@precisa-saude/fhir 0.24.1 → 0.25.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/README.md +13 -11
- package/dist/biomarkers.cjs +2 -2
- package/dist/biomarkers.js +1 -1
- package/dist/{chunk-MLH7IZZE.js → chunk-7C6N2GM6.js} +23 -5
- package/dist/chunk-7C6N2GM6.js.map +1 -0
- package/dist/{chunk-EHMCWZO3.cjs → chunk-GYCNMOSA.cjs} +23 -5
- package/dist/chunk-GYCNMOSA.cjs.map +1 -0
- package/dist/{chunk-WEA7QFS5.js → chunk-H74QZC4Z.js} +2 -2
- package/dist/{chunk-L2LN2X6Y.cjs → chunk-KFZBWFQD.cjs} +3 -3
- package/dist/{chunk-L2LN2X6Y.cjs.map → chunk-KFZBWFQD.cjs.map} +1 -1
- package/dist/{chunk-4EFTM357.cjs → chunk-PTFZQ4LK.cjs} +7 -7
- package/dist/{chunk-4EFTM357.cjs.map → chunk-PTFZQ4LK.cjs.map} +1 -1
- package/dist/{chunk-ONPF2JAB.js → chunk-SVVFCRFK.js} +2 -2
- package/dist/cli.js +23 -5
- package/dist/converter.cjs +3 -3
- package/dist/converter.js +2 -2
- package/dist/importer.cjs +3 -3
- package/dist/importer.js +2 -2
- package/dist/index.cjs +7 -7
- package/dist/index.js +3 -3
- package/package.json +1 -1
- package/dist/chunk-EHMCWZO3.cjs.map +0 -1
- package/dist/chunk-MLH7IZZE.js.map +0 -1
- /package/dist/{chunk-WEA7QFS5.js.map → chunk-H74QZC4Z.js.map} +0 -0
- /package/dist/{chunk-ONPF2JAB.js.map → chunk-SVVFCRFK.js.map} +0 -0
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"sources":["/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-L2LN2X6Y.cjs","../src/bundle-urls.ts","../src/converter.ts"],"names":[],"mappings":"AAAA;AACE;AACA;AACF,wDAA6B;AAC7B;AACE;AACF,wDAA6B;AAC7B;AACE;AACA;AACF,wDAA6B;AAC7B;AACA;ACsBO,IAAM,gBAAA,EAAkB,mCAAA;AAgBxB,IAAM,aAAA,EAAe,CAAC,QAAA,EAAA,GAC3B,CAAA,EAAA;ADpCgC;AACA;AEIc;AAChC,EAAA;AACP,IAAA;AACI,MAAA;AAAA;AACJ,IAAA;AACI,MAAA;AAAA;AACT,IAAA;AACS,MAAA;AACX,EAAA;AACF;AAK+B;AACf,EAAA;AACP,IAAA;AACI,MAAA;AACJ,IAAA;AACI,MAAA;AACT,IAAA;AACS,MAAA;AACX,EAAA;AACF;AAME;AAI8B,EAAA;AAGhB,EAAA;AACc,EAAA;AACN,EAAA;AAGwB,EAAA;AAClC,IAAA;AACR,MAAA;AACU,QAAA;AACN,UAAA;AACQ,YAAA;AACG,YAAA;AACD,YAAA;AACV,UAAA;AACF,QAAA;AACF,MAAA;AACF,IAAA;AACM,IAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAMI,MAAA;AAEF,QAAA;AACE,UAAA;AACQ,YAAA;AACe,YAAA;AACb,YAAA;AACV,UAAA;AAED,QAAA;AACL,QAAA;AACoB,UAAA;AACG,UAAA;AACb,UAAA;AACV,QAAA;AACF,MAAA;AACkB,MAAA;AACpB,IAAA;AACmB,IAAA;AACQ,IAAA;AACX,IAAA;AACd,MAAA;AACU,QAAA;AACN,UAAA;AACQ,YAAA;AACG,YAAA;AACD,YAAA;AACV,UAAA;AACF,QAAA;AACF,MAAA;AACF,IAAA;AAC6B,IAAA;AACf,IAAA;AACN,IAAA;AACC,IAAA;AACe,MAAA;AACxB,IAAA;AACF,EAAA;AAGmB,EAAA;AACY,IAAA;AACxB,EAAA;AACmB,IAAA;AAChB,MAAA;AACE,MAAA;AACF,MAAA;AACa,MAAA;AACrB,IAAA;AAGgB,IAAA;AACW,MAAA;AACvB,QAAA;AACQ,UAAA;AACE,YAAA;AACE,YAAA;AACF,YAAA;AACa,YAAA;AACrB,UAAA;AACK,UAAA;AACG,YAAA;AACE,YAAA;AACF,YAAA;AACa,YAAA;AACrB,UAAA;AACF,QAAA;AACF,MAAA;AACF,IAAA;AACF,EAAA;AAEO,EAAA;AACT;AAOE;AAII,EAAA;AACW,EAAA;AACR,IAAA;AACM,MAAA;AACT,MAAA;AACG,IAAA;AACM,MAAA;AACT,MAAA;AACG,IAAA;AACM,MAAA;AACT,MAAA;AACF,IAAA;AACW,MAAA;AACb,EAAA;AAEO,EAAA;AACK,IAAA;AACR,MAAA;AACU,QAAA;AACN,UAAA;AACQ,YAAA;AACG,YAAA;AACD,YAAA;AACV,UAAA;AACF,QAAA;AACF,MAAA;AACF,IAAA;AACM,IAAA;AACI,MAAA;AACN,QAAA;AACQ,UAAA;AAAA;AACG,UAAA;AACD,UAAA;AACV,QAAA;AACF,MAAA;AACM,MAAA;AACR,IAAA;AAES,IAAA;AAIA,IAAA;AAED,MAAA;AACU,QAAA;AACN,UAAA;AACQ,YAAA;AACG,YAAA;AACD,YAAA;AACV,UAAA;AACF,QAAA;AACF,MAAA;AAEF,IAAA;AACoB,IAAA;AACf,IAAA;AACI,IAAA;AACG,IAAA;AACJ,IAAA;AACc,IAAA;AAC5B,IAAA;AACS,IAAA;AACe,MAAA;AACxB,IAAA;AACF,EAAA;AACF;AAMkC;AACD,EAAA;AACD,EAAA;AACL,EAAA;AAElB,EAAA;AAED,IAAA;AACE,MAAA;AACwB,QAAA;AACG,QAAA;AACnB,QAAA;AACY,UAAA;AAGA,UAAA;AACF,QAAA;AACI,QAAA;AACG,QAAA;AACzB,MAAA;AAEF,IAAA;AACe,IAAA;AACH,IAAA;AACJ,IAAA;AACN,IAAA;AACJ,MAAA;AACE,QAAA;AAC0B,QAAA;AACZ,QAAA;AAChB,MAAA;AACF,IAAA;AACc,IAAA;AAEZ,IAAA;AACyB,MAAA;AACA,MAAA;AAErB,IAAA;AACyB,MAAA;AACA,MAAA;AAEzB,IAAA;AACR,EAAA;AACF;AAOE;AAI8B,EAAA;AAGL,EAAA;AACN,IAAA;AACW,MAAA;AAC1B,MAAA;AACO,MAAA;AACT,IAAA;AAEkB,IAAA;AACnB,EAAA;AAKsB,EAAA;AAGE,EAAA;AAGL,EAAA;AAEb,EAAA;AACE,IAAA;AACmB,MAAA;AACA,MAAA;AACrB,MAAA;AACL,IAAA;AACc,IAAA;AACR,IAAA;AACR,EAAA;AACF;AFxEkC;AACA;AACA;AACA;AACA;AACA;AACA;AACA;AACA","file":"/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-L2LN2X6Y.cjs","sourcesContent":[null,"/**\n * Endereço das entradas de um Bundle.\n *\n * O `fullUrl` identifica a entrada, e é contra ele que o validador resolve as\n * referências entre os recursos. Um Bundle com `subject.reference` valendo\n * `Patient/abc` só resolve se alguma entrada tiver `fullUrl` terminando em\n * `/Patient/abc`: a referência relativa é lida contra a base do `fullUrl` da\n * entrada, que é como os exemplos da própria HL7 montam Bundle de coleção.\n *\n * Antes o `fullUrl` era `urn:uuid:observation-<laudo>-<código>`, que erra duas\n * vezes. `urn:uuid:` exige a sintaxe de UUID e aquilo não era um UUID, e num\n * Bundle de entradas `urn:uuid:` a referência precisa repetir a URN inteira,\n * então nenhuma das relativas resolvia. Um laudo de 22 marcadores saía com 24\n * erros de URN e 22 referências perdidas.\n */\n/**\n * Recurso que já tem id, e por isso pode ser endereçado numa entrada.\n *\n * No FHIR o `id` é opcional, porque um recurso pode viajar sem identidade\n * própria. Numa entrada de Bundle ele não pode: sem id não há `fullUrl`, e sem\n * `fullUrl` nenhuma referência chega ao recurso. Os conversores daqui sempre\n * atribuem um, e o tipo passa a dizer isso em vez de deixar `undefined` chegar\n * até a montagem da URL.\n */\nexport type Addressable<T> = T & { id: string };\n\n/**\n * Base dos `fullUrl`.\n *\n * Não precisa responder a uma requisição: no FHIR o `fullUrl` é identidade, não\n * endereço de download. Fica sob um domínio nosso para não colidir com a\n * identidade de recurso de outra instituição, que é o risco real de usar\n * `example.org` em dado que sai da máquina.\n */\nexport const BUNDLE_BASE_URL = 'https://precisa-saude.com.br/fhir';\n\n/**\n * Monta o `fullUrl` a partir do próprio recurso.\n *\n * Recebe o recurso em vez do tipo e do id soltos de propósito. O defeito que\n * isto substitui nasceu de montar os dois lados em separado: o `fullUrl` dizia\n * `observation-demo-Hgb` enquanto o recurso tinha id `demo-Hgb`, e ninguém\n * percebeu porque nada obrigava os dois a concordarem.\n *\n * O parâmetro pede o mínimo que a URL consome, e não a união de recursos que\n * este pacote converte. Um Bundle pode carregar qualquer recurso do R4, e quem\n * acrescenta uma entrada de um tipo que não está nessa união (um `Specimen`,\n * por exemplo) precisa do mesmo endereço, senão monta o dele e as duas formas\n * divergem outra vez.\n */\nexport const entryFullUrl = (resource: Addressable<{ resourceType: string }>): string =>\n `${BUNDLE_BASE_URL}/${resource.resourceType}/${resource.id}`;\n","/**\n * FHIR Converter\n *\n * Converts lab results to FHIR R4 DiagnosticReport and Observation resources.\n * See: https://hl7.org/fhir/diagnosticreport.html\n */\n\nimport { codeToLoinc } from './biomarkers';\nimport { type Addressable, entryFullUrl } from './bundle-urls';\nimport { BIOMARKER_CODE_SYSTEM, LOINC_SYSTEM } from './code-systems';\nimport type { FHIRBundle, FHIRDiagnosticReport, FHIRObservation, FHIRPatient } from './fhir-types';\nimport type { Flag, LabObservationData, LabReportData, UserProfileData } from './types';\nimport { getDefaultUnit, unitToUCUM } from './units';\n\n// Re-export all types and functions\nexport * from './fhir-types';\n\n/**\n * Convert Flag to FHIR interpretation code\n */\nfunction interpretationCode(flag: Flag): string {\n switch (flag) {\n case 'H':\n return 'H'; // High\n case 'L':\n return 'L'; // Low\n default:\n return 'N'; // Normal\n }\n}\n\n/**\n * Convert Flag to FHIR interpretation display\n */\nfunction interpretationDisplay(flag: Flag): string {\n switch (flag) {\n case 'H':\n return 'High';\n case 'L':\n return 'Low';\n default:\n return 'Normal';\n }\n}\n\n/**\n * Convert generic lab observation to FHIR Observation\n */\nexport function labObservationToFHIR(\n observation: LabObservationData,\n patientId: string,\n laboratoryName?: string,\n): Addressable<FHIRObservation> {\n const loincCode = codeToLoinc(observation.biomarkerCode);\n // Use default unit if source unit is empty\n const sourceUnit =\n observation.unit || getDefaultUnit(observation.biomarkerCode) || observation.unit;\n const ucumUnit = unitToUCUM(sourceUnit);\n const isQualitative = observation.isQualitative || typeof observation.value === 'string';\n\n // Base observation structure\n const fhirObs: Addressable<FHIRObservation> = {\n category: [\n {\n coding: [\n {\n code: 'laboratory',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/observation-category',\n },\n ],\n },\n ],\n code: {\n // Sem LOINC, o coding LOINC simplesmente não sai. Antes ia `99999-9`,\n // que não é código LOINC nenhum: publicava sob `http://loinc.org` uma\n // afirmação falsa, e quem consumisse o bundle confiando no system\n // trataria aquilo como código de verdade. Composição corporal, densidade\n // óssea e escore de cálcio não têm LOINC, e o certo é a lacuna explícita.\n coding: [\n ...(loincCode\n ? [\n {\n code: loincCode,\n display: observation.biomarkerName,\n system: LOINC_SYSTEM,\n },\n ]\n : []),\n {\n code: observation.biomarkerCode,\n display: observation.biomarkerName,\n system: BIOMARKER_CODE_SYSTEM,\n },\n ],\n text: observation.biomarkerName,\n },\n effectiveDateTime: observation.collectionDate,\n id: `${observation.reportId}-${observation.biomarkerCode}`,\n interpretation: [\n {\n coding: [\n {\n code: interpretationCode(observation.flag),\n display: interpretationDisplay(observation.flag),\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ],\n performer: laboratoryName ? [{ display: laboratoryName }] : undefined,\n resourceType: 'Observation',\n status: 'final',\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n\n // Add value based on type (qualitative = string, quantitative = number)\n if (isQualitative) {\n fhirObs.valueString = String(observation.value);\n } else {\n fhirObs.valueQuantity = {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.value as number,\n };\n\n // Reference range only applies to quantitative values\n if (observation.referenceMin !== undefined && observation.referenceMax !== undefined) {\n fhirObs.referenceRange = [\n {\n high: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMax,\n },\n low: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMin,\n },\n },\n ];\n }\n }\n\n return fhirObs;\n}\n\n/**\n * Convert generic lab report to FHIR DiagnosticReport\n */\nexport function labReportToFHIR(\n report: LabReportData,\n patientId: string,\n observationIds: string[],\n): Addressable<FHIRDiagnosticReport> {\n // Map processing status to FHIR status\n let status: FHIRDiagnosticReport['status'];\n switch (report.processingStatus) {\n case 'complete':\n status = 'final';\n break;\n case 'partial':\n status = 'partial';\n break;\n case 'pending_review':\n status = 'preliminary';\n break;\n default:\n status = 'final';\n }\n\n return {\n category: [\n {\n coding: [\n {\n code: 'LAB',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/v2-0074',\n },\n ],\n },\n ],\n code: {\n coding: [\n {\n code: '11502-2', // Laboratory report\n display: 'Laboratory report',\n system: 'http://loinc.org',\n },\n ],\n text: 'Laboratory Results',\n },\n conclusion:\n report.overallStatus === 'NORMAL'\n ? 'All results within normal limits'\n : 'One or more abnormal results detected',\n conclusionCode:\n report.overallStatus === 'ANORMAL'\n ? [\n {\n coding: [\n {\n code: 'A',\n display: 'Abnormal',\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ]\n : undefined,\n effectiveDateTime: report.collectionDate,\n id: report.reportId,\n issued: report.createdAt,\n performer: report.laboratoryName ? [{ display: report.laboratoryName }] : undefined,\n resourceType: 'DiagnosticReport',\n result: observationIds.map((id) => ({ reference: `Observation/${id}` })),\n status,\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n}\n\n/**\n * Convert user profile to FHIR Patient\n * NOTE: CPF is intentionally excluded for privacy (LGPD compliance)\n */\nexport function userProfileToFHIR(profile: UserProfileData): Addressable<FHIRPatient> {\n const nameParts = profile.name.split(' ');\n const given = nameParts.slice(0, -1);\n const family = nameParts[nameParts.length - 1] || '';\n\n return {\n address: profile.address\n ? [\n {\n city: profile.address.city,\n country: profile.address.country || 'BR',\n line: [\n profile.address.street && profile.address.number\n ? `${profile.address.street}, ${profile.address.number}`\n : profile.address.street,\n profile.address.complement,\n ].filter(Boolean) as string[],\n postalCode: profile.address.postalCode,\n state: profile.address.state,\n },\n ]\n : undefined,\n birthDate: profile.birthDate,\n gender: profile.gender,\n id: profile.userId,\n name: [\n {\n family,\n given: given.length > 0 ? given : undefined,\n text: profile.name,\n },\n ],\n resourceType: 'Patient',\n telecom:\n [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ].length > 0\n ? [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ]\n : undefined,\n };\n}\n\n/**\n * Convert complete lab result to FHIR Bundle\n * This is the main function for exporting lab results to FHIR R4 format\n */\nexport function labResultToFHIRBundle(\n report: LabReportData,\n observations: LabObservationData[],\n userProfile: UserProfileData,\n): FHIRBundle {\n const patientId = userProfile.userId;\n\n // Convert observations\n const fhirObservations = observations.map((obs) => {\n const resource = labObservationToFHIR(\n { ...obs, collectionDate: report.collectionDate },\n patientId,\n report.laboratoryName,\n );\n\n return { fullUrl: entryFullUrl(resource), resource };\n });\n\n // Os ids vêm dos recursos já montados, e não de uma segunda montagem da mesma\n // regra. O `DiagnosticReport.result` aponta para eles, e era aqui que a\n // referência se separava do recurso.\n const observationIds = fhirObservations.map((entry) => entry.resource.id);\n\n // Convert report\n const diagnosticReport = labReportToFHIR(report, patientId, observationIds);\n\n // Convert patient\n const fhirPatient = userProfileToFHIR(userProfile);\n\n return {\n entry: [\n { fullUrl: entryFullUrl(fhirPatient), resource: fhirPatient },\n { fullUrl: entryFullUrl(diagnosticReport), resource: diagnosticReport },\n ...fhirObservations,\n ],\n resourceType: 'Bundle',\n type: 'collection',\n };\n}\n"]}
|
|
1
|
+
{"version":3,"sources":["/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-KFZBWFQD.cjs","../src/bundle-urls.ts","../src/converter.ts"],"names":[],"mappings":"AAAA;AACE;AACA;AACF,wDAA6B;AAC7B;AACE;AACF,wDAA6B;AAC7B;AACE;AACA;AACF,wDAA6B;AAC7B;AACA;ACsBO,IAAM,gBAAA,EAAkB,mCAAA;AAgBxB,IAAM,aAAA,EAAe,CAAC,QAAA,EAAA,GAC3B,CAAA,EAAA;ADpCgC;AACA;AEIc;AAChC,EAAA;AACP,IAAA;AACI,MAAA;AAAA;AACJ,IAAA;AACI,MAAA;AAAA;AACT,IAAA;AACS,MAAA;AACX,EAAA;AACF;AAK+B;AACf,EAAA;AACP,IAAA;AACI,MAAA;AACJ,IAAA;AACI,MAAA;AACT,IAAA;AACS,MAAA;AACX,EAAA;AACF;AAME;AAI8B,EAAA;AAGhB,EAAA;AACc,EAAA;AACN,EAAA;AAGwB,EAAA;AAClC,IAAA;AACR,MAAA;AACU,QAAA;AACN,UAAA;AACQ,YAAA;AACG,YAAA;AACD,YAAA;AACV,UAAA;AACF,QAAA;AACF,MAAA;AACF,IAAA;AACM,IAAA;AAAA;AAAA;AAAA;AAAA;AAAA;AAMI,MAAA;AAEF,QAAA;AACE,UAAA;AACQ,YAAA;AACe,YAAA;AACb,YAAA;AACV,UAAA;AAED,QAAA;AACL,QAAA;AACoB,UAAA;AACG,UAAA;AACb,UAAA;AACV,QAAA;AACF,MAAA;AACkB,MAAA;AACpB,IAAA;AACmB,IAAA;AACQ,IAAA;AACX,IAAA;AACd,MAAA;AACU,QAAA;AACN,UAAA;AACQ,YAAA;AACG,YAAA;AACD,YAAA;AACV,UAAA;AACF,QAAA;AACF,MAAA;AACF,IAAA;AAC6B,IAAA;AACf,IAAA;AACN,IAAA;AACC,IAAA;AACe,MAAA;AACxB,IAAA;AACF,EAAA;AAGmB,EAAA;AACY,IAAA;AACxB,EAAA;AACmB,IAAA;AAChB,MAAA;AACE,MAAA;AACF,MAAA;AACa,MAAA;AACrB,IAAA;AAGgB,IAAA;AACW,MAAA;AACvB,QAAA;AACQ,UAAA;AACE,YAAA;AACE,YAAA;AACF,YAAA;AACa,YAAA;AACrB,UAAA;AACK,UAAA;AACG,YAAA;AACE,YAAA;AACF,YAAA;AACa,YAAA;AACrB,UAAA;AACF,QAAA;AACF,MAAA;AACF,IAAA;AACF,EAAA;AAEO,EAAA;AACT;AAOE;AAII,EAAA;AACW,EAAA;AACR,IAAA;AACM,MAAA;AACT,MAAA;AACG,IAAA;AACM,MAAA;AACT,MAAA;AACG,IAAA;AACM,MAAA;AACT,MAAA;AACF,IAAA;AACW,MAAA;AACb,EAAA;AAEO,EAAA;AACK,IAAA;AACR,MAAA;AACU,QAAA;AACN,UAAA;AACQ,YAAA;AACG,YAAA;AACD,YAAA;AACV,UAAA;AACF,QAAA;AACF,MAAA;AACF,IAAA;AACM,IAAA;AACI,MAAA;AACN,QAAA;AACQ,UAAA;AAAA;AACG,UAAA;AACD,UAAA;AACV,QAAA;AACF,MAAA;AACM,MAAA;AACR,IAAA;AAES,IAAA;AAIA,IAAA;AAED,MAAA;AACU,QAAA;AACN,UAAA;AACQ,YAAA;AACG,YAAA;AACD,YAAA;AACV,UAAA;AACF,QAAA;AACF,MAAA;AAEF,IAAA;AACoB,IAAA;AACf,IAAA;AACI,IAAA;AACG,IAAA;AACJ,IAAA;AACc,IAAA;AAC5B,IAAA;AACS,IAAA;AACe,MAAA;AACxB,IAAA;AACF,EAAA;AACF;AAMkC;AACD,EAAA;AACD,EAAA;AACL,EAAA;AAElB,EAAA;AAED,IAAA;AACE,MAAA;AACwB,QAAA;AACG,QAAA;AACnB,QAAA;AACY,UAAA;AAGA,UAAA;AACF,QAAA;AACI,QAAA;AACG,QAAA;AACzB,MAAA;AAEF,IAAA;AACe,IAAA;AACH,IAAA;AACJ,IAAA;AACN,IAAA;AACJ,MAAA;AACE,QAAA;AAC0B,QAAA;AACZ,QAAA;AAChB,MAAA;AACF,IAAA;AACc,IAAA;AAEZ,IAAA;AACyB,MAAA;AACA,MAAA;AAErB,IAAA;AACyB,MAAA;AACA,MAAA;AAEzB,IAAA;AACR,EAAA;AACF;AAOE;AAI8B,EAAA;AAGL,EAAA;AACN,IAAA;AACW,MAAA;AAC1B,MAAA;AACO,MAAA;AACT,IAAA;AAEkB,IAAA;AACnB,EAAA;AAKsB,EAAA;AAGE,EAAA;AAGL,EAAA;AAEb,EAAA;AACE,IAAA;AACmB,MAAA;AACA,MAAA;AACrB,MAAA;AACL,IAAA;AACc,IAAA;AACR,IAAA;AACR,EAAA;AACF;AFxEkC;AACA;AACA;AACA;AACA;AACA;AACA;AACA;AACA","file":"/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-KFZBWFQD.cjs","sourcesContent":[null,"/**\n * Endereço das entradas de um Bundle.\n *\n * O `fullUrl` identifica a entrada, e é contra ele que o validador resolve as\n * referências entre os recursos. Um Bundle com `subject.reference` valendo\n * `Patient/abc` só resolve se alguma entrada tiver `fullUrl` terminando em\n * `/Patient/abc`: a referência relativa é lida contra a base do `fullUrl` da\n * entrada, que é como os exemplos da própria HL7 montam Bundle de coleção.\n *\n * Antes o `fullUrl` era `urn:uuid:observation-<laudo>-<código>`, que erra duas\n * vezes. `urn:uuid:` exige a sintaxe de UUID e aquilo não era um UUID, e num\n * Bundle de entradas `urn:uuid:` a referência precisa repetir a URN inteira,\n * então nenhuma das relativas resolvia. Um laudo de 22 marcadores saía com 24\n * erros de URN e 22 referências perdidas.\n */\n/**\n * Recurso que já tem id, e por isso pode ser endereçado numa entrada.\n *\n * No FHIR o `id` é opcional, porque um recurso pode viajar sem identidade\n * própria. Numa entrada de Bundle ele não pode: sem id não há `fullUrl`, e sem\n * `fullUrl` nenhuma referência chega ao recurso. Os conversores daqui sempre\n * atribuem um, e o tipo passa a dizer isso em vez de deixar `undefined` chegar\n * até a montagem da URL.\n */\nexport type Addressable<T> = T & { id: string };\n\n/**\n * Base dos `fullUrl`.\n *\n * Não precisa responder a uma requisição: no FHIR o `fullUrl` é identidade, não\n * endereço de download. Fica sob um domínio nosso para não colidir com a\n * identidade de recurso de outra instituição, que é o risco real de usar\n * `example.org` em dado que sai da máquina.\n */\nexport const BUNDLE_BASE_URL = 'https://precisa-saude.com.br/fhir';\n\n/**\n * Monta o `fullUrl` a partir do próprio recurso.\n *\n * Recebe o recurso em vez do tipo e do id soltos de propósito. O defeito que\n * isto substitui nasceu de montar os dois lados em separado: o `fullUrl` dizia\n * `observation-demo-Hgb` enquanto o recurso tinha id `demo-Hgb`, e ninguém\n * percebeu porque nada obrigava os dois a concordarem.\n *\n * O parâmetro pede o mínimo que a URL consome, e não a união de recursos que\n * este pacote converte. Um Bundle pode carregar qualquer recurso do R4, e quem\n * acrescenta uma entrada de um tipo que não está nessa união (um `Specimen`,\n * por exemplo) precisa do mesmo endereço, senão monta o dele e as duas formas\n * divergem outra vez.\n */\nexport const entryFullUrl = (resource: Addressable<{ resourceType: string }>): string =>\n `${BUNDLE_BASE_URL}/${resource.resourceType}/${resource.id}`;\n","/**\n * FHIR Converter\n *\n * Converts lab results to FHIR R4 DiagnosticReport and Observation resources.\n * See: https://hl7.org/fhir/diagnosticreport.html\n */\n\nimport { codeToLoinc } from './biomarkers';\nimport { type Addressable, entryFullUrl } from './bundle-urls';\nimport { BIOMARKER_CODE_SYSTEM, LOINC_SYSTEM } from './code-systems';\nimport type { FHIRBundle, FHIRDiagnosticReport, FHIRObservation, FHIRPatient } from './fhir-types';\nimport type { Flag, LabObservationData, LabReportData, UserProfileData } from './types';\nimport { getDefaultUnit, unitToUCUM } from './units';\n\n// Re-export all types and functions\nexport * from './fhir-types';\n\n/**\n * Convert Flag to FHIR interpretation code\n */\nfunction interpretationCode(flag: Flag): string {\n switch (flag) {\n case 'H':\n return 'H'; // High\n case 'L':\n return 'L'; // Low\n default:\n return 'N'; // Normal\n }\n}\n\n/**\n * Convert Flag to FHIR interpretation display\n */\nfunction interpretationDisplay(flag: Flag): string {\n switch (flag) {\n case 'H':\n return 'High';\n case 'L':\n return 'Low';\n default:\n return 'Normal';\n }\n}\n\n/**\n * Convert generic lab observation to FHIR Observation\n */\nexport function labObservationToFHIR(\n observation: LabObservationData,\n patientId: string,\n laboratoryName?: string,\n): Addressable<FHIRObservation> {\n const loincCode = codeToLoinc(observation.biomarkerCode);\n // Use default unit if source unit is empty\n const sourceUnit =\n observation.unit || getDefaultUnit(observation.biomarkerCode) || observation.unit;\n const ucumUnit = unitToUCUM(sourceUnit);\n const isQualitative = observation.isQualitative || typeof observation.value === 'string';\n\n // Base observation structure\n const fhirObs: Addressable<FHIRObservation> = {\n category: [\n {\n coding: [\n {\n code: 'laboratory',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/observation-category',\n },\n ],\n },\n ],\n code: {\n // Sem LOINC, o coding LOINC simplesmente não sai. Antes ia `99999-9`,\n // que não é código LOINC nenhum: publicava sob `http://loinc.org` uma\n // afirmação falsa, e quem consumisse o bundle confiando no system\n // trataria aquilo como código de verdade. Composição corporal, densidade\n // óssea e escore de cálcio não têm LOINC, e o certo é a lacuna explícita.\n coding: [\n ...(loincCode\n ? [\n {\n code: loincCode,\n display: observation.biomarkerName,\n system: LOINC_SYSTEM,\n },\n ]\n : []),\n {\n code: observation.biomarkerCode,\n display: observation.biomarkerName,\n system: BIOMARKER_CODE_SYSTEM,\n },\n ],\n text: observation.biomarkerName,\n },\n effectiveDateTime: observation.collectionDate,\n id: `${observation.reportId}-${observation.biomarkerCode}`,\n interpretation: [\n {\n coding: [\n {\n code: interpretationCode(observation.flag),\n display: interpretationDisplay(observation.flag),\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ],\n performer: laboratoryName ? [{ display: laboratoryName }] : undefined,\n resourceType: 'Observation',\n status: 'final',\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n\n // Add value based on type (qualitative = string, quantitative = number)\n if (isQualitative) {\n fhirObs.valueString = String(observation.value);\n } else {\n fhirObs.valueQuantity = {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.value as number,\n };\n\n // Reference range only applies to quantitative values\n if (observation.referenceMin !== undefined && observation.referenceMax !== undefined) {\n fhirObs.referenceRange = [\n {\n high: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMax,\n },\n low: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMin,\n },\n },\n ];\n }\n }\n\n return fhirObs;\n}\n\n/**\n * Convert generic lab report to FHIR DiagnosticReport\n */\nexport function labReportToFHIR(\n report: LabReportData,\n patientId: string,\n observationIds: string[],\n): Addressable<FHIRDiagnosticReport> {\n // Map processing status to FHIR status\n let status: FHIRDiagnosticReport['status'];\n switch (report.processingStatus) {\n case 'complete':\n status = 'final';\n break;\n case 'partial':\n status = 'partial';\n break;\n case 'pending_review':\n status = 'preliminary';\n break;\n default:\n status = 'final';\n }\n\n return {\n category: [\n {\n coding: [\n {\n code: 'LAB',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/v2-0074',\n },\n ],\n },\n ],\n code: {\n coding: [\n {\n code: '11502-2', // Laboratory report\n display: 'Laboratory report',\n system: 'http://loinc.org',\n },\n ],\n text: 'Laboratory Results',\n },\n conclusion:\n report.overallStatus === 'NORMAL'\n ? 'All results within normal limits'\n : 'One or more abnormal results detected',\n conclusionCode:\n report.overallStatus === 'ANORMAL'\n ? [\n {\n coding: [\n {\n code: 'A',\n display: 'Abnormal',\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ]\n : undefined,\n effectiveDateTime: report.collectionDate,\n id: report.reportId,\n issued: report.createdAt,\n performer: report.laboratoryName ? [{ display: report.laboratoryName }] : undefined,\n resourceType: 'DiagnosticReport',\n result: observationIds.map((id) => ({ reference: `Observation/${id}` })),\n status,\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n}\n\n/**\n * Convert user profile to FHIR Patient\n * NOTE: CPF is intentionally excluded for privacy (LGPD compliance)\n */\nexport function userProfileToFHIR(profile: UserProfileData): Addressable<FHIRPatient> {\n const nameParts = profile.name.split(' ');\n const given = nameParts.slice(0, -1);\n const family = nameParts[nameParts.length - 1] || '';\n\n return {\n address: profile.address\n ? [\n {\n city: profile.address.city,\n country: profile.address.country || 'BR',\n line: [\n profile.address.street && profile.address.number\n ? `${profile.address.street}, ${profile.address.number}`\n : profile.address.street,\n profile.address.complement,\n ].filter(Boolean) as string[],\n postalCode: profile.address.postalCode,\n state: profile.address.state,\n },\n ]\n : undefined,\n birthDate: profile.birthDate,\n gender: profile.gender,\n id: profile.userId,\n name: [\n {\n family,\n given: given.length > 0 ? given : undefined,\n text: profile.name,\n },\n ],\n resourceType: 'Patient',\n telecom:\n [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ].length > 0\n ? [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ]\n : undefined,\n };\n}\n\n/**\n * Convert complete lab result to FHIR Bundle\n * This is the main function for exporting lab results to FHIR R4 format\n */\nexport function labResultToFHIRBundle(\n report: LabReportData,\n observations: LabObservationData[],\n userProfile: UserProfileData,\n): FHIRBundle {\n const patientId = userProfile.userId;\n\n // Convert observations\n const fhirObservations = observations.map((obs) => {\n const resource = labObservationToFHIR(\n { ...obs, collectionDate: report.collectionDate },\n patientId,\n report.laboratoryName,\n );\n\n return { fullUrl: entryFullUrl(resource), resource };\n });\n\n // Os ids vêm dos recursos já montados, e não de uma segunda montagem da mesma\n // regra. O `DiagnosticReport.result` aponta para eles, e era aqui que a\n // referência se separava do recurso.\n const observationIds = fhirObservations.map((entry) => entry.resource.id);\n\n // Convert report\n const diagnosticReport = labReportToFHIR(report, patientId, observationIds);\n\n // Convert patient\n const fhirPatient = userProfileToFHIR(userProfile);\n\n return {\n entry: [\n { fullUrl: entryFullUrl(fhirPatient), resource: fhirPatient },\n { fullUrl: entryFullUrl(diagnosticReport), resource: diagnosticReport },\n ...fhirObservations,\n ],\n resourceType: 'Bundle',\n type: 'collection',\n };\n}\n"]}
|
|
@@ -8,7 +8,7 @@ var _chunkOR67NJDZcjs = require('./chunk-OR67NJDZ.cjs');
|
|
|
8
8
|
|
|
9
9
|
|
|
10
10
|
|
|
11
|
-
var
|
|
11
|
+
var _chunkGYCNMOSAcjs = require('./chunk-GYCNMOSA.cjs');
|
|
12
12
|
|
|
13
13
|
|
|
14
14
|
var _chunk3ILBFLVQcjs = require('./chunk-3ILBFLVQ.cjs');
|
|
@@ -33,11 +33,11 @@ function resolveBiomarkerCode(observation) {
|
|
|
33
33
|
} else {
|
|
34
34
|
reason = "No code found in observation coding";
|
|
35
35
|
}
|
|
36
|
-
const fromLoinc = loincCode ?
|
|
36
|
+
const fromLoinc = loincCode ? _chunkGYCNMOSAcjs.loincToCode.call(void 0, loincCode) : void 0;
|
|
37
37
|
if (fromLoinc) return { internalCode: fromLoinc, loincCode, reason };
|
|
38
|
-
if (declaredCode &&
|
|
39
|
-
const canonical =
|
|
40
|
-
return { internalCode: canonical, loincCode:
|
|
38
|
+
if (declaredCode && _chunkGYCNMOSAcjs.isValidCode.call(void 0, declaredCode)) {
|
|
39
|
+
const canonical = _chunkGYCNMOSAcjs.normalizeCode.call(void 0, declaredCode);
|
|
40
|
+
return { internalCode: canonical, loincCode: _chunkGYCNMOSAcjs.codeToLoinc.call(void 0, canonical), reason };
|
|
41
41
|
}
|
|
42
42
|
return { loincCode, reason };
|
|
43
43
|
}
|
|
@@ -74,7 +74,7 @@ function mapFHIRObservationToInternal(observation, index) {
|
|
|
74
74
|
skipped: { index, loincCode, reason, resourceType: "Observation" }
|
|
75
75
|
};
|
|
76
76
|
}
|
|
77
|
-
const definition =
|
|
77
|
+
const definition = _chunkGYCNMOSAcjs.getDefinitionByCode.call(void 0, internalCode);
|
|
78
78
|
let value;
|
|
79
79
|
let unit = "";
|
|
80
80
|
let isQualitative = false;
|
|
@@ -162,4 +162,4 @@ function processImportBundle(data) {
|
|
|
162
162
|
|
|
163
163
|
|
|
164
164
|
exports.MAX_OBSERVATIONS = MAX_OBSERVATIONS; exports.MAX_FILE_SIZE = MAX_FILE_SIZE; exports.extractObservationsFromBundle = extractObservationsFromBundle; exports.mapFHIRObservationToInternal = mapFHIRObservationToInternal; exports.processImportBundle = processImportBundle;
|
|
165
|
-
//# sourceMappingURL=chunk-
|
|
165
|
+
//# sourceMappingURL=chunk-PTFZQ4LK.cjs.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"sources":["/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-4EFTM357.cjs","../src/importer.ts"],"names":[],"mappings":"AAAA;AACE;AACA;AACF,wDAA6B;AAC7B;AACE;AACA;AACA;AACA;AACA;AACF,wDAA6B;AAC7B;AACE;AACF,wDAA6B;AAC7B;AACA;ACgDA,IAAM,iBAAA,EAAmB,GAAA;AACzB,IAAM,cAAA,EAAgB,GAAA,EAAK,KAAA,EAAO,IAAA;AAclC,SAAS,oBAAA,CAAqB,WAAA,EAI5B;AACA,EAAA,MAAM,OAAA,mCAAS,WAAA,mBAAY,IAAA,6BAAM,QAAA,UAAU,CAAC,GAAA;AAC5C,EAAA,MAAM,UAAA,kBAAY,MAAA,qBAAO,IAAA,mBAAK,CAAC,CAAA,EAAA,GAAM,CAAA,CAAE,OAAA,IAAW,8BAAY,CAAA,6BAAG,MAAA;AACjE,EAAA,MAAM,aAAA,kBAAe,MAAA,qBAAO,IAAA,mBAAK,CAAC,CAAA,EAAA,GAAM,CAAA,CAAE,OAAA,IAAW,uCAAqB,CAAA,6BAAG,MAAA;AAE7E,EAAA,MAAM,UAAA,EAAY;AAAA,IAChB,GAAI,UAAA,EAAY,CAAC,CAAA,MAAA,EAAS,SAAS,CAAA,CAAA;AACf,IAAA;AACtB,EAAA;AAOI,EAAA;AACsB,EAAA;AACE,IAAA;AACE,EAAA;AACO,IAAA;AAC1B,IAAA;AACJ,EAAA;AACI,IAAA;AACX,EAAA;AAE8B,EAAA;AACN,EAAA;AAEQ,EAAA;AAOE,IAAA;AAIE,IAAA;AACpC,EAAA;AAE2B,EAAA;AAC7B;AAKmE;AACxC,EAAA;AACU,EAAA;AACA,EAAA;AAC5B,EAAA;AACT;AAK8C;AAIH,EAAA;AACR,EAAA;AAEA,EAAA;AACH,IAAA;AACP,IAAA;AACc,MAAA;AACjC,MAAA;AACF,IAAA;AAEmB,IAAA;AAEjB,MAAA;AACF,IAAA;AAE2B,IAAA;AACQ,MAAA;AACjC,MAAA;AACF,IAAA;AAEmD,IAAA;AACrD,EAAA;AAE+B,EAAA;AACjC;AAME;AAGiC,EAAA;AAEd,EAAA;AACV,IAAA;AACwB,MAAA;AAC/B,IAAA;AACF,EAAA;AAEmB,EAAA;AAGf,EAAA;AACO,EAAA;AACS,EAAA;AAEW,EAAA;AACK,IAAA;AACD,IAAA;AACC,EAAA;AACd,IAAA;AACJ,IAAA;AACX,EAAA;AACE,IAAA;AACI,MAAA;AACP,QAAA;AACA,QAAA;AACQ,QAAA;AACM,QAAA;AAChB,MAAA;AACF,IAAA;AACF,EAAA;AAGmC,EAAA;AACd,EAAA;AACZ,IAAA;AACI,MAAA;AACP,QAAA;AACA,QAAA;AACQ,QAAA;AACM,QAAA;AAChB,MAAA;AACF,IAAA;AACF,EAAA;AAGI,EAAA;AACA,EAAA;AACiC,EAAA;AACR,IAAA;AACA,IAAA;AAC7B,EAAA;AAEsC,EAAA;AACrB,IAAA;AAEK,IAAA;AACpB,IAAA;AAC6B,IAAA;AAC7B,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACkC,IAAA;AAClC,IAAA;AACF,EAAA;AAE+B,EAAA;AACjC;AAKqE;AAE1C,EAAA;AACQ,EAAA;AACxB,IAAA;AACG,MAAA;AACG,MAAA;AACD,MAAA;AACM,MAAA;AAClB,IAAA;AACF,EAAA;AAEe,EAAA;AAGmB,EAAA;AAGO,EAAA;AACK,EAAA;AAEb,EAAA;AAChB,IAAA;AAEc,IAAA;AACK,MAAA;AAC3B,IAAA;AACyB,MAAA;AAChC,IAAA;AACF,EAAA;AAEO,EAAA;AACI,IAAA;AACT,IAAA;AACS,IAAA;AACoB,IAAA;AAC/B,EAAA;AACF;ADnIuC;AACA;AACA;AACA;AACA;AACA;AACA;AACA","file":"/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-4EFTM357.cjs","sourcesContent":[null,"/**\n * FHIR Importer\n *\n * Parses FHIR R4 Bundles and extracts Observation resources with known LOINC codes,\n * mapping them to internal biomarker codes for storage as lab results.\n */\n\nimport {\n codeToLoinc,\n getDefinitionByCode,\n isValidCode,\n loincToCode,\n normalizeCode,\n} from './biomarkers';\nimport { BIOMARKER_CODE_SYSTEM, LOINC_SYSTEM } from './code-systems';\nimport type { FHIRBundle, FHIRObservation } from './fhir-types';\nimport { validateFHIRImportBundle } from './validators';\n\nexport interface ImportedObservation {\n biomarkerCode: string;\n biomarkerName: string;\n collectionDate: string;\n flag: 'H' | 'L' | '';\n isQualitative: boolean;\n /** Ausente nos biomarcadores sem LOINC publicado, como composição corporal. */\n loincCode?: string;\n referenceMax?: number;\n referenceMin?: number;\n unit: string;\n value: number | string;\n}\n\nexport interface SkippedEntry {\n index: number;\n loincCode?: string;\n reason: string;\n resourceType?: string;\n}\n\nexport interface ImportError {\n details: string;\n field: string;\n}\n\nexport interface FHIRImportResult {\n errors: ImportError[];\n imported: ImportedObservation[];\n skipped: SkippedEntry[];\n totalProcessed: number;\n}\n\n/**\n * Limites de importação.\n *\n * Uma Observation exportada ocupa cerca de 1,25KB em JSON compacto e 2,75KB\n * quando o arquivo vem indentado, medido sobre um histórico real de 998\n * Observations em 61 laudos. Nesse tamanho, 5000 Observations dão 6,0MB\n * compactos ou 13,1MB indentados, e por isso o teto de arquivo é 15MB: cobre\n * as duas formas com folga.\n *\n * Na densidade desse mesmo histórico (16 Observations por laudo), 5000\n * equivalem a cerca de 300 laudos.\n */\nconst MAX_OBSERVATIONS = 5000;\nconst MAX_FILE_SIZE = 15 * 1024 * 1024; // 15MB\n\n/**\n * Resolve o código interno do biomarcador a partir do `code.coding`.\n *\n * LOINC primeiro, que é o vocabulário que arquivos de terceiros usam. Quando\n * não resolve, cai para o coding de códigos internos, presente nos arquivos\n * exportados pela própria plataforma.\n *\n * O fallback cobre dois casos: biomarcadores sem LOINC publicado (composição\n * corporal, densidade óssea, escore de cálcio) e arquivos antigos, exportados\n * quando esses biomarcadores saíam com o placeholder `99999-9`, que não\n * resolve para nada.\n */\nfunction resolveBiomarkerCode(observation: FHIRObservation): {\n internalCode?: string;\n loincCode?: string;\n reason: string;\n} {\n const coding = observation.code?.coding ?? [];\n const loincCode = coding.find((c) => c.system === LOINC_SYSTEM)?.code;\n const declaredCode = coding.find((c) => c.system === BIOMARKER_CODE_SYSTEM)?.code;\n\n const seenCodes = [\n ...(loincCode ? [`LOINC ${loincCode}`] : []),\n ...(declaredCode ? [`biomarker code ${declaredCode}`] : []),\n ];\n\n // Três motivos distintos de descarte, que antes se confundiam num só. Sem\n // essa separação, um arquivo em SNOMED relatava \"nenhum código encontrado\",\n // sugerindo `coding` vazio quando na verdade o código existia e estava num\n // system que não tratamos. Para importação de terceiros, é a diferença entre\n // um diagnóstico acionável e um enigma.\n let reason: string;\n if (seenCodes.length > 0) {\n reason = `Unknown code: ${seenCodes.join(', ')}`;\n } else if (coding.length > 0) {\n const systems = [...new Set(coding.map((c) => c.system ?? '(sem system)'))];\n reason = `No code in a supported system (found: ${systems.join(', ')})`;\n } else {\n reason = 'No code found in observation coding';\n }\n\n const fromLoinc = loincCode ? loincToCode(loincCode) : undefined;\n if (fromLoinc) return { internalCode: fromLoinc, loincCode, reason };\n\n if (declaredCode && isValidCode(declaredCode)) {\n // `isValidCode` aceita alias, mas alias não serve como código armazenado:\n // 49 definições têm um, e tanto `codeToLoinc` quanto as faixas de\n // referência são indexadas só pelo canônico. Sem normalizar, `VLDL_Cholesterol`\n // entraria no lugar de `VLDL` e perderia o LOINC 13458-5 que ele tem.\n // Importar um Bundle é fronteira de dados, que é onde `normalizeCode` deve\n // ser aplicado.\n const canonical = normalizeCode(declaredCode);\n\n // `codeToLoinc` devolve undefined para quem não tem LOINC, que é o caso\n // esperado aqui. O campo fica de fora em vez de receber um valor inventado.\n return { internalCode: canonical, loincCode: codeToLoinc(canonical), reason };\n }\n\n return { loincCode, reason };\n}\n\n/**\n * Extract interpretation flag from Observation\n */\nfunction extractFlag(observation: FHIRObservation): 'H' | 'L' | '' {\n const code = observation.interpretation?.[0]?.coding?.[0]?.code;\n if (code === 'H' || code === 'HH') return 'H';\n if (code === 'L' || code === 'LL') return 'L';\n return '';\n}\n\n/**\n * Extract Observation resources from a FHIR Bundle\n */\nexport function extractObservationsFromBundle(bundle: FHIRBundle): {\n observations: FHIRObservation[];\n skipped: SkippedEntry[];\n} {\n const observations: FHIRObservation[] = [];\n const skipped: SkippedEntry[] = [];\n\n for (let i = 0; i < bundle.entry.length; i++) {\n const entry = bundle.entry[i]!;\n if (!entry.resource) {\n skipped.push({ index: i, reason: 'Entry has no resource' });\n continue;\n }\n\n if (entry.resource.resourceType !== 'Observation') {\n // Non-observation resources are silently skipped (Patient, DiagnosticReport, etc.)\n continue;\n }\n\n if (observations.length >= MAX_OBSERVATIONS) {\n skipped.push({ index: i, reason: `Maximum of ${MAX_OBSERVATIONS} observations exceeded` });\n continue;\n }\n\n observations.push(entry.resource as FHIRObservation);\n }\n\n return { observations, skipped };\n}\n\n/**\n * Map a FHIR Observation to internal format using LOINC→biomarker code lookup\n */\nexport function mapFHIRObservationToInternal(\n observation: FHIRObservation,\n index: number,\n): { observation: ImportedObservation } | { skipped: SkippedEntry } {\n const { internalCode, loincCode, reason } = resolveBiomarkerCode(observation);\n\n if (!internalCode) {\n return {\n skipped: { index, loincCode, reason, resourceType: 'Observation' },\n };\n }\n\n const definition = getDefinitionByCode(internalCode);\n\n // Extract value\n let value: number | string;\n let unit = '';\n let isQualitative = false;\n\n if (observation.valueQuantity?.value !== undefined) {\n value = observation.valueQuantity.value;\n unit = observation.valueQuantity.unit || observation.valueQuantity.code || '';\n } else if (observation.valueString) {\n value = observation.valueString;\n isQualitative = true;\n } else {\n return {\n skipped: {\n index,\n loincCode,\n reason: 'Observation has no value (valueQuantity or valueString)',\n resourceType: 'Observation',\n },\n };\n }\n\n // Extract collection date (effectiveDateTime or effectivePeriod.start)\n const collectionDate = observation.effectiveDateTime || observation.effectivePeriod?.start || '';\n if (!collectionDate) {\n return {\n skipped: {\n index,\n loincCode,\n reason: 'Observation has no effectiveDateTime or effectivePeriod.start',\n resourceType: 'Observation',\n },\n };\n }\n\n // Extract reference ranges\n let referenceMin: number | undefined;\n let referenceMax: number | undefined;\n if (observation.referenceRange?.[0]) {\n referenceMin = observation.referenceRange[0].low?.value;\n referenceMax = observation.referenceRange[0].high?.value;\n }\n\n const imported: ImportedObservation = {\n biomarkerCode: internalCode,\n biomarkerName:\n definition?.names.pt[0] || definition?.names.en[0] || observation.code.text || internalCode,\n collectionDate,\n flag: extractFlag(observation),\n isQualitative,\n loincCode,\n referenceMax,\n referenceMin,\n unit: unit || definition?.unit || '',\n value,\n };\n\n return { observation: imported };\n}\n\n/**\n * Process a complete FHIR Bundle for import\n */\nexport function processImportBundle(data: unknown): FHIRImportResult {\n // Structural validation\n const validationErrors = validateFHIRImportBundle(data);\n if (validationErrors.length > 0) {\n return {\n errors: validationErrors,\n imported: [],\n skipped: [],\n totalProcessed: 0,\n };\n }\n\n const bundle = data as FHIRBundle;\n\n // Extract observations\n const { observations, skipped } = extractObservationsFromBundle(bundle);\n\n // Map each observation to internal format\n const imported: ImportedObservation[] = [];\n const allSkipped: SkippedEntry[] = [...skipped];\n\n for (let i = 0; i < observations.length; i++) {\n const result = mapFHIRObservationToInternal(observations[i]!, i);\n\n if ('observation' in result) {\n imported.push(result.observation);\n } else {\n allSkipped.push(result.skipped);\n }\n }\n\n return {\n errors: [],\n imported,\n skipped: allSkipped,\n totalProcessed: observations.length,\n };\n}\n\nexport { MAX_FILE_SIZE, MAX_OBSERVATIONS };\n"]}
|
|
1
|
+
{"version":3,"sources":["/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-PTFZQ4LK.cjs","../src/importer.ts"],"names":[],"mappings":"AAAA;AACE;AACA;AACF,wDAA6B;AAC7B;AACE;AACA;AACA;AACA;AACA;AACF,wDAA6B;AAC7B;AACE;AACF,wDAA6B;AAC7B;AACA;ACgDA,IAAM,iBAAA,EAAmB,GAAA;AACzB,IAAM,cAAA,EAAgB,GAAA,EAAK,KAAA,EAAO,IAAA;AAclC,SAAS,oBAAA,CAAqB,WAAA,EAI5B;AACA,EAAA,MAAM,OAAA,mCAAS,WAAA,mBAAY,IAAA,6BAAM,QAAA,UAAU,CAAC,GAAA;AAC5C,EAAA,MAAM,UAAA,kBAAY,MAAA,qBAAO,IAAA,mBAAK,CAAC,CAAA,EAAA,GAAM,CAAA,CAAE,OAAA,IAAW,8BAAY,CAAA,6BAAG,MAAA;AACjE,EAAA,MAAM,aAAA,kBAAe,MAAA,qBAAO,IAAA,mBAAK,CAAC,CAAA,EAAA,GAAM,CAAA,CAAE,OAAA,IAAW,uCAAqB,CAAA,6BAAG,MAAA;AAE7E,EAAA,MAAM,UAAA,EAAY;AAAA,IAChB,GAAI,UAAA,EAAY,CAAC,CAAA,MAAA,EAAS,SAAS,CAAA,CAAA;AACf,IAAA;AACtB,EAAA;AAOI,EAAA;AACsB,EAAA;AACE,IAAA;AACE,EAAA;AACO,IAAA;AAC1B,IAAA;AACJ,EAAA;AACI,IAAA;AACX,EAAA;AAE8B,EAAA;AACN,EAAA;AAEQ,EAAA;AAOE,IAAA;AAIE,IAAA;AACpC,EAAA;AAE2B,EAAA;AAC7B;AAKmE;AACxC,EAAA;AACU,EAAA;AACA,EAAA;AAC5B,EAAA;AACT;AAK8C;AAIH,EAAA;AACR,EAAA;AAEA,EAAA;AACH,IAAA;AACP,IAAA;AACc,MAAA;AACjC,MAAA;AACF,IAAA;AAEmB,IAAA;AAEjB,MAAA;AACF,IAAA;AAE2B,IAAA;AACQ,MAAA;AACjC,MAAA;AACF,IAAA;AAEmD,IAAA;AACrD,EAAA;AAE+B,EAAA;AACjC;AAME;AAGiC,EAAA;AAEd,EAAA;AACV,IAAA;AACwB,MAAA;AAC/B,IAAA;AACF,EAAA;AAEmB,EAAA;AAGf,EAAA;AACO,EAAA;AACS,EAAA;AAEW,EAAA;AACK,IAAA;AACD,IAAA;AACC,EAAA;AACd,IAAA;AACJ,IAAA;AACX,EAAA;AACE,IAAA;AACI,MAAA;AACP,QAAA;AACA,QAAA;AACQ,QAAA;AACM,QAAA;AAChB,MAAA;AACF,IAAA;AACF,EAAA;AAGmC,EAAA;AACd,EAAA;AACZ,IAAA;AACI,MAAA;AACP,QAAA;AACA,QAAA;AACQ,QAAA;AACM,QAAA;AAChB,MAAA;AACF,IAAA;AACF,EAAA;AAGI,EAAA;AACA,EAAA;AACiC,EAAA;AACR,IAAA;AACA,IAAA;AAC7B,EAAA;AAEsC,EAAA;AACrB,IAAA;AAEK,IAAA;AACpB,IAAA;AAC6B,IAAA;AAC7B,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACkC,IAAA;AAClC,IAAA;AACF,EAAA;AAE+B,EAAA;AACjC;AAKqE;AAE1C,EAAA;AACQ,EAAA;AACxB,IAAA;AACG,MAAA;AACG,MAAA;AACD,MAAA;AACM,MAAA;AAClB,IAAA;AACF,EAAA;AAEe,EAAA;AAGmB,EAAA;AAGO,EAAA;AACK,EAAA;AAEb,EAAA;AAChB,IAAA;AAEc,IAAA;AACK,MAAA;AAC3B,IAAA;AACyB,MAAA;AAChC,IAAA;AACF,EAAA;AAEO,EAAA;AACI,IAAA;AACT,IAAA;AACS,IAAA;AACoB,IAAA;AAC/B,EAAA;AACF;ADnIuC;AACA;AACA;AACA;AACA;AACA;AACA;AACA","file":"/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-PTFZQ4LK.cjs","sourcesContent":[null,"/**\n * FHIR Importer\n *\n * Parses FHIR R4 Bundles and extracts Observation resources with known LOINC codes,\n * mapping them to internal biomarker codes for storage as lab results.\n */\n\nimport {\n codeToLoinc,\n getDefinitionByCode,\n isValidCode,\n loincToCode,\n normalizeCode,\n} from './biomarkers';\nimport { BIOMARKER_CODE_SYSTEM, LOINC_SYSTEM } from './code-systems';\nimport type { FHIRBundle, FHIRObservation } from './fhir-types';\nimport { validateFHIRImportBundle } from './validators';\n\nexport interface ImportedObservation {\n biomarkerCode: string;\n biomarkerName: string;\n collectionDate: string;\n flag: 'H' | 'L' | '';\n isQualitative: boolean;\n /** Ausente nos biomarcadores sem LOINC publicado, como composição corporal. */\n loincCode?: string;\n referenceMax?: number;\n referenceMin?: number;\n unit: string;\n value: number | string;\n}\n\nexport interface SkippedEntry {\n index: number;\n loincCode?: string;\n reason: string;\n resourceType?: string;\n}\n\nexport interface ImportError {\n details: string;\n field: string;\n}\n\nexport interface FHIRImportResult {\n errors: ImportError[];\n imported: ImportedObservation[];\n skipped: SkippedEntry[];\n totalProcessed: number;\n}\n\n/**\n * Limites de importação.\n *\n * Uma Observation exportada ocupa cerca de 1,25KB em JSON compacto e 2,75KB\n * quando o arquivo vem indentado, medido sobre um histórico real de 998\n * Observations em 61 laudos. Nesse tamanho, 5000 Observations dão 6,0MB\n * compactos ou 13,1MB indentados, e por isso o teto de arquivo é 15MB: cobre\n * as duas formas com folga.\n *\n * Na densidade desse mesmo histórico (16 Observations por laudo), 5000\n * equivalem a cerca de 300 laudos.\n */\nconst MAX_OBSERVATIONS = 5000;\nconst MAX_FILE_SIZE = 15 * 1024 * 1024; // 15MB\n\n/**\n * Resolve o código interno do biomarcador a partir do `code.coding`.\n *\n * LOINC primeiro, que é o vocabulário que arquivos de terceiros usam. Quando\n * não resolve, cai para o coding de códigos internos, presente nos arquivos\n * exportados pela própria plataforma.\n *\n * O fallback cobre dois casos: biomarcadores sem LOINC publicado (composição\n * corporal, densidade óssea, escore de cálcio) e arquivos antigos, exportados\n * quando esses biomarcadores saíam com o placeholder `99999-9`, que não\n * resolve para nada.\n */\nfunction resolveBiomarkerCode(observation: FHIRObservation): {\n internalCode?: string;\n loincCode?: string;\n reason: string;\n} {\n const coding = observation.code?.coding ?? [];\n const loincCode = coding.find((c) => c.system === LOINC_SYSTEM)?.code;\n const declaredCode = coding.find((c) => c.system === BIOMARKER_CODE_SYSTEM)?.code;\n\n const seenCodes = [\n ...(loincCode ? [`LOINC ${loincCode}`] : []),\n ...(declaredCode ? [`biomarker code ${declaredCode}`] : []),\n ];\n\n // Três motivos distintos de descarte, que antes se confundiam num só. Sem\n // essa separação, um arquivo em SNOMED relatava \"nenhum código encontrado\",\n // sugerindo `coding` vazio quando na verdade o código existia e estava num\n // system que não tratamos. Para importação de terceiros, é a diferença entre\n // um diagnóstico acionável e um enigma.\n let reason: string;\n if (seenCodes.length > 0) {\n reason = `Unknown code: ${seenCodes.join(', ')}`;\n } else if (coding.length > 0) {\n const systems = [...new Set(coding.map((c) => c.system ?? '(sem system)'))];\n reason = `No code in a supported system (found: ${systems.join(', ')})`;\n } else {\n reason = 'No code found in observation coding';\n }\n\n const fromLoinc = loincCode ? loincToCode(loincCode) : undefined;\n if (fromLoinc) return { internalCode: fromLoinc, loincCode, reason };\n\n if (declaredCode && isValidCode(declaredCode)) {\n // `isValidCode` aceita alias, mas alias não serve como código armazenado:\n // 49 definições têm um, e tanto `codeToLoinc` quanto as faixas de\n // referência são indexadas só pelo canônico. Sem normalizar, `VLDL_Cholesterol`\n // entraria no lugar de `VLDL` e perderia o LOINC 13458-5 que ele tem.\n // Importar um Bundle é fronteira de dados, que é onde `normalizeCode` deve\n // ser aplicado.\n const canonical = normalizeCode(declaredCode);\n\n // `codeToLoinc` devolve undefined para quem não tem LOINC, que é o caso\n // esperado aqui. O campo fica de fora em vez de receber um valor inventado.\n return { internalCode: canonical, loincCode: codeToLoinc(canonical), reason };\n }\n\n return { loincCode, reason };\n}\n\n/**\n * Extract interpretation flag from Observation\n */\nfunction extractFlag(observation: FHIRObservation): 'H' | 'L' | '' {\n const code = observation.interpretation?.[0]?.coding?.[0]?.code;\n if (code === 'H' || code === 'HH') return 'H';\n if (code === 'L' || code === 'LL') return 'L';\n return '';\n}\n\n/**\n * Extract Observation resources from a FHIR Bundle\n */\nexport function extractObservationsFromBundle(bundle: FHIRBundle): {\n observations: FHIRObservation[];\n skipped: SkippedEntry[];\n} {\n const observations: FHIRObservation[] = [];\n const skipped: SkippedEntry[] = [];\n\n for (let i = 0; i < bundle.entry.length; i++) {\n const entry = bundle.entry[i]!;\n if (!entry.resource) {\n skipped.push({ index: i, reason: 'Entry has no resource' });\n continue;\n }\n\n if (entry.resource.resourceType !== 'Observation') {\n // Non-observation resources are silently skipped (Patient, DiagnosticReport, etc.)\n continue;\n }\n\n if (observations.length >= MAX_OBSERVATIONS) {\n skipped.push({ index: i, reason: `Maximum of ${MAX_OBSERVATIONS} observations exceeded` });\n continue;\n }\n\n observations.push(entry.resource as FHIRObservation);\n }\n\n return { observations, skipped };\n}\n\n/**\n * Map a FHIR Observation to internal format using LOINC→biomarker code lookup\n */\nexport function mapFHIRObservationToInternal(\n observation: FHIRObservation,\n index: number,\n): { observation: ImportedObservation } | { skipped: SkippedEntry } {\n const { internalCode, loincCode, reason } = resolveBiomarkerCode(observation);\n\n if (!internalCode) {\n return {\n skipped: { index, loincCode, reason, resourceType: 'Observation' },\n };\n }\n\n const definition = getDefinitionByCode(internalCode);\n\n // Extract value\n let value: number | string;\n let unit = '';\n let isQualitative = false;\n\n if (observation.valueQuantity?.value !== undefined) {\n value = observation.valueQuantity.value;\n unit = observation.valueQuantity.unit || observation.valueQuantity.code || '';\n } else if (observation.valueString) {\n value = observation.valueString;\n isQualitative = true;\n } else {\n return {\n skipped: {\n index,\n loincCode,\n reason: 'Observation has no value (valueQuantity or valueString)',\n resourceType: 'Observation',\n },\n };\n }\n\n // Extract collection date (effectiveDateTime or effectivePeriod.start)\n const collectionDate = observation.effectiveDateTime || observation.effectivePeriod?.start || '';\n if (!collectionDate) {\n return {\n skipped: {\n index,\n loincCode,\n reason: 'Observation has no effectiveDateTime or effectivePeriod.start',\n resourceType: 'Observation',\n },\n };\n }\n\n // Extract reference ranges\n let referenceMin: number | undefined;\n let referenceMax: number | undefined;\n if (observation.referenceRange?.[0]) {\n referenceMin = observation.referenceRange[0].low?.value;\n referenceMax = observation.referenceRange[0].high?.value;\n }\n\n const imported: ImportedObservation = {\n biomarkerCode: internalCode,\n biomarkerName:\n definition?.names.pt[0] || definition?.names.en[0] || observation.code.text || internalCode,\n collectionDate,\n flag: extractFlag(observation),\n isQualitative,\n loincCode,\n referenceMax,\n referenceMin,\n unit: unit || definition?.unit || '',\n value,\n };\n\n return { observation: imported };\n}\n\n/**\n * Process a complete FHIR Bundle for import\n */\nexport function processImportBundle(data: unknown): FHIRImportResult {\n // Structural validation\n const validationErrors = validateFHIRImportBundle(data);\n if (validationErrors.length > 0) {\n return {\n errors: validationErrors,\n imported: [],\n skipped: [],\n totalProcessed: 0,\n };\n }\n\n const bundle = data as FHIRBundle;\n\n // Extract observations\n const { observations, skipped } = extractObservationsFromBundle(bundle);\n\n // Map each observation to internal format\n const imported: ImportedObservation[] = [];\n const allSkipped: SkippedEntry[] = [...skipped];\n\n for (let i = 0; i < observations.length; i++) {\n const result = mapFHIRObservationToInternal(observations[i]!, i);\n\n if ('observation' in result) {\n imported.push(result.observation);\n } else {\n allSkipped.push(result.skipped);\n }\n }\n\n return {\n errors: [],\n imported,\n skipped: allSkipped,\n totalProcessed: observations.length,\n };\n}\n\nexport { MAX_FILE_SIZE, MAX_OBSERVATIONS };\n"]}
|
|
@@ -8,7 +8,7 @@ import {
|
|
|
8
8
|
isValidCode,
|
|
9
9
|
loincToCode,
|
|
10
10
|
normalizeCode
|
|
11
|
-
} from "./chunk-
|
|
11
|
+
} from "./chunk-7C6N2GM6.js";
|
|
12
12
|
import {
|
|
13
13
|
validateFHIRImportBundle
|
|
14
14
|
} from "./chunk-N3ZCOLG2.js";
|
|
@@ -162,4 +162,4 @@ export {
|
|
|
162
162
|
mapFHIRObservationToInternal,
|
|
163
163
|
processImportBundle
|
|
164
164
|
};
|
|
165
|
-
//# sourceMappingURL=chunk-
|
|
165
|
+
//# sourceMappingURL=chunk-SVVFCRFK.js.map
|
package/dist/cli.js
CHANGED
|
@@ -1255,7 +1255,14 @@ var BIOMARKER_DEFINITIONS = [
|
|
|
1255
1255
|
loinc: "1742-6",
|
|
1256
1256
|
names: {
|
|
1257
1257
|
en: ["Alanine Transaminase", "ALT", "SGPT"],
|
|
1258
|
-
pt: [
|
|
1258
|
+
pt: [
|
|
1259
|
+
"Alanina Aminotransferase",
|
|
1260
|
+
"ALT",
|
|
1261
|
+
"TGP",
|
|
1262
|
+
"Transaminase Glut\xE2mico-Pir\xFAvica",
|
|
1263
|
+
"Transaminase Pir\xFAvica",
|
|
1264
|
+
"TGP/ALT"
|
|
1265
|
+
]
|
|
1259
1266
|
},
|
|
1260
1267
|
unit: "U/L"
|
|
1261
1268
|
},
|
|
@@ -1296,7 +1303,14 @@ var BIOMARKER_DEFINITIONS = [
|
|
|
1296
1303
|
loinc: "1920-8",
|
|
1297
1304
|
names: {
|
|
1298
1305
|
en: ["Aspartate Aminotransferase", "AST", "SGOT"],
|
|
1299
|
-
pt: [
|
|
1306
|
+
pt: [
|
|
1307
|
+
"Aspartato Aminotransferase",
|
|
1308
|
+
"AST",
|
|
1309
|
+
"TGO",
|
|
1310
|
+
"Transaminase Glut\xE2mico-Oxalac\xE9tica",
|
|
1311
|
+
"Transaminase Oxalac\xE9tica",
|
|
1312
|
+
"TGO/AST"
|
|
1313
|
+
]
|
|
1300
1314
|
},
|
|
1301
1315
|
unit: "U/L"
|
|
1302
1316
|
},
|
|
@@ -1306,7 +1320,7 @@ var BIOMARKER_DEFINITIONS = [
|
|
|
1306
1320
|
loinc: "2324-2",
|
|
1307
1321
|
names: {
|
|
1308
1322
|
en: ["Gamma-glutamyl Transferase", "GGT", "Gamma GT"],
|
|
1309
|
-
pt: ["Gama-Glutamil Transferase", "GGT", "Gama GT"]
|
|
1323
|
+
pt: ["Gama-Glutamil Transferase", "GGT", "Gama GT", "Gama Glutamiltransferase", "Gama-GT"]
|
|
1310
1324
|
},
|
|
1311
1325
|
unit: "U/L"
|
|
1312
1326
|
},
|
|
@@ -1451,7 +1465,11 @@ var BIOMARKER_DEFINITIONS = [
|
|
|
1451
1465
|
loinc: "788-0",
|
|
1452
1466
|
names: {
|
|
1453
1467
|
en: ["Red Cell Distribution Width", "RDW"],
|
|
1454
|
-
pt: [
|
|
1468
|
+
pt: [
|
|
1469
|
+
"Amplitude de Distribui\xE7\xE3o dos Eritr\xF3citos",
|
|
1470
|
+
"RDW",
|
|
1471
|
+
"Coeficiente de Varia\xE7\xE3o do Volume Eritrocit\xE1rio"
|
|
1472
|
+
]
|
|
1455
1473
|
},
|
|
1456
1474
|
unit: "%"
|
|
1457
1475
|
},
|
|
@@ -6684,7 +6702,7 @@ async function main() {
|
|
|
6684
6702
|
strict: false
|
|
6685
6703
|
});
|
|
6686
6704
|
if (values.version) {
|
|
6687
|
-
process.stdout.write(`${"0.
|
|
6705
|
+
process.stdout.write(`${"0.25.0"}
|
|
6688
6706
|
`);
|
|
6689
6707
|
return;
|
|
6690
6708
|
}
|
package/dist/converter.cjs
CHANGED
|
@@ -3,14 +3,14 @@
|
|
|
3
3
|
|
|
4
4
|
|
|
5
5
|
|
|
6
|
-
var
|
|
6
|
+
var _chunkKFZBWFQDcjs = require('./chunk-KFZBWFQD.cjs');
|
|
7
7
|
require('./chunk-OR67NJDZ.cjs');
|
|
8
|
-
require('./chunk-
|
|
8
|
+
require('./chunk-GYCNMOSA.cjs');
|
|
9
9
|
require('./chunk-MJ254F5K.cjs');
|
|
10
10
|
|
|
11
11
|
|
|
12
12
|
|
|
13
13
|
|
|
14
14
|
|
|
15
|
-
exports.labObservationToFHIR =
|
|
15
|
+
exports.labObservationToFHIR = _chunkKFZBWFQDcjs.labObservationToFHIR; exports.labReportToFHIR = _chunkKFZBWFQDcjs.labReportToFHIR; exports.labResultToFHIRBundle = _chunkKFZBWFQDcjs.labResultToFHIRBundle; exports.userProfileToFHIR = _chunkKFZBWFQDcjs.userProfileToFHIR;
|
|
16
16
|
//# sourceMappingURL=converter.cjs.map
|
package/dist/converter.js
CHANGED
|
@@ -3,9 +3,9 @@ import {
|
|
|
3
3
|
labReportToFHIR,
|
|
4
4
|
labResultToFHIRBundle,
|
|
5
5
|
userProfileToFHIR
|
|
6
|
-
} from "./chunk-
|
|
6
|
+
} from "./chunk-H74QZC4Z.js";
|
|
7
7
|
import "./chunk-A6HR4XDK.js";
|
|
8
|
-
import "./chunk-
|
|
8
|
+
import "./chunk-7C6N2GM6.js";
|
|
9
9
|
import "./chunk-R4MUCMO3.js";
|
|
10
10
|
export {
|
|
11
11
|
labObservationToFHIR,
|
package/dist/importer.cjs
CHANGED
|
@@ -4,9 +4,9 @@
|
|
|
4
4
|
|
|
5
5
|
|
|
6
6
|
|
|
7
|
-
var
|
|
7
|
+
var _chunkPTFZQ4LKcjs = require('./chunk-PTFZQ4LK.cjs');
|
|
8
8
|
require('./chunk-OR67NJDZ.cjs');
|
|
9
|
-
require('./chunk-
|
|
9
|
+
require('./chunk-GYCNMOSA.cjs');
|
|
10
10
|
require('./chunk-3ILBFLVQ.cjs');
|
|
11
11
|
|
|
12
12
|
|
|
@@ -14,5 +14,5 @@ require('./chunk-3ILBFLVQ.cjs');
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
|
|
17
|
-
exports.MAX_FILE_SIZE =
|
|
17
|
+
exports.MAX_FILE_SIZE = _chunkPTFZQ4LKcjs.MAX_FILE_SIZE; exports.MAX_OBSERVATIONS = _chunkPTFZQ4LKcjs.MAX_OBSERVATIONS; exports.extractObservationsFromBundle = _chunkPTFZQ4LKcjs.extractObservationsFromBundle; exports.mapFHIRObservationToInternal = _chunkPTFZQ4LKcjs.mapFHIRObservationToInternal; exports.processImportBundle = _chunkPTFZQ4LKcjs.processImportBundle;
|
|
18
18
|
//# sourceMappingURL=importer.cjs.map
|
package/dist/importer.js
CHANGED
|
@@ -4,9 +4,9 @@ import {
|
|
|
4
4
|
extractObservationsFromBundle,
|
|
5
5
|
mapFHIRObservationToInternal,
|
|
6
6
|
processImportBundle
|
|
7
|
-
} from "./chunk-
|
|
7
|
+
} from "./chunk-SVVFCRFK.js";
|
|
8
8
|
import "./chunk-A6HR4XDK.js";
|
|
9
|
-
import "./chunk-
|
|
9
|
+
import "./chunk-7C6N2GM6.js";
|
|
10
10
|
import "./chunk-N3ZCOLG2.js";
|
|
11
11
|
export {
|
|
12
12
|
MAX_FILE_SIZE,
|
package/dist/index.cjs
CHANGED
|
@@ -5,14 +5,14 @@
|
|
|
5
5
|
|
|
6
6
|
|
|
7
7
|
|
|
8
|
-
var
|
|
8
|
+
var _chunkKFZBWFQDcjs = require('./chunk-KFZBWFQD.cjs');
|
|
9
9
|
|
|
10
10
|
|
|
11
11
|
|
|
12
12
|
|
|
13
13
|
|
|
14
14
|
|
|
15
|
-
var
|
|
15
|
+
var _chunkPTFZQ4LKcjs = require('./chunk-PTFZQ4LK.cjs');
|
|
16
16
|
|
|
17
17
|
|
|
18
18
|
|
|
@@ -49,7 +49,7 @@ var _chunkOR67NJDZcjs = require('./chunk-OR67NJDZ.cjs');
|
|
|
49
49
|
|
|
50
50
|
|
|
51
51
|
|
|
52
|
-
var
|
|
52
|
+
var _chunkGYCNMOSAcjs = require('./chunk-GYCNMOSA.cjs');
|
|
53
53
|
|
|
54
54
|
|
|
55
55
|
|
|
@@ -234,14 +234,14 @@ function interventionToFHIRObservation(intervention, patientId) {
|
|
|
234
234
|
}
|
|
235
235
|
function interventionsToFHIRBundle(interventions, userProfile) {
|
|
236
236
|
const patientId = userProfile.userId;
|
|
237
|
-
const fhirPatient =
|
|
237
|
+
const fhirPatient = _chunkKFZBWFQDcjs.userProfileToFHIR.call(void 0, userProfile);
|
|
238
238
|
const entries = interventions.map((intervention) => {
|
|
239
239
|
const isMedication = intervention.type === "medication" || intervention.type === "supplement";
|
|
240
240
|
const resource = isMedication ? interventionToFHIRMedicationStatement(intervention, patientId) : interventionToFHIRObservation(intervention, patientId);
|
|
241
|
-
return { fullUrl:
|
|
241
|
+
return { fullUrl: _chunkKFZBWFQDcjs.entryFullUrl.call(void 0, resource), resource };
|
|
242
242
|
});
|
|
243
243
|
return {
|
|
244
|
-
entry: [{ fullUrl:
|
|
244
|
+
entry: [{ fullUrl: _chunkKFZBWFQDcjs.entryFullUrl.call(void 0, fhirPatient), resource: fhirPatient }, ...entries],
|
|
245
245
|
resourceType: "Bundle",
|
|
246
246
|
type: "collection"
|
|
247
247
|
};
|
|
@@ -716,5 +716,5 @@ var specimenTypeCoding = (text) => BY_NORMALIZED_TEXT.get(normalize(text));
|
|
|
716
716
|
|
|
717
717
|
|
|
718
718
|
|
|
719
|
-
exports.AGE_BRACKETS = AGE_BRACKETS; exports.BIOMARKER_CODE_SYSTEM = _chunkOR67NJDZcjs.BIOMARKER_CODE_SYSTEM; exports.BIOMARKER_DEFAULT_UNIT = _chunkMJ254F5Kcjs.BIOMARKER_DEFAULT_UNIT; exports.BIOMARKER_DEFINITIONS =
|
|
719
|
+
exports.AGE_BRACKETS = AGE_BRACKETS; exports.BIOMARKER_CODE_SYSTEM = _chunkOR67NJDZcjs.BIOMARKER_CODE_SYSTEM; exports.BIOMARKER_DEFAULT_UNIT = _chunkMJ254F5Kcjs.BIOMARKER_DEFAULT_UNIT; exports.BIOMARKER_DEFINITIONS = _chunkGYCNMOSAcjs.BIOMARKER_DEFINITIONS; exports.BIOMARKER_UNITS = _chunkMJ254F5Kcjs.BIOMARKER_UNITS; exports.BODY_FAT_ZONES = BODY_FAT_ZONES; exports.BR_TIPO_AMOSTRA_VALUESET = BR_TIPO_AMOSTRA_VALUESET; exports.BUNDLE_BASE_URL = _chunkKFZBWFQDcjs.BUNDLE_BASE_URL; exports.CAC_INDICATOR_CODES = _chunkGYCNMOSAcjs.CAC_INDICATOR_CODES; exports.CATEGORY_GROUPS = CATEGORY_GROUPS; exports.CATEGORY_SCREENING_INTERVALS = CATEGORY_SCREENING_INTERVALS; exports.DEXA_CATEGORIES = _chunkGYCNMOSAcjs.DEXA_CATEGORIES; exports.DEXA_INDICATOR_CODES = _chunkGYCNMOSAcjs.DEXA_INDICATOR_CODES; exports.HL7_SPECIMEN_TYPE_SYSTEM = HL7_SPECIMEN_TYPE_SYSTEM; exports.LOINC_SYSTEM = _chunkOR67NJDZcjs.LOINC_SYSTEM; exports.MAX_FILE_SIZE = _chunkPTFZQ4LKcjs.MAX_FILE_SIZE; exports.MAX_OBSERVATIONS = _chunkPTFZQ4LKcjs.MAX_OBSERVATIONS; exports.T_SCORE_ZONES = T_SCORE_ZONES; exports.UNIT_TO_UCUM = _chunkMJ254F5Kcjs.UNIT_TO_UCUM; exports.ZONE_DEFS = ZONE_DEFS; exports.applyFallbackReferenceRanges = _chunkERALICUKcjs.applyFallbackReferenceRanges; exports.biomarkerRangeDefinitions = _chunkERALICUKcjs.biomarkerRangeDefinitions; exports.calculateNextScreeningDate = calculateNextScreeningDate; exports.cnsToFHIRIdentifier = cnsToFHIRIdentifier; exports.codeToLoinc = _chunkGYCNMOSAcjs.codeToLoinc; exports.convertUnit = _chunkMJ254F5Kcjs.convertUnit; exports.cpfToFHIRIdentifier = cpfToFHIRIdentifier; exports.defaultReferenceRanges = _chunkERALICUKcjs.defaultReferenceRanges; exports.entryFullUrl = _chunkKFZBWFQDcjs.entryFullUrl; exports.extractObservationsFromBundle = _chunkPTFZQ4LKcjs.extractObservationsFromBundle; exports.filterVisibleBiomarkers = _chunkGYCNMOSAcjs.filterVisibleBiomarkers; exports.findCodeByName = _chunkGYCNMOSAcjs.findCodeByName; exports.formatCNS = formatCNS; exports.formatCPF = formatCPF; exports.generateCacFullReference = _chunkGYCNMOSAcjs.generateCacFullReference; exports.generateDexaFullReference = _chunkGYCNMOSAcjs.generateDexaFullReference; exports.generateFilteredLLMReference = _chunkGYCNMOSAcjs.generateFilteredLLMReference; exports.generateLLMReference = _chunkGYCNMOSAcjs.generateLLMReference; exports.getAllCodes = _chunkGYCNMOSAcjs.getAllCodes; exports.getAllDefinitions = _chunkGYCNMOSAcjs.getAllDefinitions; exports.getAllLoincCodes = _chunkGYCNMOSAcjs.getAllLoincCodes; exports.getAllSearchPatterns = _chunkGYCNMOSAcjs.getAllSearchPatterns; exports.getBiomarkersByCategory = _chunkGYCNMOSAcjs.getBiomarkersByCategory; exports.getBiomarkersForCategories = _chunkGYCNMOSAcjs.getBiomarkersForCategories; exports.getCanonicalUnit = _chunkMJ254F5Kcjs.getCanonicalUnit; exports.getCategoriesByInterval = getCategoriesByInterval; exports.getCategoryGroup = getCategoryGroup; exports.getDaysUntilScreening = getDaysUntilScreening; exports.getDefaultUnit = _chunkMJ254F5Kcjs.getDefaultUnit; exports.getDefinitionByCode = _chunkGYCNMOSAcjs.getDefinitionByCode; exports.getDefinitionByLoinc = _chunkGYCNMOSAcjs.getDefinitionByLoinc; exports.getDefinitionsBySex = _chunkGYCNMOSAcjs.getDefinitionsBySex; exports.getDueCategories = getDueCategories; exports.getFallbackReferenceRange = _chunkERALICUKcjs.getFallbackReferenceRange; exports.getRangeDirection = _chunkERALICUKcjs.getRangeDirection; exports.getReferenceRange = _chunkERALICUKcjs.getReferenceRange; exports.getSIUnit = _chunkMJ254F5Kcjs.getSIUnit; exports.getScreeningInterval = getScreeningInterval; exports.getSexForCode = _chunkGYCNMOSAcjs.getSexForCode; exports.getVisibleDefinitions = _chunkGYCNMOSAcjs.getVisibleDefinitions; exports.interventionToFHIRMedicationStatement = interventionToFHIRMedicationStatement; exports.interventionToFHIRObservation = interventionToFHIRObservation; exports.interventionsToFHIRBundle = interventionsToFHIRBundle; exports.isBiomarkerVisible = _chunkGYCNMOSAcjs.isBiomarkerVisible; exports.isCacDocument = _chunkGYCNMOSAcjs.isCacDocument; exports.isDexaDocument = _chunkGYCNMOSAcjs.isDexaDocument; exports.isScreeningDue = isScreeningDue; exports.isValidCode = _chunkGYCNMOSAcjs.isValidCode; exports.isValidLoinc = _chunkGYCNMOSAcjs.isValidLoinc; exports.labObservationToFHIR = _chunkKFZBWFQDcjs.labObservationToFHIR; exports.labReportToFHIR = _chunkKFZBWFQDcjs.labReportToFHIR; exports.labResultToFHIRBundle = _chunkKFZBWFQDcjs.labResultToFHIRBundle; exports.listMappedSubcategories = listMappedSubcategories; exports.loincToCode = _chunkGYCNMOSAcjs.loincToCode; exports.mapFHIRObservationToInternal = _chunkPTFZQ4LKcjs.mapFHIRObservationToInternal; exports.normalizeCode = _chunkGYCNMOSAcjs.normalizeCode; exports.plural = plural; exports.pluralCount = pluralCount; exports.pluralPhrase = pluralPhrase; exports.pluralPhraseCount = pluralPhraseCount; exports.processImportBundle = _chunkPTFZQ4LKcjs.processImportBundle; exports.specimenTypeCoding = specimenTypeCoding; exports.toBiomarkerTests = _chunkGYCNMOSAcjs.toBiomarkerTests; exports.unitToUCUM = _chunkMJ254F5Kcjs.unitToUCUM; exports.userProfileToFHIR = _chunkKFZBWFQDcjs.userProfileToFHIR; exports.validateCNS = validateCNS; exports.validateCPF = validateCPF; exports.validateFHIRDiagnosticReport = _chunk3ILBFLVQcjs.validateFHIRDiagnosticReport; exports.validateFHIRImportBundle = _chunk3ILBFLVQcjs.validateFHIRImportBundle; exports.validateFHIRObservation = _chunk3ILBFLVQcjs.validateFHIRObservation; exports.validateLoincNameMatch = _chunkGYCNMOSAcjs.validateLoincNameMatch;
|
|
720
720
|
//# sourceMappingURL=index.cjs.map
|
package/dist/index.js
CHANGED
|
@@ -5,14 +5,14 @@ import {
|
|
|
5
5
|
labReportToFHIR,
|
|
6
6
|
labResultToFHIRBundle,
|
|
7
7
|
userProfileToFHIR
|
|
8
|
-
} from "./chunk-
|
|
8
|
+
} from "./chunk-H74QZC4Z.js";
|
|
9
9
|
import {
|
|
10
10
|
MAX_FILE_SIZE,
|
|
11
11
|
MAX_OBSERVATIONS,
|
|
12
12
|
extractObservationsFromBundle,
|
|
13
13
|
mapFHIRObservationToInternal,
|
|
14
14
|
processImportBundle
|
|
15
|
-
} from "./chunk-
|
|
15
|
+
} from "./chunk-SVVFCRFK.js";
|
|
16
16
|
import {
|
|
17
17
|
BIOMARKER_CODE_SYSTEM,
|
|
18
18
|
LOINC_SYSTEM
|
|
@@ -49,7 +49,7 @@ import {
|
|
|
49
49
|
normalizeCode,
|
|
50
50
|
toBiomarkerTests,
|
|
51
51
|
validateLoincNameMatch
|
|
52
|
-
} from "./chunk-
|
|
52
|
+
} from "./chunk-7C6N2GM6.js";
|
|
53
53
|
import {
|
|
54
54
|
applyFallbackReferenceRanges,
|
|
55
55
|
biomarkerRangeDefinitions,
|
package/package.json
CHANGED