}"`;case"all":return s.map(r=>`${r}*`).join(" ");default:return s.map(r=>`${r}*`).join(" OR ")}}};P();U();function An(i){let{fileType:e,layer:t}=i,n={fileType:Be.normalizeFileType(e),layer:t},s=!!(n.fileType?.length||n.layer!=null);return{filters:n,hasFilters:s}}async function Kr(i){let e=In(i.query??""),t={...i,query:e},n=fn();try{let{repoPath:s}=Re(t),{query:r,limit:o=at.DEFAULT_LIMIT,offset:c=0,compact:a=!1}=t;await z(s);let{filters:l,hasFilters:p}=An(t),u=await new Be(s).searchByConcept(r,o,c,l,p,a);return Cc(s,r,"concept"),n(),u}catch(s){return _.error({error:s,args:i},"Concept Search failed"),n(),await ot(),{content:[{type:"text",text:`Concept Search failed: ${s instanceof Error?s.message:String(s)}`}],isError:!0}}}function Cc(i,e,t){try{let n=C.getInstance(i),s=re(i);n.searchHistory.record(e,t,s)}catch(n){let s=re(i);_.error({module:"search",repoPath:i,query:e,mode:t,error:n instanceof Error?n.message:String(n),branch:s},"Failed to record search history"),ot()}}P();U();async function Is(i){let e=In(i.query??""),t={...i,query:e},n=fn();try{let{repoPath:s}=Re(t),{query:r,limit:o=at.DEFAULT_LIMIT,offset:c=0,matchMode:a="any"}=t;await z(s);let{filters:l,hasFilters:p}=An(t),u=await new Be(s).searchBySymbol(r,o,c,l,p,a);return $c(s,r,"symbol"),n(),u}catch(s){return _.error({error:s,args:i},"Symbol Search failed"),n(),await ot(),{content:[{type:"text",text:`Symbol Search failed: ${s instanceof Error?s.message:String(s)}`}],isError:!0}}}function $c(i,e,t){try{let n=C.getInstance(i),s=re(i);n.searchHistory.record(e,t,s)}catch(n){let s=re(i);_.error({module:"search",repoPath:i,query:e,mode:t,error:n instanceof Error?n.message:String(n),branch:s},"Failed to record search history"),ot()}}U();P();import Wt from"path";function Xr(i,e){let t=i.findContentByToken(e,100);return{count:t.length,files:t}}async function Zr(i){let{repoPath:e,query:t,key:n="",kind:s,limit:r=50,showUsage:o=!1}=i,c=n||t;if(!c&&!s)return{content:[{type:"text",text:'Error: Either "key" or "kind" parameter is required.'}]};await z(e);let a=C.getInstance(e),{configs:l,files:p}=a;if(c){_.info({repoPath:e,key:c},"Searching for config key in DB...");let f=l.findByKey(c,r);if(f.length===0)return{content:[{type:"text",text:`No configuration found for key: ${c}`}]};if(o){let y=f.map(w=>{let T=Xr(p,w.key),v=T.count===0?"\u26A0\uFE0F ORPHANED":`\u2713 ${T.count} usage(s)`;return{file:Wt.relative(e,w.file_path),key:w.key,value:w.value,kind:w.kind,usageCount:T.count,usageFiles:T.files.slice(0,5).map(k=>Wt.relative(e,k)),status:v}});y.sort((w,T)=>w.usageCount===0&&T.usageCount>0?-1:T.usageCount===0&&w.usageCount>0?1:w.usageCount-T.usageCount);let g=y.filter(w=>w.usageCount===0).length;return{content:[{type:"text",text:(g>0?`# Configuration Search: "${c}" (with Usage Analysis)
+
+\u26A0\uFE0F **${g} orphaned var(s)** (defined but never used in code)
+
+Found ${f.length} match(es):
+
+`:`# Configuration Search: "${c}" (with Usage Analysis)
+
+Found ${f.length} match(es), all in use:
+
+`)+y.map(w=>{let T=`## ${w.file} (${w.kind}) ${w.status}
+**${w.key}**: \`${w.value}\``;return w.usageCount>0&&w.usageFiles.length>0&&(T+=`
+> Used in: ${w.usageFiles.map(v=>`\`${v}\``).join(", ")}${w.usageCount>5?` (+${w.usageCount-5} more)`:""}`),T}).join(`
+
+`)}]}}let h=f.map(y=>({file:Wt.relative(e,y.file_path),key:y.key,value:y.value,kind:y.kind}));return{content:[{type:"text",text:`# Configuration Search: "${c}"
+
+Found ${f.length} match(es):
+
+`+h.map(y=>`## ${y.file} (${y.kind})
+**${y.key}**: \`${y.value}\``).join(`
+
+`)+"\n\n> \u{1F4A1} **Tip**: Use `showUsage: true` to see usage counts and identify orphaned vars."}]}}let d=l.findByKind(s||null,r);if(o){let f=d.map(g=>{let S=Xr(p,g.key);return{file:Wt.relative(e,g.file_path),key:g.key,value:g.value,kind:g.kind,usageCount:S.count,status:S.count===0?"ORPHANED":"in-use"}});f.sort((g,S)=>g.usageCount===0&&S.usageCount>0?-1:S.usageCount===0&&g.usageCount>0?1:g.usageCount-S.usageCount);let h=f.filter(g=>g.usageCount===0).length,b=f.length,y=`# Config Discovery (${s||"all"}) with Usage Analysis
+
+`;return y+=`**Summary**: ${b} config(s) found, ${h} orphaned
 
-Found ${d.length} match(es):
+`,h>0&&(y+=`## \u26A0\uFE0F Orphaned (${h})
+`,y+=f.filter(g=>g.usageCount===0).map(g=>`- \`${g.key}\` in ${g.file}`).join(`
+`),y+=`
 
-`+u.map(h=>`## ${h.file} (${h.kind})
-**${h.key}**: \`${h.value}\``).join(`
+`),y+=`## \u2713 In Use (${b-h})
+`,y+=f.filter(g=>g.usageCount>0).map(g=>`- \`${g.key}\` (${g.usageCount} usages)`).join(`
+`),d.length===r&&(y+=`
 
-`)}]}}let c=l.findByKind(i||null,r),a=c.map(d=>({...d,file:Yr.relative(e,d.file_path)})),p=JSON.stringify(a,null,2);return c.length===r&&(p=`Results limited to ${r} entries. Use the 'limit' parameter to see more.
+> Results limited to ${r} entries. Use the 'limit' parameter to see more.`),{content:[{type:"text",text:y}]}}let u=d.map(f=>({...f,file:Wt.relative(e,f.file_path)})),m=JSON.stringify(u,null,2);return d.length===r&&(m=`Results limited to ${r} entries. Use the 'limit' parameter to see more.
 
-`+p),{content:[{type:"text",text:p}]}}F();import Qr from"path";async function An(s){let{repoPath:e,filePath:t}=xe(s);if(!t)return{content:[{type:"text",text:"Error: filePath is required"}],isError:!0};let n=s.detailLevel||"signatures";await j(e);let{files:i,exports:r}=k.getInstance(e),o=i.findByPath(t),l=Qr.basename(t),c=/\.(ts|tsx|php|py|go)$/.test(l),a;c?a=await Ct(t):a={exports:r.findByFile(t),imports:[]},n==="structure"?(a.exports=a.exports.map(m=>({name:m.name,kind:m.kind,line:m.start_line,classification:m.classification})),delete a.imports):n==="signatures"&&(a.exports=a.exports.map(m=>({name:m.name,kind:m.kind,signature:m.signature,line:m.start_line,classification:m.classification,capabilities:JSON.parse(m.capabilities||"[]")})),delete a.imports);let p=Qr.relative(e,t),d=a.exports?.length||0,u="";return n==="structure"&&d>0?u=`
+`+m),m+="\n\n> \u{1F4A1} **Tip**: Use `showUsage: true` to see usage counts and identify orphaned vars.",{content:[{type:"text",text:m}]}}U();import eo from"path";async function Mn(i){let{repoPath:e,filePath:t}=Re(i);if(!t)return{content:[{type:"text",text:"Error: filePath is required"}],isError:!0};let n=i.detailLevel||"signatures";await z(e);let{files:s,exports:r}=C.getInstance(e),o=s.findByPath(t),c=eo.basename(t),a=/\.(ts|tsx|php|py|go)$/.test(c),l;a?l=await $t(t):l={exports:r.findByFile(t),imports:[]},n==="structure"?(l.exports=l.exports.map(m=>{let f={name:m.name,kind:m.kind,line:m.start_line,classification:m.classification};return m.members&&m.members.length>0?{...f,members:m.members.map(h=>({name:`${m.name}.${h.name}`,kind:h.kind,line:h.start_line}))}:f}),delete l.imports):n==="signatures"&&(l.exports=l.exports.map(m=>{let f={name:m.name,kind:m.kind,signature:m.signature,line:m.start_line,classification:m.classification,capabilities:JSON.parse(m.capabilities||"[]")};return m.members&&m.members.length>0?{...f,members:m.members.map(h=>({name:`${m.name}.${h.name}`,kind:h.kind,signature:h.signature,line:h.start_line}))}:f}),delete l.imports);let p=eo.relative(e,t),d=l.exports?.length||0,u="";return n==="structure"&&d>0?u=`
 
 \u{1F4A1} Showing ${d} symbol names. For full signatures: shadow_inspect_file({ filePath: "${p}", detailLevel: "signatures" })`:n==="signatures"&&d>0&&(u=`
 
-\u{1F4A1} Showing ${d} complete signatures. To inspect a specific symbol: shadow_inspect_symbol({ symbolName: "...", context: "full" })`),{content:[{type:"text",text:JSON.stringify({...a,fileDescription:o?.summary||"",classification:o?.classification||"Unknown"},null,2)+u}]}}F();import Kr from"path";import Tc from"fs";function vc(s,e,t){let n=s.split(`
-`),i=[],r=0;for(let d=0;d<Math.min(n.length,50);d++){let u=n[d].trim();if(u.startsWith("import ")||u.startsWith("from ")||u.startsWith("export ")&&u.includes(" from "))r=d+1;else if(u&&!u.startsWith("//")&&!u.startsWith("/*")&&!u.startsWith("*")&&u!==""&&r>0)break}r>0&&(i.push(...n.slice(0,r)),i.push(""));let o=[...t].sort((d,u)=>d.startLine-u.startLine),l=0,c=0;for(let d of o)if(d.isTarget){i.push(`// \u2501\u2501\u2501 REQUESTED: ${d.name} \u2501\u2501\u2501`);let u=n.slice(d.startLine-1,d.endLine);i.push(...u),i.push("// \u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501"),i.push(""),c++}else{let u=d.signature||wc(n,d.startLine-1,d.kind);u&&(i.push(`${u}`),i.push(`  /* implementation: ${d.lineCount} lines */`),i.push(""),l++)}let a=o[o.length-1];if(a)for(let d=a.endLine;d<n.length;d++){let u=n[d].trim();if(u==="}"||u==="};"){i.push(n[d]);break}else if(u&&!u.startsWith("//"))break}return{foldedSource:i.join(`
-`),totalOriginalLines:n.length,foldedToLines:i.length,siblingsShown:c,siblingsFolded:l}}function wc(s,e,t){let n=s[e];if(t.includes("Function")||t.includes("Method")||t.includes("Arrow")){let i="";for(let r=e;r<Math.min(e+5,s.length);r++)if(i+=s[r],i.includes("{")||i.includes("=>")){let o=i.indexOf("{");o>0&&(i=i.substring(0,o).trim());break}return i.trim()}return n}async function gt(s){let{repoPath:e,filePath:t,resolver:n}=xe(s),i=String(s.symbolName),r=s.context||"definition";if(t&&!n.isWithinRoot(t))return{content:[{type:"text",text:`Error: Access denied. Path ${t} is outside the repository root.`}],isError:!0};await j(e);let o=k.getInstance(e),l=[];if(i.includes(".")){let[T,I]=i.split(".");l=o.exports.findMemberCandidates(T,I,t)}else l=o.exports.findDefinitionCandidates(i,t);if(l.length===0){let T=o.exports.findPotentialParents(i);if(T.length>0){let R=T.map(v=>`\`${v.name}\` (in ${n.getRelative(v.file_path)})`).join(", ");return{content:[{type:"text",text:`Symbol "${i}" not found as a top-level export.
-However, it likely exists inside: ${R}.
-Try: shadow_inspect_symbol({ symbolName: "${T[0].name}", context: "full" }) to see the class body.`}]}}let x=o.exports.findFuzzyCandidates(i).map(R=>R.name),$=$n(i,x,50,3);if($.length>0){let R=$.map(v=>`  \u2022 \`${v.match}\` (${v.score}% match)`).join(`
-`);return{content:[{type:"text",text:`Error: Symbol "${i}" not found in the index.
+\u{1F4A1} Showing ${d} complete signatures. To inspect a specific symbol: shadow_inspect_symbol({ symbolName: "...", context: "full" })`),{content:[{type:"text",text:JSON.stringify({...l,fileDescription:o?.summary||"",classification:o?.classification||"Unknown"},null,2)+u}]}}U();import to from"path";import kc from"fs";function Lc(i,e,t){let n=i.split(`
+`),s=[],r=0;for(let d=0;d<Math.min(n.length,50);d++){let u=n[d].trim();if(u.startsWith("import ")||u.startsWith("from ")||u.startsWith("export ")&&u.includes(" from "))r=d+1;else if(u&&!u.startsWith("//")&&!u.startsWith("/*")&&!u.startsWith("*")&&u!==""&&r>0)break}r>0&&(s.push(...n.slice(0,r)),s.push(""));let o=[...t].sort((d,u)=>d.startLine-u.startLine),c=0,a=0;for(let d of o)if(d.isTarget){s.push(`// \u2501\u2501\u2501 REQUESTED: ${d.name} \u2501\u2501\u2501`);let u=n.slice(d.startLine-1,d.endLine);s.push(...u),s.push("// \u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501"),s.push(""),a++}else{let u=d.signature||Nc(n,d.startLine-1,d.kind);u&&(s.push(`${u}`),s.push(`  /* implementation: ${d.lineCount} lines */`),s.push(""),c++)}let l=o[o.length-1];if(l)for(let d=l.endLine;d<n.length;d++){let u=n[d].trim();if(u==="}"||u==="};"){s.push(n[d]);break}else if(u&&!u.startsWith("//"))break}return{foldedSource:s.join(`
+`),totalOriginalLines:n.length,foldedToLines:s.length,siblingsShown:a,siblingsFolded:c}}function Nc(i,e,t){let n=i[e];if(t.includes("Function")||t.includes("Method")||t.includes("Arrow")){let s="";for(let r=e;r<Math.min(e+5,i.length);r++)if(s+=i[r],s.includes("{")||s.includes("=>")){let o=s.indexOf("{");o>0&&(s=s.substring(0,o).trim());break}return s.trim()}return n}async function gt(i){let{repoPath:e,filePath:t,resolver:n}=Re(i),s=String(i.symbolName),r=i.context||"definition";if(t&&!n.isWithinRoot(t))return{content:[{type:"text",text:`Error: Access denied. Path ${t} is outside the repository root.`}],isError:!0};await z(e);let o=C.getInstance(e),c=[];if(s.includes(".")){let[T,v]=s.split(".");c=o.exports.findMemberCandidates(T,v,t)}else c=o.exports.findDefinitionCandidates(s,t);if(c.length===0){let T=o.exports.findPotentialParents(s);if(T.length>0){let x=T.map(I=>`\`${I.name}\` (in ${n.getRelative(I.file_path)})`).join(", ");return{content:[{type:"text",text:`Symbol "${s}" not found as a top-level export.
+However, it likely exists inside: ${x}.
+Try: shadow_inspect_symbol({ symbolName: "${T[0].name}", context: "full" }) to see the class body.`}]}}let k=o.exports.findFuzzyCandidates(s).map(x=>x.name),F=Ht(s,k,50,3);if(F.length>0){let x=F.map(I=>`  \u2022 \`${I.match}\` (${I.score}% match)`).join(`
+`);return{content:[{type:"text",text:`Error: Symbol "${s}" not found in the index.
 
 Suggestions:
-${R}
+${x}
 
 Next steps:
-  \u2022 Search semantically: shadow_search_concept({ query: "${i}" })
-  \u2022 Verify repository is indexed: shadow_sync_index({ repoPath: "${e}" })`}]}}return{content:[{type:"text",text:`Error: Symbol "${i}" not found in the index.
+  \u2022 Search semantically: shadow_search_concept({ query: "${s}" })
+  \u2022 Verify repository is indexed: shadow_sync_index({ repoPath: "${e}" })`}]}}return{content:[{type:"text",text:`Error: Symbol "${s}" not found in the index.
 
 Next steps:
-  \u2022 Search for it: shadow_search_concept({ query: "${i}" })
-  \u2022 Try with file path: shadow_inspect_symbol({ symbolName: "${i}", filePath: "..." })
-`}]}}let c=l[0];if(c.kind==="ExportSpecifier"||c.kind==="ExportAllDeclaration"){let T=o.imports.findImportSource(c.file_path,i);if(T&&T.resolved_path)return gt({...s,filePath:T.resolved_path})}let a=Tc.readFileSync(c.file_path,"utf8"),p=a.split(`
-`),d=c.end_line-c.start_line+1,u=150,m,h=!1,b=null;if(r==="definition"&&d>u){let I=o.exports.findSiblings(c.file_path).map(x=>({name:x.name,kind:x.kind,signature:x.signature||"",startLine:x.start_line,endLine:x.end_line,lineCount:x.end_line-x.start_line+1,isTarget:x.name===c.name&&x.start_line===c.start_line,parentName:x.parent_name}));if(I.length>1){b=vc(a,{name:c.name,startLine:c.start_line,endLine:c.end_line},I);let x=n.getRelative(c.file_path);m=b.foldedSource+`
+  \u2022 Search for it: shadow_search_concept({ query: "${s}" })
+  \u2022 Try with file path: shadow_inspect_symbol({ symbolName: "${s}", filePath: "..." })
+`}]}}let a=c[0];if(a.kind==="ExportSpecifier"||a.kind==="ExportAllDeclaration"){let T=o.imports.findImportSource(a.file_path,s);if(T&&T.resolved_path)return gt({...i,filePath:T.resolved_path})}let l=kc.readFileSync(a.file_path,"utf8"),p=l.split(`
+`),d=a.end_line-a.start_line+1,u=150,m,f=!1,h=null;if(r==="definition"&&d>u){let v=o.exports.findSiblings(a.file_path).map(k=>({name:k.name,kind:k.kind,signature:k.signature||"",startLine:k.start_line,endLine:k.end_line,lineCount:k.end_line-k.start_line+1,isTarget:k.name===a.name&&k.start_line===a.start_line,parentName:k.parent_name}));if(v.length>1){h=Lc(l,{name:a.name,startLine:a.start_line,endLine:a.end_line},v);let k=n.getRelative(a.file_path);m=h.foldedSource+`
 
 \u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501
 \u{1F4CA} Semantic Fold Applied (context: "definition")
 
-   Original file: ${b.totalOriginalLines} lines
-   Folded view: ${b.foldedToLines} lines
-Target Symbol: ${c.name}
+   Original file: ${h.totalOriginalLines} lines
+   Folded view: ${h.foldedToLines} lines
+Target Symbol: ${a.name}
 \u{1F4A1} Need more context?
-   \u2022 Full symbol + dependencies + usage: shadow_inspect_symbol({ symbolName: "${c.name}", context: "full" })
-   \u2022 ALL symbols in this file: shadow_inspect_file({ filePath: "${x}", detailLevel: "signatures" })
-\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501`,h=!0}else m=p.slice(c.start_line-1,c.start_line-1+u).join(`
+   \u2022 Full symbol + dependencies + usage: shadow_inspect_symbol({ symbolName: "${a.name}", context: "full" })
+   \u2022 ALL symbols in this file: shadow_inspect_file({ filePath: "${k}", detailLevel: "signatures" })
+\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501\u2501`,f=!0}else m=p.slice(a.start_line-1,a.start_line-1+u).join(`
 `)+`
 
-... (truncated ${d-u} lines)`,h=!0}else m=p.slice(c.start_line-1,c.end_line).join(`
-`);let E=c.parent_name?`${c.parent_name}.${c.name}`:c.name,g=o.exports.findHydratedById(c.id),y={name:E,kind:c.kind,file:n.getRelative(c.file_path),startLine:c.start_line,endLine:c.end_line,totalLines:d,...h&&{truncated:!0,previewLines:u},classification:c.classification,intelligence:g?{working_set_of:g.active_missions.map(T=>`Mission #${T.id}: ${T.name}`),total_intents:g.intent_log_count,latest_intent:g.recent_intents[0]?`${g.recent_intents[0].type}: ${g.recent_intents[0].content}`:null}:void 0,source:m};if(r==="definition")return{content:[{type:"text",text:JSON.stringify(y,null,2)}]};let S={definition:y,dependencies:o.imports.getImportsForFile(c.file_path).map(T=>({module:T.module_specifier,symbols:T.imported_symbols,relativePath:T.resolved_path?Kr.relative(e,T.resolved_path):null}))},w=[c.file_path],C=o.imports.findVerifiedDependents(w,i);return S.verifiedUsages=C.slice(0,10).map(T=>({file:Kr.relative(e,T.file_path),classification:T.classification,importedSymbols:T.imported_symbols})),{content:[{type:"text",text:JSON.stringify(S,null,2)}]}}async function Xr(s,e){let t=Ht.resolve(e.dir);await U(async()=>{le("Semantic Concept Search");let n=ue();n.start(`Analyzing intent: "${f.bold(s)}"...`);try{let i=await Jr({repoPath:t,query:s});n.stop("Analysis complete.");let r=i.content[0].text;if(r.includes("Found")){let l=r.split("## ").slice(1).map(c=>{let[a,...p]=c.split(`
+... (truncated ${d-u} lines)`,f=!0}else m=p.slice(a.start_line-1,a.end_line).join(`
+`);let b=a.parent_name?`${a.parent_name}.${a.name}`:a.name,y=o.exports.findHydratedById(a.id),g={name:b,kind:a.kind,file:n.getRelative(a.file_path),startLine:a.start_line,endLine:a.end_line,totalLines:d,...f&&{truncated:!0,previewLines:u},classification:a.classification,intelligence:y?{working_set_of:y.active_missions.map(T=>`Mission #${T.id}: ${T.name}`),total_intents:y.intent_log_count,latest_intent:y.recent_intents[0]?`${y.recent_intents[0].type}: ${y.recent_intents[0].content}`:null}:void 0,source:m};if(r==="definition")return{content:[{type:"text",text:JSON.stringify(g,null,2)}]};let S={definition:g,dependencies:o.imports.getImportsForFile(a.file_path).map(T=>({module:T.module_specifier,symbols:T.imported_symbols,relativePath:T.resolved_path?to.relative(e,T.resolved_path):null}))},R=[a.file_path],w=o.imports.findVerifiedDependents(R,s);return S.verifiedUsages=w.slice(0,10).map(T=>({file:to.relative(e,T.file_path),classification:T.classification,importedSymbols:T.imported_symbols})),{content:[{type:"text",text:JSON.stringify(S,null,2)}]}}async function no(i,e){let t=jt.resolve(e.dir);await B(async()=>{le("Semantic Concept Search");let n=de();n.start(`Analyzing intent: "${E.bold(i)}"...`);try{let s=await Kr({repoPath:t,query:i});n.stop("Analysis complete.");let r=s.content[0].text;if(r.includes("Found")){let c=r.split("## ").slice(1).map(a=>{let[l,...p]=a.split(`
 
-`),[d,u]=a.split(" ( "),m=(d??"").replace(/^\d+\.\s*/,"").trim(),h=p.find(b=>b.startsWith("**Summary**: "))?.replace("**Summary**: ","")||"";return{name:m,matchPct:u??"",summaryLine:h}});if(l.forEach(({name:c,matchPct:a,summaryLine:p})=>{te(`${f.green(c)} ${f.dim("("+(a||""))}`,p,"blue"),console.log("")}),e.interactive&&l.length>1){let c=await on("Inspect a file",l.map(a=>({value:{name:a.name},label:a.name,hint:a.summaryLine.slice(0,50)})),{limit:15});if(c){let a=c.name.startsWith(t)?c.name:Ht.join(t,c.name),p=await An({repoPath:t,filePath:a});p.content?.[0]&&(console.log(""),te(f.bold("File summary"),p.content[0].text,"cyan"))}}}else console.log(r)}catch(i){throw n.stop(`Search failed: ${i.message}`),i}finally{await G(t)}})}async function Zr(s,e){let t=Ht.resolve(e.dir);await U(async()=>{le("Symbol Search");let n=ue();n.start(`Searching symbols: "${f.bold(s)}"...`);try{let i=await vi({repoPath:t,query:s});n.stop("Search complete.");let r=i.content[0].text;try{let o=JSON.parse(r);if(Array.isArray(o)){if(console.log(""),rn(["Symbol","Kind","File","Line"],o.map(l=>[f.bold(f.green(l.name)),f.dim(l.kind??""),f.cyan(l.file??""),f.yellow(String(l.line??""))])),e.interactive&&o.length>1){let l=o.map(a=>({value:a,label:a.name,hint:`${a.file??""}:${a.line??""}`})),c=await on("Inspect symbol",l,{limit:15});if(c){let a=await gt({repoPath:t,symbolName:c.name});a.content?.[0]&&(console.log(""),te(f.bold(c.name),a.content[0].text,"cyan"))}}}else console.log(r)}catch{console.log(r)}}catch(i){throw n.stop(`Search failed: ${i.message}`),i}finally{await G(t)}})}async function eo(s,e){let t=Ht.resolve(e.dir);await U(async()=>{le("Fuzzy Symbol Search");let n=ue();n.start(`Fuzzy matching: "${f.bold(s)}"...`);try{let i=await vi({repoPath:t,query:s});n.stop("Search complete.");let r=i.content[0].text;if(r.includes("## ")){let l=r.split("## ").slice(1).map(c=>{let a=c.split(`
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-`):"- None",""];return r.errors.length>0&&(o.push(`## Errors (${r.errors.length})`),o.push(r.errors.map(l=>`- ${l}`).join(`
-`)),o.push("")),o.push("---"),o.push("**What happens now?**"),(n??!0)&&o.push("- After `git pull` or `git checkout`: Index auto-refreshes in background"),(i??!0)&&o.push("- After `git commit`: Symbol shift detection runs automatically"),{content:[{type:"text",text:o.join(`
-`)}]}}if(t==="remove"){wi.info({repoPath:e},"Uninstalling git hooks");let r=ys(e),o=["# Git Hooks Uninstallation","",`## Removed (${r.removed.length})`,r.removed.length>0?r.removed.map(l=>`- \`${l}\``).join(`
-`):"- None",""];return r.errors.length>0&&(o.push(`## Errors (${r.errors.length})`),o.push(r.errors.map(l=>`- ${l}`).join(`
+`),[d,u]=l.split(" ( "),m=(d??"").replace(/^\d+\.\s*/,"").trim(),f=p.find(h=>h.startsWith("**Summary**: "))?.replace("**Summary**: ","")||"";return{name:m,matchPct:u??"",summaryLine:f}});if(c.forEach(({name:a,matchPct:l,summaryLine:p})=>{se(`${E.green(a)} ${E.dim("("+(l||""))}`,p,"blue"),console.log("")}),e.interactive&&c.length>1){let a=await cn("Inspect a file",c.map(l=>({value:{name:l.name},label:l.name,hint:l.summaryLine.slice(0,50)})),{limit:15});if(a){let l=a.name.startsWith(t)?a.name:jt.join(t,a.name),p=await Mn({repoPath:t,filePath:l});p.content?.[0]&&(console.log(""),se(E.bold("File summary"),p.content[0].text,"cyan"))}}}else console.log(r)}catch(s){throw n.stop(`Search failed: ${s.message}`),s}finally{await q(t)}})}async function so(i,e){let t=jt.resolve(e.dir);await B(async()=>{le("Symbol Search");let n=de();n.start(`Searching symbols: "${E.bold(i)}"...`);try{let s=await Is({repoPath:t,query:i});n.stop("Search complete.");let r=s.content[0].text;try{let o=JSON.parse(r);if(Array.isArray(o)){if(console.log(""),an(["Symbol","Kind","File","Line"],o.map(c=>[E.bold(E.green(c.name)),E.dim(c.kind??""),E.cyan(c.file??""),E.yellow(String(c.line??""))])),e.interactive&&o.length>1){let c=o.map(l=>({value:l,label:l.name,hint:`${l.file??""}:${l.line??""}`})),a=await cn("Inspect symbol",c,{limit:15});if(a){let l=await gt({repoPath:t,symbolName:a.name});l.content?.[0]&&(console.log(""),se(E.bold(a.name),l.content[0].text,"cyan"))}}}else console.log(r)}catch{console.log(r)}}catch(s){throw n.stop(`Search failed: ${s.message}`),s}finally{await q(t)}})}async function io(i,e){let t=jt.resolve(e.dir);await B(async()=>{le("Fuzzy Symbol Search");let n=de();n.start(`Fuzzy matching: "${E.bold(i)}"...`);try{let s=await Is({repoPath:t,query:i});n.stop("Search complete.");let r=s.content[0].text;if(r.includes("## ")){let c=r.split("## ").slice(1).map(a=>{let l=a.split(`
+`),p=l[0],d=l.find(y=>y.startsWith("**Match**:"))||"",u=l.find(y=>y.startsWith("**File**:"))||"",m=p.match(/`([^`]+)`/),f=m?m[1]:"",h=d.match(/\*\*Match\*\*: (.+) \((\d+)% confidence\)/),b=u.match(/`([^:]+):(\d+)`/);return{symbolName:f,file:b?b[1]:"",line:b?b[2]:"",matchType:h?h[1]:"",confidence:h?h[2]:""}});if(console.log(""),console.log(E.dim(`Found ${c.length} fuzzy match(es):`)),console.log(""),c.forEach((a,l)=>{console.log(`${E.dim(`${l+1}.`)} ${E.bold(E.green(a.symbolName))} ${E.dim(`(${a.matchType}, ${a.confidence}% match)`)}`),console.log(`   ${E.cyan(a.file)}:${E.yellow(a.line)}`),console.log("")}),e.interactive&&c.length>1){let a=await cn("Inspect symbol",c.map(l=>({value:l,label:l.symbolName,hint:`${l.file}:${l.line}`})),{limit:15});if(a){let l=await gt({repoPath:t,symbolName:a.symbolName});l.content?.[0]&&(console.log(""),se(E.bold(a.symbolName),l.content[0].text,"cyan"))}}}else console.log(r)}catch(s){throw n.stop(`Search failed: ${s.message}`),s}finally{await q(t)}})}async function ro(i,e){let t=jt.resolve(e.dir);await B(async()=>{le("Config Search");let n=de();n.start(`Searching config: ${E.bold(i||"all")}...`);try{let s=await Zr({repoPath:t,key:i,kind:e.kind});n.stop("Search complete."),se("\u2699\uFE0F Results",s.content[0].text,"yellow")}finally{await q(t)}})}P();var Cs=_.child({module:"mcp:tools:env:hooks"});async function Pn(i){let{repoPath:e,action:t,enableAutoRefresh:n,enableSymbolHealing:s}=i;if(t==="install"){Cs.info({repoPath:e,enableAutoRefresh:n,enableSymbolHealing:s},"Installing git hooks");let r=Si({repoPath:e,enableAutoRefresh:n??!0,enableSymbolHealing:s??!0}),o=["# Git Hooks Installation","",`## Installed (${r.installed.length})`,r.installed.length>0?r.installed.map(c=>`- \`${c}\``).join(`
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+`):"- None",""];return r.errors.length>0&&(o.push(`## Errors (${r.errors.length})`),o.push(r.errors.map(c=>`- ${c}`).join(`
+`)),o.push("")),o.push("---"),o.push("**What happens now?**"),(n??!0)&&o.push("- After `git pull` or `git checkout`: Index auto-refreshes in background"),(s??!0)&&o.push("- After `git commit`: Symbol shift detection runs automatically"),{content:[{type:"text",text:o.join(`
+`)}]}}if(t==="remove"){Cs.info({repoPath:e},"Uninstalling git hooks");let r=_i(e),o=["# Git Hooks Uninstallation","",`## Removed (${r.removed.length})`,r.removed.length>0?r.removed.map(c=>`- \`${c}\``).join(`
+`):"- None",""];return r.errors.length>0&&(o.push(`## Errors (${r.errors.length})`),o.push(r.errors.map(c=>`- ${c}`).join(`
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-`)}]}}if(t==="status"){wi.info({repoPath:e},"Checking git hooks status");let r=un(e);return{content:[{type:"text",text:["# Git Hooks Status","",`## Installed (${r.installed.length})`,r.installed.length>0?r.installed.map(l=>`- \`${l}\``).join(`
-`):"- None","",`## Not Installed (${r.notInstalled.length})`,r.notInstalled.length>0?r.notInstalled.map(l=>`- \`${l}\``).join(`
+`)}]}}if(t==="status"){Cs.info({repoPath:e},"Checking git hooks status");let r=mn(e);return{content:[{type:"text",text:["# Git Hooks Status","",`## Installed (${r.installed.length})`,r.installed.length>0?r.installed.map(c=>`- \`${c}\``).join(`
+`):"- None","",`## Not Installed (${r.notInstalled.length})`,r.notInstalled.length>0?r.notInstalled.map(c=>`- \`${c}\``).join(`
 `):"- None","","---",'**To install hooks**: Use `shadow_env_hooks({ action: "install" })`'].join(`
-`)}]}}return{content:[{type:"text",text:`Unknown action: ${t}`}],isError:!0}}async function no(s){let[e,t="."]=s;if(!e||!["install","uninstall","status"].includes(e)){console.log(""),console.log(`  ${f.bold("Usage: ")} liquid-shadow hooks <install|uninstall|status> [path]`),console.log(""),console.log(`  ${f.bold("Commands: ")}`),console.log(`    ${f.cyan("install")}    Install git hooks for automatic index refresh and symbol healing`),console.log(`    ${f.cyan("uninstall")}  Remove installed git hooks`),console.log(`    ${f.cyan("status")}     Check git hooks installation status`),console.log(""),console.log(`  ${f.bold("Examples: ")}`),console.log("    liquid-shadow hooks install ."),console.log("    liquid-shadow hooks status /path/to/repo"),console.log("");return}await U(async()=>{let n=Wo("path").resolve(t);switch(e){case"install":{let i=await Mn({repoPath:n,action:"install",enableAutoRefresh:!0,enableSymbolHealing:!0});if(console.log(""),console.log(`  ${f.green("\u2714")} ${f.bold("Git hooks installed successfully")}`),console.log(""),i.content&&i.content[0])try{let r=JSON.parse(i.content[0].text);console.log(`  ${f.bold("Installed hooks: ")}`),r.hooks.forEach(o=>{console.log(`    ${f.cyan("\u2022")} ${o}`)}),console.log("")}catch{console.log(i.content[0].text)}break}case"uninstall":{await Mn({repoPath:n,action:"remove"}),console.log(""),console.log(`  ${f.green("\u2714")} ${f.bold("Git hooks uninstalled successfully")}`),console.log("");break}case"status":{let i=await Mn({repoPath:n,action:"status"});if(console.log(""),console.log(`  ${f.bold("Git Hooks Status")}`),console.log(""),i.content&&i.content[0])try{let r=JSON.parse(i.content[0].text);r.installed&&r.installed.length>0?(console.log(`  ${f.green("\u2714")} Installed hooks:`),r.installed.forEach(o=>{console.log(`    ${f.cyan("\u2022")} ${o}`)})):console.log(`  ${f.yellow("\u26A0")} No hooks installed`),r.missing&&r.missing.length>0&&(console.log(""),console.log(`  ${f.dim("Missing hooks: ")}`),r.missing.forEach(o=>{console.log(`    ${f.dim("\u2022")} ${o}`)}))}catch{console.log(i.content[0].text)}console.log("");break}}})}F();N();import Ic from"path";import kc from"fs";var io=_.child({module:"mcp:tools:workspace:list"});async function so(s){let{repoPaths:e,status:t}=s;io.info({repoCount:e.length,status:t},"Getting workspace missions");let n=[];for(let i of e)if(kc.existsSync(i))try{let{missions:r}=k.getInstance(i),o=r.findAll(t);for(let l of o){let c=r.getLinks(l.id);n.push({...l,repo_path:i,repo_name:Ic.basename(i),cross_repo_links:c})}}catch(r){io.error({error:r,repoPath:i},"Failed to query repo missions")}return n.sort((i,r)=>{let o=a=>a==="in-progress"?0:a==="verifying"?1:2,l=o(i.status),c=o(r.status);return l!==c?l-c:(i.created_at||0)-(r.created_at||0)}),{content:[{type:"text",text:JSON.stringify({total_missions:n.length,missions:n},null,2)}]}}F();N();var Cc=_.child({module:"mcp:tools:workspace:link"});async function ro(s){let{parentRepoPath:e,parentMissionId:t,childRepoPath:n,childMissionId:i,relationship:r="related"}=s;Cc.info({parentRepoPath:e,childRepoPath:n},"Linking cross-repo missions");let{missions:o}=k.getInstance(e),{missions:l}=k.getInstance(n);try{let c=o.findById(t),a=l.findById(i);if(!c)throw new Error(`Parent mission ${t} not found`);if(!a)throw new Error(`Child mission ${i} not found`);return o.createLink(t,n,i,r,"parent"),l.createLink(i,e,t,r,"child"),{content:[{type:"text",text:JSON.stringify({status:"linked",relationship:r},null,2)}]}}catch(c){throw new Error(`Failed to link: ${c.message}`)}}N();import Hc from"path";N();Ve();import Lc from"better-sqlite3";import yt from"path";import oo from"fs";import $c from"os";import Nc from"crypto";var Ac=_.child({module:"fusion-connection"}),Pn=5,Mc=1,ao=["files","exports","imports","configs","schema_migrations"],Dn=class{fusionDb;attachedRepos=new Map;fusionDbPath;name;constructor(e){this.name=e.name,this.fusionDbPath=this.getFusionDbPath(e.name),Ac.info({name:e.name,path:this.fusionDbPath},"Initializing fused index connection");let t=yt.dirname(this.fusionDbPath);oo.existsSync(t)||oo.mkdirSync(t,{recursive:!0}),this.fusionDb=new Lc(this.fusionDbPath),this.fusionDb.pragma("journal_mode = WAL"),this.fusionDb.pragma("busy_timeout = 5000"),this.initFusionSchema();for(let n of e.repoPaths)this.attachRepo(n)}getFusionDbPath(e){let t=$c.homedir(),n=yt.join(t,".mcp-liquid-shadow","fused"),i=e.replace(/[^a-zA-Z0-9-_]/g,"_");return yt.join(n,`${i}.db`)}initFusionSchema(){this.fusionDb.exec(`
+`)}]}}return{content:[{type:"text",text:`Unknown action: ${t}`}],isError:!0}}async function oo(i){let[e,t="."]=i;if(!e||!["install","uninstall","status"].includes(e)){console.log(""),console.log(`  ${E.bold("Usage: ")} liquid-shadow hooks <install|uninstall|status> [path]`),console.log(""),console.log(`  ${E.bold("Commands: ")}`),console.log(`    ${E.cyan("install")}    Install git hooks for automatic index refresh and symbol healing`),console.log(`    ${E.cyan("uninstall")}  Remove installed git hooks`),console.log(`    ${E.cyan("status")}     Check git hooks installation status`),console.log(""),console.log(`  ${E.bold("Examples: ")}`),console.log("    liquid-shadow hooks install ."),console.log("    liquid-shadow hooks status /path/to/repo"),console.log("");return}await B(async()=>{let n=Go("path").resolve(t);switch(e){case"install":{let s=await Pn({repoPath:n,action:"install",enableAutoRefresh:!0,enableSymbolHealing:!0});if(console.log(""),console.log(`  ${E.green("\u2714")} ${E.bold("Git hooks installed successfully")}`),console.log(""),s.content&&s.content[0])try{let r=JSON.parse(s.content[0].text);console.log(`  ${E.bold("Installed hooks: ")}`),r.hooks.forEach(o=>{console.log(`    ${E.cyan("\u2022")} ${o}`)}),console.log("")}catch{console.log(s.content[0].text)}break}case"uninstall":{await Pn({repoPath:n,action:"remove"}),console.log(""),console.log(`  ${E.green("\u2714")} ${E.bold("Git hooks uninstalled successfully")}`),console.log("");break}case"status":{let s=await Pn({repoPath:n,action:"status"});if(console.log(""),console.log(`  ${E.bold("Git Hooks Status")}`),console.log(""),s.content&&s.content[0])try{let r=JSON.parse(s.content[0].text);r.installed&&r.installed.length>0?(console.log(`  ${E.green("\u2714")} Installed hooks:`),r.installed.forEach(o=>{console.log(`    ${E.cyan("\u2022")} ${o}`)})):console.log(`  ${E.yellow("\u26A0")} No hooks installed`),r.missing&&r.missing.length>0&&(console.log(""),console.log(`  ${E.dim("Missing hooks: ")}`),r.missing.forEach(o=>{console.log(`    ${E.dim("\u2022")} ${o}`)}))}catch{console.log(s.content[0].text)}console.log("");break}}})}U();P();import Ac from"path";import Mc from"fs";var ao=_.child({module:"mcp:tools:workspace:list"});async function co(i){let{repoPaths:e,status:t,limit:n,summarize:s=!1}=i;ao.info({repoCount:e.length,status:t,summarize:s},"Getting workspace missions");let r=[];for(let c of e)if(Mc.existsSync(c))try{let{missions:a}=C.getInstance(c),l=a.findAll(t);for(let p of l){let d=a.getLinks(p.id);r.push({...p,repo_path:c,repo_name:Ac.basename(c),cross_repo_links:d})}}catch(a){ao.error({error:a,repoPath:c},"Failed to query repo missions")}if(r.sort((c,a)=>{let l=u=>u==="in-progress"?0:u==="verifying"?1:2,p=l(c.status),d=l(a.status);return p!==d?p-d:(c.created_at||0)-(a.created_at||0)}),s||r.length>50&&!n){let c=n||20,a=r.slice(0,c),l=r.reduce((d,u)=>(d[u.status]=(d[u.status]||0)+1,d),{}),p=r.reduce((d,u)=>(d[u.repo_name]=(d[u.repo_name]||0)+1,d),{});return{content:[{type:"text",text:JSON.stringify({summary:{total_missions:r.length,by_status:l,by_repo:p,showing_top:c},top_missions:a,hint:`Showing top ${c} of ${r.length} missions. Use limit to adjust or summarize:false for full list.`},null,2)}]}}let o=n?r.slice(0,n):r;return{content:[{type:"text",text:JSON.stringify({total_missions:r.length,showing:o.length,missions:o},null,2)}]}}U();P();var Pc=_.child({module:"mcp:tools:workspace:link"});async function lo(i){let{parentRepoPath:e,parentMissionId:t,childRepoPath:n,childMissionId:s,relationship:r="related"}=i;Pc.info({parentRepoPath:e,childRepoPath:n},"Linking cross-repo missions");let{missions:o}=C.getInstance(e),{missions:c}=C.getInstance(n);try{let a=o.findById(t),l=c.findById(s);if(!a)throw new Error(`Parent mission ${t} not found`);if(!l)throw new Error(`Child mission ${s} not found`);return o.createLink(t,n,s,r,"parent"),c.createLink(s,e,t,r,"child"),{content:[{type:"text",text:JSON.stringify({status:"linked",relationship:r},null,2)}]}}catch(a){throw new Error(`Failed to link: ${a.message}`)}}P();import Gc from"path";P();Qe();import Dc from"better-sqlite3";import yt from"path";import po from"fs";import Oc from"os";import Fc from"crypto";var Hc=_.child({module:"fusion-connection"}),Dn=5,Wc=1,uo=["files","exports","imports","configs","schema_migrations"],On=class{fusionDb;attachedRepos=new Map;fusionDbPath;name;constructor(e){this.name=e.name,this.fusionDbPath=this.getFusionDbPath(e.name),Hc.info({name:e.name,path:this.fusionDbPath},"Initializing fused index connection");let t=yt.dirname(this.fusionDbPath);po.existsSync(t)||po.mkdirSync(t,{recursive:!0}),this.fusionDb=new Dc(this.fusionDbPath),this.fusionDb.pragma("journal_mode = WAL"),this.fusionDb.pragma("busy_timeout = 5000"),this.initFusionSchema();for(let n of e.repoPaths)this.attachRepo(n)}getFusionDbPath(e){let t=Oc.homedir(),n=yt.join(t,".mcp-liquid-shadow","fused"),s=e.replace(/[^a-zA-Z0-9-_]/g,"_");return yt.join(n,`${s}.db`)}initFusionSchema(){this.fusionDb.exec(`
       CREATE TABLE IF NOT EXISTS fused_repos (
         alias TEXT PRIMARY KEY,
         repo_path TEXT NOT NULL UNIQUE,
@@ -708,64 +754,64 @@ Target Symbol: ${c.name}
 
       CREATE INDEX IF NOT EXISTS idx_virtual_edges_source ON virtual_edges(source_repo, source_file_path);
       CREATE INDEX IF NOT EXISTS idx_virtual_edges_target ON virtual_edges(target_repo, target_file_path);
-    `),this.fusionDb.prepare("INSERT OR REPLACE INTO fused_metadata (key, value, updated_at) VALUES ('schema_version', ?, unixepoch())").run(Mc.toString())}attachRepo(e){let t=yt.resolve(e);if(this.attachedRepos.has(t))return;if(!Ye(t))throw new Error(`Repository "${t}" is not indexed. Run shadow_recon_onboard({ repoPath: "${t}" }) then shadow_sync_trace({ repoPath: "${t}" }).`);let n=ke(t),i=n.name;this.validateSchemaCompatibility(n,t);let r=this.getSchemaVersion(n),o=this.generateAlias(t),l=3,c=100;for(let a=1;a<=l;a++)try{this.fusionDb.exec(`ATTACH DATABASE '${i}' AS ${o}`);let p={alias:o,repoPath:t,dbPath:i,schemaVersion:r,attached:!0};this.attachedRepos.set(t,p),this.fusionDb.prepare(`INSERT OR REPLACE INTO fused_repos (alias, repo_path, db_path, schema_version, attached_at, last_validated_at)
-             VALUES (?, ?, ?, ?, unixepoch(), unixepoch())`).run(o,t,i,r);return}catch(p){let d=p instanceof Error?p.message.toLowerCase():String(p).toLowerCase();if((d.includes("locked")||d.includes("busy"))&&a<l){this.sleep(c*a);continue}throw p}}checkHealth(){let e=[];for(let t of this.attachedRepos.values())try{this.fusionDb.prepare(`SELECT 1 FROM ${t.alias}.files LIMIT 1`).get(),e.push({alias:t.alias,repoPath:t.repoPath,accessible:!0})}catch(n){e.push({alias:t.alias,repoPath:t.repoPath,accessible:!1,error:n instanceof Error?n.message:String(n)})}return{healthy:e.every(t=>t.accessible),repos:e}}detachRepo(e){let t=yt.resolve(e),n=this.attachedRepos.get(t);n&&(this.fusionDb.exec(`DETACH DATABASE ${n.alias}`),this.attachedRepos.delete(t),this.fusionDb.prepare("DELETE FROM fused_repos WHERE repo_path = ?").run(t))}refreshRepo(e){this.detachRepo(e),this.attachRepo(e)}refreshAll(){let e=Array.from(this.attachedRepos.keys());for(let t of e)this.refreshRepo(t)}validateSchemas(){let e=Array.from(this.attachedRepos.values()).map(t=>{let n=ke(t.repoPath),i=ao.filter(o=>!this.checkTableExists(n,o)),r=this.getSchemaVersion(n);return{alias:t.alias,repoPath:t.repoPath,schemaVersion:r,compatible:r>=Pn&&i.length===0,missingTables:i}});return{valid:e.every(t=>t.compatible),minVersion:Pn,repos:e}}getAttachedRepos(){return Array.from(this.attachedRepos.values())}prepare(e){return this.fusionDb.prepare(e)}exec(e){this.fusionDb.exec(e)}close(){for(let e of this.attachedRepos.values())try{this.fusionDb.exec(`DETACH DATABASE ${e.alias}`)}catch{}this.attachedRepos.clear(),this.fusionDb.open&&this.fusionDb.close()}generateAlias(e){let t=yt.basename(e).replace(/[^a-zA-Z0-9]/g,"_").toLowerCase(),n=Nc.createHash("sha256").update(e).digest("hex").substring(0,6);return`repo_${t}_${n}`}getSchemaVersion(e){try{return e.prepare("SELECT MAX(version) as version FROM schema_migrations").get()?.version||0}catch{return 0}}validateSchemaCompatibility(e,t){let n=this.getSchemaVersion(e);if(n<Pn)throw new Error(`Schema version mismatch for ${t}. Expected >= ${Pn}, got ${n}.`);let i=ao.filter(r=>!this.checkTableExists(e,r));if(i.length>0)throw new Error(`Missing tables in ${t}: ${i.join(", ")}`)}checkTableExists(e,t){try{return!!e.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name=?").get(t)}catch{return!1}}sleep(e){let t=Date.now()+e;for(;Date.now()<t;);}get nameValue(){return this.name}get dbPath(){return this.fusionDbPath}};N();var Be=_.child({module:"edge-scanner"});function Ii(s){let e=s.split("?")[0].split("#")[0];return e.length>1&&e.endsWith("/")&&(e=e.slice(0,-1)),e}function Pc(s){if(!s)return null;try{let e=JSON.parse(s);return e.path||e.name||null}catch{return null}}function Dc(s,e){let t=Ii(s),n=Ii(e);if(t===n)return!0;let i=n.replace(/:[^/]+/g,"[^/]+").replace(/\{[^}]+\}/g,"[^/]+").replace(/\$[^/]+/g,"[^/]+");return new RegExp(`^${i}$`).test(t)}function Oc(s){Be.info("Starting HTTP gap detection scan");let e=s.getAttachedRepos();if(e.length<2)return Be.warn("Need at least 2 repos for cross-repo dependency detection"),0;let t=[];for(let r of e)try{let o=`
+    `),this.fusionDb.prepare("INSERT OR REPLACE INTO fused_metadata (key, value, updated_at) VALUES ('schema_version', ?, unixepoch())").run(Wc.toString())}attachRepo(e){let t=yt.resolve(e);if(this.attachedRepos.has(t))return;if(!Ve(t))throw new Error(`Repository "${t}" is not indexed. Run shadow_recon_onboard({ repoPath: "${t}" }) then shadow_sync_trace({ repoPath: "${t}" }).`);let n=ke(t),s=n.name;this.validateSchemaCompatibility(n,t);let r=this.getSchemaVersion(n),o=this.generateAlias(t),c=3,a=100;for(let l=1;l<=c;l++)try{this.fusionDb.exec(`ATTACH DATABASE '${s}' AS ${o}`);let p={alias:o,repoPath:t,dbPath:s,schemaVersion:r,attached:!0};this.attachedRepos.set(t,p),this.fusionDb.prepare(`INSERT OR REPLACE INTO fused_repos (alias, repo_path, db_path, schema_version, attached_at, last_validated_at)
+             VALUES (?, ?, ?, ?, unixepoch(), unixepoch())`).run(o,t,s,r);return}catch(p){let d=p instanceof Error?p.message.toLowerCase():String(p).toLowerCase();if((d.includes("locked")||d.includes("busy"))&&l<c){this.sleep(a*l);continue}throw p}}checkHealth(){let e=[];for(let t of this.attachedRepos.values())try{this.fusionDb.prepare(`SELECT 1 FROM ${t.alias}.files LIMIT 1`).get(),e.push({alias:t.alias,repoPath:t.repoPath,accessible:!0})}catch(n){e.push({alias:t.alias,repoPath:t.repoPath,accessible:!1,error:n instanceof Error?n.message:String(n)})}return{healthy:e.every(t=>t.accessible),repos:e}}detachRepo(e){let t=yt.resolve(e),n=this.attachedRepos.get(t);n&&(this.fusionDb.exec(`DETACH DATABASE ${n.alias}`),this.attachedRepos.delete(t),this.fusionDb.prepare("DELETE FROM fused_repos WHERE repo_path = ?").run(t))}refreshRepo(e){this.detachRepo(e),this.attachRepo(e)}refreshAll(){let e=Array.from(this.attachedRepos.keys());for(let t of e)this.refreshRepo(t)}validateSchemas(){let e=Array.from(this.attachedRepos.values()).map(t=>{let n=ke(t.repoPath),s=uo.filter(o=>!this.checkTableExists(n,o)),r=this.getSchemaVersion(n);return{alias:t.alias,repoPath:t.repoPath,schemaVersion:r,compatible:r>=Dn&&s.length===0,missingTables:s}});return{valid:e.every(t=>t.compatible),minVersion:Dn,repos:e}}getAttachedRepos(){return Array.from(this.attachedRepos.values())}prepare(e){return this.fusionDb.prepare(e)}exec(e){this.fusionDb.exec(e)}close(){for(let e of this.attachedRepos.values())try{this.fusionDb.exec(`DETACH DATABASE ${e.alias}`)}catch{}this.attachedRepos.clear(),this.fusionDb.open&&this.fusionDb.close()}generateAlias(e){let t=yt.basename(e).replace(/[^a-zA-Z0-9]/g,"_").toLowerCase(),n=Fc.createHash("sha256").update(e).digest("hex").substring(0,6);return`repo_${t}_${n}`}getSchemaVersion(e){try{return e.prepare("SELECT MAX(version) as version FROM schema_migrations").get()?.version||0}catch{return 0}}validateSchemaCompatibility(e,t){let n=this.getSchemaVersion(e);if(n<Dn)throw new Error(`Schema version mismatch for ${t}. Expected >= ${Dn}, got ${n}.`);let s=uo.filter(r=>!this.checkTableExists(e,r));if(s.length>0)throw new Error(`Missing tables in ${t}: ${s.join(", ")}`)}checkTableExists(e,t){try{return!!e.prepare("SELECT name FROM sqlite_master WHERE type='table' AND name=?").get(t)}catch{return!1}}sleep(e){let t=Date.now()+e;for(;Date.now()<t;);}get nameValue(){return this.name}get dbPath(){return this.fusionDbPath}};P();var ze=_.child({module:"edge-scanner"});function $s(i){let e=i.split("?")[0].split("#")[0];return e.length>1&&e.endsWith("/")&&(e=e.slice(0,-1)),e}function jc(i){if(!i)return null;try{let e=JSON.parse(i);return e.path||e.name||null}catch{return null}}function Uc(i,e){let t=$s(i),n=$s(e);if(t===n)return!0;let s=n.replace(/:[^/]+/g,"[^/]+").replace(/\{[^}]+\}/g,"[^/]+").replace(/\$[^/]+/g,"[^/]+");return new RegExp(`^${s}$`).test(t)}function Bc(i){ze.info("Starting HTTP gap detection scan");let e=i.getAttachedRepos();if(e.length<2)return ze.warn("Need at least 2 repos for cross-repo dependency detection"),0;let t=[];for(let r of e)try{let o=`
         SELECT id, name, file_path, capabilities
         FROM ${r.alias}.exports
         WHERE kind = 'HTTP Route'
-      `,l=s.executeRawQuery(o);for(let c of l){let a=Pc(c.capabilities)||c.name;a&&a.startsWith("/")&&t.push({repo:r.alias,repoPath:r.repoPath,filePath:c.file_path,symbolId:c.id,routePath:a})}}catch(o){Be.warn({repo:r.alias,error:o},"Failed to query backend routes")}Be.debug({count:t.length},"Found backend routes");let n=[];for(let r of e)try{let o=`
+      `,c=i.executeRawQuery(o);for(let a of c){let l=jc(a.capabilities)||a.name;l&&l.startsWith("/")&&t.push({repo:r.alias,repoPath:r.repoPath,filePath:a.file_path,symbolId:a.id,routePath:l})}}catch(o){ze.warn({repo:r.alias,error:o},"Failed to query backend routes")}ze.debug({count:t.length},"Found backend routes");let n=[];for(let r of e)try{let o=`
         SELECT file_path, name
         FROM ${r.alias}.event_synapses
         WHERE type = 'api_route' AND direction = 'produce'
-      `,l=s.executeRawQuery(o);for(let c of l){let a=Ii(c.name);a&&a.startsWith("/")&&n.push({repo:r.alias,repoPath:r.repoPath,filePath:c.file_path,routePath:a})}}catch(o){Be.warn({repo:r.alias,error:o},"Failed to query frontend API calls")}Be.debug({count:n.length},"Found frontend API calls");let i=0;for(let r of n)for(let o of t)if(r.repoPath!==o.repoPath&&Dc(r.routePath,o.routePath))try{s.addVirtualEdge({sourceRepo:r.repoPath,sourceFilePath:r.filePath,targetRepo:o.repoPath,targetFilePath:o.filePath,targetSymbolId:o.symbolId,relationship:"api_call",metadata:{frontendPath:r.routePath,backendPath:o.routePath,method:o.method},confidence:1}),i++}catch(l){Be.debug({source:r.filePath,target:o.filePath,error:l},"Skipped duplicate edge")}return Be.info({edgesCreated:i,backendRoutes:t.length,frontendCalls:n.length},"HTTP gap detection scan completed"),i}function co(s){let e=Oc(s);return{httpGaps:e,totalEdges:e}}N();var Fc=_.child({module:"fusion-index-service"}),On=class{constructor(e){this.connection=e}executeFederatedQuery(e,...t){return this.connection.prepare(e).all(...t).map(r=>{let{_repo_alias:o,_repo_path:l,...c}=r;return{repo:o,repoPath:l,data:c}})}executeRawQuery(e,...t){return this.connection.prepare(e).all(...t)}buildAdvancedQuery(e){let t=this.connection.getAttachedRepos();if(t.length===0)throw new Error("No repositories attached");let{table:n,tableAlias:i,columns:r,joins:o,where:l,groupBy:c,having:a,orderBy:p,limit:d,offset:u}=e,m=i||n.charAt(0),h=r.join(", "),E=t.map(g=>{let y=`${g.alias}.${n} ${m}`,S="";o&&o.length>0&&(S=o.map(I=>{let x=I.alias||I.table.charAt(0);return`${I.type} JOIN ${g.alias}.${I.table} ${x} ON ${I.on}`}).join(`
-  `));let w=l?`WHERE ${l}`:"",C=c&&c.length>0?`GROUP BY ${c.join(", ")}`:"",T=a?`HAVING ${a}`:"";return`SELECT '${g.alias}' as _repo_alias, '${g.repoPath}' as _repo_path, ${h} FROM ${y} ${S} ${w} ${C} ${T}`.trim()}).join(`
+      `,c=i.executeRawQuery(o);for(let a of c){let l=$s(a.name);l&&l.startsWith("/")&&n.push({repo:r.alias,repoPath:r.repoPath,filePath:a.file_path,routePath:l})}}catch(o){ze.warn({repo:r.alias,error:o},"Failed to query frontend API calls")}ze.debug({count:n.length},"Found frontend API calls");let s=0;for(let r of n)for(let o of t)if(r.repoPath!==o.repoPath&&Uc(r.routePath,o.routePath))try{i.addVirtualEdge({sourceRepo:r.repoPath,sourceFilePath:r.filePath,targetRepo:o.repoPath,targetFilePath:o.filePath,targetSymbolId:o.symbolId,relationship:"api_call",metadata:{frontendPath:r.routePath,backendPath:o.routePath,method:o.method},confidence:1}),s++}catch(c){ze.debug({source:r.filePath,target:o.filePath,error:c},"Skipped duplicate edge")}return ze.info({edgesCreated:s,backendRoutes:t.length,frontendCalls:n.length},"HTTP gap detection scan completed"),s}function mo(i){let e=Bc(i);return{httpGaps:e,totalEdges:e}}P();var zc=_.child({module:"fusion-index-service"}),Fn=class{constructor(e){this.connection=e}executeFederatedQuery(e,...t){return this.connection.prepare(e).all(...t).map(r=>{let{_repo_alias:o,_repo_path:c,...a}=r;return{repo:o,repoPath:c,data:a}})}executeRawQuery(e,...t){return this.connection.prepare(e).all(...t)}buildAdvancedQuery(e){let t=this.connection.getAttachedRepos();if(t.length===0)throw new Error("No repositories attached");let{table:n,tableAlias:s,columns:r,joins:o,where:c,groupBy:a,having:l,orderBy:p,limit:d,offset:u}=e,m=s||n.charAt(0),f=r.join(", "),b=t.map(y=>{let g=`${y.alias}.${n} ${m}`,S="";o&&o.length>0&&(S=o.map(v=>{let k=v.alias||v.table.charAt(0);return`${v.type} JOIN ${y.alias}.${v.table} ${k} ON ${v.on}`}).join(`
+  `));let R=c?`WHERE ${c}`:"",w=a&&a.length>0?`GROUP BY ${a.join(", ")}`:"",T=l?`HAVING ${l}`:"";return`SELECT '${y.alias}' as _repo_alias, '${y.repoPath}' as _repo_path, ${f} FROM ${g} ${S} ${R} ${w} ${T}`.trim()}).join(`
  UNION ALL 
-`);return p&&(E=`SELECT * FROM (${E}) AS federated_results ORDER BY ${p}`),d!==void 0&&(E+=` LIMIT ${d}`),u!==void 0&&(E+=` OFFSET ${u}`),E}buildFtsQuery(e,t,n,i,r=50){let o=this.connection.getAttachedRepos();if(o.length===0)throw new Error("No repositories attached");let l=n.replace(/"/g,'""'),c=i.map(p=>`c.${p}`).join(", ");return`${o.map(p=>`
-SELECT '${p.alias}' as _repo_alias, '${p.repoPath}' as _repo_path, ${c}, bm25(${p.alias}.${e}) as _fts_rank
+`);return p&&(b=`SELECT * FROM (${b}) AS federated_results ORDER BY ${p}`),d!==void 0&&(b+=` LIMIT ${d}`),u!==void 0&&(b+=` OFFSET ${u}`),b}buildFtsQuery(e,t,n,s,r=50){let o=this.connection.getAttachedRepos();if(o.length===0)throw new Error("No repositories attached");let c=n.replace(/"/g,'""'),a=s.map(p=>`c.${p}`).join(", ");return`${o.map(p=>`
+SELECT '${p.alias}' as _repo_alias, '${p.repoPath}' as _repo_path, ${a}, bm25(${p.alias}.${e}) as _fts_rank
 FROM ${p.alias}.${e} fts
 JOIN ${p.alias}.${t} c ON fts.rowid = c.id
-WHERE ${p.alias}.${e} MATCH '"${l}"'`).join(`
+WHERE ${p.alias}.${e} MATCH '"${c}"'`).join(`
  UNION ALL 
-`)} ORDER BY _fts_rank LIMIT ${r}`}buildCrossRepoImportsQuery(){let e=this.connection.getAttachedRepos();if(e.length<2)throw new Error("Cross-repo analysis requires at least 2 attached repositories");let t=[];for(let n of e)for(let i of e)n.alias!==i.alias&&t.push(`
+`)} ORDER BY _fts_rank LIMIT ${r}`}buildCrossRepoImportsQuery(){let e=this.connection.getAttachedRepos();if(e.length<2)throw new Error("Cross-repo analysis requires at least 2 attached repositories");let t=[];for(let n of e)for(let s of e)n.alias!==s.alias&&t.push(`
 SELECT
   '${n.alias}' as source_repo, '${n.repoPath}' as source_repo_path,
   i.file_path as source_file, i.module_specifier, i.imported_symbols,
-  '${i.alias}' as target_repo, '${i.repoPath}' as target_repo_path,
+  '${s.alias}' as target_repo, '${s.repoPath}' as target_repo_path,
   f.path as target_file
 FROM ${n.alias}.imports i
-JOIN ${i.alias}.files f ON i.resolved_path = f.path
+JOIN ${s.alias}.files f ON i.resolved_path = f.path
 WHERE i.resolved_path IS NOT NULL`);return t.join(`
  UNION ALL 
-`)}buildUnionQuery(e,t,n){let i=this.connection.getAttachedRepos();if(i.length===0)throw new Error("No repositories attached");let r=t.join(", "),o=n?` WHERE ${n}`:"";return i.map(l=>`SELECT '${l.alias}' as _repo_alias, '${l.repoPath}' as _repo_path, ${r} FROM ${l.alias}.${e}${o}`).join(`
+`)}buildUnionQuery(e,t,n){let s=this.connection.getAttachedRepos();if(s.length===0)throw new Error("No repositories attached");let r=t.join(", "),o=n?` WHERE ${n}`:"";return s.map(c=>`SELECT '${c.alias}' as _repo_alias, '${c.repoPath}' as _repo_path, ${r} FROM ${c.alias}.${e}${o}`).join(`
  UNION ALL 
-`)}searchExports(e,t=50){let n=this.buildUnionQuery("exports",["id","name","kind","file_path","signature"],"name LIKE ?")+` LIMIT ${t*this.connection.getAttachedRepos().length}`,i=Array(this.connection.getAttachedRepos().length).fill(`%${e}%`);return this.executeFederatedQuery(n,...i)}searchFiles(e,t=50){let n=this.buildUnionQuery("files",["path","classification","content_hash"],"path LIKE ?")+` LIMIT ${t*this.connection.getAttachedRepos().length}`,i=Array(this.connection.getAttachedRepos().length).fill(`%${e}%`);return this.executeFederatedQuery(n,...i)}getVirtualEdges(e,t){let n="SELECT * FROM virtual_edges WHERE 1=1",i=[];return e&&(n+=" AND source_repo = ?",i.push(e)),t&&(n+=" AND target_repo = ?",i.push(t)),this.connection.prepare(n).all(...i)}addVirtualEdge(e){return this.connection.prepare(`
+`)}searchExports(e,t=50){let n=this.buildUnionQuery("exports",["id","name","kind","file_path","signature"],"name LIKE ?")+` LIMIT ${t*this.connection.getAttachedRepos().length}`,s=Array(this.connection.getAttachedRepos().length).fill(`%${e}%`);return this.executeFederatedQuery(n,...s)}searchFiles(e,t=50){let n=this.buildUnionQuery("files",["path","classification","content_hash"],"path LIKE ?")+` LIMIT ${t*this.connection.getAttachedRepos().length}`,s=Array(this.connection.getAttachedRepos().length).fill(`%${e}%`);return this.executeFederatedQuery(n,...s)}getVirtualEdges(e,t){let n="SELECT * FROM virtual_edges WHERE 1=1",s=[];return e&&(n+=" AND source_repo = ?",s.push(e)),t&&(n+=" AND target_repo = ?",s.push(t)),this.connection.prepare(n).all(...s)}addVirtualEdge(e){return this.connection.prepare(`
       INSERT INTO virtual_edges
       (source_repo, source_file_path, source_symbol_id, target_repo, target_file_path, target_symbol_id, relationship, metadata, confidence, updated_at)
       VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, unixepoch())
-    `).run(e.sourceRepo,e.sourceFilePath,e.sourceSymbolId||null,e.targetRepo,e.targetFilePath,e.targetSymbolId||null,e.relationship,e.metadata?JSON.stringify(e.metadata):null,e.confidence??1).lastInsertRowid}scanEdges(){return Fc.info({name:this.connection.nameValue},"Starting edge scan"),co(this)}getAttachedRepos(){return this.connection.getAttachedRepos()}get name(){return this.connection.nameValue}};var lo=_.child({module:"fused-index"}),Ci=class{connection;service;configName;constructor(e){this.configName=e.name,this.connection=new Dn(e),this.service=new On(this.connection)}attachRepo(e){this.connection.attachRepo(e)}detachRepo(e){this.connection.detachRepo(e)}refreshRepo(e){this.connection.refreshRepo(e)}getAttachedRepos(){return this.connection.getAttachedRepos()}checkHealth(){return this.connection.checkHealth()}close(){this.connection.close(),lo.info({name:this.configName},"Fused index closed")}getStatus(){let e=this.service.executeRawQuery("SELECT COUNT(*) as count FROM virtual_edges");return{name:this.connection.nameValue,path:this.connection.dbPath,attachedRepos:this.connection.getAttachedRepos().length,repos:this.connection.getAttachedRepos(),virtualEdgesCount:e[0]?.count||0}}searchExports(e,t=50){return this.service.searchExports(e,t)}searchFiles(e,t=50){return this.service.searchFiles(e,t)}getVirtualEdges(e,t){return this.service.getVirtualEdges(e,t)}addVirtualEdge(e){return this.service.addVirtualEdge(e)}scanEdges(){return this.service.scanEdges()}buildUnionQuery(e,t,n){return this.service.buildUnionQuery(e,t,n)}executeFederatedQuery(e,...t){return this.service.executeFederatedQuery(e,...t)}executeRawQuery(e,...t){return this.service.executeRawQuery(e,...t)}buildAdvancedQuery(e){return this.service.buildAdvancedQuery(e)}buildFtsQuery(e,t,n,i,r){return this.service.buildFtsQuery(e,t,n,i,r)}buildCrossRepoImportsQuery(){return this.service.buildCrossRepoImportsQuery()}refreshAll(){this.connection.refreshAll()}validateSchemas(){return lo.debug({name:this.configName},"Delegating validateSchemas"),this.connection.validateSchemas()}},ki=new Map;function po(s){let e=ki.get(s.name);if(e){let n=new Set(e.getAttachedRepos().map(o=>o.repoPath)),i=new Set(s.repoPaths.map(o=>Hc.resolve(o)));if(n.size===i.size&&[...n].every(o=>i.has(o)))return e;e.close(),ki.delete(s.name)}let t=new Ci(s);return ki.set(s.name,t),t}N();var Wc=_.child({module:"mcp:tools:workspace:fuse"});async function uo(s){let{repoPaths:e,name:t}=s;Wc.info({repoCount:e.length,name:t},"Creating fused workspace index");try{let n=po({repoPaths:e,name:t||`workspace-${Date.now()}`});return{content:[{type:"text",text:JSON.stringify({message:"Fused index created",status:n.getStatus()},null,2)}]}}catch(n){throw new Error(`Failed to fuse: ${n.message}`)}}import Fn from"path";async function mo(s){let[e,...t]=s;if(!e||!["missions","link","fuse"].includes(e)){console.log(""),console.log(`  ${f.bold("Usage: ")} liquid-shadow workspace <missions|link> [options]`),console.log(""),console.log(`  ${f.bold("Commands: ")}`),console.log(`    ${f.cyan("missions")} <paths...>  Get unified view of missions across repositories`),console.log(`    ${f.cyan("link")} <args...>       Link missions across repositories`),console.log(`    ${f.cyan("fuse")} <paths...>       Create fused index for cross-repo search (use --name for custom name)`),console.log(""),console.log(`  ${f.bold("Examples: ")}`),console.log("    liquid-shadow workspace missions /frontend /backend"),console.log("    liquid-shadow workspace link /frontend 5 /backend 12"),console.log("    liquid-shadow workspace fuse /frontend /backend --name my-app"),console.log("");return}await U(async()=>{switch(e){case"missions":{if(t.length===0){console.error(`  ${f.red("\u2716")} Please provide at least one repository path`);return}let n=t.map(r=>Fn.resolve(r)),i=await so({repoPaths:n});if(console.log(""),console.log(`  ${f.bold("Workspace Missions")}`),console.log(""),i.content&&i.content[0]){let r=JSON.parse(i.content[0].text);r.missions&&r.missions.length>0?r.missions.forEach(o=>{console.log(`  ${f.cyan("\u2022")} ${f.bold(o.name)} (ID: ${o.id})`),console.log(`    ${f.dim("Repo: ")} ${o.repo_path}`),console.log(`    ${f.dim("Status: ")} ${o.status}`),console.log(`    ${f.dim("Branch: ")} ${o.git_branch||"N/A"}`),o.cross_repo_links&&o.cross_repo_links.length>0&&console.log(`    ${f.dim("Links: ")} ${o.cross_repo_links.length} cross-repo link(s)`),console.log("")}):(console.log(`  ${f.yellow("\u26A0")} No missions found`),console.log(""))}break}case"link":{if(t.length<4){console.error(""),console.error(`  ${f.red("\u2716")} Usage: workspace link <parent-repo> <parent-id> <child-repo> <child-id> [relationship]`),console.error("");return}let[n,i,r,o,l]=t;await ro({parentRepoPath:Fn.resolve(n),parentMissionId:parseInt(i,10),childRepoPath:Fn.resolve(r),childMissionId:parseInt(o,10),relationship:l}),console.log(""),console.log(`  ${f.green("\u2714")} ${f.bold("Missions linked successfully")}`),console.log(`    ${f.dim("Parent: ")} ${n} (Mission ${i})`),console.log(`    ${f.dim("Child: ")} ${r} (Mission ${o})`),l&&console.log(`    ${f.dim("Relationship: ")} ${l}`),console.log("");break}case"fuse":{if(t.length===0){console.error(`  ${f.red("\u2716")} Please provide at least one repository path`);return}let n,i=[];for(let o=0;o<t.length;o++)t[o]==="--name"&&o+1<t.length?(n=t[o+1],o++):i.push(Fn.resolve(t[o]));let r=await uo({repoPaths:i,name:n});if(console.log(""),console.log(`  ${f.green("\u2714")} ${f.bold("Fused Index Created")}`),r.content&&r.content[0]){let o=JSON.parse(r.content[0].text);console.log(`    ${f.dim("Name: ")} ${o.fused_index.name}`),console.log(`    ${f.dim("Path: ")} ${o.fused_index.path}`),console.log(`    ${f.dim("Repos: ")} ${o.fused_index.attachedRepos}`),console.log(""),console.log(`  ${f.bold("Instructions:")}`),console.log(`    ${o.instructions}`)}console.log("");break}}})}N();N();var Uc=_.child({module:"strategy-normalizer"}),Ne=class{static normalize(e){if(!e)return{steps:[]};let t;if(typeof e=="string")try{t=JSON.parse(e)}catch(i){return Uc.warn({strategyInput:e,err:i},"Failed to parse strategy JSON"),{steps:[]}}else t=e;return{steps:this.normalizeSteps(t)}}static normalizeSteps(e){return Array.isArray(e)?e.map((t,n)=>typeof t=="string"?{id:`step-${n}`,description:t,status:"pending"}:typeof t=="object"&&t!==null?{id:t.id||`step-${n}`,description:t.description||t.content||t.name||`Step ${n+1}`,status:t.status||"pending",dependencies:t.dependencies||t.deps,verification:t.verification,...t}:{id:`step-${n}`,description:String(t),status:"pending"}):e.steps&&Array.isArray(e.steps)?this.normalizeSteps(e.steps):typeof e=="object"?Object.entries(e).map(([t,n],i)=>typeof n=="string"?{id:t,description:n,status:"pending"}:typeof n=="object"&&n!==null?{id:t,description:n.description||n.content||n.name||t,status:n.status||"pending",dependencies:n.dependencies||n.deps,verification:n.verification,...n}:{id:t||`step-${i}`,description:String(n),status:"pending"}):[]}static stringify(e){return JSON.stringify(e,null,2)}static validate(e){let t=[];if(!e)return{valid:!0,errors:[]};try{let n=this.normalize(e),i=new Set;for(let r of n.steps)if(i.has(r.id)&&t.push(`Duplicate step ID: ${r.id}`),i.add(r.id),r.dependencies)for(let o of r.dependencies)i.has(o)||t.push(`Step "${r.id}" depends on non-existent step "${o}"`);return{valid:t.length===0,errors:t}}catch(n){return t.push(`Strategy validation failed: ${n instanceof Error?n.message:String(n)}`),{valid:!1,errors:t}}}};var jc=[{id:"step-0",description:"Analyze impact: identify dependents and call sites",status:"pending"},{id:"step-1",description:"Implement refactor and update call sites",status:"pending"},{id:"step-2",description:"Run tests and verify behavior; update docs if needed",status:"pending"}],Bc=[{id:"step-0",description:"Capture requirements and acceptance criteria",status:"pending"},{id:"step-1",description:"Implement feature with tests",status:"pending"},{id:"step-2",description:"Integrate and verify end-to-end",status:"pending"}],zc=[{id:"step-0",description:"Reproduce the bug and document steps",status:"pending"},{id:"step-1",description:"Diagnose root cause and plan fix",status:"pending"},{id:"step-2",description:"Apply fix and add/update regression test",status:"pending"},{id:"step-3",description:"Verify fix and run full test suite",status:"pending"}],Gc=[{id:"refactoring",name:"Refactoring",description:"Impact analysis \u2192 implementation \u2192 verification",defaultGoal:"Refactor {{target}} safely with full impact analysis and verification.",steps:jc},{id:"feature",name:"Feature",description:"Requirements \u2192 implementation \u2192 testing",defaultGoal:"Implement {{target}} with clear requirements and end-to-end verification.",steps:Bc},{id:"bug-fix",name:"Bug fix",description:"Reproduction \u2192 diagnosis \u2192 fix \u2192 regression test",defaultGoal:"Fix {{target}}: reproduce, diagnose, fix, and add regression test.",steps:zc}],ho=new Map(Gc.map(s=>[s.id,s]));function qc(s){return ho.get(s)}function Jc(s,e){let t=s;for(let[n,i]of Object.entries(e))t=t.replace(new RegExp(`\\{\\{${n}\\}\\}`,"g"),i);return t}function fo(s,e,t={}){let n=qc(s);if(!n)throw new Error(`Unknown template: ${s}. Use one of: ${Array.from(ho.keys()).join(", ")}`);let i=t.target||"scope",r=e||(s==="refactoring"?`Refactor ${i}`:s==="feature"?`Feature: ${i}`:`Fix: ${i}`),o=Jc(n.defaultGoal,{...t,target:i}),l=Ne.normalize({steps:n.steps}),c=Ne.stringify(l);return{name:r,goal:o,strategy:c}}F();var Hn=_.child({module:"mcp:tools:ops:plan"});async function go(s){let{repoPath:e,name:t,goal:n,strategy:i,missionId:r,parentId:o,outcomeContract:l,templateId:c,templateVars:a}=s,{missions:p}=k.getInstance(e),d=se(e),u=fe(e);Hn.info({repoPath:e,name:t,missionId:r,templateId:c},"Planning mission");try{let m=t,h=n,b=i;if(c){let S=fo(c,t,a||{});m=m??S.name,h=h??S.goal,b=b??S.strategy}if(!m||!h)throw new Error("Mission requires name and goal (or templateId with optional templateVars).");let E=null;if(b){let S=Ne.normalize(b);E=Ne.stringify(S);let w=Ne.validate(E);w.valid||Hn.warn({errors:w.errors,strategy:b},"Strategy validation warnings detected")}let g,y;r?(p.update(r,{name:m,goal:h,strategy_graph:E,commit_sha:u,parent_id:o!==void 0?o:void 0,outcome_contract:l}),g=r,y=`Mission "${m}" updated.`):(g=p.create({name:m,goal:h,strategy_graph:E,status:"planned",git_branch:d,commit_sha:u,parent_id:o||null,verification_context:null,outcome_contract:l||null}),y=`Mission "${m}" planned.`);try{await new Re(e).syncMissionToGitNotes(Number(g))}catch(S){Hn.warn({syncError:S,missionId:g},"Git Notes sync deferred")}return{content:[{type:"text",text:JSON.stringify({missionId:g,status:"planned",message:y,strategy_saved:!!b,contract_saved:!!l,from_template:c??void 0,commit:u},null,2)}]}}catch(m){throw Hn.error({error:m,repoPath:e},"Failed to plan mission"),new Error(`Failed to plan mission: ${m instanceof Error?m.message:String(m)}`)}}N();F();F();N();var Yc=_.child({module:"collision-service"}),Wn=class{repoPath;constructor(e){this.repoPath=e}async analyzePotentialCollisions(){let e=se(this.repoPath);if(!e)return[];let{missions:t,intentLogs:n}=k.getInstance(this.repoPath),i=t.findActive().filter(l=>l.git_branch&&l.git_branch!==e),r=[],o=new Set;for(let l of i){let c=l.git_branch;if(o.has(c))continue;o.add(c),Yc.info({branch:c,currentBranch:e},"Checking predictive collisions"),qs(this.repoPath,e,c)&&r.push({branch:c,type:"file",description:`Background merge-tree detected a file-level conflict between '${e}' and '${c}'.`});let p=t.findActive(e),d=new Set;for(let h of p)t.getWorkingSet(h.id).forEach(b=>d.add(b.file_path));let m=t.getWorkingSet(l.id).filter(h=>d.has(h.file_path));m.length>0&&r.push({branch:c,type:"intent",description:`Logical conflict: Mission '${l.name}' on '${c}' is modifying files you are currently working on.`,conflictingFiles:m.map(h=>h.file_path)})}return r}};var Wt=_.child({module:"mcp:tools:ops:briefing"});async function yo(s){let{repoPath:e,missionId:t,branch:n,scope:i="mission"}=s,{missions:r,intentLogs:o}=k.getInstance(e),l=fe(e),c=se(e);Wt.info({repoPath:e,missionId:t,branch:n,scope:i},"Generating briefing");try{if(i==="project"){let m=r.findActive(n),h=r.findParentOnlyIds(m),b=new Set(h),E=m.filter(R=>!b.has(R.id)),g={};for(let R of m)R.parent_id!=null&&(g[R.parent_id]||(g[R.parent_id]=[]),g[R.parent_id].push(R));let y={},S=new Map(m.map(R=>[R.id,R])),w=Object.keys(g).map(Number),C=w.filter(R=>!S.has(R)),T=C.length>0?r.findByIds(C):[],I=new Map(S);for(let R of T)I.set(R.id,R);for(let R of w){let v=I.get(R);v&&(y[R]={id:v.id,name:v.name??"",goal:v.goal??"",status:v.status??"unknown"})}let x={scope:"project",counts:r.getStats(),analytics:r.getAnalytics(),active_missions:m,parent_only_ids:h,missions_by_parent:g,parents_summary:Object.keys(y).length?y:void 0,close_parent_when_all_children_done:'When all children of a parent are completed, call shadow_ops_track({ missionId: <parent_id>, status: "completed" }) with no stepId.',next_work_candidates:E,recent_completed:r.findRecentCompleted(),recent_activity:o.findRecentDecisionActivity(),meta:{current_branch:c,current_commit:l}};if(s.includeGroupedByParent){let R=h.map(v=>{let P=m.find(H=>H.id===v),L=g[v]??[];return{parent:P,children:L}});x.missions_grouped_by_parent=R}let $=E.length===0?{tool:"shadow_ops_plan",reason:"No open work; create a mission"}:{tool:"shadow_ops_track",reason:"Pick one from next_work_candidates and run /continue"};return{content:[{type:"text",text:JSON.stringify(x,null,2)}],suggestedNext:$}}let a;if(t?a=r.findById(t):a=r.findActive(n||c||void 0)[0],!a)return{content:[{type:"text",text:"No active missions found. Ready for new assignment."}]};let p="No external shadow changes detected.";try{new mt(e).analyzeGhostChanges(a.commit_sha||void 0),p="Shadow Trace completed: Checked for external modifications."}catch(m){Wt.warn({error:m},"Ghost analysis failed")}let d={repaired:0,failed:0};try{d=new _e(e).detectAndRepairShifts()}catch(m){Wt.warn({error:m},"Symbol shift repair failed")}let u={mission:{id:a.id,name:a.name,goal:a.goal,status:a.status,last_updated:new Date(a.updated_at*1e3).toISOString(),git_branch:a.git_branch,commit_sha:a.commit_sha,outcome_contract:a.outcome_contract},artifacts:r.getArtifacts(a.id),shadow_trace:{ghost_analysis:p,symbols_repaired:d.repaired,symbols_missing:d.failed},context:{current_commit:l,working_set:r.getWorkingSet(a.id).map(m=>m.file_path)},strategy_snapshot:a.strategy_graph?JSON.parse(a.strategy_graph):null,recent_activity:o.findByMission(a.id,15),ancestor_activity:[],predictive_collisions:[]};try{let m=new Wn(e);u.predictive_collisions=await m.analyzePotentialCollisions()}catch(m){Wt.warn({error:m},"Predictive collision analysis failed")}if(s.includeLineage){let b=new tt(e).getAncestorMissionIds().filter(E=>E!==a?.id);if(b.length>0)for(let E of b){let g=o.findByMission(E,5);u.ancestor_activity.push(...g)}}return{content:[{type:"text",text:JSON.stringify(u,null,2)}]}}catch(a){throw Wt.error({error:a,repoPath:e},"Failed to generate briefing"),new Error(`Failed to generate briefing: ${a instanceof Error?a.message:String(a)}`)}}N();F();F();N();N();var Vc=_.child({module:"reasoning-engine"}),Un=class{analyze(e){Vc.debug({logCount:e.length},"Performing reasoning pass over intent logs");let t={context:[],decisions:[],consequences:[],recommendations:[],unclassified:[]};for(let n of e){let i=n.content.toLowerCase(),r=this.matchesContext(i,n.type),o=this.matchesDecision(i,n.type),l=this.matchesConsequence(i,n.type),c=this.matchesRecommendation(i,n.type);r?t.context.push(n.content):o?t.decisions.push(n.content):c?t.recommendations.push(n.content):l?t.consequences.push(n.content):n.type==="decision"?t.decisions.push(n.content):n.type==="discovery"||n.type==="fix"?t.consequences.push(n.content):t.unclassified.push(n.content)}return t}matchesContext(e,t){return["because","since","given","due to","context: ","problem: ","situation:"].some(i=>e.includes(i))||t==="blocker"}matchesDecision(e,t){return["decided","chose","implemented","integrated","using","selected","strategy:"].some(i=>e.includes(i))||t==="decision"}matchesConsequence(e,t){return["results in","enables","allows","impact: ","consequence: ","next steps: ","meaning"].some(i=>e.includes(i))||t==="fix"}matchesRecommendation(e,t){return["should","recommend","suggest","next work","future","consider","strategy advice"].some(i=>e.includes(i))}};var jn=_.child({module:"briefing-engine"}),ze=class{intentLogs;missions;reasoningEngine;persistencePivot;constructor(e){let{intentLogs:t,missions:n}=k.getInstance(e);this.intentLogs=t,this.missions=n,this.reasoningEngine=new Un,this.persistencePivot=new Re(e)}async distillMission(e,t=!0){jn.info({missionId:e},"Synthesizing mission intelligence into Tactical Briefing...");let n=this.gatherConsolidatedLogs(e);if(n.length===0)return{missionId:e,adr:"No intent logs found for this mission.",metrics:{totalLogs:0,symbolCount:0}};let i=this.reasoningEngine.analyze(n),r=new Set(n.map(l=>l.symbol_name).filter(Boolean)),o=`# Architectural Decision Record: Mission #${e}
+    `).run(e.sourceRepo,e.sourceFilePath,e.sourceSymbolId||null,e.targetRepo,e.targetFilePath,e.targetSymbolId||null,e.relationship,e.metadata?JSON.stringify(e.metadata):null,e.confidence??1).lastInsertRowid}scanEdges(){return zc.info({name:this.connection.nameValue},"Starting edge scan"),mo(this)}getAttachedRepos(){return this.connection.getAttachedRepos()}get name(){return this.connection.nameValue}};var ho=_.child({module:"fused-index"}),Ls=class{connection;service;configName;constructor(e){this.configName=e.name,this.connection=new On(e),this.service=new Fn(this.connection)}attachRepo(e){this.connection.attachRepo(e)}detachRepo(e){this.connection.detachRepo(e)}refreshRepo(e){this.connection.refreshRepo(e)}getAttachedRepos(){return this.connection.getAttachedRepos()}checkHealth(){return this.connection.checkHealth()}close(){this.connection.close(),ho.info({name:this.configName},"Fused index closed")}getStatus(){let e=this.service.executeRawQuery("SELECT COUNT(*) as count FROM virtual_edges");return{name:this.connection.nameValue,path:this.connection.dbPath,attachedRepos:this.connection.getAttachedRepos().length,repos:this.connection.getAttachedRepos(),virtualEdgesCount:e[0]?.count||0}}searchExports(e,t=50){return this.service.searchExports(e,t)}searchFiles(e,t=50){return this.service.searchFiles(e,t)}getVirtualEdges(e,t){return this.service.getVirtualEdges(e,t)}addVirtualEdge(e){return this.service.addVirtualEdge(e)}scanEdges(){return this.service.scanEdges()}buildUnionQuery(e,t,n){return this.service.buildUnionQuery(e,t,n)}executeFederatedQuery(e,...t){return this.service.executeFederatedQuery(e,...t)}executeRawQuery(e,...t){return this.service.executeRawQuery(e,...t)}buildAdvancedQuery(e){return this.service.buildAdvancedQuery(e)}buildFtsQuery(e,t,n,s,r){return this.service.buildFtsQuery(e,t,n,s,r)}buildCrossRepoImportsQuery(){return this.service.buildCrossRepoImportsQuery()}refreshAll(){this.connection.refreshAll()}validateSchemas(){return ho.debug({name:this.configName},"Delegating validateSchemas"),this.connection.validateSchemas()}},ks=new Map;function fo(i){let e=ks.get(i.name);if(e){let n=new Set(e.getAttachedRepos().map(o=>o.repoPath)),s=new Set(i.repoPaths.map(o=>Gc.resolve(o)));if(n.size===s.size&&[...n].every(o=>s.has(o)))return e;e.close(),ks.delete(i.name)}let t=new Ls(i);return ks.set(i.name,t),t}P();var qc=_.child({module:"mcp:tools:workspace:fuse"});async function go(i){let{repoPaths:e,name:t}=i;qc.info({repoCount:e.length,name:t},"Creating fused workspace index");try{let n=fo({repoPaths:e,name:t||`workspace-${Date.now()}`});return{content:[{type:"text",text:JSON.stringify({message:"Fused index created",status:n.getStatus()},null,2)}]}}catch(n){throw new Error(`Failed to fuse: ${n.message}`)}}import Hn from"path";async function yo(i){let[e,...t]=i;if(!e||!["missions","link","fuse"].includes(e)){console.log(""),console.log(`  ${E.bold("Usage: ")} liquid-shadow workspace <missions|link> [options]`),console.log(""),console.log(`  ${E.bold("Commands: ")}`),console.log(`    ${E.cyan("missions")} <paths...>  Get unified view of missions across repositories`),console.log(`    ${E.cyan("link")} <args...>       Link missions across repositories`),console.log(`    ${E.cyan("fuse")} <paths...>       Create fused index for cross-repo search (use --name for custom name)`),console.log(""),console.log(`  ${E.bold("Examples: ")}`),console.log("    liquid-shadow workspace missions /frontend /backend"),console.log("    liquid-shadow workspace link /frontend 5 /backend 12"),console.log("    liquid-shadow workspace fuse /frontend /backend --name my-app"),console.log("");return}await B(async()=>{switch(e){case"missions":{if(t.length===0){console.error(`  ${E.red("\u2716")} Please provide at least one repository path`);return}let n=t.map(r=>Hn.resolve(r)),s=await co({repoPaths:n});if(console.log(""),console.log(`  ${E.bold("Workspace Missions")}`),console.log(""),s.content&&s.content[0]){let r=JSON.parse(s.content[0].text);r.missions&&r.missions.length>0?r.missions.forEach(o=>{console.log(`  ${E.cyan("\u2022")} ${E.bold(o.name)} (ID: ${o.id})`),console.log(`    ${E.dim("Repo: ")} ${o.repo_path}`),console.log(`    ${E.dim("Status: ")} ${o.status}`),console.log(`    ${E.dim("Branch: ")} ${o.git_branch||"N/A"}`),o.cross_repo_links&&o.cross_repo_links.length>0&&console.log(`    ${E.dim("Links: ")} ${o.cross_repo_links.length} cross-repo link(s)`),console.log("")}):(console.log(`  ${E.yellow("\u26A0")} No missions found`),console.log(""))}break}case"link":{if(t.length<4){console.error(""),console.error(`  ${E.red("\u2716")} Usage: workspace link <parent-repo> <parent-id> <child-repo> <child-id> [relationship]`),console.error("");return}let[n,s,r,o,c]=t;await lo({parentRepoPath:Hn.resolve(n),parentMissionId:parseInt(s,10),childRepoPath:Hn.resolve(r),childMissionId:parseInt(o,10),relationship:c}),console.log(""),console.log(`  ${E.green("\u2714")} ${E.bold("Missions linked successfully")}`),console.log(`    ${E.dim("Parent: ")} ${n} (Mission ${s})`),console.log(`    ${E.dim("Child: ")} ${r} (Mission ${o})`),c&&console.log(`    ${E.dim("Relationship: ")} ${c}`),console.log("");break}case"fuse":{if(t.length===0){console.error(`  ${E.red("\u2716")} Please provide at least one repository path`);return}let n,s=[];for(let o=0;o<t.length;o++)t[o]==="--name"&&o+1<t.length?(n=t[o+1],o++):s.push(Hn.resolve(t[o]));let r=await go({repoPaths:s,name:n});if(console.log(""),console.log(`  ${E.green("\u2714")} ${E.bold("Fused Index Created")}`),r.content&&r.content[0]){let o=JSON.parse(r.content[0].text);console.log(`    ${E.dim("Name: ")} ${o.fused_index.name}`),console.log(`    ${E.dim("Path: ")} ${o.fused_index.path}`),console.log(`    ${E.dim("Repos: ")} ${o.fused_index.attachedRepos}`),console.log(""),console.log(`  ${E.bold("Instructions:")}`),console.log(`    ${o.instructions}`)}console.log("");break}}})}P();P();var Jc=_.child({module:"strategy-normalizer"}),Ne=class{static normalize(e){if(!e)return{steps:[]};let t;if(typeof e=="string")try{t=JSON.parse(e)}catch(s){return Jc.warn({strategyInput:e,err:s},"Failed to parse strategy JSON"),{steps:[]}}else t=e;return{steps:this.normalizeSteps(t)}}static normalizeSteps(e){return Array.isArray(e)?e.map((t,n)=>typeof t=="string"?{id:`step-${n}`,description:t,status:"pending"}:typeof t=="object"&&t!==null?{id:t.id||`step-${n}`,description:t.description||t.content||t.name||`Step ${n+1}`,status:t.status||"pending",dependencies:t.dependencies||t.deps,verification:t.verification,...t}:{id:`step-${n}`,description:String(t),status:"pending"}):e.steps&&Array.isArray(e.steps)?this.normalizeSteps(e.steps):typeof e=="object"?Object.entries(e).map(([t,n],s)=>typeof n=="string"?{id:t,description:n,status:"pending"}:typeof n=="object"&&n!==null?{id:t,description:n.description||n.content||n.name||t,status:n.status||"pending",dependencies:n.dependencies||n.deps,verification:n.verification,...n}:{id:t||`step-${s}`,description:String(n),status:"pending"}):[]}static stringify(e){return JSON.stringify(e,null,2)}static validate(e){let t=[];if(!e)return{valid:!0,errors:[]};try{let n=this.normalize(e),s=new Set;for(let r of n.steps)if(s.has(r.id)&&t.push(`Duplicate step ID: ${r.id}`),s.add(r.id),r.dependencies)for(let o of r.dependencies)s.has(o)||t.push(`Step "${r.id}" depends on non-existent step "${o}"`);return{valid:t.length===0,errors:t}}catch(n){return t.push(`Strategy validation failed: ${n instanceof Error?n.message:String(n)}`),{valid:!1,errors:t}}}};P();import Ns from"fs";import bo from"path";import Yc from"os";var Vc=[{id:"step-0",description:"Analyze impact: identify dependents and call sites",status:"pending"},{id:"step-1",description:"Implement refactor and update call sites",status:"pending"},{id:"step-2",description:"Run tests and verify behavior; update docs if needed",status:"pending"}],Qc=[{id:"step-0",description:"Capture requirements and acceptance criteria",status:"pending"},{id:"step-1",description:"Implement feature with tests",status:"pending"},{id:"step-2",description:"Integrate and verify end-to-end",status:"pending"}],Kc=[{id:"step-0",description:"Reproduce the bug and document steps",status:"pending"},{id:"step-1",description:"Diagnose root cause and plan fix",status:"pending"},{id:"step-2",description:"Apply fix and add/update regression test",status:"pending"},{id:"step-3",description:"Verify fix and run full test suite",status:"pending"}],Eo=[{id:"refactoring",name:"Refactoring",description:"Impact analysis \u2192 implementation \u2192 verification",defaultGoal:"Refactor {{target}} safely with full impact analysis and verification.",steps:Vc},{id:"feature",name:"Feature",description:"Requirements \u2192 implementation \u2192 testing",defaultGoal:"Implement {{target}} with clear requirements and end-to-end verification.",steps:Qc},{id:"bug-fix",name:"Bug fix",description:"Reproduction \u2192 diagnosis \u2192 fix \u2192 regression test",defaultGoal:"Fix {{target}}: reproduce, diagnose, fix, and add regression test.",steps:Kc}],As=new Map(Eo.map(i=>[i.id,i])),Wn=!1;function Xc(){if(Wn)return;let i=bo.join(Yc.homedir(),".shadow","templates");if(!Ns.existsSync(i)){_.debug({templatesDir:i},"Custom templates directory does not exist"),Wn=!0;return}try{let e=Ns.readdirSync(i).filter(t=>t.endsWith(".json"));for(let t of e)try{let n=bo.join(i,t),s=Ns.readFileSync(n,"utf8"),r=JSON.parse(s);if(!r.id||!r.name||!r.defaultGoal||!r.steps){_.warn({file:t,template:r},"Invalid custom template structure - skipping");continue}if(!Array.isArray(r.steps)||r.steps.length===0){_.warn({file:t},"Template has no steps - skipping");continue}if(Eo.some(o=>o.id===r.id)){_.warn({file:t,templateId:r.id},"Custom template ID conflicts with built-in - skipping");continue}As.set(r.id,r),_.info({file:t,templateId:r.id},"Loaded custom template")}catch(n){_.warn({file:t,error:n},"Failed to load custom template")}Wn=!0}catch(e){_.warn({error:e,templatesDir:i},"Failed to read custom templates directory"),Wn=!0}}function Zc(i){return Xc(),As.get(i)}function el(i,e){let t=i;for(let[n,s]of Object.entries(e))t=t.replace(new RegExp(`\\{\\{${n}\\}\\}`,"g"),s);return t}function So(i,e,t={}){let n=Zc(i);if(!n)throw new Error(`Unknown template: ${i}. Use one of: ${Array.from(As.keys()).join(", ")}`);let s=t.target||"scope",r=e||(i==="refactoring"?`Refactor ${s}`:i==="feature"?`Feature: ${s}`:`Fix: ${s}`),o=el(n.defaultGoal,{...t,target:s}),c=Ne.normalize({steps:n.steps}),a=Ne.stringify(c);return{name:r,goal:o,strategy:a}}U();var jn=_.child({module:"mcp:tools:ops:plan"});async function _o(i){let{repoPath:e,name:t,goal:n,strategy:s,missionId:r,parentId:o,outcomeContract:c,templateId:a,templateVars:l}=i,{missions:p}=C.getInstance(e),d=re(e),u=fe(e);jn.info({repoPath:e,name:t,missionId:r,templateId:a},"Planning mission");try{let m=t,f=n,h=s;if(a){let S=So(a,t,l||{});m=m??S.name,f=f??S.goal,h=h??S.strategy}if(!m||!f)throw new Error("Mission requires name and goal (or templateId with optional templateVars).");let b=null;if(h){let S=Ne.normalize(h);b=Ne.stringify(S);let R=Ne.validate(b);R.valid||jn.warn({errors:R.errors,strategy:h},"Strategy validation warnings detected")}let y,g;r?(p.update(r,{name:m,goal:f,strategy_graph:b,commit_sha:u,parent_id:o!==void 0?o:void 0,outcome_contract:c}),y=r,g=`Mission "${m}" updated.`):(y=p.create({name:m,goal:f,strategy_graph:b,status:"planned",git_branch:d,commit_sha:u,parent_id:o||null,verification_context:null,outcome_contract:c||null}),g=`Mission "${m}" planned.`);try{await new ve(e).syncMissionToGitNotes(Number(y))}catch(S){jn.warn({syncError:S,missionId:y},"Git Notes sync deferred")}return{content:[{type:"text",text:JSON.stringify({missionId:y,status:"planned",message:g,strategy_saved:!!h,contract_saved:!!c,from_template:a??void 0,commit:u},null,2)}]}}catch(m){throw jn.error({error:m,repoPath:e},"Failed to plan mission"),new Error(`Failed to plan mission: ${m instanceof Error?m.message:String(m)}`)}}P();U();U();P();var tl=_.child({module:"collision-service"}),Un=class{repoPath;constructor(e){this.repoPath=e}async analyzePotentialCollisions(){let e=re(this.repoPath);if(!e)return[];let{missions:t,intentLogs:n}=C.getInstance(this.repoPath),s=t.findActive().filter(c=>c.git_branch&&c.git_branch!==e),r=[],o=new Set;for(let c of s){let a=c.git_branch;if(o.has(a))continue;o.add(a),tl.info({branch:a,currentBranch:e},"Checking predictive collisions"),Qi(this.repoPath,e,a)&&r.push({branch:a,type:"file",description:`Background merge-tree detected a file-level conflict between '${e}' and '${a}'.`});let p=t.findActive(e),d=new Set;for(let f of p)t.getWorkingSet(f.id).forEach(h=>d.add(h.file_path));let m=t.getWorkingSet(c.id).filter(f=>d.has(f.file_path));m.length>0&&r.push({branch:a,type:"intent",description:`Logical conflict: Mission '${c.name}' on '${a}' is modifying files you are currently working on.`,conflictingFiles:m.map(f=>f.file_path)})}return r}};var Ut=_.child({module:"mcp:tools:ops:briefing"});async function xo(i){let{repoPath:e,missionId:t,scope:n="mission",activeMissionsLimit:s,recentActivityLimit:r=10,compact:o=!1}=i,{missions:c,intentLogs:a}=C.getInstance(e),l=fe(e),p=re(e);Ut.info({repoPath:e,missionId:t,scope:n},"Generating briefing");try{if(n==="project"){let h=c.findActive(p||void 0),b=h.length;s&&h.length>s&&(h=h.slice(0,s));let y=c.findParentOnlyIds(h),g=new Set(y),S=h.filter(N=>!g.has(N.id)),R={};for(let N of h)N.parent_id!=null&&(R[N.parent_id]||(R[N.parent_id]=[]),R[N.parent_id].push(N));let w={},T=new Map(h.map(N=>[N.id,N])),v=Object.keys(R).map(Number),k=v.filter(N=>!T.has(N)),F=k.length>0?c.findByIds(k):[],x=new Map(T);for(let N of F)x.set(N.id,N);for(let N of v){let L=x.get(N);L&&(w[N]={id:L.id,name:L.name??"",goal:L.goal??"",status:L.status??"unknown"})}let I=o?h.map(N=>({...N,strategy_graph:void 0})):h,M=o?S.map(N=>({...N,strategy_graph:void 0})):S,$=a.findRecentDecisionActivity(r),j={scope:"project",counts:c.getStats(),analytics:c.getAnalytics(),active_missions:I,parent_only_ids:y,missions_by_parent:o?Object.fromEntries(Object.entries(R).map(([N,L])=>[N,L.map(A=>({...A,strategy_graph:void 0}))])):R,parents_summary:Object.keys(w).length?w:void 0,close_parent_when_all_children_done:'When all children of a parent are completed, call shadow_ops_track({ missionId: <parent_id>, status: "completed" }) with no stepId.',next_work_candidates:M,recent_completed:c.findRecentCompleted(),recent_activity:$,meta:{current_branch:p,current_commit:l,activeMissionsTotal:b,activeMissionsShown:h.length,hasMoreMissions:s?b>s:!1}};if(n==="project"){let N=y.map(L=>{let A=h.find(te=>te.id===L),D=R[L]??[];return{parent:A,children:D}});j.missions_grouped_by_parent=N}let H=S.length===0?{tool:"shadow_ops_plan",reason:"No open work; create a mission"}:{tool:"shadow_ops_track",reason:"Pick one from next_work_candidates and run /continue"};return{content:[{type:"text",text:JSON.stringify(j,null,2)}],suggestedNext:H}}let d;if(t?d=c.findById(t):d=c.findActive(p||void 0)[0],!d)return{content:[{type:"text",text:"No active missions found. Ready for new assignment."}]};let u="No external shadow changes detected.";try{new mt(e).analyzeGhostChanges(d.commit_sha||void 0),u="Shadow Trace completed: Checked for external modifications."}catch(h){Ut.warn({error:h},"Ghost analysis failed")}let m={repaired:0,failed:0};try{m=new Te(e).detectAndRepairShifts()}catch(h){Ut.warn({error:h},"Symbol shift repair failed")}let f={mission:{id:d.id,name:d.name,goal:d.goal,status:d.status,last_updated:new Date(d.updated_at*1e3).toISOString(),git_branch:d.git_branch,commit_sha:d.commit_sha,outcome_contract:d.outcome_contract},artifacts:c.getArtifacts(d.id),shadow_trace:{ghost_analysis:u,symbols_repaired:m.repaired,symbols_missing:m.failed},context:{current_commit:l,working_set:c.getWorkingSet(d.id).map(h=>h.file_path)},strategy_snapshot:d.strategy_graph?JSON.parse(d.strategy_graph):null,recent_activity:a.findByMission(d.id,15),ancestor_activity:[],predictive_collisions:[]};try{let h=new Un(e);f.predictive_collisions=await h.analyzePotentialCollisions()}catch(h){Ut.warn({error:h},"Predictive collision analysis failed")}if(n==="mission"){let y=new nt(e).getAncestorMissionIds().filter(g=>g!==d?.id);if(y.length>0)for(let g of y){let S=a.findByMission(g,5);f.ancestor_activity.push(...S)}}return{content:[{type:"text",text:JSON.stringify(f,null,2)}]}}catch(d){throw Ut.error({error:d,repoPath:e},"Failed to generate briefing"),new Error(`Failed to generate briefing: ${d instanceof Error?d.message:String(d)}`)}}P();U();U();P();P();var nl=_.child({module:"reasoning-engine"}),Bn=class{analyze(e){nl.debug({logCount:e.length},"Performing reasoning pass over intent logs");let t={context:[],decisions:[],consequences:[],recommendations:[],unclassified:[]};for(let n of e){let s=n.content.toLowerCase(),r=this.matchesContext(s,n.type),o=this.matchesDecision(s,n.type),c=this.matchesConsequence(s,n.type),a=this.matchesRecommendation(s,n.type);r?t.context.push(n.content):o?t.decisions.push(n.content):a?t.recommendations.push(n.content):c?t.consequences.push(n.content):n.type==="decision"?t.decisions.push(n.content):n.type==="discovery"||n.type==="fix"?t.consequences.push(n.content):t.unclassified.push(n.content)}return t}matchesContext(e,t){return["because","since","given","due to","context: ","problem: ","situation:"].some(s=>e.includes(s))||t==="blocker"}matchesDecision(e,t){return["decided","chose","implemented","integrated","using","selected","strategy:"].some(s=>e.includes(s))||t==="decision"}matchesConsequence(e,t){return["results in","enables","allows","impact: ","consequence: ","next steps: ","meaning"].some(s=>e.includes(s))||t==="fix"}matchesRecommendation(e,t){return["should","recommend","suggest","next work","future","consider","strategy advice"].some(s=>e.includes(s))}};var zn=_.child({module:"briefing-engine"}),Ge=class{intentLogs;missions;reasoningEngine;persistencePivot;constructor(e){let{intentLogs:t,missions:n}=C.getInstance(e);this.intentLogs=t,this.missions=n,this.reasoningEngine=new Bn,this.persistencePivot=new ve(e)}async distillMission(e,t=!0){zn.info({missionId:e},"Synthesizing mission intelligence into Tactical Briefing...");let n=this.gatherConsolidatedLogs(e);if(n.length===0)return{missionId:e,adr:"No intent logs found for this mission.",metrics:{totalLogs:0,symbolCount:0}};let s=this.reasoningEngine.analyze(n),r=new Set(n.map(c=>c.symbol_name).filter(Boolean)),o=`# Architectural Decision Record: Mission #${e}
 
 `;if(o+=`## Summary of Intent
 `,o+=`Collected ${n.length} intent events across ${r.size} symbols.
 
-`,i.context.length>0&&(o+=`### Context
-`,i.context.forEach(l=>{o+=`- ${l}
+`,s.context.length>0&&(o+=`### Context
+`,s.context.forEach(c=>{o+=`- ${c}
 `}),o+=`
-`),i.decisions.length>0&&(o+=`### Key Decisions
-`,i.decisions.forEach(l=>{o+=`- ${l}
+`),s.decisions.length>0&&(o+=`### Key Decisions
+`,s.decisions.forEach(c=>{o+=`- ${c}
 `}),o+=`
-`),i.consequences.length>0&&(o+=`### Consequences & Evolutions
-`,i.consequences.forEach(l=>{o+=`- ${l}
+`),s.consequences.length>0&&(o+=`### Consequences & Evolutions
+`,s.consequences.forEach(c=>{o+=`- ${c}
 `}),o+=`
-`),i.recommendations.length>0&&(o+=`### Strategic Recommendations
-`,i.recommendations.forEach(l=>{o+=`- ${l}
+`),s.recommendations.length>0&&(o+=`### Strategic Recommendations
+`,s.recommendations.forEach(c=>{o+=`- ${c}
 `}),o+=`
-`),i.unclassified.length>0&&(o+=`### Additional Notes
-`,i.unclassified.forEach(l=>{o+=`- ${l}
+`),s.unclassified.length>0&&(o+=`### Additional Notes
+`,s.unclassified.forEach(c=>{o+=`- ${c}
 `}),o+=`
 `),o+=`
 --- 
-*Generated by Liquid Shadow Reasoning Engine v1*`,t){this.intentLogs.create({mission_id:e,type:"adr",content:o,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:null});try{await this.persistencePivot.syncMissionToGitNotes(e),jn.info({missionId:e},"Tactical Briefing synthesized, archived, and synced to Git Notes.")}catch(l){jn.error({missionId:e,error:l},"Failed to sync ADR to Git Notes")}}else jn.info({missionId:e},"Tactical Briefing synthesized (dry-run).");return{missionId:e,adr:o,metrics:{totalLogs:n.length,symbolCount:r.size}}}gatherConsolidatedLogs(e,t=0){let n=this.intentLogs.findByMission(e,500);if(t>2)return n;let i=this.missions.findByParentId(e);for(let r of i)n.push(...this.gatherConsolidatedLogs(r.id,t+1));return n.filter(r=>r.type!=="adr"&&r.type!=="system")}};N();import{Visitor as Qc}from"@swc/core/Visitor.js";import*as bo from"@swc/core";var Kc=_.child({module:"verification-engine"}),Li=class extends Qc{foundUsage=!1;foundImport=!1;rule;currentFunctionName=null;constructor(e){super(),this.rule=e}visitImportDeclaration(e){return this.rule.type==="import"&&e.source.value===this.rule.target&&(this.foundImport=!0),super.visitImportDeclaration(e)}visitFunctionDeclaration(e){let t=this.currentFunctionName;this.currentFunctionName=e.identifier.value;let n=super.visitFunctionDeclaration(e);return this.currentFunctionName=t,n}visitCallExpression(e){return this.rule.type==="usage"&&e.callee.type==="Identifier"&&e.callee.value===this.rule.target&&(!this.rule.context||this.currentFunctionName===this.rule.context)&&(this.foundUsage=!0),super.visitCallExpression(e)}},Bn=class{async verify(e,t){try{let n=await bo.parse(e,{syntax:"typescript",tsx:!0,comments:!1}),i=new Li(t);i.visitProgram(n);let r=!1,o=[];if(t.type==="import")r=i.foundImport,r||o.push(`Required import "${t.target}" not found.`);else if(t.type==="usage"){if(r=i.foundUsage,!r){let l=t.context?` in function "${t.context}"`:"";o.push(`Required usage of "${t.target}"${l} not found.`)}}else t.type==="pattern"&&(r=new RegExp(t.target).test(e),r||o.push(`Required pattern "${t.target}" not found.`));return{passed:r,errors:o}}catch(n){return Kc.error({error:n},"Verification failed due to parse error"),{passed:!1,errors:[`Parse error: ${n.message}`]}}}};import Eo from"path";import zn from"fs";var bt=_.child({module:"mcp:tools:ops:track"});async function So(s){let{repoPath:e,missionId:t,stepId:n,status:i,contextPivot:r,updates:o,artifacts:l}=s,{missions:c,intentLogs:a}=k.getInstance(e),p=fe(e);bt.info({repoPath:e,missionId:t,singleStep:n,batchCount:o?.length,artifactCount:l?.length},"Updating mission status");try{if(l&&Array.isArray(l))for(let m of l)c.addArtifact(t,m.type,m.identifier,m.metadata);let d=[];if(o&&Array.isArray(o)&&d.push(...o),n&&i&&d.push({stepId:n,status:i,contextPivot:r}),i&&!n){if(c.updateStatus(t,i,p||void 0),a.create({mission_id:t,type:"system",content:`Mission status changed to "${i}"`,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:p}),i==="completed")try{await new ze(e).distillMission(t),bt.info({missionId:t},"Auto-Synthesis completed successfully")}catch(m){bt.warn({synthesisError:m,missionId:t},"Auto-Synthesis deferred or failed")}if(!d.length)return{content:[{type:"text",text:JSON.stringify({missionId:t,status:i,message:"Mission status updated successfully.",artifacts_added:l?.length||0,commit:p},null,2)}]}}if(d.length===0&&(!l||l.length===0))throw new Error("No updates provided. Must specify either 'updates', 'stepId'/'status', 'status' (top-level), or 'artifacts'.");let u=[];for(let m of d){let{stepId:h,status:b,contextPivot:E}=m,g=c.findById(t);if(!g)throw new Error(`Mission ID ${t} not found`);let y=JSON.parse(g.strategy_graph||"{}"),S=null;if(Array.isArray(y)?S=y.find(w=>w.id===h):y.nodes&&Array.isArray(y.nodes)?S=y.nodes.find(w=>w.id===h):y.steps?Array.isArray(y.steps)?S=y.steps.find(w=>w.id===h):S=y.steps[h]:y[h]&&(S=y[h]),!S)throw new Error(`Step ID "${h}" not found`);if(b==="completed"&&S.verification){let w=new Bn,C=Array.isArray(S.verification)?S.verification:[S.verification];for(let T of C){let I=T.filePath;if(I&&!Eo.isAbsolute(I)&&(I=Eo.join(e,I)),I){if(!zn.existsSync(I))throw new Error(`Verification failed: File not found at ${I}`);let x=await w.verify(zn.readFileSync(I,"utf8"),T);if(!x.passed)throw new Error(`Verification failed: ${x.errors.join("")}`)}else{let x=c.getWorkingSet(t),$=!1;for(let R of x){if(!zn.existsSync(R.file_path))continue;if((await w.verify(zn.readFileSync(R.file_path,"utf8"),T)).passed){$=!0;break}}if(!$)throw new Error(`Verification failed for rule "${T.target}" in working set.`)}}}if(S.status=b,c.update(t,{strategy_graph:JSON.stringify(y),commit_sha:p}),a.create({mission_id:t,type:"system",content:`Step "${h}" updated to "${b}"`,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:p}),E)try{let w=JSON.parse(E);if(c.clearWorkingSet(t),w.files&&Array.isArray(w.files))for(let C of w.files)c.addToWorkingSet(t,C)}catch(w){bt.warn({error:w},"Failed to apply context pivot")}u.push({stepId:h,status:b})}try{await new Re(e).syncMissionToGitNotes(t)}catch(m){bt.warn({syncError:m,missionId:t},"Git Notes sync deferred")}return{content:[{type:"text",text:JSON.stringify({missionId:t,updates:u,artifacts_added:l?.length||0,message:"Status updated",commit:p},null,2)}]}}catch(d){throw bt.error({error:d,repoPath:e},"Failed to update status"),new Error(`Failed to update status: ${d instanceof Error?d.message:String(d)}`)}}N();var To=_.child({module:"mcp:tools:ops:graph"});async function vo(s){let{repoPath:e,missionId:t,depth:n,limit:i,format:r="mermaid"}=s;To.info({repoPath:e,missionId:t,format:r},"Generating mission graph");try{let{GraphExporterService:o}=await Promise.resolve().then(()=>(Ro(),xo));return{content:[{type:"text",text:await new o(e).generateGraph({includeCompleted:!0,format:r,focusMissionId:t,depth:n,limit:i})}]}}catch(o){throw To.error({error:o,repoPath:e},"Failed to generate mission graph"),new Error(`Failed to generate mission graph: ${o.message}`)}}F();N();var Ut=_.child({module:"mcp:tools:ops:log"});async function wo(s){let{repoPath:e,missionId:t,type:n,content:i,filePath:r,symbolName:o}=s;Ut.info({repoPath:e,type:n,symbolName:o},"Logging intent");let{missions:l,exports:c,intentLogs:a}=k.getInstance(e);try{let p=t??null;if(p){if(!l.findById(p))throw new Error(`Mission ${p} not found. Use shadow_ops_briefing to see available missions.`)}else{let b=l.findActive();b.length>0?(p=b[0].id,Ut.debug({missionId:p},"Auto-resolved to active mission")):(p=null,Ut.debug("No active mission found, logging as system/unlinked intent"))}let d=null,u=null,m=o||null;if(o){let E=(r?c.findByNameAndFile(o,r):c.findByName(o))[0];E?(d=E.id,u=E.signature,m=E.name):Ut.warn({symbolName:o,filePath:r},"Symbol not found for intent linking")}let h=a.create({mission_id:p,symbol_id:d,file_path:r||null,type:n,content:i,confidence:1,symbol_name:m,signature:u,commit_sha:null});return{content:[{type:"text",text:JSON.stringify({logId:h,missionId:p,symbolId:d,status:"logged",message:d?`Intent linked to symbol "${o}"`:"Intent logged (unlinked)"},null,2)}]}}catch(p){throw Ut.error({error:p,repoPath:e},"Failed to log intent"),new Error(`Failed to log intent: ${p instanceof Error?p.message:String(p)}`)}}F();N();var Io=_.child({module:"mcp:tools:ops:synthesize"});async function ko(s){let{repoPath:e,missionId:t}=s;Io.info({repoPath:e,missionId:t},"Synthesizing mission");let{missions:n}=k.getInstance(e);try{if(!n.findById(t))throw new Error(`Mission ${t} not found`);let o=await new ze(e).distillMission(t);return{content:[{type:"text",text:JSON.stringify({missionId:t,adr:o.adr,metrics:o.metrics},null,2)}]}}catch(i){throw Io.error({error:i,repoPath:e},"Failed to synthesize ADR"),new Error(`Failed to synthesize ADR: ${i instanceof Error?i.message:String(i)}`)}}import Xc from"path";var q={...f,box:te,table:rn,list:rs};async function Co(s){let[e,...t]=s;if(!e||!["plan","briefing","update","log","synthesize","graph"].includes(e)){console.log(""),console.log(`  ${q.bold("Usage: ")} liquid-shadow mission <action> [options]`),console.log(""),console.log(`  ${q.bold("Actions: ")}`),console.log(`    ${q.cyan("plan")} <repo> <name> <goal>      Plan a new mission`),console.log(`    ${q.cyan("update")} <repo> <id> <status>    Update mission status`),console.log(`    ${q.cyan("log")} <repo> <id> <type> <msg>   Log a mission discovery/intent`),console.log(`    ${q.cyan("briefing")} <repo> [--branch]     Get mission briefing`),console.log(`    ${q.cyan("synthesize")} <repo> <id>        Distill mission into ADR`),console.log(`    ${q.cyan("graph")} <repo> [id]             Generate mission lineage graph`),console.log("");return}await U(async()=>{let n=t[0]?Xc.resolve(t[0]):process.cwd();switch(e){case"plan":{let[i,r,o]=t;if(!r||!o){console.error(`  ${q.red("\u2716")} Usage: mission plan <repo> <name> <goal>`);return}let l=await go({repoPath:n,name:r,goal:o}),c=JSON.parse(l.content[0].text);console.log(`  ${q.green("\u2714")} Mission planned (ID: ${c.missionId})`);break}case"update":{let[i,r,o]=t;if(!r||!o){console.error(`  ${q.red("\u2716")} Usage: mission update <repo> <id> <status>`);return}await So({repoPath:n,missionId:parseInt(r),status:o}),console.log(`  ${q.green("\u2714")} Status updated to ${o}`);break}case"log":{let[i,r,o,...l]=t;if(!r||!o||l.length===0){console.error(`  ${q.red("\u2716")} Usage: mission log <repo> <id> <type> <message>`);return}await wo({repoPath:n,missionId:parseInt(r),type:o,content:l.join(" ")}),console.log(`  ${q.green("\u2714")} Intent logged`);break}case"synthesize":{let[i,r]=t;if(!r){console.error(`  ${q.red("\u2716")} Usage: mission synthesize <repo> <id>`);return}let o=await ko({repoPath:n,missionId:parseInt(r)});console.log(""),q.box("Mission Synthesis (ADR)",o.content[0].text,"magenta");break}case"graph":{let[i,r]=t,o=await vo({repoPath:n,missionId:r?parseInt(r):void 0,format:"mermaid"});console.log(""),console.log(o.content[0].text);break}case"briefing":{let i,r=t.indexOf("--branch");r!==-1&&t[r+1]&&(i=t[r+1]);let o=await yo({repoPath:n,branch:i});if(o.content&&o.content[0]){let l=o.content[0].text;try{let c=JSON.parse(l);if(c.mission){console.log(""),console.log(q.bold(q.cyan(` Mission Dashboard: ${c.mission.name} `))),q.box("Tactical Goal",c.mission.goal,"cyan");let a=c.mission.status==="completed"?"green":c.mission.status==="failed"?"red":"yellow",p=[["Status",q.bold(q[a](c.mission.status.toUpperCase()))],["ID",`#${c.mission.id}`],["Branch",c.mission.git_branch||"main"]];q.table(["Field","Value"],p),c.recent_activity&&c.recent_activity.length>0&&(console.log(`  ${q.bold("Recent Activity:")}`),q.list(c.recent_activity.slice(0,5).map(d=>`${q.dim(`[${d.type.toUpperCase()}]`)} ${d.content}`)))}else console.log(l)}catch{console.log(l)}}break}}})}import Ni from"path";async function Lo(s){let[e,...t]=s;if(!e||!["symbol","file"].includes(e)){console.log(""),console.log(`  ${f.bold("Usage: ")} liquid-shadow inspect <symbol|file> [options]`),console.log(""),console.log(`  ${f.bold("Actions: ")}`),console.log(`    ${f.cyan("symbol")} <repo> <name>    Read source code for a symbol`),console.log(`    ${f.cyan("file")} <repo> <path>     Get a token-efficient file summary`),console.log("");return}await U(async()=>{let n=t[0]?Ni.resolve(t[0]):process.cwd();if(e==="symbol"){let i=t[1];if(!i){console.error(`  ${f.red("\u2716")} Please provide a symbol name`);return}let r=await gt({repoPath:n,symbolName:i});console.log(""),r.content&&r.content[0]&&console.log(r.content[0].text)}else{let i=t[1];if(!i){console.error(`  ${f.red("\u2716")} Please provide a file path`);return}let r=Ni.isAbsolute(i)?i:Ni.join(n,i),o=await An({repoPath:n,filePath:r});console.log(""),o.content&&o.content[0]&&console.log(o.content[0].text)}})}var $o=["index","status","metrics","benchmark","tree","trace","watch","search-config","search-concept","search-symbol","search-fuzzy","hooks","workspace","mission","inspect","completion"],Zc=["--help","-h","--version","-v","--dir","-d"],el={index:["--output","-o","--level","-l","--subPath","--force","--deep"],tree:["--subPath","--depth","-d"],trace:["--dir","-d"],"search-config":["--dir","-d","--kind"],"search-concept":["--dir","-d","--interactive","-i"],"search-symbol":["--dir","-d","--interactive","-i"],"search-fuzzy":["--dir","-d","--interactive","-i"]};function tl(){let s=Object.entries(el).map(([n,i])=>`    ${n}) opts="${i.join(" ")}" ;;`).join(`
-`),e=$o.join(" ");return`# Bash completion for liquid-shadow. Usage: source <(liquid-shadow completion bash)
+*Generated by Liquid Shadow Reasoning Engine v1*`,t){this.intentLogs.create({mission_id:e,type:"adr",content:o,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:null});try{await this.persistencePivot.syncMissionToGitNotes(e),zn.info({missionId:e},"Tactical Briefing synthesized, archived, and synced to Git Notes.")}catch(c){zn.error({missionId:e,error:c},"Failed to sync ADR to Git Notes")}}else zn.info({missionId:e},"Tactical Briefing synthesized (dry-run).");return{missionId:e,adr:o,metrics:{totalLogs:n.length,symbolCount:r.size}}}gatherConsolidatedLogs(e,t=0){let n=this.intentLogs.findByMission(e,500);if(t>2)return n;let s=this.missions.findByParentId(e);for(let r of s)n.push(...this.gatherConsolidatedLogs(r.id,t+1));return n.filter(r=>r.type!=="adr"&&r.type!=="system")}};P();import{Visitor as sl}from"@swc/core/Visitor.js";import*as To from"@swc/core";var il=_.child({module:"verification-engine"}),Ms=class extends sl{foundUsage=!1;foundImport=!1;rule;currentFunctionName=null;constructor(e){super(),this.rule=e}visitImportDeclaration(e){return this.rule.type==="import"&&e.source.value===this.rule.target&&(this.foundImport=!0),super.visitImportDeclaration(e)}visitFunctionDeclaration(e){let t=this.currentFunctionName;this.currentFunctionName=e.identifier.value;let n=super.visitFunctionDeclaration(e);return this.currentFunctionName=t,n}visitCallExpression(e){return this.rule.type==="usage"&&e.callee.type==="Identifier"&&e.callee.value===this.rule.target&&(!this.rule.context||this.currentFunctionName===this.rule.context)&&(this.foundUsage=!0),super.visitCallExpression(e)}},Gn=class{async verify(e,t){try{let n=await To.parse(e,{syntax:"typescript",tsx:!0,comments:!1}),s=new Ms(t);s.visitProgram(n);let r=!1,o=[];if(t.type==="import")r=s.foundImport,r||o.push(`Required import "${t.target}" not found.`);else if(t.type==="usage"){if(r=s.foundUsage,!r){let c=t.context?` in function "${t.context}"`:"";o.push(`Required usage of "${t.target}"${c} not found.`)}}else t.type==="pattern"&&(r=new RegExp(t.target).test(e),r||o.push(`Required pattern "${t.target}" not found.`));return{passed:r,errors:o}}catch(n){return il.error({error:n},"Verification failed due to parse error"),{passed:!1,errors:[`Parse error: ${n.message}`]}}}};import Ro from"path";import qn from"fs";var bt=_.child({module:"mcp:tools:ops:track"});async function vo(i){let{repoPath:e,missionId:t,stepId:n,status:s,contextPivot:r,updates:o,artifacts:c}=i,{missions:a,intentLogs:l}=C.getInstance(e),p=fe(e);bt.info({repoPath:e,missionId:t,singleStep:n,batchCount:o?.length,artifactCount:c?.length},"Updating mission status");try{if(c&&Array.isArray(c))for(let m of c)a.addArtifact(t,m.type,m.identifier,m.metadata);let d=[];if(o&&Array.isArray(o)&&d.push(...o),n&&s&&d.push({stepId:n,status:s,contextPivot:r}),s&&!n){if(a.updateStatus(t,s,p||void 0),l.create({mission_id:t,type:"system",content:`Mission status changed to "${s}"`,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:p}),s==="completed")try{await new Ge(e).distillMission(t),bt.info({missionId:t},"Auto-Synthesis completed successfully")}catch(m){bt.warn({synthesisError:m,missionId:t},"Auto-Synthesis deferred or failed")}if(!d.length)return{content:[{type:"text",text:JSON.stringify({missionId:t,status:s,message:"Mission status updated successfully.",artifacts_added:c?.length||0,commit:p},null,2)}]}}if(d.length===0&&(!c||c.length===0))throw new Error("No updates provided. Must specify either 'updates', 'stepId'/'status', 'status' (top-level), or 'artifacts'.");let u=[];for(let m of d){let{stepId:f,status:h,contextPivot:b}=m,y=a.findById(t);if(!y)throw new Error(`Mission ID ${t} not found`);let g=JSON.parse(y.strategy_graph||"{}"),S=null;if(Array.isArray(g)?S=g.find(R=>R.id===f):g.nodes&&Array.isArray(g.nodes)?S=g.nodes.find(R=>R.id===f):g.steps?Array.isArray(g.steps)?S=g.steps.find(R=>R.id===f):S=g.steps[f]:g[f]&&(S=g[f]),!S)throw new Error(`Step ID "${f}" not found`);if(h==="completed"&&S.verification){let R=new Gn,w=Array.isArray(S.verification)?S.verification:[S.verification];for(let T of w){let v=T.filePath;if(v&&!Ro.isAbsolute(v)&&(v=Ro.join(e,v)),v){if(!qn.existsSync(v))throw new Error(`Verification failed: File not found at ${v}`);let k=await R.verify(qn.readFileSync(v,"utf8"),T);if(!k.passed)throw new Error(`Verification failed: ${k.errors.join("")}`)}else{let k=a.getWorkingSet(t),F=!1;for(let x of k){if(!qn.existsSync(x.file_path))continue;if((await R.verify(qn.readFileSync(x.file_path,"utf8"),T)).passed){F=!0;break}}if(!F)throw new Error(`Verification failed for rule "${T.target}" in working set.`)}}}if(S.status=h,a.update(t,{strategy_graph:JSON.stringify(g),commit_sha:p}),l.create({mission_id:t,type:"system",content:`Step "${f}" updated to "${h}"`,confidence:1,symbol_id:null,file_path:null,symbol_name:null,signature:null,commit_sha:p}),b)try{let R=JSON.parse(b);if(a.clearWorkingSet(t),R.files&&Array.isArray(R.files))for(let w of R.files)a.addToWorkingSet(t,w)}catch(R){bt.warn({error:R},"Failed to apply context pivot")}u.push({stepId:f,status:h})}try{await new ve(e).syncMissionToGitNotes(t)}catch(m){bt.warn({syncError:m,missionId:t},"Git Notes sync deferred")}return{content:[{type:"text",text:JSON.stringify({missionId:t,updates:u,artifacts_added:c?.length||0,message:"Status updated",commit:p},null,2)}]}}catch(d){throw bt.error({error:d,repoPath:e},"Failed to update status"),new Error(`Failed to update status: ${d instanceof Error?d.message:String(d)}`)}}P();var $o=_.child({module:"mcp:tools:ops:graph"});async function ko(i){let{repoPath:e,missionId:t,depth:n,limit:s,format:r="mermaid"}=i;$o.info({repoPath:e,missionId:t,format:r},"Generating mission graph");try{let{GraphExporterService:o}=await Promise.resolve().then(()=>(Co(),Io));return{content:[{type:"text",text:await new o(e).generateGraph({includeCompleted:!0,format:r,focusMissionId:t,depth:n,limit:s})}]}}catch(o){throw $o.error({error:o,repoPath:e},"Failed to generate mission graph"),new Error(`Failed to generate mission graph: ${o.message}`)}}U();P();var Bt=_.child({module:"mcp:tools:ops:log"});async function Lo(i){let{repoPath:e,missionId:t,type:n,content:s,filePath:r,symbolName:o}=i;Bt.info({repoPath:e,type:n,symbolName:o},"Logging intent");let{missions:c,exports:a,intentLogs:l}=C.getInstance(e);try{let p=t??null;if(p){if(!c.findById(p))throw new Error(`Mission ${p} not found. Use shadow_ops_briefing to see available missions.`)}else{let h=c.findActive();h.length>0?(p=h[0].id,Bt.debug({missionId:p},"Auto-resolved to active mission")):(p=null,Bt.debug("No active mission found, logging as system/unlinked intent"))}let d=null,u=null,m=o||null;if(o){let b=(r?a.findByNameAndFile(o,r):a.findByName(o))[0];b?(d=b.id,u=b.signature,m=b.name):Bt.warn({symbolName:o,filePath:r},"Symbol not found for intent linking")}let f=l.create({mission_id:p,symbol_id:d,file_path:r||null,type:n,content:s,confidence:1,symbol_name:m,signature:u,commit_sha:null});return{content:[{type:"text",text:JSON.stringify({logId:f,missionId:p,symbolId:d,status:"logged",message:d?`Intent linked to symbol "${o}"`:"Intent logged (unlinked)"},null,2)}]}}catch(p){throw Bt.error({error:p,repoPath:e},"Failed to log intent"),new Error(`Failed to log intent: ${p instanceof Error?p.message:String(p)}`)}}U();P();var No=_.child({module:"mcp:tools:ops:synthesize"});async function Ao(i){let{repoPath:e,missionId:t}=i;No.info({repoPath:e,missionId:t},"Synthesizing mission");let{missions:n}=C.getInstance(e);try{if(!n.findById(t))throw new Error(`Mission ${t} not found`);let o=await new Ge(e).distillMission(t);return{content:[{type:"text",text:JSON.stringify({missionId:t,adr:o.adr,metrics:o.metrics},null,2)}]}}catch(s){throw No.error({error:s,repoPath:e},"Failed to synthesize ADR"),new Error(`Failed to synthesize ADR: ${s instanceof Error?s.message:String(s)}`)}}import rl from"path";var V={...E,box:se,table:an,list:li};async function Mo(i){let[e,...t]=i;if(!e||!["plan","briefing","update","log","synthesize","graph"].includes(e)){console.log(""),console.log(`  ${V.bold("Usage: ")} liquid-shadow mission <action> [options]`),console.log(""),console.log(`  ${V.bold("Actions: ")}`),console.log(`    ${V.cyan("plan")} <repo> <name> <goal>      Plan a new mission`),console.log(`    ${V.cyan("update")} <repo> <id> <status>    Update mission status`),console.log(`    ${V.cyan("log")} <repo> <id> <type> <msg>   Log a mission discovery/intent`),console.log(`    ${V.cyan("briefing")} <repo> [--branch]     Get mission briefing`),console.log(`    ${V.cyan("synthesize")} <repo> <id>        Distill mission into ADR`),console.log(`    ${V.cyan("graph")} <repo> [id]             Generate mission lineage graph`),console.log("");return}await B(async()=>{let n=t[0]?rl.resolve(t[0]):process.cwd();switch(e){case"plan":{let[s,r,o]=t;if(!r||!o){console.error(`  ${V.red("\u2716")} Usage: mission plan <repo> <name> <goal>`);return}let c=await _o({repoPath:n,name:r,goal:o}),a=JSON.parse(c.content[0].text);console.log(`  ${V.green("\u2714")} Mission planned (ID: ${a.missionId})`);break}case"update":{let[s,r,o]=t;if(!r||!o){console.error(`  ${V.red("\u2716")} Usage: mission update <repo> <id> <status>`);return}await vo({repoPath:n,missionId:parseInt(r),status:o}),console.log(`  ${V.green("\u2714")} Status updated to ${o}`);break}case"log":{let[s,r,o,...c]=t;if(!r||!o||c.length===0){console.error(`  ${V.red("\u2716")} Usage: mission log <repo> <id> <type> <message>`);return}await Lo({repoPath:n,missionId:parseInt(r),type:o,content:c.join(" ")}),console.log(`  ${V.green("\u2714")} Intent logged`);break}case"synthesize":{let[s,r]=t;if(!r){console.error(`  ${V.red("\u2716")} Usage: mission synthesize <repo> <id>`);return}let o=await Ao({repoPath:n,missionId:parseInt(r)});console.log(""),V.box("Mission Synthesis (ADR)",o.content[0].text,"magenta");break}case"graph":{let[s,r]=t,o=await ko({repoPath:n,missionId:r?parseInt(r):void 0,format:"mermaid"});console.log(""),console.log(o.content[0].text);break}case"briefing":{let s=await xo({repoPath:n});if(s.content&&s.content[0]){let r=s.content[0].text;try{let o=JSON.parse(r);if(o.mission){console.log(""),console.log(V.bold(V.cyan(` Mission Dashboard: ${o.mission.name} `))),V.box("Tactical Goal",o.mission.goal,"cyan");let c=o.mission.status==="completed"?"green":o.mission.status==="failed"?"red":"yellow",a=[["Status",V.bold(V[c](o.mission.status.toUpperCase()))],["ID",`#${o.mission.id}`],["Branch",o.mission.git_branch||"main"]];V.table(["Field","Value"],a),o.recent_activity&&o.recent_activity.length>0&&(console.log(`  ${V.bold("Recent Activity:")}`),V.list(o.recent_activity.slice(0,5).map(l=>`${V.dim(`[${l.type.toUpperCase()}]`)} ${l.content}`)))}else console.log(r)}catch{console.log(r)}}break}}})}import Ds from"path";async function Po(i){let[e,...t]=i;if(!e||!["symbol","file"].includes(e)){console.log(""),console.log(`  ${E.bold("Usage: ")} liquid-shadow inspect <symbol|file> [options]`),console.log(""),console.log(`  ${E.bold("Actions: ")}`),console.log(`    ${E.cyan("symbol")} <repo> <name>    Read source code for a symbol`),console.log(`    ${E.cyan("file")} <repo> <path>     Get a token-efficient file summary`),console.log("");return}await B(async()=>{let n=t[0]?Ds.resolve(t[0]):process.cwd();if(e==="symbol"){let s=t[1];if(!s){console.error(`  ${E.red("\u2716")} Please provide a symbol name`);return}let r=await gt({repoPath:n,symbolName:s});console.log(""),r.content&&r.content[0]&&console.log(r.content[0].text)}else{let s=t[1];if(!s){console.error(`  ${E.red("\u2716")} Please provide a file path`);return}let r=Ds.isAbsolute(s)?s:Ds.join(n,s),o=await Mn({repoPath:n,filePath:r});console.log(""),o.content&&o.content[0]&&console.log(o.content[0].text)}})}var Do=["index","status","metrics","benchmark","tree","trace","watch","search-config","search-concept","search-symbol","search-fuzzy","hooks","workspace","mission","inspect","completion"],ol=["--help","-h","--version","-v","--dir","-d"],al={index:["--output","-o","--level","-l","--subPath","--force","--deep"],tree:["--subPath","--depth","-d"],trace:["--dir","-d"],"search-config":["--dir","-d","--kind"],"search-concept":["--dir","-d","--interactive","-i"],"search-symbol":["--dir","-d","--interactive","-i"],"search-fuzzy":["--dir","-d","--interactive","-i"]};function cl(){let i=Object.entries(al).map(([n,s])=>`    ${n}) opts="${s.join(" ")}" ;;`).join(`
+`),e=Do.join(" ");return`# Bash completion for liquid-shadow. Usage: source <(liquid-shadow completion bash)
 _liquid_shadow() {
   local cur="\${COMP_WORDS[COMP_CWORD]}"
   local words=("\${COMP_WORDS[@]}")
@@ -775,10 +821,10 @@ _liquid_shadow() {
     if [[ "\${words[$i]}" != -* ]]; then cmd="\${words[$i]}"; break; fi
     ((i++))
   done
-  local opts="${Zc.join(" ")}"
+  local opts="${ol.join(" ")}"
   if [ -n "$cmd" ]; then
     case "$cmd" in
-${s}
+${i}
     esac
   else
     COMPREPLY=($(compgen -W "${e}" -- "$cur"))
@@ -787,11 +833,11 @@ ${s}
   COMPREPLY=($(compgen -W "$opts" -- "$cur"))
 }
 complete -F _liquid_shadow liquid-shadow
-`}function nl(){return`# Zsh completion for liquid-shadow. Usage: source <(liquid-shadow completion zsh)
+`}function ll(){return`# Zsh completion for liquid-shadow. Usage: source <(liquid-shadow completion zsh)
 # Run after compinit (e.g. in .zshrc after compinit)
 
 _liquid_shadow() {
-  local -a cmds; cmds=(${$o.map(e=>`'${e}'`).join(" ")})
+  local -a cmds; cmds=(${Do.map(e=>`'${e}'`).join(" ")})
   if [ $CURRENT -eq 2 ]; then
     _describe 'command' cmds
     return
@@ -808,7 +854,7 @@ _liquid_shadow() {
   _describe 'flag' fl
 }
 compdef _liquid_shadow liquid-shadow
-`}async function No(s){s==="bash"?console.log(tl()):s==="zsh"?console.log(nl()):(console.error("Usage: liquid-shadow completion <bash|zsh>"),console.error("Then: source <(liquid-shadow completion bash)  # or zsh"),process.exit(1))}import il from"fs";import sl from"path";var rl=2e3;async function Ao(s){let e=sl.resolve(s);await U(async()=>{le("Watch mode");let t=we(e),n=null,i=()=>{n&&clearTimeout(n),n=setTimeout(async()=>{n=null;try{console.log(""),console.log(f.dim("  Changes detected, reindexing...")),await j(e,5,!1,!0),console.log(f.green("  Reindex complete."))}catch(r){console.error(f.red("  Reindex failed:"),r instanceof Error?r.message:r)}},rl)};try{il.watch(e,{recursive:!0},(r,o)=>{o&&!o.includes("node_modules")&&i()}),console.log(f.cyan(`  Watching ${e}`)),console.log(f.dim("  Ignore: "+(t.ignore?.length?t.ignore.join(", "):"default"))),Rt("Ctrl+C to stop"),await new Promise((r,o)=>{process.on("SIGINT",()=>o(new Error("SIGINT"))),process.on("SIGTERM",()=>o(new Error("SIGTERM")))}).catch(()=>{})}finally{n&&clearTimeout(n),await G(e)}})}F();N();var ol=_.child({module:"narrative-service"}),Gn=class{missions;briefingEngine;repoPath;constructor(e){this.repoPath=e;let{missions:t}=k.getInstance(e);this.missions=t,this.briefingEngine=new ze(e)}async generateChronicle(e={}){ol.info(e,"Generating Repo Chronicle...");let n=this.missions.findAll().filter(a=>a.parent_id===null&&a.status!=="planned");e.since&&(n=n.filter(a=>a.updated_at>=e.since)),e.until&&(n=n.filter(a=>a.updated_at<=e.until)),n.sort((a,p)=>p.updated_at-a.updated_at);let i=e.offset||0,r=e.limit||10;n=n.slice(i,i+r);let o=[],l=[],c=[];for(let a of n){let p=this.missions.findByParentId(a.id),d=p.length>0,u=await this.briefingEngine.distillMission(a.id,!1);if(d){let m=[];for(let b of p)m.push(await this.mapMissionToEpisode(b));m.unshift(await this.mapMissionToEpisode(a));let h={kind:"initiative",root_mission_id:a.id,title:a.name,strategy_graph:a.strategy_graph?JSON.parse(a.strategy_graph):{},episodes:m,synthesized_narrative:u.adr};o.push(h),c.push(h)}else{let m=await this.mapMissionToEpisode(a,u.adr);l.push(m),c.push(m)}}return{repo_path:this.repoPath,generated_at:Date.now(),initiatives:o,unattached_episodes:l,timeline:c}}async mapMissionToEpisode(e,t){let n=t;return n||(n=(await this.briefingEngine.distillMission(e.id,!1)).adr),{kind:"episode",mission_id:e.id,title:e.name,goal:e.goal,outcome:e.outcome_contract,intents:[],adr_summary:n}}renderChronicleMarkdown(e){let t=`# Repository Chronicle
+`}async function Oo(i){i==="bash"?console.log(cl()):i==="zsh"?console.log(ll()):(console.error("Usage: liquid-shadow completion <bash|zsh>"),console.error("Then: source <(liquid-shadow completion bash)  # or zsh"),process.exit(1))}import pl from"fs";import ul from"path";var dl=2e3;async function Fo(i){let e=ul.resolve(i);await B(async()=>{le("Watch mode");let t=Ce(e),n=null,s=()=>{n&&clearTimeout(n),n=setTimeout(async()=>{n=null;try{console.log(""),console.log(E.dim("  Changes detected, reindexing...")),await z(e,5,!1,!0),console.log(E.green("  Reindex complete."))}catch(r){console.error(E.red("  Reindex failed:"),r instanceof Error?r.message:r)}},dl)};try{pl.watch(e,{recursive:!0},(r,o)=>{o&&!o.includes("node_modules")&&s()}),console.log(E.cyan(`  Watching ${e}`)),console.log(E.dim("  Ignore: "+(t.ignore?.length?t.ignore.join(", "):"default"))),Tt("Ctrl+C to stop"),await new Promise((r,o)=>{process.on("SIGINT",()=>o(new Error("SIGINT"))),process.on("SIGTERM",()=>o(new Error("SIGTERM")))}).catch(()=>{})}finally{n&&clearTimeout(n),await q(e)}})}U();P();var ml=_.child({module:"narrative-service"}),Jn=class{missions;briefingEngine;repoPath;constructor(e){this.repoPath=e;let{missions:t}=C.getInstance(e);this.missions=t,this.briefingEngine=new Ge(e)}async generateChronicle(e={}){ml.info(e,"Generating Repo Chronicle...");let n=this.missions.findAll().filter(l=>l.parent_id===null&&l.status!=="planned");e.since&&(n=n.filter(l=>l.updated_at>=e.since)),e.until&&(n=n.filter(l=>l.updated_at<=e.until)),n.sort((l,p)=>p.updated_at-l.updated_at);let s=e.offset||0,r=e.limit||10;n=n.slice(s,s+r);let o=[],c=[],a=[];for(let l of n){let p=this.missions.findByParentId(l.id),d=p.length>0,u=await this.briefingEngine.distillMission(l.id,!1);if(d){let m=[];for(let h of p)m.push(await this.mapMissionToEpisode(h));m.unshift(await this.mapMissionToEpisode(l));let f={kind:"initiative",root_mission_id:l.id,title:l.name,strategy_graph:l.strategy_graph?JSON.parse(l.strategy_graph):{},episodes:m,synthesized_narrative:u.adr};o.push(f),a.push(f)}else{let m=await this.mapMissionToEpisode(l,u.adr);c.push(m),a.push(m)}}return{repo_path:this.repoPath,generated_at:Date.now(),initiatives:o,unattached_episodes:c,timeline:a}}async mapMissionToEpisode(e,t){let n=t;return n||(n=(await this.briefingEngine.distillMission(e.id,!1)).adr),{kind:"episode",mission_id:e.id,title:e.name,goal:e.goal,outcome:e.outcome_contract,intents:[],adr_summary:n}}renderChronicleMarkdown(e){let t=`# Repository Chronicle
 
 `;if(t+=`*Generated at ${new Date(e.generated_at).toISOString()}*
 
@@ -819,4 +865,4 @@ compdef _liquid_shadow liquid-shadow
 `,t+=`${n.adr_summary}
 
 `),t+=`---
-`;return t}};N();import al from"path";async function Mo(s,e){let t=al.resolve(s||process.cwd()),n=e.format==="json"?"json":"markdown",i=_.child({module:"cli:chronicle",repoPath:t});i.info("Generating repository chronicle...");try{let r=new Gn(t),o=await r.generateChronicle({limit:e.limit,offset:e.offset,since:e.since,until:e.until});console.log(n==="json"?JSON.stringify(o,null,2):r.renderChronicleMarkdown(o))}catch(r){i.error({error:r},"Failed to generate chronicle"),console.error(`Error: ${r instanceof Error?r.message:String(r)}`),process.exit(1)}}function ae(s){let e=process.cwd();return Oi(e,s.flags)}process.on("unhandledRejection",s=>{console.error("\x1B[31mUnhandled Rejection:\x1B[0m",s),G().then(()=>process.exit(1))});process.on("uncaughtException",s=>{console.error("\x1B[31mUncaught Exception:\x1B[0m",s),G().then(()=>process.exit(1))});var Z=cl().name("liquid-shadow").version("1.0.2").description("Tactical Repository Intelligence Operative - Liquid Shadow Ecosystem").scriptName("liquid-shadow");Z.command("index","Index the repository for AI analysis",{parameters:["[dir]"],flags:{output:{type:String,alias:"o",description:"Export to JSON file instead of indexing"},level:{type:String,alias:"l",description:"Detail level",default:"detailed"},subPath:{type:String,description:"Only process files within this subpath"},force:{type:Boolean,description:"Force re-indexing of all files",default:!1},deep:{type:Boolean,description:"Perform deep semantic indexing (headings + symbol embeddings)",default:!0}}}).on("index",async s=>{let e=ae(s),t={...s.flags,dir:s.flags.dir??e.dir,level:s.flags.level??e.level,deep:s.flags.deep??e.deep};t.deep==="false"||t.deep===!1?t.deep=!1:t.deep=!0,await nr(s.parameters.dir||e.dir,t)});Z.command("status","Show current repository intelligence status",{parameters:["[dir]"]}).on("status",async s=>{let e=ae(s);await fs(s.parameters.dir||e.dir)});Z.command("metrics","Show performance metrics and observability data",{parameters:["[dir]"]}).on("metrics",async s=>{let e=ae(s);await xs(s.parameters.dir||e.dir)});Z.command("benchmark","Run performance benchmark on repository indexing",{parameters:["[dir]"]}).on("benchmark",async s=>{let e=ae(s);await sr(s.parameters.dir||e.dir)});Z.command("tree","Visualize repository structure as a tree",{parameters:["[dir]"],flags:{subPath:{type:String,description:"Subpath to visualize"},depth:{type:String,alias:"d",description:"Max depth",default:"3"}}}).on("tree",async s=>{let e=ae(s);await Zs(s.parameters.dir||e.dir,{...s.flags,dir:s.flags.dir??e.dir})});Z.command("recon","Repository reconnaissance and architecture analysis",{parameters:["<mode>","[dir]"],flags:{subPath:{type:String,description:"Subpath to focus on"}}}).on("recon",async s=>{let e=ae(s);await zr(s.parameters.mode,s.parameters.dir||e.dir,{...s.flags})});Z.command("trace","Trace execution flow for a given file/symbol",{parameters:["<file>","[symbolName]"],flags:{dir:{type:String,alias:"d",default:"."}}}).on("trace",async s=>{let e=ae(s);await cr(s.parameters.file,{...s.flags,dir:s.flags.dir??e.dir,symbolName:s.parameters.symbolName})});Z.command("sync","Deep synchronize intelligence lifecycle (Trace + Repair + Re-hydrate)",{parameters:["[dir]"],flags:{since:{type:String,description:"Analyze since specific commit hash"}}}).on("sync",async s=>{let e=ae(s);await Ur(s.parameters.dir||e.dir,{sinceCommit:s.flags.since||void 0})});Z.command("search-config","Search for configuration values",{parameters:["[key]"],flags:{dir:{type:String,alias:"d",default:"."},kind:{type:String,description:"Filter by config kind"}}}).on("search-config",async s=>{let e=ae(s);await to(s.parameters.key,{...s.flags,dir:s.flags.dir??e.dir})});Z.command("search-concept","Search for files by concept/intent (Semantic)",{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-concept",async s=>{let e=ae(s);await Xr(s.parameters.query,{...s.flags,dir:s.flags.dir??e.dir})});Z.command("search-symbol","Search for specific code symbols",{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-symbol",async s=>{let e=ae(s);await Zr(s.parameters.query,{...s.flags,dir:s.flags.dir??e.dir})});Z.command("search-fuzzy",'Fuzzy search for symbols (e.g., "usc" finds "UserServiceClient")',{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-fuzzy",async s=>{let e=ae(s);await eo(s.parameters.query,{...s.flags,dir:s.flags.dir??e.dir})});Z.command("hooks","Manage git hooks for automatic intelligence updates",{parameters:["<action>","[path]"]}).on("hooks",async s=>{await no([s.parameters.action,s.parameters.path])});Z.command("workspace","Workspace-level mission orchestration",{parameters:["<action>","[args...]"]}).on("workspace",async s=>{await mo([s.parameters.action,...s.parameters.args])});Z.command("mission","Mission management (start, plan, briefing, distill)",{parameters:["<action>","[args...]"]}).on("mission",async s=>{await Co([s.parameters.action,...s.parameters.args])});Z.command("inspect","Deep inspection of specific files or symbols",{parameters:["<mode>","[args...]"]}).on("inspect",async s=>{await Lo([s.parameters.mode,...s.parameters.args])});Z.command("watch","Watch repo and reindex on file changes",{parameters:["[dir]"]}).on("watch",async s=>{let e=ae(s);await Ao(s.parameters.dir||e.dir)});Z.command("chronicle","Generate a repository-wide narrative feed (ADRs/Epics)",{parameters:["[dir]"],flags:{format:{type:String,alias:"f",description:"Output format (markdown|json)",default:"markdown"},limit:{type:Number,alias:"l",description:"Limit number of entries",default:10},offset:{type:Number,description:"Pagination offset",default:0},since:{type:String,description:"Show entries since date (YYYY-MM-DD)"},until:{type:String,description:"Show entries until date (YYYY-MM-DD)"}}}).on("chronicle",async s=>{let e=ae(s);await Mo(s.parameters.dir||e.dir,{...s.flags,format:s.flags.format,limit:s.flags.limit?parseInt(String(s.flags.limit),10):void 0,offset:s.flags.offset?parseInt(String(s.flags.offset),10):void 0,since:s.flags.since?Math.floor(new Date(String(s.flags.since)).getTime()/1e3):void 0,until:s.flags.until?Math.floor(new Date(String(s.flags.until)).getTime()/1e3):void 0})});Z.command("completion","Generate shell completion script (bash or zsh)",{parameters:["<shell>"]}).on("completion",async s=>{await No(s.parameters.shell||"")});Z.parse();
+`;return t}};P();import hl from"path";async function Ho(i,e){let t=hl.resolve(i||process.cwd()),n=e.format==="json"?"json":"markdown",s=_.child({module:"cli:chronicle",repoPath:t});s.info("Generating repository chronicle...");try{let r=new Jn(t),o=await r.generateChronicle({limit:e.limit,offset:e.offset,since:e.since,until:e.until});console.log(n==="json"?JSON.stringify(o,null,2):r.renderChronicleMarkdown(o))}catch(r){s.error({error:r},"Failed to generate chronicle"),console.error(`Error: ${r instanceof Error?r.message:String(r)}`),process.exit(1)}}function ce(i){let e=process.cwd();return js(e,i.flags)}process.on("unhandledRejection",i=>{console.error("\x1B[31mUnhandled Rejection:\x1B[0m",i),q().then(()=>process.exit(1))});process.on("uncaughtException",i=>{console.error("\x1B[31mUncaught Exception:\x1B[0m",i),q().then(()=>process.exit(1))});var ee=fl().name("liquid-shadow").version("1.0.2").description("Tactical Repository Intelligence Operative - Liquid Shadow Ecosystem").scriptName("liquid-shadow");ee.command("index","Index the repository for AI analysis",{parameters:["[dir]"],flags:{output:{type:String,alias:"o",description:"Export to JSON file instead of indexing"},level:{type:String,alias:"l",description:"Detail level",default:"detailed"},subPath:{type:String,description:"Only process files within this subpath"},force:{type:Boolean,description:"Force re-indexing of all files",default:!1},deep:{type:Boolean,description:"Perform deep semantic indexing (headings + symbol embeddings)",default:!0}}}).on("index",async i=>{let e=ce(i),t={...i.flags,dir:i.flags.dir??e.dir,level:i.flags.level??e.level,deep:i.flags.deep??e.deep};t.deep==="false"||t.deep===!1?t.deep=!1:t.deep=!0,await or(i.parameters.dir||e.dir,t)});ee.command("status","Show current repository intelligence status",{parameters:["[dir]"]}).on("status",async i=>{let e=ce(i);await Ei(i.parameters.dir||e.dir)});ee.command("metrics","Show performance metrics and observability data",{parameters:["[dir]"]}).on("metrics",async i=>{let e=ce(i);await wi(i.parameters.dir||e.dir)});ee.command("benchmark","Run performance benchmark on repository indexing",{parameters:["[dir]"]}).on("benchmark",async i=>{let e=ce(i);await cr(i.parameters.dir||e.dir)});ee.command("tree","Visualize repository structure as a tree",{parameters:["[dir]"],flags:{subPath:{type:String,description:"Subpath to visualize"},depth:{type:String,alias:"d",description:"Max depth",default:"3"}}}).on("tree",async i=>{let e=ce(i);await sr(i.parameters.dir||e.dir,{...i.flags,dir:i.flags.dir??e.dir})});ee.command("recon","Repository reconnaissance and architecture analysis",{parameters:["<mode>","[dir]"],flags:{subPath:{type:String,description:"Subpath to focus on"}}}).on("recon",async i=>{let e=ce(i);await Yr(i.parameters.mode,i.parameters.dir||e.dir,{...i.flags})});ee.command("trace","Trace execution flow for a given file/symbol",{parameters:["<file>","[symbolName]"],flags:{dir:{type:String,alias:"d",default:"."}}}).on("trace",async i=>{let e=ce(i);await dr(i.parameters.file,{...i.flags,dir:i.flags.dir??e.dir,symbolName:i.parameters.symbolName})});ee.command("sync","Deep synchronize intelligence lifecycle (Trace + Repair + Re-hydrate)",{parameters:["[dir]"]}).on("sync",async i=>{let e=ce(i);await Gr(i.parameters.dir||e.dir,{})});ee.command("search-config","Search for configuration values",{parameters:["[key]"],flags:{dir:{type:String,alias:"d",default:"."},kind:{type:String,description:"Filter by config kind"}}}).on("search-config",async i=>{let e=ce(i);await ro(i.parameters.key,{...i.flags,dir:i.flags.dir??e.dir})});ee.command("search-concept","Search for files by concept/intent (Semantic)",{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-concept",async i=>{let e=ce(i);await no(i.parameters.query,{...i.flags,dir:i.flags.dir??e.dir})});ee.command("search-symbol","Search for specific code symbols",{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-symbol",async i=>{let e=ce(i);await so(i.parameters.query,{...i.flags,dir:i.flags.dir??e.dir})});ee.command("search-fuzzy",'Fuzzy search for symbols (e.g., "usc" finds "UserServiceClient")',{parameters:["<query>"],flags:{dir:{type:String,alias:"d",default:"."},interactive:{type:Boolean,alias:"i",description:"Interactive TUI: pick a result to inspect",default:!1}}}).on("search-fuzzy",async i=>{let e=ce(i);await io(i.parameters.query,{...i.flags,dir:i.flags.dir??e.dir})});ee.command("hooks","Manage git hooks for automatic intelligence updates",{parameters:["<action>","[path]"]}).on("hooks",async i=>{await oo([i.parameters.action,i.parameters.path])});ee.command("workspace","Workspace-level mission orchestration",{parameters:["<action>","[args...]"]}).on("workspace",async i=>{await yo([i.parameters.action,...i.parameters.args])});ee.command("mission","Mission management (start, plan, briefing, distill)",{parameters:["<action>","[args...]"]}).on("mission",async i=>{await Mo([i.parameters.action,...i.parameters.args])});ee.command("inspect","Deep inspection of specific files or symbols",{parameters:["<mode>","[args...]"]}).on("inspect",async i=>{await Po([i.parameters.mode,...i.parameters.args])});ee.command("watch","Watch repo and reindex on file changes",{parameters:["[dir]"]}).on("watch",async i=>{let e=ce(i);await Fo(i.parameters.dir||e.dir)});ee.command("chronicle","Generate a repository-wide narrative feed (ADRs/Epics)",{parameters:["[dir]"],flags:{format:{type:String,alias:"f",description:"Output format (markdown|json)",default:"markdown"},limit:{type:Number,alias:"l",description:"Limit number of entries",default:10},offset:{type:Number,description:"Pagination offset",default:0},since:{type:String,description:"Show entries since date (YYYY-MM-DD)"},until:{type:String,description:"Show entries until date (YYYY-MM-DD)"}}}).on("chronicle",async i=>{let e=ce(i);await Ho(i.parameters.dir||e.dir,{...i.flags,format:i.flags.format,limit:i.flags.limit?parseInt(String(i.flags.limit),10):void 0,offset:i.flags.offset?parseInt(String(i.flags.offset),10):void 0,since:i.flags.since?Math.floor(new Date(String(i.flags.since)).getTime()/1e3):void 0,until:i.flags.until?Math.floor(new Date(String(i.flags.until)).getTime()/1e3):void 0})});ee.command("completion","Generate shell completion script (bash or zsh)",{parameters:["<shell>"]}).on("completion",async i=>{await Oo(i.parameters.shell||"")});ee.parse();