@precisionutilityguild/liquid-shadow 1.0.0

package/dist/index.js

@@ -0,0 +1,453 @@
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+    CREATE TABLE IF NOT EXISTS schema_migrations (
+      version INTEGER PRIMARY KEY,
+      name TEXT NOT NULL,
+      applied_at REAL DEFAULT (unixepoch())
+    );
+  `)}function Jn(i){zn(i);let e=i.prepare("SELECT version FROM schema_migrations ORDER BY version").all();return new Set(e.map(t=>t.version))}function Yn(){let i=Gn;if(!_e.readdirSync(i).some(r=>r.match(/^\d{3}_.*\.sql$/))){let r=dt.resolve(i,"../../data/migrations");_e.existsSync(r)&&_e.readdirSync(r).some(c=>c.match(/^\d{3}_.*\.sql$/))&&(i=r)}let n=_e.readdirSync(i).filter(r=>r.match(/^\d{3}_.*\.sql$/)).sort(),s=[];for(let r of n){let o=r.match(/^(\d{3})_(.+)\.sql$/);if(!o)continue;let c=parseInt(o[1],10),l=o[2],p=_e.readFileSync(dt.join(i,r),"utf-8").split(/^-- DOWN$/m),d=p[0].trim(),m=p[1]?.trim();s.push({version:c,name:l,up:d,down:m})}return s}function Kn(i,e){Re.info({version:e.version,name:e.name},"Applying migration"),i.transaction(()=>{i.exec(e.up),i.prepare("INSERT INTO schema_migrations (version, name) VALUES (?, ?)").run(e.version,e.name)})(),Re.info({version:e.version},"Migration applied successfully")}function qt(i){let e=Jn(i),n=Yn().filter(s=>!e.has(s.version));if(n.length===0){Re.debug("No pending migrations");return}Re.info({count:n.length},"Running pending migrations");for(let s of n)Kn(i,s);Re.info("All migrations complete")}import Vn from"os";var K=_.child({module:"db"});function He(i){let e=Vn.homedir(),t=We.join(e,".mcp-liquid-shadow"),n=We.join(t,"dbs");mt.existsSync(n)||mt.mkdirSync(n,{recursive:!0});let s=Gt.createHash("sha256").update(i).digest("hex").substring(0,12),o=`${We.basename(i).replace(/[^a-zA-Z0-9-_]/g,"_")}_${s}.db`;return We.join(n,o)}function Zn(i,e){let t=e||He(i);K.info({repoPath:i,dbPath:t},"Initializing database");let n=new Qn(t);return n.pragma("journal_mode = WAL"),n.pragma("busy_timeout = 5000"),qt(n),Pe.set(i,t),X.set(t,n),K.info({repoPath:i,dbPath:t},"Database initialized successfully"),n}var X=new Map,Pe=new Map;function ft(i){return Gt.createHash("sha256").update(i,"utf8").digest("hex")}function zt(i,e){return e?ft(i)!==e:!0}function ue(i){let e=Pe.get(i)||He(i),t=X.get(e);if(t){if(t.open)return t;X.delete(e)}let n=Zn(i);return X.set(e,n),n}function Jt(i){let e=He(i);if(!mt.existsSync(e))return!1;try{let t=ue(i);return t.prepare(`
+      SELECT value FROM index_metadata
+      WHERE key = 'index_completed'
+    `).get()?.value==="true"?!0:t.prepare("SELECT COUNT(*) as count FROM files").get().count>0}catch(t){return K.debug({repoPath:i,error:t},"Error checking index status"),!1}}function ht(i,e){let t=ue(i);t.prepare(`
+    INSERT OR REPLACE INTO index_metadata (key, value, updated_at)
+    VALUES ('index_completed', 'true', unixepoch())
+  `).run(),t.prepare(`
+    INSERT OR REPLACE INTO index_metadata (key, value, updated_at)
+    VALUES ('last_indexed_at', ?, unixepoch())
+  `).run(Date.now().toString()),e&&t.prepare(`
+      INSERT OR REPLACE INTO index_metadata (key, value, updated_at)
+      VALUES ('last_indexed_commit', ?, unixepoch())
+    `).run(e),K.info({repoPath:i,commitSha:e},"Repository marked as indexed")}function Yt(i){try{return ue(i).prepare(`
+      SELECT value FROM index_metadata
+      WHERE key = 'last_indexed_commit'
+    `).get()?.value||null}catch(e){return K.debug({repoPath:i,error:e},"Error getting last indexed commit"),null}}function Kt(i){let e=Pe.get(i)||He(i),t=X.get(e);t&&(t.open&&(K.info({repoPath:i,dbPath:e},"Closing database connection"),t.close()),X.delete(e)),Pe.delete(i)}function Qt(){for(let[i,e]of X.entries())try{e.open&&(K.info({dbPath:i},"Closing database connection"),e.close())}catch(t){K.error({dbPath:i,err:t},"Error closing database execution")}X.clear()}process.on("exit",()=>Qt());var Vt=i=>{K.info({signal:i},"Received termination signal, closing databases"),Qt(),process.exit(0)};process.on("SIGINT",()=>Vt("SIGINT"));process.on("SIGTERM",()=>Vt("SIGTERM"));import q from"path";import me from"fs";import{loadConfig as ei,createMatchPath as ti}from"tsconfig-paths";import ee from"path";import Te from"fs";var te=class extends Error{constructor(t,n,s){super(n);this.code=t;this.cause=s;this.name="FileSystemError"}};function Zt(i){let 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",oi(t,n)):e==="package.json"&&(s="Project Manifest",li(t,n)),{configs:n,classification:s})}function si(i,e){let t=i.split(`
+`);for(let n of t){let s=n.trim();if(s.startsWith("FROM "))e.push({key:"base_image",value:s.substring(5).trim(),kind:"Image"});else if(s.startsWith("EXPOSE "))e.push({key:"port",value:s.substring(7).trim(),kind:"Port"});else if(s.startsWith("ENV ")){let r=s.substring(4).trim().split(/\s+|=/);if(r[0]){let o=r[0],c=r.slice(1).join("= ").trim()||"undefined",l="Env";(o.endsWith("_URI")||o.endsWith("_URL")||o.endsWith("_HOST"))&&(l="Service"),e.push({key:o,value:c,kind:l})}}}}function ri(i,e){try{let t=rn.load(i);if(!t||typeof t!="object")return;if(t.services&&typeof t.services=="object")for(let[s,r]of Object.entries(t.services)){if(!r||typeof r!="object")continue;let o=r;if(e.push({key:`service:${s}`,value:s,kind:"Service"}),o.image&&e.push({key:`service:${s}:image`,value:String(o.image),kind:"Image"}),Array.isArray(o.ports)&&o.ports.forEach(c=>{e.push({key:`service:${s}:port`,value:String(c),kind:"Port"})}),o.environment){if(Array.isArray(o.environment))o.environment.forEach(c=>{let[l,...a]=c.split("= ");l&&a.length>0&&e.push({key:`service:${s}:env:${l}`,value:a.join("= "),kind:"Env"})});else if(typeof o.environment=="object")for(let[c,l]of Object.entries(o.environment))e.push({key:`service:${s}:env:${c}`,value:String(l),kind:"Env"})}if(Array.isArray(o.depends_on))o.depends_on.forEach(c=>{e.push({key:`service:${s}:depends_on`,value:c,kind:"Dependency"})});else if(o.depends_on&&typeof o.depends_on=="object")for(let c of Object.keys(o.depends_on))e.push({key:`service:${s}:depends_on`,value:c,kind:"Dependency"})}let n=(s,r="")=>{if(!(!s||typeof s!="object"||Array.isArray(s)))for(let[o,c]of Object.entries(s)){let l=r?`${r}.${o}`:o;if(t.services&&(l.startsWith("services.")||l==="services")){c&&typeof c=="object"&&!Array.isArray(c)&&n(c,l);continue}if(c&&typeof c=="object"&&!Array.isArray(c))n(c,l);else{let a=String(c),p="Env";o.toLowerCase().includes("image")&&(p="Image"),o.toLowerCase().includes("port")&&(p="Port"),o.toLowerCase().includes("service")&&(p="Service"),(o.endsWith("_URI")||o.endsWith("_URL")||o.endsWith("_HOST"))&&(p="Service"),e.push({key:l,value:a.length>100?a.substring(0,97)+"...":a,kind:p})}}};n(t)}catch{let n=i.match(/^\s{2}([a-z0-9_-]+):/gm);n&&n.forEach(s=>{let r=s.trim().replace(" : ","");r!=="services"&&r!=="version"&&r!=="volumes"&&r!=="networks"&&e.push({key:"service",value:r,kind:"Service"})})}}function oi(i,e){let t=i.split(`
+`);for(let n of t){let s=n.trim();if(s&&!s.startsWith("#")){let r=s.split("=");if(r[0]){let o=r[0].trim(),c=r.slice(1).join("=");c=c.trim().replace(/^['"](.*)['"]$/,"$1");let l="Env";(o.endsWith("_URI")||o.endsWith("_URL")||o.endsWith("_HOST"))&&(l="Service"),e.push({key:o,value:c,kind:l})}}}}function ai(i,e){let t=[],n="Contract (Prisma) ",s=/^model\s+(\w+)/gm,r;for(;(r=s.exec(i))!==null;)t.push({key:"model",value:r[1],kind:"Database Model"});let o=/^enum\s+(\w+)/gm;for(;(r=o.exec(i))!==null;)t.push({key:"enum",value:r[1],kind:"Database Enum"});let c=/provider\s*=\s*"([^"]+)"/,l=i.match(c);return l&&t.push({key:"datasource_provider",value:l[1],kind:"Database Config"}),{classification:n,configs:t}}function ci(i,e){let t=[],n="Contract (GraphQL) ",s=/^(?:type|input|interface|enum)\s+(\w+)/gm,r;for(;(r=s.exec(i))!==null;){let o=r[0],c="GraphQL Type";o.startsWith("input")&&(c="GraphQL Input"),o.startsWith("interface")&&(c="GraphQL Interface"),o.startsWith("enum")&&(c="GraphQL Enum"),t.push({key:"type_definition",value:r[1],kind:c})}return{classification:n,configs:t}}function li(i,e){try{let t=JSON.parse(i);if(t.name&&e.push({key:"name",value:t.name,kind:"Service"}),t.description&&e.push({key:"description",value:t.description,kind:"Service"}),t.workspaces){let r=Array.isArray(t.workspaces)?t.workspaces.join("",""):JSON.stringify(t.workspaces);e.push({key:"workspaces",value:r,kind:"Env"})}if(t.scripts){let r=["start","dev","build","test","docker"];for(let o of Object.keys(t.scripts))r.some(c=>o.includes(c))&&e.push({key:`script:${o}`,value:t.scripts[o],kind:"Env"})}let n={...t.dependencies,...t.devDependencies},s=["react","vue","svelte","angular","next","nuxt","express","fastify","nestjs","remix","vite","webpack","tailwindcss","database"];for(let r of Object.keys(n))if(s.some(o=>r.includes(o))){let o=n[r].replace(/[\^~]/,"");e.push({key:`dep:${r}`,value:o,kind:"Service"})}}catch{}}function pi(i,e){let t=[],n="Monorepo (Lerna) ";try{let s=JSON.parse(i);t.push({key:"monorepo_type",value:"lerna",kind:"Monorepo"}),s.version&&t.push({key:"lerna_version",value:s.version,kind:"Monorepo"}),s.packages&&(Array.isArray(s.packages)?s.packages:[s.packages]).forEach(o=>{t.push({key:"package_glob",value:o,kind:"Monorepo"})}),s.npmClient&&t.push({key:"npm_client",value:s.npmClient,kind:"Monorepo"})}catch{}return{configs:t,classification:n}}function ui(i,e){let t=[],n="Monorepo (Turborepo) ";try{let s=JSON.parse(i);if(t.push({key:"monorepo_type",value:"turborepo",kind:"Monorepo"}),s.pipeline)for(let r of Object.keys(s.pipeline)){t.push({key:`pipeline:${r}`,value:r,kind:"Monorepo"});let o=s.pipeline[r];o.dependsOn&&t.push({key:`pipeline:${r}:depends_on`,value:o.dependsOn.join("",""),kind:"Dependency"})}if(s.tasks)for(let r of Object.keys(s.tasks))t.push({key:`task:${r}`,value:r,kind:"Monorepo"})}catch{}return{configs:t,classification:n}}function di(i,e){let t=[],n="Monorepo (pnpm) ";try{let s=rn.load(i);t.push({key:"monorepo_type",value:"pnpm",kind:"Monorepo"}),s&&s.packages&&(Array.isArray(s.packages)?s.packages:[s.packages]).forEach(o=>{t.push({key:"package_glob",value:o,kind:"Monorepo"})})}catch{}return{configs:t,classification:n}}import on from"fs";import mi from"path";import an from"js-yaml";var cn={ignore:[],include:[],maxDepth:10},fi=[{name:".liquid-shadow.yaml",parse:i=>an.load(i)??{}},{name:".liquid-shadow.yml",parse:i=>an.load(i)??{}},{name:".ls.json",parse:i=>JSON.parse(i)},{name:".liquid-shadow.json",parse:i=>JSON.parse(i)},{name:".ls.rc",parse:i=>JSON.parse(i)},{name:".liquid-shadow.rc",parse:i=>JSON.parse(i)}];function je(i){for(let{name:e,parse:t}of fi){let n=mi.join(i,e);if(on.existsSync(n))try{let s=on.readFileSync(n,"utf8"),r=t(s);return _.info({repoPath:i,configFile:e},"Loaded repository configuration"),{...cn,...r}}catch(s){_.error({repoPath:i,file:e,err:s},"Failed to parse configuration file")}}return cn}import hi from"path";var P=class{db;constructor(e){this.db=e}get database(){return this.db}all(e,...t){return this.db.prepare(e).all(...t)}get(e,...t){return this.db.prepare(e).get(...t)}run(e,...t){return this.db.prepare(e).run(...t).changes}insert(e,...t){return this.db.prepare(e).run(...t).lastInsertRowid}transaction(e){return this.db.transaction(e)()}};var Be=class extends P{findByPath(e){return this.get("SELECT * FROM files WHERE path = ?",e)}findAll(e){let t="SELECT * FROM files ORDER BY path ASC";return e&&(t+=` LIMIT ${e}`),this.all(t)}getAllPaths(){return this.all("SELECT path FROM files").map(t=>t.path)}findInSubPath(e,t){let n=hi.resolve(e,t),s=n.endsWith("/")?n:n+"/";return this.all(`
+      SELECT * FROM files 
+      WHERE (path LIKE ? OR path = ?)
+      ORDER BY path ASC
+    `,`${s}%`,n)}findWithEmbeddings(){return this.all("SELECT * FROM files WHERE embedding IS NOT NULL")}findFts(e,t=10){return this.all(`
+      SELECT files.*, files_fts.rank
+      FROM files_fts
+      JOIN files ON files.rowid = files_fts.rowid
+      WHERE files_fts MATCH ?
+      ORDER BY rank
+      LIMIT ?
+    `,e,t)}findByPathKeywords(e,t=10){let n=e.map(()=>"LOWER(path) LIKE ?").join(" OR ");return this.all(`
+      SELECT * FROM files 
+      WHERE ${n}
+      LIMIT ?
+    `,...e.map(s=>`%${s}%`),t)}getContent(e){return this.get("SELECT content FROM file_content WHERE file_path = ?",e)?.content}findContentByToken(e,t=10){return this.all(`
+          SELECT file_path 
+          FROM content_fts 
+          WHERE content_fts MATCH ? 
+            AND (file_path LIKE '%.ts' OR file_path LIKE '%.tsx' OR file_path LIKE '%.js' OR file_path LIKE '%.py' OR file_path LIKE '%.php')
+            AND file_path NOT LIKE '%/test/%'
+            AND file_path NOT LIKE '%.spec.%'
+          LIMIT ?
+        `,`"${e.replace(/[^a-zA-Z0-9_\/]/g," ")}"`,t).map(s=>s.file_path)}findSynapses(e){let t="SELECT * FROM event_synapses WHERE 1=1",n=[];if(e.type&&(t+=" AND type = ?",n.push(e.type)),e.name){let s=e.name;s.startsWith("/")&&(s=s.substring(1)),s.endsWith("/")&&(s=s.substring(0,s.length-1)),s.length>0&&(t+=" AND (name LIKE ? OR name LIKE ? OR name = ?)",n.push(`${s}%`),n.push(`%/${s}%`),n.push(e.name))}return e.direction&&(t+=" AND direction = ?",n.push(e.direction)),t+=` LIMIT ${e.limit||50}`,this.all(t,...n)}exists(e){return!!this.get("SELECT 1 FROM files WHERE path = ?",e)}update(e,t){let n=Object.keys(t);if(n.length===0)return;let s=n.map(o=>`${o} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE files SET ${s} WHERE path = ?`,...r)}getStats(){let e=this.get(`
+      SELECT 
+        COUNT(*) as total,
+        SUM(CASE WHEN summary IS NOT NULL AND summary != '' THEN 1 ELSE 0 END) as withSummary
+      FROM files
+    `);return{total:e?.total||0,withSummary:e?.withSummary||0}}getGravityMap(e=[],t){let n={},s=`
+      SELECT ws.file_path, m.name as mission_name, m.status
+      FROM working_set ws
+      JOIN missions m ON ws.mission_id = m.id
+      WHERE (
+        (m.status IN ('in-progress', 'verifying') ${t?"AND m.git_branch = ?":""})
+        OR m.id IN (${e.length>0?e.join(","):"-1"})
+      )
+      AND ws.file_path IS NOT NULL
+    `,r=[];t&&r.push(t);let o=this.all(s,...r);for(let a of o){n[a.file_path]||(n[a.file_path]={score:1,reasons:[]});let p=a.status==="in-progress"||a.status==="verifying"?1:.5;n[a.file_path].score+=p;let d=a.status==="in-progress"||a.status==="verifying"?"Working Set":"Lineage Bleed";n[a.file_path].reasons.push(`${d}: ${a.mission_name}`)}let c=Math.floor(Date.now()/1e3)-86400,l=this.all(`
+      SELECT file_path, type, mission_id
+      FROM intent_logs
+      WHERE (created_at > ? OR mission_id IN (${e.length>0?e.join(","):"-1"}))
+      AND file_path IS NOT NULL
+      ORDER BY created_at DESC
+      LIMIT 100
+    `,c);for(let a of l){n[a.file_path]||(n[a.file_path]={score:1,reasons:[]});let p=a.mission_id?e.includes(a.mission_id):!1,d=p?.1:.2;n[a.file_path].score<5&&(n[a.file_path].score+=d);let m=p?`Lineage Intent: ${a.type}`:`Recent Intent: ${a.type}`;!n[a.file_path].reasons.includes(m)&&n[a.file_path].reasons.length<5&&n[a.file_path].reasons.push(m)}return n}getCount(){return this.get("SELECT COUNT(*) as count FROM files")?.count||0}getTopDirectories(e,t=8){return this.all(`
+        SELECT 
+            SUBSTR(path, LENGTH(?) + 2, 
+                INSTR(SUBSTR(path, LENGTH(?) + 2), '/') - 1
+            ) as root,
+            COUNT(*) as total_files,
+            SUM(CASE 
+                WHEN path LIKE '%.ts' OR path LIKE '%.tsx' 
+                  OR path LIKE '%.js' OR path LIKE '%.jsx' 
+                  OR path LIKE '%.mjs' OR path LIKE '%.cjs' 
+                THEN 1 ELSE 0 
+            END) as ts_files
+        FROM files 
+        WHERE path LIKE ? || '/%/%'
+        GROUP BY root
+        ORDER BY total_files DESC
+        LIMIT ?
+    `,e,e,e,t)}hasFilesPattern(e){return!!this.get("SELECT 1 FROM files WHERE path LIKE ? LIMIT 1",e)}findPackageJsonChildren(e){return this.all(`
+        SELECT 
+            path,
+            SUBSTR(path, LENGTH(?) + 2) as relPath
+        FROM files 
+        WHERE path LIKE ? || '/%/package.json'
+    `,e,e)}deletePaths(e){if(e.length===0)return;let t=this.db.prepare("DELETE FROM files WHERE path = ?");this.db.transaction(s=>{for(let r of s)t.run(r)})(e)}updateMtime(e,t){this.run("UPDATE files SET mtime = ? WHERE path = ?",t,e)}batchSaveIndexResults(e,t,n,s){let r=this.db.prepare("DELETE FROM exports WHERE file_path = ?"),o=this.db.prepare("DELETE FROM imports WHERE file_path = ?"),c=this.db.prepare("DELETE FROM configs WHERE file_path = ?"),l=this.db.prepare("DELETE FROM file_content WHERE file_path = ?"),a=this.db.prepare("DELETE FROM event_synapses WHERE file_path = ?"),p=this.db.prepare("INSERT INTO exports (file_path, name, kind, signature, doc, start_line, end_line, classification, capabilities, parent_id, embedding) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)"),d=this.db.prepare("INSERT INTO imports (file_path, module_specifier, imported_symbols, resolved_path) VALUES (?, ?, ?, ?)"),m=this.db.prepare("INSERT INTO configs (file_path, key, value, kind) VALUES (?, ?, ?, ?)"),f=this.db.prepare("INSERT INTO file_content (file_path, content) VALUES (?, ?)"),g=this.db.prepare("INSERT INTO event_synapses (file_path, type, name, direction, line_number, code_snippet) VALUES (?, ?, ?, ?, ?, ?)"),E=this.db.prepare(`
+        INSERT INTO files (path, mtime, last_scanned_at, classification, summary, embedding, content_hash) 
+        VALUES (?, ?, ?, ?, ?, ?, ?)
+        ON CONFLICT(path) DO UPDATE SET
+            mtime=excluded.mtime,
+            last_scanned_at=excluded.last_scanned_at,
+            classification=excluded.classification,
+            summary=excluded.summary,
+            embedding=excluded.embedding,
+            content_hash=excluded.content_hash
+    `);this.db.transaction(u=>{for(let h of u){let{meta:b,exports:M,imports:C,configs:I,events:v,content:$,classification:N,summary:R,embedding:S}=h;r.run(b.path),o.run(b.path),c.run(b.path),l.run(b.path),a.run(b.path);let w=$?n($):null;if(E.run(b.path,b.mtime,Date.now(),N||"Unknown",R||"",S?JSON.stringify(S):null,w),M){let D=(j,Q,V)=>{for(let F of Q){let k=F.embedding?JSON.stringify(F.embedding):null,x=p.run(j,F.name,F.kind,F.signature,F.doc||"",F.line,F.endLine||F.line,F.classification||"Other",F.capabilities||"[]",V,k);F.members&&F.members.length>0&&D(j,F.members,x.lastInsertRowid)}};D(b.path,M,null)}if(C)for(let D of C){let j=s(D.module,b.path,t);d.run(b.path,D.module,D.name,j)}if(I)for(let D of I)m.run(b.path,D.key,D.value,D.kind);if($!==void 0&&f.run(b.path,$),v)for(let D of v)g.run(b.path,D.type,D.name,D.direction,D.line,D.snippet)}})(e)}getLatestScanTime(){return this.get("SELECT MAX(last_scanned_at) as t FROM files")?.t||null}};var qe=class extends P{findByNameAndFile(e,t){return this.all("SELECT * FROM exports WHERE file_path = ? AND name = ?",t,e)}findByNameGlobal(e){return this.all("SELECT * FROM exports WHERE name = ?",e)}findAtLine(e,t){return this.get(`
+      SELECT * FROM exports 
+      WHERE file_path = ? AND start_line <= ? AND end_line >= ?
+      ORDER BY (end_line - start_line) ASC -- Get innermost symbol
+      LIMIT 1
+    `,e,t,t)}findById(e){return this.get("SELECT * FROM exports WHERE id = ?",e)}findHydratedById(e){let t=this.findById(e);if(!t)return;let n=this.all(`
+      SELECT id, mission_id, type, content, created_at, confidence
+      FROM intent_logs
+      WHERE symbol_id = ?
+      ORDER BY created_at DESC
+      LIMIT 5
+    `,e),r=this.get("SELECT COUNT(*) as count FROM intent_logs WHERE symbol_id = ?",e)?.count||0,o=this.all(`
+      SELECT m.id, m.name, m.status
+      FROM missions m
+      JOIN working_set ws ON ws.mission_id = m.id
+      WHERE ws.symbol_id = ? 
+      AND m.status IN ('in-progress', 'planned', 'verifying')
+      GROUP BY m.id
+    `,e);return{...t,recent_intents:n,intent_log_count:r,active_missions:o}}findRoutesByCapability(e){return this.all(`
+          SELECT name, file_path, signature
+          FROM exports 
+          WHERE kind = 'HTTP Route' 
+            AND capabilities LIKE ?
+        `,`%${e}%`)}findRoutesByToken(e,t=5){return this.all(`
+      SELECT *
+      FROM exports
+      WHERE (kind = 'HTTP Route' OR classification = 'Service Boundary')
+      AND (name LIKE ? OR signature LIKE ?)
+      LIMIT ?
+      `,`%${e}%`,`%${e}%`,t)}findByFile(e){return this.all("SELECT * FROM exports WHERE file_path = ? ORDER BY start_line ASC",e)}findByFiles(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM exports WHERE file_path IN (${t}) ORDER BY file_path, start_line ASC`,...e)}findSiblings(e){return this.all(`
+        SELECT name, kind, signature, start_line, end_line, 
+               parent_id, id,
+               (SELECT name FROM exports WHERE id = e.parent_id) as parent_name
+        FROM exports e
+        WHERE file_path = ?
+        AND parent_id IS NULL
+        ORDER BY start_line ASC
+    `,e)}findByName(e,t=20){return this.all("SELECT * FROM exports WHERE name = ? LIMIT ?",e,t)}findClassByName(e){return this.get("SELECT * FROM exports WHERE name = ? AND kind = 'ClassDeclaration' LIMIT 1",e)}findDefinitionCandidates(e,t){let n=[e],s=`
+        SELECT e.id, e.name, e.kind, e.start_line, e.end_line, e.signature, e.doc, 
+               f.path as file_path, e.classification, e.capabilities,
+               p.name as parent_name, p.kind as parent_kind
+        FROM exports e
+        JOIN files f ON e.file_path = f.path
+        LEFT JOIN exports p ON e.parent_id = p.id
+        WHERE e.name = ?
+    `;return t&&(s+=" AND f.path = ?",n.push(t)),s+=`
+        ORDER BY 
+        CASE WHEN e.parent_id IS NULL THEN 0 ELSE 1 END,
+        CASE WHEN e.kind = 'ExportSpecifier' THEN 2 ELSE 0 END
+        LIMIT 10
+    `,this.all(s,...n)}findMemberCandidates(e,t,n){let s=[e,t],r=`
+        SELECT e.id, e.name, e.kind, e.start_line, e.end_line, e.signature, e.doc, 
+               f.path as file_path, e.classification, e.capabilities,
+               p.name as parent_name, p.kind as parent_kind
+        FROM exports e
+        JOIN files f ON e.file_path = f.path
+        LEFT JOIN exports p ON e.parent_id = p.id
+        WHERE p.name = ? AND e.name = ?
+    `;return n&&(r+=" AND f.path = ?",s.push(n)),r+=`
+        ORDER BY 
+        CASE WHEN e.parent_id IS NULL THEN 0 ELSE 1 END,
+        CASE WHEN e.kind = 'ExportSpecifier' THEN 2 ELSE 0 END
+        LIMIT 10
+    `,this.all(r,...s)}findPotentialParents(e){return this.all(`
+            SELECT name, kind, file_path 
+            FROM exports 
+            WHERE kind IN ('ClassDeclaration', 'ClassExpression', 'TsInterfaceDeclaration')
+            AND id IN (
+                SELECT rowid FROM content_fts WHERE content MATCH ?
+            )
+            LIMIT 3
+        `,`"${e}"`)}findFuzzyCandidates(e){let t=e.charAt(0).toLowerCase();return this.all(`
+            SELECT DISTINCT name FROM exports
+            WHERE parent_id IS NULL
+            AND (name LIKE ? OR name LIKE ? OR ABS(LENGTH(name) - LENGTH(?)) <= 5)
+            ORDER BY ABS(LENGTH(name) - LENGTH(?)) ASC
+            LIMIT 1000
+        `,t+"%","%"+t+"%",e,e)}findTopLevelByFile(e){return this.all(`
+      SELECT * FROM exports 
+      WHERE file_path = ? AND parent_id IS NULL 
+      ORDER BY start_line ASC
+    `,e)}findFts(e,t=20){return this.all(`
+      SELECT e.* 
+      FROM exports e
+      JOIN exports_fts ef ON e.id = ef.rowid
+      WHERE ef MATCH ?
+      LIMIT ?
+    `,e,t)}findByPartialName(e,t=20){return this.all(`
+      SELECT * FROM exports 
+      WHERE lower(name) LIKE ?
+      LIMIT ?
+    `,`%${e.toLowerCase()}%`,t)}getAllNames(e=5e3){return this.all("SELECT DISTINCT name FROM exports WHERE parent_id IS NULL LIMIT ?",e).map(n=>n.name)}countByFile(e){return this.get("SELECT COUNT(*) as count FROM exports WHERE file_path = ?",e)?.count||0}findDeadExports(e=50,t=!1){let n=t?"":"AND e.file_path NOT LIKE '%/test/%' AND e.file_path NOT LIKE '%/__tests__/%' AND e.file_path NOT LIKE '%.spec.%' AND e.file_path NOT LIKE '%.test.%'";return this.all(`
+        SELECT e.name, e.kind, e.file_path, e.start_line
+        FROM exports e
+        WHERE e.kind IN (
+          'FunctionDeclaration', 'ClassDeclaration',
+          'TsInterfaceDeclaration', 'TsTypeAliasDeclaration', 'TsEnumDeclaration',
+          'ArrowFunctionExpression', 'FunctionExpression'
+        )
+        AND e.parent_id IS NULL
+        ${n}
+        AND NOT EXISTS (SELECT 1 FROM imports i WHERE i.imported_symbols LIKE '%' || e.name || '%')
+        AND NOT EXISTS (SELECT 1 FROM imports i WHERE i.resolved_path = e.file_path AND i.imported_symbols LIKE '%*%')
+        ORDER BY e.file_path, e.start_line
+        LIMIT ?
+    `,e)}getGravityMap(e=[],t){let n={},s=`
+      SELECT ws.symbol_id, m.name as mission_name, m.status
+      FROM working_set ws
+      JOIN missions m ON ws.mission_id = m.id
+      WHERE (
+        (m.status IN ('in-progress', 'verifying') ${t?"AND m.git_branch = ?":""})
+        OR m.id IN (${e.length>0?e.join(","):"-1"})
+      )
+      AND ws.symbol_id IS NOT NULL
+    `,r=[];t&&r.push(t);let o=this.all(s,...r);for(let a of o){n[a.symbol_id]||(n[a.symbol_id]={score:1,reasons:[]});let p=a.status==="in-progress"||a.status==="verifying"?1:.5;n[a.symbol_id].score+=p;let d=a.status==="in-progress"||a.status==="verifying"?"Working Set":"Lineage Bleed";n[a.symbol_id].reasons.push(`${d}: ${a.mission_name}`)}let c=Math.floor(Date.now()/1e3)-86400,l=this.all(`
+      SELECT symbol_id, type, mission_id
+      FROM intent_logs
+      WHERE (created_at > ? OR mission_id IN (${e.length>0?e.join(","):"-1"}))
+      AND symbol_id IS NOT NULL
+      ORDER BY created_at DESC
+      LIMIT 200
+    `,c);for(let a of l){n[a.symbol_id]||(n[a.symbol_id]={score:1,reasons:[]});let p=a.mission_id?e.includes(a.mission_id):!1,d=p?.1:.2;n[a.symbol_id].score<5&&(n[a.symbol_id].score+=d);let m=p?`Lineage Intent: ${a.type}`:`Recent Intent: ${a.type}`;!n[a.symbol_id].reasons.includes(m)&&n[a.symbol_id].reasons.length<5&&n[a.symbol_id].reasons.push(m)}return n}getCount(){return this.get("SELECT COUNT(*) as count FROM exports")?.count||0}getKindDistribution(e=5){return this.all(`
+            SELECT kind, COUNT(*) as c 
+            FROM exports 
+            WHERE kind IS NOT NULL AND kind != ''
+            GROUP BY kind 
+            ORDER BY c DESC 
+            LIMIT ?
+        `,e)}getWithEmbeddingsCount(){return this.get("SELECT COUNT(*) as count FROM exports WHERE embedding IS NOT NULL")?.count||0}findByMethodName(e){return this.all(`
+      SELECT * FROM exports 
+      WHERE name = ? 
+         OR name LIKE ? 
+         OR name LIKE ?
+      LIMIT 10
+      `,e,`%.${e}`,`%::${e}`)}};var ln=`
+WITH RECURSIVE dependency_chain AS (
+    -- Base case: Direct dependents of the target symbol
+    -- Meaning: Files that import the file where the symbol is defined
+    SELECT 
+        i.file_path as consumer_path,
+        i.module_specifier,
+        i.imported_symbols,
+        f.path as source_path,
+        1 as depth,
+        i.file_path || '<-' || f.path as path_chain
+    FROM imports i
+    JOIN files f ON i.resolved_path = f.path
+    WHERE f.path = ? -- The file where our changed symbol lives
+      AND (
+          -- Exact symbol match or wildcard import
+          i.imported_symbols LIKE ? 
+          OR i.imported_symbols = '*' 
+          OR i.imported_symbols = 'default'
+          OR i.imported_symbols = ''
+      )
+
+    UNION ALL
+
+    -- Recursive step: Find consumers of the consumers
+    SELECT 
+        i.file_path as consumer_path,
+        i.module_specifier,
+        i.imported_symbols,
+        dc.consumer_path as source_path,
+        dc.depth + 1,
+        i.file_path || '<-' || dc.path_chain
+    FROM imports i
+    JOIN dependency_chain dc ON i.resolved_path = dc.consumer_path
+    WHERE dc.depth < ? -- Max depth limit
+      AND instr(dc.path_chain, i.file_path) = 0 -- Cycle detection: ensure we haven't visited this file in this chain
+)
+SELECT DISTINCT 
+    dc.consumer_path,
+    dc.depth,
+    dc.source_path,
+    dc.imported_symbols
+FROM dependency_chain dc
+ORDER BY dc.depth, dc.consumer_path;
+`;var Ge=class extends P{findByFile(e){return this.all("SELECT * FROM imports WHERE file_path = ?",e)}findByFiles(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM imports WHERE file_path IN (${t}) ORDER BY file_path`,...e)}getAllResolved(){return this.all(`
+            SELECT * FROM imports 
+            WHERE resolved_path IS NOT NULL AND resolved_path != ''
+        `)}findDependents(e){return this.all("SELECT * FROM imports WHERE resolved_path = ?",e)}countByFile(e){return this.get("SELECT COUNT(*) as count FROM imports WHERE file_path = ?",e)?.count||0}countDependents(e){return this.get("SELECT COUNT(*) as count FROM imports WHERE resolved_path = ?",e)?.count||0}getImportsForFile(e){return this.all("SELECT module_specifier, imported_symbols, resolved_path FROM imports WHERE file_path = ?",e)}findImportSource(e,t){return this.get(`
+            SELECT *
+            FROM imports 
+            WHERE file_path = ? 
+            AND (imported_symbols LIKE ? OR imported_symbols = '*')
+            LIMIT 1
+      `,e,`%${t}%`)}findProxies(e){return this.all(`
+            SELECT i.file_path
+            FROM imports i
+            JOIN exports e ON i.file_path = e.file_path
+            WHERE i.resolved_path = ?
+            AND (e.kind = 'ExportAllDeclaration' OR e.kind = 'ExportMapping')
+        `,e)}findVerifiedDependents(e,t){if(e.length===0)return[];let n=e.map(()=>"?").join(", ");return this.all(`
+        SELECT i.file_path, i.imported_symbols, f.classification, f.summary
+        FROM imports i
+        JOIN files f ON i.file_path = f.path
+        WHERE i.resolved_path IN (${n})
+        AND (i.imported_symbols LIKE ? OR i.imported_symbols = '' OR i.imported_symbols = '*')
+        LIMIT 10
+    `,...e,`%${t}%`)}countVerifiedDependents(e,t){if(e.length===0)return 0;let n=e.map(()=>"?").join(", ");return this.get(`
+            SELECT COUNT(*) as count FROM imports 
+            WHERE resolved_path IN (${n})
+            AND (imported_symbols LIKE ? OR imported_symbols = '' OR imported_symbols = '*')
+        `,...e,`%${t}%`)?.count||0}findImpactDependents(e,t,n){return this.all(ln,e,t,n)}getCount(){return this.get("SELECT COUNT(*) as count FROM imports")?.count||0}};var ze=class extends P{findById(e){return this.get("SELECT * FROM missions WHERE id = ?",e)}findByIds(e){if(e.length===0)return[];let t=e.map(()=>"?").join(", ");return this.all(`SELECT * FROM missions WHERE id IN (${t})`,...e)}findActive(e){let t="SELECT * FROM missions WHERE status IN ('in-progress', 'planned', 'verifying')",n=[];return e&&(t+=" AND git_branch = ?",n.push(e)),t+=` ORDER BY 
+        CASE WHEN status = 'in-progress' THEN 0 WHEN status = 'verifying' THEN 1 ELSE 2 END, 
+        created_at ASC`,this.all(t,...n)}findAll(e){let t="SELECT * FROM missions",n=[];return e&&(t+=" WHERE status = ?",n.push(e)),t+=` ORDER BY 
+        CASE WHEN status = 'in-progress' THEN 0 WHEN status = 'verifying' THEN 1 ELSE 2 END, 
+        created_at ASC`,this.all(t,...n)}findRecentCompleted(e=3){return this.all(`
+      SELECT * FROM missions 
+      WHERE status = 'completed' 
+      ORDER BY updated_at DESC, id DESC 
+      LIMIT ?
+    `,e)}create(e){return this.insert(`
+      INSERT INTO missions (name, goal, strategy_graph, status, git_branch, commit_sha, parent_id, verification_context, outcome_contract)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)
+    `,e.name,e.goal,e.strategy_graph,e.status,e.git_branch,e.commit_sha,e.parent_id,e.verification_context,e.outcome_contract)}addArtifact(e,t,n,s){this.run("INSERT INTO mission_artifacts (mission_id, type, identifier, metadata) VALUES (?, ?, ?, ?)",e,t,n,s?JSON.stringify(s):null)}getArtifacts(e){return this.all("SELECT * FROM mission_artifacts WHERE mission_id = ?",e)}update(e,t){let n=Object.keys(t);if(n.length===0)return;let s=n.map(o=>`${o} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE missions SET ${s}, updated_at = unixepoch() WHERE id = ?`,...r)}updateStatus(e,t,n){n?this.run("UPDATE missions SET status = ?, updated_at = unixepoch(), commit_sha = ? WHERE id = ?",t,n,e):this.run("UPDATE missions SET status = ?, updated_at = unixepoch() WHERE id = ?",t,e)}getWorkingSet(e){return this.all("SELECT file_path, type FROM working_set WHERE mission_id = ?",e)}clearWorkingSet(e){this.run("DELETE FROM working_set WHERE mission_id = ?",e)}addToWorkingSet(e,t,n="file"){this.run("INSERT OR IGNORE INTO files (path, mtime, last_scanned_at) VALUES (?, unixepoch(), unixepoch())",t),this.run("INSERT INTO working_set (mission_id, file_path, type) VALUES (?, ?, ?)",e,t,n)}findColdMissions(e,t=10){return this.all(`
+      SELECT m.id, COUNT(il.id) as log_count
+      FROM missions m
+      LEFT JOIN intent_logs il ON il.mission_id = m.id
+      WHERE m.updated_at < ?
+      AND m.status != 'distilled'
+      GROUP BY m.id
+      HAVING log_count > ?
+    `,e,t).map(s=>s.id)}getStats(){let e=this.get(`
+      SELECT 
+        COUNT(*) as total,
+        SUM(CASE WHEN status='completed' THEN 1 ELSE 0 END) as completed,
+        SUM(CASE WHEN status IN ('in-progress', 'planned', 'verifying') THEN 1 ELSE 0 END) as active
+      FROM missions
+    `);return{total:e?.total||0,completed:e?.completed||0,active:e?.active||0}}getAnalytics(){let e=this.getStats(),t=e.total>0?Math.round(e.completed/e.total*100):0,n=this.get(`
+      SELECT AVG(updated_at - created_at) AS avg_duration
+      FROM missions
+      WHERE status = 'completed' AND updated_at > created_at
+    `),s=n?.avg_duration!=null?Math.round(n.avg_duration):null,r=Math.floor(Date.now()/1e3)-168*3600,o=Math.floor(Date.now()/1e3)-720*3600,c=this.get("SELECT COUNT(*) AS n FROM missions WHERE status = 'completed' AND updated_at >= ?",r),l=this.get("SELECT COUNT(*) AS n FROM missions WHERE status = 'completed' AND updated_at >= ?",o),a=c?.n??0,p=l?.n??0,d=`${a} completed in last 7 days, ${p} in last 30 days.`;if(s!=null){let m=Math.round(s/60);d+=` Avg mission duration: ${m} min.`}return{completionRate:t,averageDurationSeconds:s,completedLast7Days:a,completedLast30Days:p,velocityNote:d}}suspendByBranch(e){this.run(`UPDATE missions 
+       SET status = 'suspended', updated_at = unixepoch() 
+       WHERE git_branch = ? AND status IN ('in-progress', 'planned', 'verifying')`,e)}resumeByBranch(e){this.run(`UPDATE missions 
+       SET status = 'in-progress', updated_at = unixepoch() 
+       WHERE git_branch = ? AND status = 'suspended'`,e)}findMergedMissions(e,t){if(t.length===0)return[];let n=t.filter(r=>r!==e);if(n.length===0)return[];let s=n.map(()=>"?").join(",");return this.all(`SELECT * FROM missions 
+       WHERE status IN ('in-progress', 'planned', 'verifying', 'suspended')
+       AND git_branch IN (${s})`,...n)}findByCommitShas(e){if(e.length===0)return[];let t=e.map(()=>"?").join(",");return this.all(`SELECT * FROM missions WHERE commit_sha IN (${t})`,...e)}findByParentId(e){return this.all("SELECT * FROM missions WHERE parent_id = ?",e)}hasChildren(e){return!!this.get("SELECT 1 FROM missions WHERE parent_id = ? LIMIT 1",e)}hasNoSteps(e){if(!e.strategy_graph)return!0;try{let t=JSON.parse(e.strategy_graph),n=t?.steps??t;return!Array.isArray(n)||n.length===0}catch{return!0}}findParentOnlyIds(e){return e.filter(t=>t.parent_id!=null||!this.hasChildren(t.id)?!1:this.hasNoSteps(t)).map(t=>t.id)}createLink(e,t,n,s,r){this.db.exec(`
+            CREATE TABLE IF NOT EXISTS cross_repo_links (
+                id INTEGER PRIMARY KEY AUTOINCREMENT,
+                mission_id INTEGER NOT NULL,
+                linked_repo_path TEXT NOT NULL,
+                linked_mission_id INTEGER NOT NULL,
+                relationship TEXT,
+                direction TEXT,
+                created_at REAL DEFAULT (unixepoch()),
+                FOREIGN KEY(mission_id) REFERENCES missions(id) ON DELETE CASCADE
+            );
+            CREATE INDEX IF NOT EXISTS idx_cross_repo_mission ON cross_repo_links(mission_id);
+    `),this.run(`
+      INSERT INTO cross_repo_links (mission_id, linked_repo_path, linked_mission_id, relationship, direction)
+      VALUES (?, ?, ?, ?, ?)
+    `,e,t,n,s,r)}getLinks(e){try{return this.all(`
+        SELECT linked_repo_path, linked_mission_id, relationship, direction
+        FROM cross_repo_links
+        WHERE mission_id = ?
+      `,e)}catch{return[]}}findLastMission(){return this.get("SELECT * FROM missions ORDER BY updated_at DESC, id DESC LIMIT 1")}findActiveByPriority(){return this.get("SELECT * FROM missions WHERE status IN ('in-progress', 'active', 'verifying') ORDER BY CASE WHEN status = 'in-progress' THEN 0 ELSE 1 END, created_at ASC LIMIT 1")}};var Je=class extends P{findByMission(e,t=50){return this.all(`
+      SELECT * FROM intent_logs 
+      WHERE mission_id = ? 
+      ORDER BY created_at DESC 
+      LIMIT ?
+    `,e,t)}findRecentDecisionActivity(e=10){return this.all(`
+      SELECT * FROM intent_logs 
+      WHERE type IN ('decision', 'system', 'fix', 'heritage', 'adr')
+      ORDER BY created_at DESC 
+      LIMIT ?
+    `,e)}create(e){return this.insert(`
+      INSERT INTO intent_logs (mission_id, symbol_id, file_path, type, content, confidence, symbol_name, signature, commit_sha)
+      VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)
+    `,e.mission_id,e.symbol_id,e.file_path,e.type,e.content,e.confidence,e.symbol_name,e.signature,e.commit_sha)}delete(e){this.run("DELETE FROM intent_logs WHERE id = ?",e)}update(e,t){let n=Object.keys(t);if(n.length===0)return;let s=n.map(o=>`${o} = ?`).join(", "),r=Object.values(t);r.push(e),this.run(`UPDATE intent_logs SET ${s} WHERE id = ?`,...r)}findRepairableOrphans(){return this.all(`
+      SELECT id, file_path, symbol_name, signature 
+      FROM intent_logs 
+      WHERE symbol_id IS NULL AND symbol_name IS NOT NULL
+    `)}findOrphans(){return this.all(`
+      SELECT il.id, il.symbol_id, il.file_path, il.symbol_name
+      FROM intent_logs il
+      WHERE (il.symbol_id IS NOT NULL AND NOT EXISTS (SELECT 1 FROM exports e WHERE e.id = il.symbol_id))
+         OR (il.symbol_id IS NULL AND il.type != 'lapsed' AND il.type != 'system' AND il.type != 'adr')
+    `)}findLogsForMissingFiles(){return this.all(`
+      SELECT il.id
+      FROM intent_logs il
+      WHERE il.file_path IS NOT NULL
+      AND NOT EXISTS (
+        SELECT 1 FROM files f WHERE f.path = il.file_path
+      )
+    `)}markAsLapsed(e){this.run(`
+      UPDATE intent_logs 
+      SET symbol_id = NULL, 
+          type = 'lapsed',
+          content = 'Lapsed: ' || content
+      WHERE id = ?
+    `,e)}importHeritage(e,t,n,s){this.run(`
+      INSERT INTO intent_logs (type, content, commit_sha, created_at, confidence, mission_id)
+      VALUES ('heritage', ?, ?, ?, ?, 0)
+    `,e,t,n,s)}countByType(e){return this.get("SELECT COUNT(*) as count FROM intent_logs WHERE type = ?",e)?.count||0}};var Ye=class extends P{findByKey(e,t=20){return this.all(`
+      SELECT file_path, key, value, kind
+      FROM configs
+      WHERE key LIKE ? OR value LIKE ?
+      LIMIT ?
+      `,`%${e}%`,`%${e}%`,t)}findByKind(e,t=50){let n="SELECT key, value, kind, file_path FROM configs",s=[];return e&&(n+=" WHERE kind = ?",s.push(e)),n+=" LIMIT ?",s.push(t),this.all(n,...s)}findEnvValue(e){return this.get("SELECT value FROM configs WHERE key LIKE ? OR key = ? LIMIT 1",`%:env:${e}`,e)?.value}countByKind(e){return this.get("SELECT COUNT(*) as count FROM configs WHERE kind = ?",e)?.count||0}getAll(){return this.all("SELECT key, value, kind, file_path FROM configs")}};var Ke=class extends P{search(e,t=10){return this.all(`
+      SELECT file_path, snippet(content_fts, 1, '<b>', '</b>', '...', 20) as snippet
+      FROM content_fts
+      WHERE content_fts MATCH ?
+      LIMIT ?
+      `,e,t)}};var pn=500,Qe=class extends P{record(e,t,n=null){this.run("INSERT INTO search_history (query, mode, branch) VALUES (?, ?, ?)",e,t,n),this.pruneIfNeeded()}findRecent(e=20){return this.all("SELECT id, query, mode, branch, created_at FROM search_history ORDER BY created_at DESC LIMIT ?",e)}findRecentByQueryPrefix(e,t=10){return e.trim()?this.all(`SELECT id, query, mode, branch, created_at FROM search_history
+       WHERE query LIKE ? ORDER BY created_at DESC LIMIT ?`,`${e}%`,t):this.findRecent(t)}pruneIfNeeded(){(this.get("SELECT COUNT(*) as count FROM search_history")?.count??0)<=pn||this.run(`DELETE FROM search_history WHERE id NOT IN (
+        SELECT id FROM search_history ORDER BY created_at DESC LIMIT ?
+      )`,pn)}};var Ve=class extends P{getSection(e){return this.get("SELECT section, data, updated_at FROM hologram_snapshot WHERE section = ?",e)}getAllSections(){return this.all("SELECT section, data, updated_at FROM hologram_snapshot ORDER BY section")}upsertSection(e,t){this.run(`
+      INSERT INTO hologram_snapshot (section, data, updated_at)
+      VALUES (?, ?, unixepoch())
+      ON CONFLICT(section) DO UPDATE SET
+        data = excluded.data,
+        updated_at = excluded.updated_at
+    `,e,t)}deleteSection(e){this.run("DELETE FROM hologram_snapshot WHERE section = ?",e)}deleteAll(){this.run("DELETE FROM hologram_snapshot")}hasSection(e){return(this.get("SELECT COUNT(*) as count FROM hologram_snapshot WHERE section = ?",e)?.count??0)>0}};var ie=class{static repositoryCache=new Map;static getInstance(e){let t=this.repositoryCache.get(e);if(t){let r=ue(e),o=t.files?.database,c=!t.intentLogs||!t.searchHistory||!t.missions||!t.hologram;if(o===r&&r.open&&!c)return t;this.repositoryCache.delete(e)}let n=ue(e),s={files:new Be(n),exports:new qe(n),imports:new Ge(n),missions:new ze(n),intentLogs:new Je(n),configs:new Ye(n),content:new Ke(n),searchHistory:new Qe(n),hologram:new Ve(n)};return this.repositoryCache.set(e,s),s}static closeInstance(e){this.repositoryCache.delete(e),Kt(e)}static clearCache(e){this.repositoryCache.delete(e)}};import{Worker as gi}from"node:worker_threads";import{cpus as yi}from"node:os";import{fileURLToPath as Ei}from"node:url";import{dirname as bi,join as un}from"node:path";import{existsSync as dn}from"node:fs";var fn=Ei(import.meta.url),mn=bi(fn);function _i(){if(fn.endsWith(".ts")){let e=un(mn,"worker.ts");if(dn(e))return e}let i=un(mn,"worker.js");return dn(i)?i:Ne("dist/logic/domain/embeddings/worker.js")}var Se=class{workers=[];taskQueue=[];pendingTasks=new Map;taskIdCounter=0;initialized=!1;initPromise;shutdownRequested=!1;numWorkers;cacheDir;initTimeout;constructor(e={}){this.numWorkers=e.numWorkers??Math.max(1,yi().length-1),this.cacheDir=e.cacheDir??"./.cache",this.initTimeout=e.initTimeout??6e4}async initialize(){if(!this.initialized)return this.initPromise?this.initPromise:(this.initPromise=this._doInitialize(),this.initPromise)}async _doInitialize(){let e;try{_.info({numWorkers:this.numWorkers},"Initializing embedding worker pool");let t=new Promise((n,s)=>{e=setTimeout(()=>s(new Error(`Worker pool initialization timed out after ${this.initTimeout}ms`)),this.initTimeout)});if(await Promise.race([this._initializeWorkers(),t]),e&&clearTimeout(e),this.shutdownRequested){this.initialized=!1,this.initPromise=void 0,_.debug("Initialization completed but shutdown was requested");return}this.initialized=!0,_.info({numWorkers:this.workers.length},"Embedding worker pool ready")}catch(t){throw e&&clearTimeout(e),this.initPromise=void 0,this.initialized=!1,await this.shutdown(),t}}async _initializeWorkers(){let e=_i();_.debug({workerPath:e},"Resolved worker path");for(let t=0;t<this.numWorkers;t++)await this.createWorker(e,t),await new Promise(n=>setTimeout(n,50))}async createWorker(e,t){return new Promise((n,s)=>{let r=setTimeout(()=>{s(new Error(`Worker ${t} initialization timed out`))},this.initTimeout),o=new gi(e,{workerData:{cacheDir:this.cacheDir},execArgv:process.execArgv}),c={worker:o,busy:!1,currentTaskId:null};o.on("message",l=>{if(l.type==="ready"){if(clearTimeout(r),this.shutdownRequested){_.debug({workerIndex:t},"Worker ready but shutdown requested, terminating"),o.terminate().catch(()=>{}),n();return}this.workers.push(c),_.debug({workerIndex:t},"Worker ready"),n()}else l.type==="result"&&l.id?this.handleTaskComplete(c,l.id,l.embeddings||[]):l.type==="error"&&l.id&&this.handleTaskError(c,l.id,new Error(l.error||"Unknown error"))}),o.on("error",l=>{if(clearTimeout(r),_.error({err:l,workerIndex:t},"Worker error"),c.currentTaskId&&this.handleTaskError(c,c.currentTaskId,l),!this.initialized){s(l);return}let a=this.workers.indexOf(c);a!==-1&&this.workers.splice(a,1),!this.shutdownRequested&&this.initialized&&this.createWorker(e,t).catch(p=>{_.error({err:p},"Failed to replace crashed worker")})}),o.on("exit",l=>{l!==0&&!this.shutdownRequested&&_.warn({workerIndex:t,code:l},"Worker exited unexpectedly")})})}handleTaskComplete(e,t,n){let s=this.pendingTasks.get(t);s&&(this.pendingTasks.delete(t),s.resolve(n)),e.busy=!1,e.currentTaskId=null,this.processQueue()}handleTaskError(e,t,n){let s=this.pendingTasks.get(t);s&&(this.pendingTasks.delete(t),s.reject(n)),e.busy=!1,e.currentTaskId=null,this.processQueue()}processQueue(){if(this.taskQueue.length===0)return;let e=this.workers.find(n=>!n.busy);if(!e)return;let t=this.taskQueue.shift();t&&(e.busy=!0,e.currentTaskId=t.id,this.pendingTasks.set(t.id,t),e.worker.postMessage({type:"embed",id:t.id,texts:t.texts}))}async generateEmbeddings(e,t=32,n){if(this.initialized||await this.initialize(),e.length===0)return[];let s=[];for(let a=0;a<e.length;a+=t)s.push(e.slice(a,a+t));let r=new Array(s.length),o=0,c=s.map((a,p)=>new Promise((d,m)=>{let g={id:`task_${++this.taskIdCounter}`,texts:a,resolve:E=>{if(r[p]=E,o++,n){let y=Math.min(o*t,e.length);n(y,e.length)}d()},reject:E=>{if(r[p]=new Array(a.length).fill(null),o++,_.warn({err:E,chunkIndex:p},"Chunk embedding failed"),n){let y=Math.min(o*t,e.length);n(y,e.length)}d()}};this.taskQueue.push(g),this.processQueue()}));await Promise.all(c);let l=[];for(let a of r)l.push(...a);return _.info({total:e.length,successful:l.filter(a=>a!==null).length,workers:this.workers.length},"Parallel embedding generation complete"),l}get workerCount(){return this.workers.length}get busyWorkers(){return this.workers.filter(e=>e.busy).length}get queueSize(){return this.taskQueue.length}get isInitialized(){return this.initialized}async shutdown(){if(this.shutdownRequested=!0,this.initPromise)try{await this.initPromise}catch{}if(!this.initialized&&this.workers.length===0){this.shutdownRequested=!1,this.initPromise=void 0;return}_.info({numWorkers:this.workers.length},"Shutting down embedding worker pool");let e=this.workers.map(t=>new Promise(n=>{t.worker.postMessage({type:"shutdown"}),t.worker.once("exit",()=>n()),setTimeout(()=>{t.worker.terminate().then(()=>n())},5e3)}));await Promise.all(e),this.workers=[],this.taskQueue=[],this.pendingTasks.clear(),this.initialized=!1,this.shutdownRequested=!1,_.info("Embedding worker pool shutdown complete")}},fe=null;function Ze(i){return fe||(fe=new Se(i)),fe}async function hn(){fe&&(await fe.shutdown(),fe=null)}var xe=null;async function Ri(){return xe||(xe=await import("@xenova/transformers"),xe.env.cacheDir="./.cache",xe.env.allowLocalModels=!1),xe}var gn=128,bt=!1;function Xe(i){bt=i,_.info({useWorkerThreads:i},"Worker thread mode updated")}var yt=null;async function yn(){return yt||(yt=(async()=>{_.info("Loading embedding model (all-MiniLM-L6-v2)...");let{pipeline:i}=await Ri();return await i("feature-extraction","Xenova/all-MiniLM-L6-v2")})()),yt}async function Ti(i){try{let t=await(await yn())(i,{pooling:"mean",normalize:!0});return Array.from(t.data)}catch(e){return _.error({err:e},"Failed to generate embedding"),null}}async function _t(i,e=gn,t){return i.length===0?[]:bt?Ze().generateEmbeddings(i,e,t):En(i,e,t)}async function En(i,e,t){let n=new Array(i.length).fill(null),s=await yn();for(let r=0;r<i.length;r+=e){let o=Math.min(r+e,i.length),c=i.slice(r,o);try{let l=await s(c,{pooling:"mean",normalize:!0}),[a,p]=l.dims;for(let d=0;d<a;d++){let m=d*p,f=m+p;n[r+d]=Array.from(l.data.slice(m,f))}}catch(l){_.error({err:l,batchStart:r,batchEnd:o},"Single-threaded batch embedding failed, falling back to sequential for this chunk");for(let a=0;a<c.length;a++)try{let p=c[a];if(!p||p.trim().length===0)continue;let d=await s(p,{pooling:"mean",normalize:!0});n[r+a]=Array.from(d.data)}catch{n[r+a]=null}}t&&t(o,i.length)}return _.debug({total:i.length,successful:n.filter(r=>r!==null).length},"Batch embedding complete"),n}function Si(i,e){let t=0,n=0,s=0;for(let r=0;r<i.length;r++)t+=i[r]*e[r],n+=i[r]*i[r],s+=e[r]*e[r];return t/(Math.sqrt(n)*Math.sqrt(s))}var Et=class{queue=[];processing=!1;results=new Map;enqueue(e){this.queue.push(e),this.queue.sort((t,n)=>n.priority-t.priority)}enqueueMany(e){this.queue.push(...e),this.queue.sort((t,n)=>n.priority-t.priority)}get size(){return this.queue.length}get isProcessing(){return this.processing}getResult(e){return this.results.get(e)}async processQueue(e=gn,t){if(this.processing)return _.warn("Queue processing already in progress"),this.results;this.processing=!0;let n=this.queue.length;try{bt?await this.processQueueParallel(e,n,t):await this.processQueueSequential(e,n,t)}finally{this.processing=!1}return this.results}async processQueueSequential(e,t,n){for(;this.queue.length>0;){let s=this.queue.splice(0,e),r=s.map(c=>c.text),o=await En(r,r.length);if(s.forEach((c,l)=>{this.results.set(c.id,o[l])}),n){let c=t-this.queue.length;n(c,t)}}}async processQueueParallel(e,t,n){let s=this.queue.splice(0),r=s.map(l=>l.text),c=await Ze().generateEmbeddings(r,e,(l,a)=>{n&&n(l,a)});s.forEach((l,a)=>{this.results.set(l.id,c[a])})}clear(){this.queue=[],this.results.clear()}};import{execSync as Rt}from"child_process";import bn from"path";import _n from"fs";function Ie(i){try{return _n.existsSync(bn.join(i,".git"))?Rt("git rev-parse HEAD",{cwd:i,stdio:["ignore","pipe","ignore"],encoding:"utf8"}).trim():null}catch{return null}}function Rn(i,e){try{if(!_n.existsSync(bn.join(i,".git")))return!0;let t=Ie(i);return!t||e&&e!==t&&Rt(`git diff --name-only ${e} ${t}`,{cwd:i,stdio:["ignore","pipe","ignore"],encoding:"utf8"}).trim()?!0:Rt("git status --porcelain",{cwd:i,stdio:["ignore","pipe","ignore"],encoding:"utf8"}).trim().length>0}catch{return!0}}import{execSync as Tn}from"child_process";var le=_.child({module:"nano-repair"}),et=class{intentLogs;exports;missions;repoPath;constructor(e){let{intentLogs:t,exports:n,missions:s}=ie.getInstance(e);this.intentLogs=t,this.exports=n,this.missions=s,this.repoPath=e}detectAndRepairShifts(){let e=this.intentLogs.findRepairableOrphans();if(e.length===0)return{repaired:0,failed:0};le.info({count:e.length},"Detected orphaned intent logs. Attempting recovery...");let t=0,n=0;for(let s of e){let r=this.exports.findByNameAndFile(s.symbol_name,s.file_path);if(r.length>0){let c=r.find(l=>l.signature===s.signature)||r[0];this.intentLogs.update(s.id,{symbol_id:c.id}),le.info({logId:s.id,symbol:s.symbol_name},"Relinked symbol in same file"),t++;continue}let o=this.exports.findByNameGlobal(s.symbol_name);if(o.length>0){let c=o.filter(l=>l.file_path!==s.file_path);if(c.length>0){let l=c.find(a=>a.signature===s.signature)||c[0];this.intentLogs.update(s.id,{symbol_id:l.id,file_path:l.file_path}),le.info({logId:s.id,symbol:s.symbol_name,oldPath:s.file_path,newPath:l.file_path},"Detected Nano-Repair Shift (file move)"),t++;continue}}n++}return t>0&&le.info({repaired:t,failed:n},"Nano-Repair recovery complete"),{repaired:t,failed:n}}syncLifecycle(){let e="HEAD";try{e=Tn("git rev-parse --abbrev-ref HEAD",{cwd:this.repoPath,encoding:"utf-8",stdio:["ignore","pipe","ignore"]}).trim()}catch{return{suspended:0,resumed:0,completed:0}}if(!e)return{suspended:0,resumed:0,completed:0};let t=this.missions.findActive(),n=0;for(let o of t)o.git_branch&&o.git_branch!==e&&(this.missions.updateStatus(o.id,"suspended"),le.info({missionId:o.id,branch:o.git_branch,current:e},"Context Pivot: Suspended mission"),n++);this.missions.resumeByBranch(e);let s=[];try{s=Tn(`git branch --merged "${e}"`,{cwd:this.repoPath,encoding:"utf-8",stdio:["ignore","pipe","ignore"]}).split(`
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Map(m.map(u=>[u.path,u.mtime])),g=a.filter(u=>!f.has(u.path)).map(u=>u.path),E=a.length===0,y=[];if(t||E)y.push(...m);else{let u=m.filter(C=>{let I=p.get(C.path);return!I||I.mtime!==C.mtime}),h=Sn(l*4),b=u.map(C=>h(async()=>{let I=p.get(C.path);if(!I||!I.hash)return C;try{let v=await Tt.promises.readFile(C.path,"utf8");return zt(v,I.hash)?C:(r.files.updateMtime(C.path,C.mtime),null)}catch{return null}})),M=await Promise.all(b);y.push(...M.filter(C=>C!==null))}if(g.length===0&&y.length===0){if(ut(),E){let u=Ie(i);ht(i,u||void 0)}return o}if(E?_.info({totalFiles:m.length},"Starting initial repository indexing..."):_.info({toDelete:g.length,toProcess:y.length},"Syncing repository updates..."),g.length>0&&r.files.deletePaths(g),y.length>0){Bt(),n?Xe(!0):Xe(!1);let u=Sn(l),h=0,b=y.length,M=y.map(N=>u(async()=>{try{let R=xi.basename(N.path);if(/\.(ts|tsx|php|py|go|js|jsx|mjs|cjs)$/.test(R)){let w=await lt(N.path),D=Tt.readFileSync(N.path,"utf8");return h++,(h%50===0||h===b)&&_.info({completed:h,total:b},"Parsing files..."),s?.({phase:"parse",current:h,total:b,message:`Parsing ${R}`}),{meta:N,...w,content:D,embedding:null,kind:"code"}}else{let w=sn(N.path),D=Tt.readFileSync(N.path,"utf8");return h++,(h%50===0||h===b)&&_.info({completed:h,total:b},"Parsing configs..."),s?.({phase:"parse",current:h,total:b,message:`Parsing config ${R}`}),{meta:N,...w,content:D,embedding:null,kind:"config"}}}catch(R){return h++,_.error({path:N.path,error:R},"Failed to parse file"),{meta:N,exports:[],imports:[],content:"",kind:"error"}}}));_.info({total:b},"Phase 1: Parsing all files...");let C=Date.now(),I=(await Promise.all(M)).filter(Boolean),v=Date.now()-C;if(Fe("parse",v),_.info({count:I.length,time:`${(v/1e3).toFixed(1)}s`},"Phase 1 complete"),n){_.info("Phase 2: Generating file semantic embeddings..."),s?.({phase:"embed",current:0,total:I.length,message:"Generating embeddings..."});let N=Date.now(),R=[];if(I.forEach((w,D)=>{"summary"in w&&w.summary&&R.push({fileIdx:D,text:w.summary})}),R.length>0){_.info({count:R.length},"  \u2192 Generating file summary embeddings...");let w=R.map(j=>j.text),D=await _t(w,128);R.forEach((j,Q)=>{I[j.fileIdx].embedding=D[Q]}),_.info({count:R.length},"  \u2713 File summaries complete")}let S=Date.now()-N;Fe("embed",S),_.info({time:`${(S/1e3).toFixed(1)}s`},"Phase 2 complete")}s?.({phase:"persist",current:0,total:I.length,message:"Saving to database..."});let $=Date.now();r.files.batchSaveIndexResults(I,i,ft,gt),Fe("persist",Date.now()-$)}if(E||y.length>0){let u=Ie(i);ht(i,u||void 0)}return(y.length>0||g.length>0)&&new et(i).detectAndRepairShifts(),jt(Date.now()-d),s?.({phase:"complete",current:y.length,total:y.length,message:"Indexing complete"}),o}import xn from"path";import ki from"ignore";import In from"fs";async function Ci(i,e=Ce.DEFAULT_CONCURRENCY,t="detailed",n,s){_.info({repo:i,level:t,subPath:n},"Ensuring cache is up-to-date..."),await St(i,e);let{files:r,exports:o,imports:c}=ie.getInstance(i),l=n?r.findInSubPath(i,n):r.findAll(),a=je(i),p=ki(),d=xn.join(i,".gitignore");if(In.existsSync(d)&&p.add(In.readFileSync(d,"utf8")),a.ignore&&a.ignore.length>0&&p.add(a.ignore),p.add(ke),l=l.filter(h=>{let b=xn.relative(i,h.path);return!p.ignores(b)}),_.info({count:l.length},"Fetching data from DB..."),t==="lite"){let h=l.map(b=>({path:b.path,mtime:b.mtime}));return Ee(h,i,t,s)}if(t==="summaries"){let h=l.map(b=>({path:b.path,mtime:b.mtime,classification:b.classification||void 0,summary:b.summary||void 0}));return Ee(h,i,t,s)}let m=l.map(h=>h.path),f=o.findByFiles(m),g=t==="detailed"?c.findByFiles(m):[],E=new Map;for(let h of f){let b=E.get(h.file_path)||[];b.push(h),E.set(h.file_path,b)}let y=new Map;for(let h of g){let b=y.get(h.file_path)||[];b.push(h),y.set(h.file_path,b)}let u=l.map(h=>{let M=(E.get(h.path)||[]).map(I=>({name:I.name,kind:I.kind,signature:I.signature,line:I.start_line}));t==="structure"?M=M.map(I=>({name:I.name,kind:I.kind,line:I.line})):t==="signatures"&&(M=M.map(I=>({name:I.name,kind:I.kind,signature:I.signature,line:I.line})));let C=[];return t==="detailed"&&(C=(y.get(h.path)||[]).map(v=>({module:v.module_specifier,resolved_path:v.resolved_path}))),{path:h.path,mtime:h.mtime,classification:h.classification||void 0,summary:h.summary||void 0,exports:M,imports:C.length>0?C:void 0,chunks:[]}});return _.info({count:u.length},"Building hierarchical project tree..."),Ee(u,i,t,s)}export{Et as EmbeddingPriorityQueue,Se as EmbeddingWorkerPool,Ee as buildTree,Un as chunkFile,Si as cosineSimilarity,St as ensureCacheUpToDate,Ti as generateEmbedding,_t as generateEmbeddingsBatch,Ze as getDefaultPool,lt as parseFile,Ci as processRepo,it as scanRepo,Xe as setUseWorkerThreads,hn as shutdownDefaultPool};