@precisa-saude/fhir 0.21.1 → 0.22.0
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/biomarkers.cjs +2 -2
- package/dist/biomarkers.js +1 -1
- package/dist/{chunk-SJJRJT64.cjs → chunk-6WXSJGXF.cjs} +43 -2
- package/dist/chunk-6WXSJGXF.cjs.map +1 -0
- package/dist/{chunk-IGS6TWJU.cjs → chunk-AWO3PYPJ.cjs} +7 -7
- package/dist/{chunk-IGS6TWJU.cjs.map → chunk-AWO3PYPJ.cjs.map} +1 -1
- package/dist/{chunk-6EAXNJAN.js → chunk-BN4XL2PL.js} +43 -2
- package/dist/chunk-BN4XL2PL.js.map +1 -0
- package/dist/{chunk-DZZKR2XS.js → chunk-MRAMTSD4.js} +2 -2
- package/dist/{chunk-OP6MZT45.js → chunk-YF3262UR.js} +2 -2
- package/dist/{chunk-YUUEXKQQ.cjs → chunk-YGPGNIXK.cjs} +3 -3
- package/dist/{chunk-YUUEXKQQ.cjs.map → chunk-YGPGNIXK.cjs.map} +1 -1
- package/dist/cli.js +43 -2
- package/dist/converter.cjs +3 -3
- package/dist/converter.js +2 -2
- package/dist/importer.cjs +3 -3
- package/dist/importer.js +2 -2
- package/dist/index.cjs +5 -5
- package/dist/index.js +3 -3
- package/package.json +1 -1
- package/dist/chunk-6EAXNJAN.js.map +0 -1
- package/dist/chunk-SJJRJT64.cjs.map +0 -1
- /package/dist/{chunk-DZZKR2XS.js.map → chunk-MRAMTSD4.js.map} +0 -0
- /package/dist/{chunk-OP6MZT45.js.map → chunk-YF3262UR.js.map} +0 -0
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isValidCode,
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} from "./chunk-
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} from "./chunk-BN4XL2PL.js";
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import {
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} from "./chunk-N3ZCOLG2.js";
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mapFHIRObservationToInternal,
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processImportBundle
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//# sourceMappingURL=chunk-
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//# sourceMappingURL=chunk-MRAMTSD4.js.map
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import {
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import {
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unitToUCUM
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userProfileToFHIR,
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labResultToFHIRBundle
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};
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//# sourceMappingURL=chunk-YF3262UR.js.map
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var _chunkOR67NJDZcjs = require('./chunk-OR67NJDZ.cjs');
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var _chunk6WXSJGXFcjs = require('./chunk-6WXSJGXF.cjs');
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}
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function labObservationToFHIR(observation, patientId, laboratoryName) {
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const loincCode =
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const loincCode = _chunk6WXSJGXFcjs.codeToLoinc.call(void 0, observation.biomarkerCode);
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const sourceUnit = observation.unit || _chunkMJ254F5Kcjs.getDefaultUnit.call(void 0, observation.biomarkerCode) || observation.unit;
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const ucumUnit = _chunkMJ254F5Kcjs.unitToUCUM.call(void 0, sourceUnit);
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const isQualitative = observation.isQualitative || typeof observation.value === "string";
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exports.labObservationToFHIR = labObservationToFHIR; exports.labReportToFHIR = labReportToFHIR; exports.userProfileToFHIR = userProfileToFHIR; exports.labResultToFHIRBundle = labResultToFHIRBundle;
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//# sourceMappingURL=chunk-YGPGNIXK.cjs.map
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// High\n case 'L':\n return 'L'; // Low\n default:\n return 'N'; // Normal\n }\n}\n\n/**\n * Convert Flag to FHIR interpretation display\n */\nfunction interpretationDisplay(flag: Flag): string {\n switch (flag) {\n case 'H':\n return 'High';\n case 'L':\n return 'Low';\n default:\n return 'Normal';\n }\n}\n\n/**\n * Convert generic lab observation to FHIR Observation\n */\nexport function labObservationToFHIR(\n observation: LabObservationData,\n patientId: string,\n laboratoryName?: string,\n): FHIRObservation {\n const loincCode = codeToLoinc(observation.biomarkerCode);\n // Use default unit if source unit is empty\n const sourceUnit =\n observation.unit || getDefaultUnit(observation.biomarkerCode) || observation.unit;\n const ucumUnit = unitToUCUM(sourceUnit);\n const isQualitative = observation.isQualitative || typeof observation.value === 'string';\n\n // Base observation structure\n const fhirObs: FHIRObservation = {\n category: [\n {\n coding: [\n {\n code: 'laboratory',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/observation-category',\n },\n ],\n },\n ],\n code: {\n // Sem LOINC, o coding LOINC simplesmente não sai. Antes ia `99999-9`,\n // que não é código LOINC nenhum: publicava sob `http://loinc.org` uma\n // afirmação falsa, e quem consumisse o bundle confiando no system\n // trataria aquilo como código de verdade. Composição corporal, densidade\n // óssea e escore de cálcio não têm LOINC, e o certo é a lacuna explícita.\n coding: [\n ...(loincCode\n ? [\n {\n code: loincCode,\n display: observation.biomarkerName,\n system: LOINC_SYSTEM,\n },\n ]\n : []),\n {\n code: observation.biomarkerCode,\n display: observation.biomarkerName,\n system: BIOMARKER_CODE_SYSTEM,\n },\n ],\n text: observation.biomarkerName,\n },\n effectiveDateTime: observation.collectionDate,\n id: `${observation.reportId}-${observation.biomarkerCode}`,\n interpretation: [\n {\n coding: [\n {\n code: interpretationCode(observation.flag),\n display: interpretationDisplay(observation.flag),\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ],\n performer: laboratoryName ? [{ display: laboratoryName }] : undefined,\n resourceType: 'Observation',\n status: 'final',\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n\n // Add value based on type (qualitative = string, quantitative = number)\n if (isQualitative) {\n fhirObs.valueString = String(observation.value);\n } else {\n fhirObs.valueQuantity = {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.value as number,\n };\n\n // Reference range only applies to quantitative values\n if (observation.referenceMin !== undefined && observation.referenceMax !== undefined) {\n fhirObs.referenceRange = [\n {\n high: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMax,\n },\n low: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMin,\n },\n },\n ];\n }\n }\n\n return fhirObs;\n}\n\n/**\n * Convert generic lab report to FHIR DiagnosticReport\n */\nexport function labReportToFHIR(\n report: LabReportData,\n patientId: string,\n observationIds: string[],\n): FHIRDiagnosticReport {\n // Map processing status to FHIR status\n let status: FHIRDiagnosticReport['status'];\n switch (report.processingStatus) {\n case 'complete':\n status = 'final';\n break;\n case 'partial':\n status = 'partial';\n break;\n case 'pending_review':\n status = 'preliminary';\n break;\n default:\n status = 'final';\n }\n\n return {\n category: [\n {\n coding: [\n {\n code: 'LAB',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/v2-0074',\n },\n ],\n },\n ],\n code: {\n coding: [\n {\n code: '11502-2', // Laboratory report\n display: 'Laboratory report',\n system: 'http://loinc.org',\n },\n ],\n text: 'Laboratory Results',\n },\n conclusion:\n report.overallStatus === 'NORMAL'\n ? 'All results within normal limits'\n : 'One or more abnormal results detected',\n conclusionCode:\n report.overallStatus === 'ANORMAL'\n ? [\n {\n coding: [\n {\n code: 'A',\n display: 'Abnormal',\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ]\n : undefined,\n effectiveDateTime: report.collectionDate,\n id: report.reportId,\n issued: report.createdAt,\n performer: report.laboratoryName ? [{ display: report.laboratoryName }] : undefined,\n resourceType: 'DiagnosticReport',\n result: observationIds.map((id) => ({ reference: `Observation/${id}` })),\n status,\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n}\n\n/**\n * Convert user profile to FHIR Patient\n * NOTE: CPF is intentionally excluded for privacy (LGPD compliance)\n */\nexport function userProfileToFHIR(profile: UserProfileData): FHIRPatient {\n const nameParts = profile.name.split(' ');\n const given = nameParts.slice(0, -1);\n const family = nameParts[nameParts.length - 1] || '';\n\n return {\n address: profile.address\n ? [\n {\n city: profile.address.city,\n country: profile.address.country || 'BR',\n line: [\n profile.address.street && profile.address.number\n ? `${profile.address.street}, ${profile.address.number}`\n : profile.address.street,\n profile.address.complement,\n ].filter(Boolean) as string[],\n postalCode: profile.address.postalCode,\n state: profile.address.state,\n },\n ]\n : undefined,\n birthDate: profile.birthDate,\n gender: profile.gender,\n id: profile.userId,\n name: [\n {\n family,\n given: given.length > 0 ? given : undefined,\n text: profile.name,\n },\n ],\n resourceType: 'Patient',\n telecom:\n [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ].length > 0\n ? [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ]\n : undefined,\n };\n}\n\n/**\n * Convert complete lab result to FHIR Bundle\n * This is the main function for exporting lab results to FHIR R4 format\n */\nexport function labResultToFHIRBundle(\n report: LabReportData,\n observations: LabObservationData[],\n userProfile: UserProfileData,\n): FHIRBundle {\n const patientId = userProfile.userId;\n\n // Convert observations\n const fhirObservations = observations.map((obs) => ({\n fullUrl: `urn:uuid:observation-${obs.reportId}-${obs.biomarkerCode}`,\n resource: labObservationToFHIR(\n { ...obs, collectionDate: report.collectionDate },\n patientId,\n report.laboratoryName,\n ),\n }));\n\n const observationIds = observations.map(\n (obs) => `observation-${obs.reportId}-${obs.biomarkerCode}`,\n );\n\n // Convert report\n const diagnosticReport = labReportToFHIR(report, patientId, observationIds);\n\n // Convert patient\n const fhirPatient = userProfileToFHIR(userProfile);\n\n return {\n entry: [\n {\n fullUrl: `urn:uuid:${patientId}`,\n resource: fhirPatient,\n },\n {\n fullUrl: `urn:uuid:diagnostic-report-${report.reportId}`,\n resource: diagnosticReport,\n },\n ...fhirObservations,\n ],\n resourceType: 'Bundle',\n type: 'collection',\n };\n}\n"]}
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{"version":3,"sources":["/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-YGPGNIXK.cjs","../src/converter.ts"],"names":[],"mappings":"AAAA;AACE;AACA;AACF,wDAA6B;AAC7B;AACE;AACF,wDAA6B;AAC7B;AACE;AACA;AACF,wDAA6B;AAC7B;AACA;ACOA,SAAS,kBAAA,CAAmB,IAAA,EAAoB;AAC9C,EAAA,OAAA,CAAQ,IAAA,EAAM;AAAA,IACZ,KAAK,GAAA;AACH,MAAA,OAAO,GAAA;AAAA;AAAA,IACT,KAAK,GAAA;AACH,MAAA,OAAO,GAAA;AAAA;AAAA,IACT,OAAA;AACE,MAAA,OAAO,GAAA;AAAA,EACX;AACF;AAKA,SAAS,qBAAA,CAAsB,IAAA,EAAoB;AACjD,EAAA,OAAA,CAAQ,IAAA,EAAM;AAAA,IACZ,KAAK,GAAA;AACH,MAAA,OAAO,MAAA;AAAA,IACT,KAAK,GAAA;AACH,MAAA,OAAO,KAAA;AAAA,IACT,OAAA;AACE,MAAA,OAAO,QAAA;AAAA,EACX;AACF;AAKO,SAAS,oBAAA,CACd,WAAA,EACA,SAAA,EACA,cAAA,EACiB;AACjB,EAAA,MAAM,UAAA,EAAY,2CAAA,WAAY,CAAY,aAAa,CAAA;AAEvD,EAAA,MAAM,WAAA,EACJ,WAAA,CAAY,KAAA,GAAQ,8CAAA,WAAe,CAAY,aAAa,EAAA,GAAK,WAAA,CAAY,IAAA;AAC/E,EAAA,MAAM,SAAA,EAAW,0CAAA,UAAqB,CAAA;AACtC,EAAA,MAAM,cAAA,EAAgB,WAAA,CAAY,cAAA,GAAiB,OAAO,WAAA,CAAY,MAAA,IAAU,QAAA;AAGhF,EAAA,MAAM,QAAA,EAA2B;AAAA,IAC/B,QAAA,EAAU;AAAA,MACR;AAAA,QACE,MAAA,EAAQ;AAAA,UACN;AAAA,YACE,IAAA,EAAM,YAAA;AAAA,YACN,OAAA,EAAS,YAAA;AAAA,YACT,MAAA,EAAQ;AAAA,UACV;AAAA,QACF;AAAA,MACF;AAAA,IACF,CAAA;AAAA,IACA,IAAA,EAAM;AAAA;AAAA;AAAA;AAAA;AAAA;AAAA,MAMJ,MAAA,EAAQ;AAAA,QACN,GAAI,UAAA,EACA;AAAA,UACE;AAAA,YACE,IAAA,EAAM,SAAA;AAAA,YACN,OAAA,EAAS,WAAA,CAAY,aAAA;AAAA,YACrB,MAAA,EAAQ;AAAA,UACV;AAAA,QACF,EAAA,EACA,CAAC,CAAA;AAAA,QACL;AAAA,UACE,IAAA,EAAM,WAAA,CAAY,aAAA;AAAA,UAClB,OAAA,EAAS,WAAA,CAAY,aAAA;AAAA,UACrB,MAAA,EAAQ;AAAA,QACV;AAAA,MACF,CAAA;AAAA,MACA,IAAA,EAAM,WAAA,CAAY;AAAA,IACpB,CAAA;AAAA,IACA,iBAAA,EAAmB,WAAA,CAAY,cAAA;AAAA,IAC/B,EAAA,EAAI,CAAA,EAAA;AACJ,IAAA;AACE,MAAA;AACE,QAAA;AAAQ,UAAA;AACN,YAAA;AAC2C,YAAA;AACM,YAAA;AACvC,UAAA;AAEZ,QAAA;AACF,MAAA;AACF,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACE,MAAA;AACF,IAAA;AACF,EAAA;AAGI,EAAA;AACF,IAAA;AACK,EAAA;AACL,IAAA;AACE,MAAA;AACA,MAAA;AACA,MAAA;AACA,MAAA;AACF,IAAA;AAGI,IAAA;AACF,MAAA;AACE,QAAA;AAAA,UAAA;AACQ,YAAA;AACE,YAAA;AACE,YAAA;AACF,YAAA;AACa,UAAA;AACrB,UAAA;AACK,YAAA;AACG,YAAA;AACE,YAAA;AACF,YAAA;AACa,UAAA;AAEvB,QAAA;AACF,MAAA;AACF,IAAA;AACF,EAAA;AAEO,EAAA;AACT;AAKgB;AAMV,EAAA;AACJ,EAAA;AACO,IAAA;AACH,MAAA;AACA,MAAA;AACG,IAAA;AACH,MAAA;AACA,MAAA;AACG,IAAA;AACH,MAAA;AACA,MAAA;AACF,IAAA;AACE,MAAA;AACJ,EAAA;AAEO,EAAA;AACL,IAAA;AACE,MAAA;AACE,QAAA;AAAQ,UAAA;AACN,YAAA;AACQ,YAAA;AACG,YAAA;AACD,UAAA;AAEZ,QAAA;AACF,MAAA;AACF,IAAA;AACA,IAAA;AACE,MAAA;AACE,QAAA;AAAA,UAAA;AACQ;AAAA,UAAA;AACG,UAAA;AAEX,QAAA;AACF,MAAA;AACA,MAAA;AACF,IAAA;AACA,IAAA;AAIA,IAAA;AAGQ,MAAA;AACE,QAAA;AAAQ,UAAA;AACN,YAAA;AACQ,YAAA;AACG,YAAA;AACD,UAAA;AAEZ,QAAA;AACF,MAAA;AAEF,IAAA;AACN,IAAA;AACI,IAAA;AACJ,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACE,MAAA;AACF,IAAA;AACF,EAAA;AACF;AAMgB;AACR,EAAA;AACA,EAAA;AACA,EAAA;AAEC,EAAA;AACL,IAAA;AAEM,MAAA;AACE,QAAA;AACA,QAAA;AACA,QAAA;AAAM,UAAA;AAGgB,UAAA;AAEtB,QAAA;AACA,QAAA;AACA,QAAA;AACF,MAAA;AAEF,IAAA;AACJ,IAAA;AACA,IAAA;AACI,IAAA;AACJ,IAAA;AACE,MAAA;AACE,QAAA;AACA,QAAA;AACA,QAAA;AACF,MAAA;AACF,IAAA;AACA,IAAA;AACA,IAAA;AAEQ,MAAA;AACA,MAAA;AACJ,IAAA;AAEQ,MAAA;AACA,MAAA;AAEN,IAAA;AACR,EAAA;AACF;AAMgB;AAKR,EAAA;AAGA,EAAA;AACJ,IAAA;AACA,IAAA;AACI,MAAA;AACF,MAAA;AACA,MAAA;AACF,IAAA;AACA,EAAA;AAEI,EAAA;AACH,IAAA;AACH,EAAA;AAGM,EAAA;AAGA,EAAA;AAEC,EAAA;AACL,IAAA;AACE,MAAA;AACE,QAAA;AACA,QAAA;AACF,MAAA;AACA,MAAA;AACE,QAAA;AACA,QAAA;AACF,MAAA;AACG,MAAA;AACL,IAAA;AACA,IAAA;AACA,IAAA;AACF,EAAA;AACF;ADvES;AACA;AACA;AACA;AACA;AACA;AACA","file":"/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-YGPGNIXK.cjs","sourcesContent":[null,"/**\n * FHIR Converter\n *\n * Converts lab results to FHIR R4 DiagnosticReport and Observation resources.\n * See: https://hl7.org/fhir/diagnosticreport.html\n */\n\nimport { codeToLoinc } from './biomarkers';\nimport { BIOMARKER_CODE_SYSTEM, LOINC_SYSTEM } from './code-systems';\nimport type { FHIRBundle, FHIRDiagnosticReport, FHIRObservation, FHIRPatient } from './fhir-types';\nimport type { Flag, LabObservationData, LabReportData, UserProfileData } from './types';\nimport { getDefaultUnit, unitToUCUM } from './units';\n\n// Re-export all types and functions\nexport * from './fhir-types';\n\n/**\n * Convert Flag to FHIR interpretation code\n */\nfunction interpretationCode(flag: Flag): string {\n switch (flag) {\n case 'H':\n return 'H'; // High\n case 'L':\n return 'L'; // Low\n default:\n return 'N'; // Normal\n }\n}\n\n/**\n * Convert Flag to FHIR interpretation display\n */\nfunction interpretationDisplay(flag: Flag): string {\n switch (flag) {\n case 'H':\n return 'High';\n case 'L':\n return 'Low';\n default:\n return 'Normal';\n }\n}\n\n/**\n * Convert generic lab observation to FHIR Observation\n */\nexport function labObservationToFHIR(\n observation: LabObservationData,\n patientId: string,\n laboratoryName?: string,\n): FHIRObservation {\n const loincCode = codeToLoinc(observation.biomarkerCode);\n // Use default unit if source unit is empty\n const sourceUnit =\n observation.unit || getDefaultUnit(observation.biomarkerCode) || observation.unit;\n const ucumUnit = unitToUCUM(sourceUnit);\n const isQualitative = observation.isQualitative || typeof observation.value === 'string';\n\n // Base observation structure\n const fhirObs: FHIRObservation = {\n category: [\n {\n coding: [\n {\n code: 'laboratory',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/observation-category',\n },\n ],\n },\n ],\n code: {\n // Sem LOINC, o coding LOINC simplesmente não sai. Antes ia `99999-9`,\n // que não é código LOINC nenhum: publicava sob `http://loinc.org` uma\n // afirmação falsa, e quem consumisse o bundle confiando no system\n // trataria aquilo como código de verdade. Composição corporal, densidade\n // óssea e escore de cálcio não têm LOINC, e o certo é a lacuna explícita.\n coding: [\n ...(loincCode\n ? [\n {\n code: loincCode,\n display: observation.biomarkerName,\n system: LOINC_SYSTEM,\n },\n ]\n : []),\n {\n code: observation.biomarkerCode,\n display: observation.biomarkerName,\n system: BIOMARKER_CODE_SYSTEM,\n },\n ],\n text: observation.biomarkerName,\n },\n effectiveDateTime: observation.collectionDate,\n id: `${observation.reportId}-${observation.biomarkerCode}`,\n interpretation: [\n {\n coding: [\n {\n code: interpretationCode(observation.flag),\n display: interpretationDisplay(observation.flag),\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ],\n performer: laboratoryName ? [{ display: laboratoryName }] : undefined,\n resourceType: 'Observation',\n status: 'final',\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n\n // Add value based on type (qualitative = string, quantitative = number)\n if (isQualitative) {\n fhirObs.valueString = String(observation.value);\n } else {\n fhirObs.valueQuantity = {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.value as number,\n };\n\n // Reference range only applies to quantitative values\n if (observation.referenceMin !== undefined && observation.referenceMax !== undefined) {\n fhirObs.referenceRange = [\n {\n high: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMax,\n },\n low: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMin,\n },\n },\n ];\n }\n }\n\n return fhirObs;\n}\n\n/**\n * Convert generic lab report to FHIR DiagnosticReport\n */\nexport function labReportToFHIR(\n report: LabReportData,\n patientId: string,\n observationIds: string[],\n): FHIRDiagnosticReport {\n // Map processing status to FHIR status\n let status: FHIRDiagnosticReport['status'];\n switch (report.processingStatus) {\n case 'complete':\n status = 'final';\n break;\n case 'partial':\n status = 'partial';\n break;\n case 'pending_review':\n status = 'preliminary';\n break;\n default:\n status = 'final';\n }\n\n return {\n category: [\n {\n coding: [\n {\n code: 'LAB',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/v2-0074',\n },\n ],\n },\n ],\n code: {\n coding: [\n {\n code: '11502-2', // Laboratory report\n display: 'Laboratory report',\n system: 'http://loinc.org',\n },\n ],\n text: 'Laboratory Results',\n },\n conclusion:\n report.overallStatus === 'NORMAL'\n ? 'All results within normal limits'\n : 'One or more abnormal results detected',\n conclusionCode:\n report.overallStatus === 'ANORMAL'\n ? [\n {\n coding: [\n {\n code: 'A',\n display: 'Abnormal',\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ]\n : undefined,\n effectiveDateTime: report.collectionDate,\n id: report.reportId,\n issued: report.createdAt,\n performer: report.laboratoryName ? [{ display: report.laboratoryName }] : undefined,\n resourceType: 'DiagnosticReport',\n result: observationIds.map((id) => ({ reference: `Observation/${id}` })),\n status,\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n}\n\n/**\n * Convert user profile to FHIR Patient\n * NOTE: CPF is intentionally excluded for privacy (LGPD compliance)\n */\nexport function userProfileToFHIR(profile: UserProfileData): FHIRPatient {\n const nameParts = profile.name.split(' ');\n const given = nameParts.slice(0, -1);\n const family = nameParts[nameParts.length - 1] || '';\n\n return {\n address: profile.address\n ? [\n {\n city: profile.address.city,\n country: profile.address.country || 'BR',\n line: [\n profile.address.street && profile.address.number\n ? `${profile.address.street}, ${profile.address.number}`\n : profile.address.street,\n profile.address.complement,\n ].filter(Boolean) as string[],\n postalCode: profile.address.postalCode,\n state: profile.address.state,\n },\n ]\n : undefined,\n birthDate: profile.birthDate,\n gender: profile.gender,\n id: profile.userId,\n name: [\n {\n family,\n given: given.length > 0 ? given : undefined,\n text: profile.name,\n },\n ],\n resourceType: 'Patient',\n telecom:\n [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ].length > 0\n ? [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ]\n : undefined,\n };\n}\n\n/**\n * Convert complete lab result to FHIR Bundle\n * This is the main function for exporting lab results to FHIR R4 format\n */\nexport function labResultToFHIRBundle(\n report: LabReportData,\n observations: LabObservationData[],\n userProfile: UserProfileData,\n): FHIRBundle {\n const patientId = userProfile.userId;\n\n // Convert observations\n const fhirObservations = observations.map((obs) => ({\n fullUrl: `urn:uuid:observation-${obs.reportId}-${obs.biomarkerCode}`,\n resource: labObservationToFHIR(\n { ...obs, collectionDate: report.collectionDate },\n patientId,\n report.laboratoryName,\n ),\n }));\n\n const observationIds = observations.map(\n (obs) => `observation-${obs.reportId}-${obs.biomarkerCode}`,\n );\n\n // Convert report\n const diagnosticReport = labReportToFHIR(report, patientId, observationIds);\n\n // Convert patient\n const fhirPatient = userProfileToFHIR(userProfile);\n\n return {\n entry: [\n {\n fullUrl: `urn:uuid:${patientId}`,\n resource: fhirPatient,\n },\n {\n fullUrl: `urn:uuid:diagnostic-report-${report.reportId}`,\n resource: diagnosticReport,\n },\n ...fhirObservations,\n ],\n resourceType: 'Bundle',\n type: 'collection',\n };\n}\n"]}
|
package/dist/cli.js
CHANGED
|
@@ -395,6 +395,18 @@ var BIOMARKER_DEFINITIONS = [
|
|
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395
395
|
},
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|
396
396
|
unit: "ng/dL"
|
|
397
397
|
},
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398
|
+
{
|
|
399
|
+
category: "tireoide",
|
|
400
|
+
code: "Thyroglobulin",
|
|
401
|
+
// 3013-0 é a tireoglobulina sérica em massa/volume (ng/mL), a forma que o
|
|
402
|
+
// laboratório reporta. Não a de moles/volume (14918-7) nem os painéis.
|
|
403
|
+
loinc: "3013-0",
|
|
404
|
+
names: {
|
|
405
|
+
en: ["Thyroglobulin", "Tg"],
|
|
406
|
+
pt: ["Tireoglobulina", "Tg"]
|
|
407
|
+
},
|
|
408
|
+
unit: "ng/mL"
|
|
409
|
+
},
|
|
398
410
|
{
|
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399
411
|
category: "tireoide",
|
|
400
412
|
code: "T3Free",
|
|
@@ -644,6 +656,20 @@ var BIOMARKER_DEFINITIONS = [
|
|
|
644
656
|
},
|
|
645
657
|
unit: "pg/mL"
|
|
646
658
|
},
|
|
659
|
+
{
|
|
660
|
+
category: ["saude-feminina", "saude-masculina"],
|
|
661
|
+
code: "Estrone",
|
|
662
|
+
// Sem loinc de propósito. Em soro/massa-volume a LOINC só tem a forma
|
|
663
|
+
// "unconjugated" (2261-6) e razões; não há conceito de estrona total
|
|
664
|
+
// sérica. Atribuir a não-conjugada a um laudo de estrona total mediria
|
|
665
|
+
// outra fração — o mesmo tipo de erro que descartou candidatos nas 22
|
|
666
|
+
// primeiras. Entra sem código, política já usada em FatFreeMass e BMC.
|
|
667
|
+
names: {
|
|
668
|
+
en: ["Estrone", "E1"],
|
|
669
|
+
pt: ["Estrona", "E1"]
|
|
670
|
+
},
|
|
671
|
+
unit: "pg/mL"
|
|
672
|
+
},
|
|
647
673
|
{
|
|
648
674
|
category: ["saude-feminina", "saude-masculina"],
|
|
649
675
|
code: "FSH",
|
|
@@ -999,6 +1025,18 @@ var BIOMARKER_DEFINITIONS = [
|
|
|
999
1025
|
},
|
|
1000
1026
|
unit: "mg/dL"
|
|
1001
1027
|
},
|
|
1028
|
+
{
|
|
1029
|
+
category: "nutrientes",
|
|
1030
|
+
code: "Magnesium",
|
|
1031
|
+
// Magnésio sérico em massa/volume. Distinto do Magnesium_RBC (26746-8),
|
|
1032
|
+
// que mede a fração intraeritrocitária.
|
|
1033
|
+
loinc: "19123-9",
|
|
1034
|
+
names: {
|
|
1035
|
+
en: ["Magnesium", "Serum Magnesium", "Magnesium, Serum", "Magnesium Total"],
|
|
1036
|
+
pt: ["Magn\xE9sio", "Magn\xE9sio S\xE9rico", "Magn\xE9sio Total"]
|
|
1037
|
+
},
|
|
1038
|
+
unit: "mg/dL"
|
|
1039
|
+
},
|
|
1002
1040
|
{
|
|
1003
1041
|
category: "nutrientes",
|
|
1004
1042
|
code: "MMA",
|
|
@@ -1163,7 +1201,10 @@ var BIOMARKER_DEFINITIONS = [
|
|
|
1163
1201
|
{
|
|
1164
1202
|
category: "nutrientes",
|
|
1165
1203
|
code: "VitaminD",
|
|
1166
|
-
|
|
1204
|
+
// 62292-8 é 25(OH)D2 + 25(OH)D3, o total que os imunoensaios reportam
|
|
1205
|
+
// como "Vitamina D 25-OH". Até set/2026 apontava para 1989-3, que é só
|
|
1206
|
+
// a fração D3: nome parecido, analito diferente.
|
|
1207
|
+
loinc: "62292-8",
|
|
1167
1208
|
names: {
|
|
1168
1209
|
en: [
|
|
1169
1210
|
"Vitamin D",
|
|
@@ -6637,7 +6678,7 @@ async function main() {
|
|
|
6637
6678
|
strict: false
|
|
6638
6679
|
});
|
|
6639
6680
|
if (values.version) {
|
|
6640
|
-
process.stdout.write(`${"0.
|
|
6681
|
+
process.stdout.write(`${"0.22.0"}
|
|
6641
6682
|
`);
|
|
6642
6683
|
return;
|
|
6643
6684
|
}
|
package/dist/converter.cjs
CHANGED
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@@ -3,14 +3,14 @@
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3
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4
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5
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-
var
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+
var _chunkYGPGNIXKcjs = require('./chunk-YGPGNIXK.cjs');
|
|
7
7
|
require('./chunk-OR67NJDZ.cjs');
|
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8
|
-
require('./chunk-
|
|
8
|
+
require('./chunk-6WXSJGXF.cjs');
|
|
9
9
|
require('./chunk-MJ254F5K.cjs');
|
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10
10
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11
11
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12
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|
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|
13
13
|
|
|
14
14
|
|
|
15
|
-
exports.labObservationToFHIR =
|
|
15
|
+
exports.labObservationToFHIR = _chunkYGPGNIXKcjs.labObservationToFHIR; exports.labReportToFHIR = _chunkYGPGNIXKcjs.labReportToFHIR; exports.labResultToFHIRBundle = _chunkYGPGNIXKcjs.labResultToFHIRBundle; exports.userProfileToFHIR = _chunkYGPGNIXKcjs.userProfileToFHIR;
|
|
16
16
|
//# sourceMappingURL=converter.cjs.map
|
package/dist/converter.js
CHANGED
|
@@ -3,9 +3,9 @@ import {
|
|
|
3
3
|
labReportToFHIR,
|
|
4
4
|
labResultToFHIRBundle,
|
|
5
5
|
userProfileToFHIR
|
|
6
|
-
} from "./chunk-
|
|
6
|
+
} from "./chunk-YF3262UR.js";
|
|
7
7
|
import "./chunk-A6HR4XDK.js";
|
|
8
|
-
import "./chunk-
|
|
8
|
+
import "./chunk-BN4XL2PL.js";
|
|
9
9
|
import "./chunk-R4MUCMO3.js";
|
|
10
10
|
export {
|
|
11
11
|
labObservationToFHIR,
|
package/dist/importer.cjs
CHANGED
|
@@ -4,9 +4,9 @@
|
|
|
4
4
|
|
|
5
5
|
|
|
6
6
|
|
|
7
|
-
var
|
|
7
|
+
var _chunkAWO3PYPJcjs = require('./chunk-AWO3PYPJ.cjs');
|
|
8
8
|
require('./chunk-OR67NJDZ.cjs');
|
|
9
|
-
require('./chunk-
|
|
9
|
+
require('./chunk-6WXSJGXF.cjs');
|
|
10
10
|
require('./chunk-3ILBFLVQ.cjs');
|
|
11
11
|
|
|
12
12
|
|
|
@@ -14,5 +14,5 @@ require('./chunk-3ILBFLVQ.cjs');
|
|
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14
14
|
|
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15
15
|
|
|
16
16
|
|
|
17
|
-
exports.MAX_FILE_SIZE =
|
|
17
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+
exports.MAX_FILE_SIZE = _chunkAWO3PYPJcjs.MAX_FILE_SIZE; exports.MAX_OBSERVATIONS = _chunkAWO3PYPJcjs.MAX_OBSERVATIONS; exports.extractObservationsFromBundle = _chunkAWO3PYPJcjs.extractObservationsFromBundle; exports.mapFHIRObservationToInternal = _chunkAWO3PYPJcjs.mapFHIRObservationToInternal; exports.processImportBundle = _chunkAWO3PYPJcjs.processImportBundle;
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package/dist/importer.js
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} from "./chunk-
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} from "./chunk-MRAMTSD4.js";
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var _chunkYGPGNIXKcjs = require('./chunk-YGPGNIXK.cjs');
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var _chunkAWO3PYPJcjs = require('./chunk-AWO3PYPJ.cjs');
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var _chunk6WXSJGXFcjs = require('./chunk-6WXSJGXF.cjs');
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@@ -232,7 +232,7 @@ function interventionToFHIRObservation(intervention, patientId) {
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function interventionsToFHIRBundle(interventions, userProfile) {
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const fhirPatient =
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const fhirPatient = _chunkYGPGNIXKcjs.userProfileToFHIR.call(void 0, userProfile);
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exports.AGE_BRACKETS = AGE_BRACKETS; exports.BIOMARKER_CODE_SYSTEM = _chunkOR67NJDZcjs.BIOMARKER_CODE_SYSTEM; exports.BIOMARKER_DEFAULT_UNIT = _chunkMJ254F5Kcjs.BIOMARKER_DEFAULT_UNIT; exports.BIOMARKER_DEFINITIONS =
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exports.AGE_BRACKETS = AGE_BRACKETS; exports.BIOMARKER_CODE_SYSTEM = _chunkOR67NJDZcjs.BIOMARKER_CODE_SYSTEM; exports.BIOMARKER_DEFAULT_UNIT = _chunkMJ254F5Kcjs.BIOMARKER_DEFAULT_UNIT; exports.BIOMARKER_DEFINITIONS = _chunk6WXSJGXFcjs.BIOMARKER_DEFINITIONS; exports.BIOMARKER_UNITS = _chunkMJ254F5Kcjs.BIOMARKER_UNITS; exports.BODY_FAT_ZONES = BODY_FAT_ZONES; exports.CAC_INDICATOR_CODES = _chunk6WXSJGXFcjs.CAC_INDICATOR_CODES; exports.CATEGORY_GROUPS = CATEGORY_GROUPS; exports.CATEGORY_SCREENING_INTERVALS = CATEGORY_SCREENING_INTERVALS; exports.DEXA_CATEGORIES = _chunk6WXSJGXFcjs.DEXA_CATEGORIES; exports.DEXA_INDICATOR_CODES = _chunk6WXSJGXFcjs.DEXA_INDICATOR_CODES; exports.LOINC_SYSTEM = _chunkOR67NJDZcjs.LOINC_SYSTEM; exports.MAX_FILE_SIZE = _chunkAWO3PYPJcjs.MAX_FILE_SIZE; exports.MAX_OBSERVATIONS = _chunkAWO3PYPJcjs.MAX_OBSERVATIONS; exports.T_SCORE_ZONES = T_SCORE_ZONES; exports.UNIT_TO_UCUM = _chunkMJ254F5Kcjs.UNIT_TO_UCUM; exports.ZONE_DEFS = ZONE_DEFS; exports.applyFallbackReferenceRanges = _chunkERALICUKcjs.applyFallbackReferenceRanges; exports.biomarkerRangeDefinitions = _chunkERALICUKcjs.biomarkerRangeDefinitions; exports.calculateNextScreeningDate = calculateNextScreeningDate; exports.cnsToFHIRIdentifier = cnsToFHIRIdentifier; exports.codeToLoinc = _chunk6WXSJGXFcjs.codeToLoinc; exports.convertUnit = _chunkMJ254F5Kcjs.convertUnit; exports.cpfToFHIRIdentifier = cpfToFHIRIdentifier; exports.defaultReferenceRanges = _chunkERALICUKcjs.defaultReferenceRanges; exports.extractObservationsFromBundle = _chunkAWO3PYPJcjs.extractObservationsFromBundle; exports.filterVisibleBiomarkers = _chunk6WXSJGXFcjs.filterVisibleBiomarkers; exports.findCodeByName = _chunk6WXSJGXFcjs.findCodeByName; exports.formatCNS = formatCNS; exports.formatCPF = formatCPF; exports.generateCacFullReference = _chunk6WXSJGXFcjs.generateCacFullReference; exports.generateDexaFullReference = _chunk6WXSJGXFcjs.generateDexaFullReference; exports.generateFilteredLLMReference = _chunk6WXSJGXFcjs.generateFilteredLLMReference; exports.generateLLMReference = _chunk6WXSJGXFcjs.generateLLMReference; exports.getAllCodes = _chunk6WXSJGXFcjs.getAllCodes; exports.getAllDefinitions = _chunk6WXSJGXFcjs.getAllDefinitions; exports.getAllLoincCodes = _chunk6WXSJGXFcjs.getAllLoincCodes; exports.getAllSearchPatterns = _chunk6WXSJGXFcjs.getAllSearchPatterns; exports.getBiomarkersByCategory = _chunk6WXSJGXFcjs.getBiomarkersByCategory; exports.getBiomarkersForCategories = _chunk6WXSJGXFcjs.getBiomarkersForCategories; exports.getCanonicalUnit = _chunkMJ254F5Kcjs.getCanonicalUnit; exports.getCategoriesByInterval = getCategoriesByInterval; exports.getCategoryGroup = getCategoryGroup; exports.getDaysUntilScreening = getDaysUntilScreening; exports.getDefaultUnit = _chunkMJ254F5Kcjs.getDefaultUnit; exports.getDefinitionByCode = _chunk6WXSJGXFcjs.getDefinitionByCode; exports.getDefinitionByLoinc = _chunk6WXSJGXFcjs.getDefinitionByLoinc; exports.getDefinitionsBySex = _chunk6WXSJGXFcjs.getDefinitionsBySex; exports.getDueCategories = getDueCategories; exports.getFallbackReferenceRange = _chunkERALICUKcjs.getFallbackReferenceRange; exports.getRangeDirection = _chunkERALICUKcjs.getRangeDirection; exports.getReferenceRange = _chunkERALICUKcjs.getReferenceRange; exports.getSIUnit = _chunkMJ254F5Kcjs.getSIUnit; exports.getScreeningInterval = getScreeningInterval; exports.getSexForCode = _chunk6WXSJGXFcjs.getSexForCode; exports.getVisibleDefinitions = _chunk6WXSJGXFcjs.getVisibleDefinitions; exports.interventionToFHIRMedicationStatement = interventionToFHIRMedicationStatement; exports.interventionToFHIRObservation = interventionToFHIRObservation; exports.interventionsToFHIRBundle = interventionsToFHIRBundle; exports.isBiomarkerVisible = _chunk6WXSJGXFcjs.isBiomarkerVisible; exports.isCacDocument = _chunk6WXSJGXFcjs.isCacDocument; exports.isDexaDocument = _chunk6WXSJGXFcjs.isDexaDocument; exports.isScreeningDue = isScreeningDue; exports.isValidCode = _chunk6WXSJGXFcjs.isValidCode; exports.isValidLoinc = _chunk6WXSJGXFcjs.isValidLoinc; exports.labObservationToFHIR = _chunkYGPGNIXKcjs.labObservationToFHIR; exports.labReportToFHIR = _chunkYGPGNIXKcjs.labReportToFHIR; exports.labResultToFHIRBundle = _chunkYGPGNIXKcjs.labResultToFHIRBundle; exports.listMappedSubcategories = listMappedSubcategories; exports.loincToCode = _chunk6WXSJGXFcjs.loincToCode; exports.mapFHIRObservationToInternal = _chunkAWO3PYPJcjs.mapFHIRObservationToInternal; exports.normalizeCode = _chunk6WXSJGXFcjs.normalizeCode; exports.plural = plural; exports.pluralCount = pluralCount; exports.pluralPhrase = pluralPhrase; exports.pluralPhraseCount = pluralPhraseCount; exports.processImportBundle = _chunkAWO3PYPJcjs.processImportBundle; exports.toBiomarkerTests = _chunk6WXSJGXFcjs.toBiomarkerTests; exports.unitToUCUM = _chunkMJ254F5Kcjs.unitToUCUM; exports.userProfileToFHIR = _chunkYGPGNIXKcjs.userProfileToFHIR; exports.validateCNS = validateCNS; exports.validateCPF = validateCPF; exports.validateFHIRDiagnosticReport = _chunk3ILBFLVQcjs.validateFHIRDiagnosticReport; exports.validateFHIRImportBundle = _chunk3ILBFLVQcjs.validateFHIRImportBundle; exports.validateFHIRObservation = _chunk3ILBFLVQcjs.validateFHIRObservation; exports.validateLoincNameMatch = _chunk6WXSJGXFcjs.validateLoincNameMatch;
|
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701
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//# sourceMappingURL=index.cjs.map
|
package/dist/index.js
CHANGED
|
@@ -3,14 +3,14 @@ import {
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3
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labReportToFHIR,
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userProfileToFHIR
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} from "./chunk-
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+
} from "./chunk-YF3262UR.js";
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import {
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8
|
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extractObservationsFromBundle,
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mapFHIRObservationToInternal,
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processImportBundle
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} from "./chunk-
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+
} from "./chunk-MRAMTSD4.js";
|
|
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import {
|
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15
15
|
BIOMARKER_CODE_SYSTEM,
|
|
16
16
|
LOINC_SYSTEM
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|
@@ -47,7 +47,7 @@ import {
|
|
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47
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normalizeCode,
|
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toBiomarkerTests,
|
|
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validateLoincNameMatch
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50
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-
} from "./chunk-
|
|
50
|
+
} from "./chunk-BN4XL2PL.js";
|
|
51
51
|
import {
|
|
52
52
|
applyFallbackReferenceRanges,
|
|
53
53
|
biomarkerRangeDefinitions,
|
package/package.json
CHANGED