@precisa-saude/fhir 0.17.1 → 0.17.3
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/biomarkers.cjs +2 -2
- package/dist/biomarkers.js +1 -1
- package/dist/{chunk-NFTHC3ZR.js → chunk-7OP4ZWLI.js} +2 -2
- package/dist/{chunk-F3OGAFB2.cjs → chunk-CBGEU6SG.cjs} +1 -6
- package/dist/chunk-CBGEU6SG.cjs.map +1 -0
- package/dist/{chunk-NMF7MNOP.js → chunk-G2ECAN5M.js} +4 -4
- package/dist/{chunk-NMF7MNOP.js.map → chunk-G2ECAN5M.js.map} +1 -1
- package/dist/{chunk-L6FHDIWC.js → chunk-LR2OUVOA.js} +1 -6
- package/dist/chunk-LR2OUVOA.js.map +1 -0
- package/dist/{chunk-73PI5ZLR.cjs → chunk-PYZ6QR6U.cjs} +4 -4
- package/dist/{chunk-73PI5ZLR.cjs.map → chunk-PYZ6QR6U.cjs.map} +1 -1
- package/dist/{chunk-UHF354DX.js → chunk-VPR5SEUX.js} +2 -2
- package/dist/{chunk-SLTDA7DX.cjs → chunk-YKTVS7ZU.cjs} +3 -3
- package/dist/{chunk-SLTDA7DX.cjs.map → chunk-YKTVS7ZU.cjs.map} +1 -1
- package/dist/{chunk-N5BYRLCC.cjs → chunk-ZG76LN6Q.cjs} +4 -4
- package/dist/{chunk-N5BYRLCC.cjs.map → chunk-ZG76LN6Q.cjs.map} +1 -1
- package/dist/cli.js +4 -9
- package/dist/converter.cjs +3 -3
- package/dist/converter.js +2 -2
- package/dist/importer.cjs +3 -3
- package/dist/importer.js +2 -2
- package/dist/index.cjs +6 -6
- package/dist/index.js +4 -4
- package/dist/reference-ranges.cjs +2 -2
- package/dist/reference-ranges.js +1 -1
- package/package.json +1 -1
- package/dist/chunk-F3OGAFB2.cjs.map +0 -1
- package/dist/chunk-L6FHDIWC.js.map +0 -1
- /package/dist/{chunk-NFTHC3ZR.js.map → chunk-7OP4ZWLI.js.map} +0 -0
- /package/dist/{chunk-UHF354DX.js.map → chunk-VPR5SEUX.js.map} +0 -0
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
import {
|
|
2
2
|
getDefinitionByLoinc,
|
|
3
3
|
loincToCode
|
|
4
|
-
} from "./chunk-
|
|
4
|
+
} from "./chunk-G2ECAN5M.js";
|
|
5
5
|
import {
|
|
6
6
|
validateFHIRImportBundle
|
|
7
7
|
} from "./chunk-N3ZCOLG2.js";
|
|
@@ -150,4 +150,4 @@ export {
|
|
|
150
150
|
mapFHIRObservationToInternal,
|
|
151
151
|
processImportBundle
|
|
152
152
|
};
|
|
153
|
-
//# sourceMappingURL=chunk-
|
|
153
|
+
//# sourceMappingURL=chunk-VPR5SEUX.js.map
|
|
@@ -1,6 +1,6 @@
|
|
|
1
1
|
"use strict";Object.defineProperty(exports, "__esModule", {value: true});
|
|
2
2
|
|
|
3
|
-
var
|
|
3
|
+
var _chunkPYZ6QR6Ucjs = require('./chunk-PYZ6QR6U.cjs');
|
|
4
4
|
|
|
5
5
|
|
|
6
6
|
|
|
@@ -30,7 +30,7 @@ function interpretationDisplay(flag) {
|
|
|
30
30
|
}
|
|
31
31
|
}
|
|
32
32
|
function labObservationToFHIR(observation, patientId, laboratoryName) {
|
|
33
|
-
const loincCode =
|
|
33
|
+
const loincCode = _chunkPYZ6QR6Ucjs.codeToLoinc.call(void 0, observation.biomarkerCode) || "99999-9";
|
|
34
34
|
const sourceUnit = observation.unit || _chunkMJ254F5Kcjs.getDefaultUnit.call(void 0, observation.biomarkerCode) || observation.unit;
|
|
35
35
|
const ucumUnit = _chunkMJ254F5Kcjs.unitToUCUM.call(void 0, sourceUnit);
|
|
36
36
|
const isQualitative = observation.isQualitative || typeof observation.value === "string";
|
|
@@ -248,4 +248,4 @@ function labResultToFHIRBundle(report, observations, userProfile) {
|
|
|
248
248
|
|
|
249
249
|
|
|
250
250
|
exports.labObservationToFHIR = labObservationToFHIR; exports.labReportToFHIR = labReportToFHIR; exports.userProfileToFHIR = userProfileToFHIR; exports.labResultToFHIRBundle = labResultToFHIRBundle;
|
|
251
|
-
//# sourceMappingURL=chunk-
|
|
251
|
+
//# sourceMappingURL=chunk-YKTVS7ZU.cjs.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"sources":["/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-SLTDA7DX.cjs","../src/converter.ts"],"names":[],"mappings":"AAAA;AACE;AACF,wDAA6B;AAC7B;AACE;AACA;AACF,wDAA6B;AAC7B;AACA;ACUA,SAAS,kBAAA,CAAmB,IAAA,EAAoB;AAC9C,EAAA,OAAA,CAAQ,IAAA,EAAM;AAAA,IACZ,KAAK,GAAA;AACH,MAAA,OAAO,GAAA;AAAA;AAAA,IACT,KAAK,GAAA;AACH,MAAA,OAAO,GAAA;AAAA;AAAA,IACT,OAAA;AACE,MAAA,OAAO,GAAA;AAAA,EACX;AACF;AAKA,SAAS,qBAAA,CAAsB,IAAA,EAAoB;AACjD,EAAA,OAAA,CAAQ,IAAA,EAAM;AAAA,IACZ,KAAK,GAAA;AACH,MAAA,OAAO,MAAA;AAAA,IACT,KAAK,GAAA;AACH,MAAA,OAAO,KAAA;AAAA,IACT,OAAA;AACE,MAAA,OAAO,QAAA;AAAA,EACX;AACF;AAKO,SAAS,oBAAA,CACd,WAAA,EACA,SAAA,EACA,cAAA,EACiB;AACjB,EAAA,MAAM,UAAA,EAAY,2CAAA,WAAY,CAAY,aAAa,EAAA,GAAK,SAAA;AAE5D,EAAA,MAAM,WAAA,EACJ,WAAA,CAAY,KAAA,GAAQ,8CAAA,WAAe,CAAY,aAAa,EAAA,GAAK,WAAA,CAAY,IAAA;AAC/E,EAAA,MAAM,SAAA,EAAW,0CAAA,UAAqB,CAAA;AACtC,EAAA,MAAM,cAAA,EAAgB,WAAA,CAAY,cAAA,GAAiB,OAAO,WAAA,CAAY,MAAA,IAAU,QAAA;AAGhF,EAAA,MAAM,QAAA,EAA2B;AAAA,IAC/B,QAAA,EAAU;AAAA,MACR;AAAA,QACE,MAAA,EAAQ;AAAA,UACN;AAAA,YACE,IAAA,EAAM,YAAA;AAAA,YACN,OAAA,EAAS,YAAA;AAAA,YACT,MAAA,EAAQ;AAAA,UACV;AAAA,QACF;AAAA,MACF;AAAA,IACF,CAAA;AAAA,IACA,IAAA,EAAM;AAAA,MACJ,MAAA,EAAQ;AAAA,QACN;AAAA,UACE,IAAA,EAAM,SAAA;AAAA,UACN,OAAA,EAAS,WAAA,CAAY,aAAA;AAAA,UACrB,MAAA,EAAQ;AAAA,QACV,CAAA;AAAA,QACA;AAAA,UACE,IAAA,EAAM,WAAA,CAAY,aAAA;AAAA,UAClB,OAAA,EAAS,WAAA,CAAY,aAAA;AAAA,UACrB,MAAA,EAAQ;AAAA,QACV;AAAA,MACF,CAAA;AAAA,MACA,IAAA,EAAM,WAAA,CAAY;AAAA,IACpB,CAAA;AAAA,IACA,iBAAA,EAAmB,WAAA,CAAY,cAAA;AAAA,IAC/B,EAAA,EAAI,CAAA,EAAA;AACJ,IAAA;AACE,MAAA;AACE,QAAA;AAAQ,UAAA;AACN,YAAA;AAC2C,YAAA;AACM,YAAA;AACvC,UAAA;AAEZ,QAAA;AACF,MAAA;AACF,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACE,MAAA;AACF,IAAA;AACF,EAAA;AAGI,EAAA;AACF,IAAA;AACK,EAAA;AACL,IAAA;AACE,MAAA;AACA,MAAA;AACA,MAAA;AACA,MAAA;AACF,IAAA;AAGI,IAAA;AACF,MAAA;AACE,QAAA;AAAA,UAAA;AACQ,YAAA;AACE,YAAA;AACE,YAAA;AACF,YAAA;AACa,UAAA;AACrB,UAAA;AACK,YAAA;AACG,YAAA;AACE,YAAA;AACF,YAAA;AACa,UAAA;AAEvB,QAAA;AACF,MAAA;AACF,IAAA;AACF,EAAA;AAEO,EAAA;AACT;AAKgB;AAMV,EAAA;AACJ,EAAA;AACO,IAAA;AACH,MAAA;AACA,MAAA;AACG,IAAA;AACH,MAAA;AACA,MAAA;AACG,IAAA;AACH,MAAA;AACA,MAAA;AACF,IAAA;AACE,MAAA;AACJ,EAAA;AAEO,EAAA;AACL,IAAA;AACE,MAAA;AACE,QAAA;AAAQ,UAAA;AACN,YAAA;AACQ,YAAA;AACG,YAAA;AACD,UAAA;AAEZ,QAAA;AACF,MAAA;AACF,IAAA;AACA,IAAA;AACE,MAAA;AACE,QAAA;AAAA,UAAA;AACQ;AAAA,UAAA;AACG,UAAA;AAEX,QAAA;AACF,MAAA;AACA,MAAA;AACF,IAAA;AACA,IAAA;AAIA,IAAA;AAGQ,MAAA;AACE,QAAA;AAAQ,UAAA;AACN,YAAA;AACQ,YAAA;AACG,YAAA;AACD,UAAA;AAEZ,QAAA;AACF,MAAA;AAEF,IAAA;AACN,IAAA;AACI,IAAA;AACJ,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACE,MAAA;AACF,IAAA;AACF,EAAA;AACF;AAMgB;AACR,EAAA;AACA,EAAA;AACA,EAAA;AAEC,EAAA;AACL,IAAA;AAEM,MAAA;AACE,QAAA;AACA,QAAA;AACA,QAAA;AAAM,UAAA;AAGgB,UAAA;AAEtB,QAAA;AACA,QAAA;AACA,QAAA;AACF,MAAA;AAEF,IAAA;AACJ,IAAA;AACA,IAAA;AACI,IAAA;AACJ,IAAA;AACE,MAAA;AACE,QAAA;AACA,QAAA;AACA,QAAA;AACF,MAAA;AACF,IAAA;AACA,IAAA;AACA,IAAA;AAEQ,MAAA;AACA,MAAA;AACJ,IAAA;AAEQ,MAAA;AACA,MAAA;AAEN,IAAA;AACR,EAAA;AACF;AAMgB;AAKR,EAAA;AAGA,EAAA;AACJ,IAAA;AACA,IAAA;AACI,MAAA;AACF,MAAA;AACA,MAAA;AACF,IAAA;AACA,EAAA;AAEI,EAAA;AACH,IAAA;AACH,EAAA;AAGM,EAAA;AAGA,EAAA;AAEC,EAAA;AACL,IAAA;AACE,MAAA;AACE,QAAA;AACA,QAAA;AACF,MAAA;AACA,MAAA;AACE,QAAA;AACA,QAAA;AACF,MAAA;AACG,MAAA;AACL,IAAA;AACA,IAAA;AACA,IAAA;AACF,EAAA;AACF;ADxES;AACA;AACA;AACA;AACA;AACA;AACA","file":"/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-SLTDA7DX.cjs","sourcesContent":[null,"/**\n * FHIR Converter\n *\n * Converts lab results to FHIR R4 DiagnosticReport and Observation resources.\n * See: https://hl7.org/fhir/diagnosticreport.html\n */\n\nimport { codeToLoinc } from './biomarkers';\nimport type { FHIRBundle, FHIRDiagnosticReport, FHIRObservation, FHIRPatient } from './fhir-types';\nimport type { Flag, LabObservationData, LabReportData, UserProfileData } from './types';\nimport { getDefaultUnit, unitToUCUM } from './units';\n\n// Re-export all types and functions\nexport * from './fhir-types';\n\n/**\n * Convert Flag to FHIR interpretation code\n */\nfunction interpretationCode(flag: Flag): string {\n switch (flag) {\n case 'H':\n return 'H'; // High\n case 'L':\n return 'L'; // Low\n default:\n return 'N'; // Normal\n }\n}\n\n/**\n * Convert Flag to FHIR interpretation display\n */\nfunction interpretationDisplay(flag: Flag): string {\n switch (flag) {\n case 'H':\n return 'High';\n case 'L':\n return 'Low';\n default:\n return 'Normal';\n }\n}\n\n/**\n * Convert generic lab observation to FHIR Observation\n */\nexport function labObservationToFHIR(\n observation: LabObservationData,\n patientId: string,\n laboratoryName?: string,\n): FHIRObservation {\n const loincCode = codeToLoinc(observation.biomarkerCode) || '99999-9';\n // Use default unit if source unit is empty\n const sourceUnit =\n observation.unit || getDefaultUnit(observation.biomarkerCode) || observation.unit;\n const ucumUnit = unitToUCUM(sourceUnit);\n const isQualitative = observation.isQualitative || typeof observation.value === 'string';\n\n // Base observation structure\n const fhirObs: FHIRObservation = {\n category: [\n {\n coding: [\n {\n code: 'laboratory',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/observation-category',\n },\n ],\n },\n ],\n code: {\n coding: [\n {\n code: loincCode,\n display: observation.biomarkerName,\n system: 'http://loinc.org',\n },\n {\n code: observation.biomarkerCode,\n display: observation.biomarkerName,\n system: 'http://fhir-brasil.dev/biomarker-codes',\n },\n ],\n text: observation.biomarkerName,\n },\n effectiveDateTime: observation.collectionDate,\n id: `${observation.reportId}-${observation.biomarkerCode}`,\n interpretation: [\n {\n coding: [\n {\n code: interpretationCode(observation.flag),\n display: interpretationDisplay(observation.flag),\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ],\n performer: laboratoryName ? [{ display: laboratoryName }] : undefined,\n resourceType: 'Observation',\n status: 'final',\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n\n // Add value based on type (qualitative = string, quantitative = number)\n if (isQualitative) {\n fhirObs.valueString = String(observation.value);\n } else {\n fhirObs.valueQuantity = {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.value as number,\n };\n\n // Reference range only applies to quantitative values\n if (observation.referenceMin !== undefined && observation.referenceMax !== undefined) {\n fhirObs.referenceRange = [\n {\n high: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMax,\n },\n low: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMin,\n },\n },\n ];\n }\n }\n\n return fhirObs;\n}\n\n/**\n * Convert generic lab report to FHIR DiagnosticReport\n */\nexport function labReportToFHIR(\n report: LabReportData,\n patientId: string,\n observationIds: string[],\n): FHIRDiagnosticReport {\n // Map processing status to FHIR status\n let status: FHIRDiagnosticReport['status'];\n switch (report.processingStatus) {\n case 'complete':\n status = 'final';\n break;\n case 'partial':\n status = 'partial';\n break;\n case 'pending_review':\n status = 'preliminary';\n break;\n default:\n status = 'final';\n }\n\n return {\n category: [\n {\n coding: [\n {\n code: 'LAB',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/v2-0074',\n },\n ],\n },\n ],\n code: {\n coding: [\n {\n code: '11502-2', // Laboratory report\n display: 'Laboratory report',\n system: 'http://loinc.org',\n },\n ],\n text: 'Laboratory Results',\n },\n conclusion:\n report.overallStatus === 'NORMAL'\n ? 'All results within normal limits'\n : 'One or more abnormal results detected',\n conclusionCode:\n report.overallStatus === 'ANORMAL'\n ? [\n {\n coding: [\n {\n code: 'A',\n display: 'Abnormal',\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ]\n : undefined,\n effectiveDateTime: report.collectionDate,\n id: report.reportId,\n issued: report.createdAt,\n performer: report.laboratoryName ? [{ display: report.laboratoryName }] : undefined,\n resourceType: 'DiagnosticReport',\n result: observationIds.map((id) => ({ reference: `Observation/${id}` })),\n status,\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n}\n\n/**\n * Convert user profile to FHIR Patient\n * NOTE: CPF is intentionally excluded for privacy (LGPD compliance)\n */\nexport function userProfileToFHIR(profile: UserProfileData): FHIRPatient {\n const nameParts = profile.name.split(' ');\n const given = nameParts.slice(0, -1);\n const family = nameParts[nameParts.length - 1] || '';\n\n return {\n address: profile.address\n ? [\n {\n city: profile.address.city,\n country: profile.address.country || 'BR',\n line: [\n profile.address.street && profile.address.number\n ? `${profile.address.street}, ${profile.address.number}`\n : profile.address.street,\n profile.address.complement,\n ].filter(Boolean) as string[],\n postalCode: profile.address.postalCode,\n state: profile.address.state,\n },\n ]\n : undefined,\n birthDate: profile.birthDate,\n gender: profile.gender,\n id: profile.userId,\n name: [\n {\n family,\n given: given.length > 0 ? given : undefined,\n text: profile.name,\n },\n ],\n resourceType: 'Patient',\n telecom:\n [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ].length > 0\n ? [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ]\n : undefined,\n };\n}\n\n/**\n * Convert complete lab result to FHIR Bundle\n * This is the main function for exporting lab results to FHIR R4 format\n */\nexport function labResultToFHIRBundle(\n report: LabReportData,\n observations: LabObservationData[],\n userProfile: UserProfileData,\n): FHIRBundle {\n const patientId = userProfile.userId;\n\n // Convert observations\n const fhirObservations = observations.map((obs) => ({\n fullUrl: `urn:uuid:observation-${obs.reportId}-${obs.biomarkerCode}`,\n resource: labObservationToFHIR(\n { ...obs, collectionDate: report.collectionDate },\n patientId,\n report.laboratoryName,\n ),\n }));\n\n const observationIds = observations.map(\n (obs) => `observation-${obs.reportId}-${obs.biomarkerCode}`,\n );\n\n // Convert report\n const diagnosticReport = labReportToFHIR(report, patientId, observationIds);\n\n // Convert patient\n const fhirPatient = userProfileToFHIR(userProfile);\n\n return {\n entry: [\n {\n fullUrl: `urn:uuid:${patientId}`,\n resource: fhirPatient,\n },\n {\n fullUrl: `urn:uuid:diagnostic-report-${report.reportId}`,\n resource: diagnosticReport,\n },\n ...fhirObservations,\n ],\n resourceType: 'Bundle',\n type: 'collection',\n };\n}\n"]}
|
|
1
|
+
{"version":3,"sources":["/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-YKTVS7ZU.cjs","../src/converter.ts"],"names":[],"mappings":"AAAA;AACE;AACF,wDAA6B;AAC7B;AACE;AACA;AACF,wDAA6B;AAC7B;AACA;ACUA,SAAS,kBAAA,CAAmB,IAAA,EAAoB;AAC9C,EAAA,OAAA,CAAQ,IAAA,EAAM;AAAA,IACZ,KAAK,GAAA;AACH,MAAA,OAAO,GAAA;AAAA;AAAA,IACT,KAAK,GAAA;AACH,MAAA,OAAO,GAAA;AAAA;AAAA,IACT,OAAA;AACE,MAAA,OAAO,GAAA;AAAA,EACX;AACF;AAKA,SAAS,qBAAA,CAAsB,IAAA,EAAoB;AACjD,EAAA,OAAA,CAAQ,IAAA,EAAM;AAAA,IACZ,KAAK,GAAA;AACH,MAAA,OAAO,MAAA;AAAA,IACT,KAAK,GAAA;AACH,MAAA,OAAO,KAAA;AAAA,IACT,OAAA;AACE,MAAA,OAAO,QAAA;AAAA,EACX;AACF;AAKO,SAAS,oBAAA,CACd,WAAA,EACA,SAAA,EACA,cAAA,EACiB;AACjB,EAAA,MAAM,UAAA,EAAY,2CAAA,WAAY,CAAY,aAAa,EAAA,GAAK,SAAA;AAE5D,EAAA,MAAM,WAAA,EACJ,WAAA,CAAY,KAAA,GAAQ,8CAAA,WAAe,CAAY,aAAa,EAAA,GAAK,WAAA,CAAY,IAAA;AAC/E,EAAA,MAAM,SAAA,EAAW,0CAAA,UAAqB,CAAA;AACtC,EAAA,MAAM,cAAA,EAAgB,WAAA,CAAY,cAAA,GAAiB,OAAO,WAAA,CAAY,MAAA,IAAU,QAAA;AAGhF,EAAA,MAAM,QAAA,EAA2B;AAAA,IAC/B,QAAA,EAAU;AAAA,MACR;AAAA,QACE,MAAA,EAAQ;AAAA,UACN;AAAA,YACE,IAAA,EAAM,YAAA;AAAA,YACN,OAAA,EAAS,YAAA;AAAA,YACT,MAAA,EAAQ;AAAA,UACV;AAAA,QACF;AAAA,MACF;AAAA,IACF,CAAA;AAAA,IACA,IAAA,EAAM;AAAA,MACJ,MAAA,EAAQ;AAAA,QACN;AAAA,UACE,IAAA,EAAM,SAAA;AAAA,UACN,OAAA,EAAS,WAAA,CAAY,aAAA;AAAA,UACrB,MAAA,EAAQ;AAAA,QACV,CAAA;AAAA,QACA;AAAA,UACE,IAAA,EAAM,WAAA,CAAY,aAAA;AAAA,UAClB,OAAA,EAAS,WAAA,CAAY,aAAA;AAAA,UACrB,MAAA,EAAQ;AAAA,QACV;AAAA,MACF,CAAA;AAAA,MACA,IAAA,EAAM,WAAA,CAAY;AAAA,IACpB,CAAA;AAAA,IACA,iBAAA,EAAmB,WAAA,CAAY,cAAA;AAAA,IAC/B,EAAA,EAAI,CAAA,EAAA;AACJ,IAAA;AACE,MAAA;AACE,QAAA;AAAQ,UAAA;AACN,YAAA;AAC2C,YAAA;AACM,YAAA;AACvC,UAAA;AAEZ,QAAA;AACF,MAAA;AACF,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACE,MAAA;AACF,IAAA;AACF,EAAA;AAGI,EAAA;AACF,IAAA;AACK,EAAA;AACL,IAAA;AACE,MAAA;AACA,MAAA;AACA,MAAA;AACA,MAAA;AACF,IAAA;AAGI,IAAA;AACF,MAAA;AACE,QAAA;AAAA,UAAA;AACQ,YAAA;AACE,YAAA;AACE,YAAA;AACF,YAAA;AACa,UAAA;AACrB,UAAA;AACK,YAAA;AACG,YAAA;AACE,YAAA;AACF,YAAA;AACa,UAAA;AAEvB,QAAA;AACF,MAAA;AACF,IAAA;AACF,EAAA;AAEO,EAAA;AACT;AAKgB;AAMV,EAAA;AACJ,EAAA;AACO,IAAA;AACH,MAAA;AACA,MAAA;AACG,IAAA;AACH,MAAA;AACA,MAAA;AACG,IAAA;AACH,MAAA;AACA,MAAA;AACF,IAAA;AACE,MAAA;AACJ,EAAA;AAEO,EAAA;AACL,IAAA;AACE,MAAA;AACE,QAAA;AAAQ,UAAA;AACN,YAAA;AACQ,YAAA;AACG,YAAA;AACD,UAAA;AAEZ,QAAA;AACF,MAAA;AACF,IAAA;AACA,IAAA;AACE,MAAA;AACE,QAAA;AAAA,UAAA;AACQ;AAAA,UAAA;AACG,UAAA;AAEX,QAAA;AACF,MAAA;AACA,MAAA;AACF,IAAA;AACA,IAAA;AAIA,IAAA;AAGQ,MAAA;AACE,QAAA;AAAQ,UAAA;AACN,YAAA;AACQ,YAAA;AACG,YAAA;AACD,UAAA;AAEZ,QAAA;AACF,MAAA;AAEF,IAAA;AACN,IAAA;AACI,IAAA;AACJ,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACE,MAAA;AACF,IAAA;AACF,EAAA;AACF;AAMgB;AACR,EAAA;AACA,EAAA;AACA,EAAA;AAEC,EAAA;AACL,IAAA;AAEM,MAAA;AACE,QAAA;AACA,QAAA;AACA,QAAA;AAAM,UAAA;AAGgB,UAAA;AAEtB,QAAA;AACA,QAAA;AACA,QAAA;AACF,MAAA;AAEF,IAAA;AACJ,IAAA;AACA,IAAA;AACI,IAAA;AACJ,IAAA;AACE,MAAA;AACE,QAAA;AACA,QAAA;AACA,QAAA;AACF,MAAA;AACF,IAAA;AACA,IAAA;AACA,IAAA;AAEQ,MAAA;AACA,MAAA;AACJ,IAAA;AAEQ,MAAA;AACA,MAAA;AAEN,IAAA;AACR,EAAA;AACF;AAMgB;AAKR,EAAA;AAGA,EAAA;AACJ,IAAA;AACA,IAAA;AACI,MAAA;AACF,MAAA;AACA,MAAA;AACF,IAAA;AACA,EAAA;AAEI,EAAA;AACH,IAAA;AACH,EAAA;AAGM,EAAA;AAGA,EAAA;AAEC,EAAA;AACL,IAAA;AACE,MAAA;AACE,QAAA;AACA,QAAA;AACF,MAAA;AACA,MAAA;AACE,QAAA;AACA,QAAA;AACF,MAAA;AACG,MAAA;AACL,IAAA;AACA,IAAA;AACA,IAAA;AACF,EAAA;AACF;ADxES;AACA;AACA;AACA;AACA;AACA;AACA","file":"/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-YKTVS7ZU.cjs","sourcesContent":[null,"/**\n * FHIR Converter\n *\n * Converts lab results to FHIR R4 DiagnosticReport and Observation resources.\n * See: https://hl7.org/fhir/diagnosticreport.html\n */\n\nimport { codeToLoinc } from './biomarkers';\nimport type { FHIRBundle, FHIRDiagnosticReport, FHIRObservation, FHIRPatient } from './fhir-types';\nimport type { Flag, LabObservationData, LabReportData, UserProfileData } from './types';\nimport { getDefaultUnit, unitToUCUM } from './units';\n\n// Re-export all types and functions\nexport * from './fhir-types';\n\n/**\n * Convert Flag to FHIR interpretation code\n */\nfunction interpretationCode(flag: Flag): string {\n switch (flag) {\n case 'H':\n return 'H'; // High\n case 'L':\n return 'L'; // Low\n default:\n return 'N'; // Normal\n }\n}\n\n/**\n * Convert Flag to FHIR interpretation display\n */\nfunction interpretationDisplay(flag: Flag): string {\n switch (flag) {\n case 'H':\n return 'High';\n case 'L':\n return 'Low';\n default:\n return 'Normal';\n }\n}\n\n/**\n * Convert generic lab observation to FHIR Observation\n */\nexport function labObservationToFHIR(\n observation: LabObservationData,\n patientId: string,\n laboratoryName?: string,\n): FHIRObservation {\n const loincCode = codeToLoinc(observation.biomarkerCode) || '99999-9';\n // Use default unit if source unit is empty\n const sourceUnit =\n observation.unit || getDefaultUnit(observation.biomarkerCode) || observation.unit;\n const ucumUnit = unitToUCUM(sourceUnit);\n const isQualitative = observation.isQualitative || typeof observation.value === 'string';\n\n // Base observation structure\n const fhirObs: FHIRObservation = {\n category: [\n {\n coding: [\n {\n code: 'laboratory',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/observation-category',\n },\n ],\n },\n ],\n code: {\n coding: [\n {\n code: loincCode,\n display: observation.biomarkerName,\n system: 'http://loinc.org',\n },\n {\n code: observation.biomarkerCode,\n display: observation.biomarkerName,\n system: 'http://fhir-brasil.dev/biomarker-codes',\n },\n ],\n text: observation.biomarkerName,\n },\n effectiveDateTime: observation.collectionDate,\n id: `${observation.reportId}-${observation.biomarkerCode}`,\n interpretation: [\n {\n coding: [\n {\n code: interpretationCode(observation.flag),\n display: interpretationDisplay(observation.flag),\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ],\n performer: laboratoryName ? [{ display: laboratoryName }] : undefined,\n resourceType: 'Observation',\n status: 'final',\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n\n // Add value based on type (qualitative = string, quantitative = number)\n if (isQualitative) {\n fhirObs.valueString = String(observation.value);\n } else {\n fhirObs.valueQuantity = {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.value as number,\n };\n\n // Reference range only applies to quantitative values\n if (observation.referenceMin !== undefined && observation.referenceMax !== undefined) {\n fhirObs.referenceRange = [\n {\n high: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMax,\n },\n low: {\n code: ucumUnit,\n system: 'http://unitsofmeasure.org',\n unit: sourceUnit,\n value: observation.referenceMin,\n },\n },\n ];\n }\n }\n\n return fhirObs;\n}\n\n/**\n * Convert generic lab report to FHIR DiagnosticReport\n */\nexport function labReportToFHIR(\n report: LabReportData,\n patientId: string,\n observationIds: string[],\n): FHIRDiagnosticReport {\n // Map processing status to FHIR status\n let status: FHIRDiagnosticReport['status'];\n switch (report.processingStatus) {\n case 'complete':\n status = 'final';\n break;\n case 'partial':\n status = 'partial';\n break;\n case 'pending_review':\n status = 'preliminary';\n break;\n default:\n status = 'final';\n }\n\n return {\n category: [\n {\n coding: [\n {\n code: 'LAB',\n display: 'Laboratory',\n system: 'http://terminology.hl7.org/CodeSystem/v2-0074',\n },\n ],\n },\n ],\n code: {\n coding: [\n {\n code: '11502-2', // Laboratory report\n display: 'Laboratory report',\n system: 'http://loinc.org',\n },\n ],\n text: 'Laboratory Results',\n },\n conclusion:\n report.overallStatus === 'NORMAL'\n ? 'All results within normal limits'\n : 'One or more abnormal results detected',\n conclusionCode:\n report.overallStatus === 'ANORMAL'\n ? [\n {\n coding: [\n {\n code: 'A',\n display: 'Abnormal',\n system: 'http://terminology.hl7.org/CodeSystem/v3-ObservationInterpretation',\n },\n ],\n },\n ]\n : undefined,\n effectiveDateTime: report.collectionDate,\n id: report.reportId,\n issued: report.createdAt,\n performer: report.laboratoryName ? [{ display: report.laboratoryName }] : undefined,\n resourceType: 'DiagnosticReport',\n result: observationIds.map((id) => ({ reference: `Observation/${id}` })),\n status,\n subject: {\n reference: `Patient/${patientId}`,\n },\n };\n}\n\n/**\n * Convert user profile to FHIR Patient\n * NOTE: CPF is intentionally excluded for privacy (LGPD compliance)\n */\nexport function userProfileToFHIR(profile: UserProfileData): FHIRPatient {\n const nameParts = profile.name.split(' ');\n const given = nameParts.slice(0, -1);\n const family = nameParts[nameParts.length - 1] || '';\n\n return {\n address: profile.address\n ? [\n {\n city: profile.address.city,\n country: profile.address.country || 'BR',\n line: [\n profile.address.street && profile.address.number\n ? `${profile.address.street}, ${profile.address.number}`\n : profile.address.street,\n profile.address.complement,\n ].filter(Boolean) as string[],\n postalCode: profile.address.postalCode,\n state: profile.address.state,\n },\n ]\n : undefined,\n birthDate: profile.birthDate,\n gender: profile.gender,\n id: profile.userId,\n name: [\n {\n family,\n given: given.length > 0 ? given : undefined,\n text: profile.name,\n },\n ],\n resourceType: 'Patient',\n telecom:\n [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ].length > 0\n ? [\n ...(profile.email ? [{ system: 'email' as const, value: profile.email }] : []),\n ...(profile.phone ? [{ system: 'phone' as const, value: profile.phone }] : []),\n ]\n : undefined,\n };\n}\n\n/**\n * Convert complete lab result to FHIR Bundle\n * This is the main function for exporting lab results to FHIR R4 format\n */\nexport function labResultToFHIRBundle(\n report: LabReportData,\n observations: LabObservationData[],\n userProfile: UserProfileData,\n): FHIRBundle {\n const patientId = userProfile.userId;\n\n // Convert observations\n const fhirObservations = observations.map((obs) => ({\n fullUrl: `urn:uuid:observation-${obs.reportId}-${obs.biomarkerCode}`,\n resource: labObservationToFHIR(\n { ...obs, collectionDate: report.collectionDate },\n patientId,\n report.laboratoryName,\n ),\n }));\n\n const observationIds = observations.map(\n (obs) => `observation-${obs.reportId}-${obs.biomarkerCode}`,\n );\n\n // Convert report\n const diagnosticReport = labReportToFHIR(report, patientId, observationIds);\n\n // Convert patient\n const fhirPatient = userProfileToFHIR(userProfile);\n\n return {\n entry: [\n {\n fullUrl: `urn:uuid:${patientId}`,\n resource: fhirPatient,\n },\n {\n fullUrl: `urn:uuid:diagnostic-report-${report.reportId}`,\n resource: diagnosticReport,\n },\n ...fhirObservations,\n ],\n resourceType: 'Bundle',\n type: 'collection',\n };\n}\n"]}
|
|
@@ -1,7 +1,7 @@
|
|
|
1
1
|
"use strict";Object.defineProperty(exports, "__esModule", {value: true}); function _optionalChain(ops) { let lastAccessLHS = undefined; let value = ops[0]; let i = 1; while (i < ops.length) { const op = ops[i]; const fn = ops[i + 1]; i += 2; if ((op === 'optionalAccess' || op === 'optionalCall') && value == null) { return undefined; } if (op === 'access' || op === 'optionalAccess') { lastAccessLHS = value; value = fn(value); } else if (op === 'call' || op === 'optionalCall') { value = fn((...args) => value.call(lastAccessLHS, ...args)); lastAccessLHS = undefined; } } return value; }
|
|
2
2
|
|
|
3
3
|
|
|
4
|
-
var
|
|
4
|
+
var _chunkPYZ6QR6Ucjs = require('./chunk-PYZ6QR6U.cjs');
|
|
5
5
|
|
|
6
6
|
|
|
7
7
|
var _chunk3ILBFLVQcjs = require('./chunk-3ILBFLVQ.cjs');
|
|
@@ -51,7 +51,7 @@ function mapFHIRObservationToInternal(observation, index) {
|
|
|
51
51
|
}
|
|
52
52
|
};
|
|
53
53
|
}
|
|
54
|
-
const internalCode =
|
|
54
|
+
const internalCode = _chunkPYZ6QR6Ucjs.loincToCode.call(void 0, loincCode);
|
|
55
55
|
if (!internalCode) {
|
|
56
56
|
return {
|
|
57
57
|
skipped: {
|
|
@@ -62,7 +62,7 @@ function mapFHIRObservationToInternal(observation, index) {
|
|
|
62
62
|
}
|
|
63
63
|
};
|
|
64
64
|
}
|
|
65
|
-
const definition =
|
|
65
|
+
const definition = _chunkPYZ6QR6Ucjs.getDefinitionByLoinc.call(void 0, loincCode);
|
|
66
66
|
let value;
|
|
67
67
|
let unit = "";
|
|
68
68
|
let isQualitative = false;
|
|
@@ -150,4 +150,4 @@ function processImportBundle(data) {
|
|
|
150
150
|
|
|
151
151
|
|
|
152
152
|
exports.MAX_OBSERVATIONS = MAX_OBSERVATIONS; exports.MAX_FILE_SIZE = MAX_FILE_SIZE; exports.extractObservationsFromBundle = extractObservationsFromBundle; exports.mapFHIRObservationToInternal = mapFHIRObservationToInternal; exports.processImportBundle = processImportBundle;
|
|
153
|
-
//# sourceMappingURL=chunk-
|
|
153
|
+
//# sourceMappingURL=chunk-ZG76LN6Q.cjs.map
|
|
@@ -1 +1 @@
|
|
|
1
|
-
{"version":3,"sources":["/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-
|
|
1
|
+
{"version":3,"sources":["/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-ZG76LN6Q.cjs","../src/importer.ts"],"names":[],"mappings":"AAAA;AACE;AACA;AACF,wDAA6B;AAC7B;AACE;AACF,wDAA6B;AAC7B;AACA;ACmCA,IAAM,iBAAA,EAAmB,GAAA;AACzB,IAAM,cAAA,EAAgB,EAAA,EAAI,KAAA,EAAO,IAAA;AAKjC,SAAS,gBAAA,CAAiB,WAAA,EAAkD;AAC1E,EAAA,GAAA,CAAI,iBAAC,WAAA,mBAAY,IAAA,6BAAM,QAAA,EAAQ,OAAO,KAAA,CAAA;AACtC,EAAA,MAAM,YAAA,EAAc,WAAA,CAAY,IAAA,CAAK,MAAA,CAAO,IAAA,CAAK,CAAC,CAAA,EAAA,GAAM,CAAA,CAAE,OAAA,IAAW,kBAAkB,CAAA;AACvF,EAAA,uBAAO,WAAA,6BAAa,MAAA;AACtB;AAKA,SAAS,WAAA,CAAY,WAAA,EAA8C;AACjE,EAAA,MAAM,KAAA,kBAAO,WAAA,qBAAY,cAAA,4BAAA,CAAiB,CAAC,CAAA,6BAAG,MAAA,4BAAA,CAAS,CAAC,CAAA,6BAAG,MAAA;AAC3D,EAAA,GAAA,CAAI,KAAA,IAAS,IAAA,GAAO,KAAA,IAAS,IAAA,EAAM,OAAO,GAAA;AAC1C,EAAA,GAAA,CAAI,KAAA,IAAS,IAAA,GAAO,KAAA,IAAS,IAAA,EAAM,OAAO,GAAA;AAC1C,EAAA,OAAO,EAAA;AACT;AAKO,SAAS,6BAAA,CAA8B,MAAA,EAG5C;AACA,EAAA,MAAM,aAAA,EAAkC,CAAC,CAAA;AACzC,EAAA,MAAM,QAAA,EAA0B,CAAC,CAAA;AAEjC,EAAA,IAAA,CAAA,IAAS,EAAA,EAAI,CAAA,EAAG,EAAA,EAAI,MAAA,CAAO,KAAA,CAAM,MAAA,EAAQ,CAAA,EAAA,EAAK;AAC5C,IAAA,MAAM,MAAA,EAAQ,MAAA,CAAO,KAAA,CAAM,CAAC,CAAA;AAC5B,IAAA,GAAA,CAAI,CAAC,KAAA,CAAM,QAAA,EAAU;AACnB,MAAA,OAAA,CAAQ,IAAA,CAAK,EAAE,KAAA,EAAO,CAAA,EAAG,MAAA,EAAQ,wBAAwB,CAAC,CAAA;AAC1D,MAAA,QAAA;AAAA,IACF;AAEA,IAAA,GAAA,CAAI,KAAA,CAAM,QAAA,CAAS,aAAA,IAAiB,aAAA,EAAe;AAEjD,MAAA,QAAA;AAAA,IACF;AAEA,IAAA,GAAA,CAAI,YAAA,CAAa,OAAA,GAAU,gBAAA,EAAkB;AAC3C,MAAA,OAAA,CAAQ,IAAA,CAAK,EAAE,KAAA,EAAO,CAAA,EAAG,MAAA,EAAQ,CAAA,WAAA,EAAc,gBAAgB,CAAA,sBAAA,EAAyB,CAAC,CAAA;AACzF,MAAA,QAAA;AAAA,IACF;AAEA,IAAA,YAAA,CAAa,IAAA,CAAK,KAAA,CAAM,QAA2B,CAAA;AAAA,EACrD;AAEA,EAAA,OAAO,EAAE,YAAA,EAAc,QAAQ,CAAA;AACjC;AAKO,SAAS,4BAAA,CACd,WAAA,EACA,KAAA,EACkE;AAClE,EAAA,MAAM,UAAA,EAAY,gBAAA,CAAiB,WAAW,CAAA;AAE9C,EAAA,GAAA,CAAI,CAAC,SAAA,EAAW;AACd,IAAA,OAAO;AAAA,MACL,OAAA,EAAS;AAAA,QACP,KAAA;AAAA,QACA,MAAA,EAAQ,2CAAA;AAAA,QACR,YAAA,EAAc;AAAA,MAChB;AAAA,IACF,CAAA;AAAA,EACF;AAEA,EAAA,MAAM,aAAA,EAAe,2CAAA,SAAqB,CAAA;AAC1C,EAAA,GAAA,CAAI,CAAC,YAAA,EAAc;AACjB,IAAA,OAAO;AAAA,MACL,OAAA,EAAS;AAAA,QACP,KAAA;AAAA,QACA,SAAA;AAAA,QACA,MAAA,EAAQ,CAAA,oBAAA,EAAuB,SAAS,CAAA,CAAA;AAC1B,QAAA;AAChB,MAAA;AACF,IAAA;AACF,EAAA;AAEwC,EAAA;AAGpC,EAAA;AACO,EAAA;AACS,EAAA;AAEqB,EAAA;AACL,IAAA;AACO,IAAA;AACP,EAAA;AACd,IAAA;AACJ,IAAA;AACX,EAAA;AACE,IAAA;AACI,MAAA;AACP,QAAA;AACA,QAAA;AACQ,QAAA;AACM,QAAA;AAChB,MAAA;AACF,IAAA;AACF,EAAA;AAGmC,EAAA;AACd,EAAA;AACZ,IAAA;AACI,MAAA;AACP,QAAA;AACA,QAAA;AACQ,QAAA;AACM,QAAA;AAChB,MAAA;AACF,IAAA;AACF,EAAA;AAGI,EAAA;AACA,EAAA;AACiC,EAAA;AACU,IAAA;AACA,IAAA;AAC/C,EAAA;AAEsC,EAAA;AACrB,IAAA;AAEc,IAAA;AAC7B,IAAA;AAC6B,IAAA;AAC7B,IAAA;AACA,IAAA;AACA,IAAA;AACA,IAAA;AACkC,IAAA;AAClC,IAAA;AACF,EAAA;AAE+B,EAAA;AACjC;AAKqE;AAE1C,EAAA;AACQ,EAAA;AACxB,IAAA;AACG,MAAA;AACG,MAAA;AACD,MAAA;AACM,MAAA;AAClB,IAAA;AACF,EAAA;AAEe,EAAA;AAGmB,EAAA;AAGO,EAAA;AACK,EAAA;AAEA,EAAA;AACA,IAAA;AAEf,IAAA;AACK,MAAA;AAC3B,IAAA;AACyB,MAAA;AAChC,IAAA;AACF,EAAA;AAEO,EAAA;AACI,IAAA;AACT,IAAA;AACS,IAAA;AACoB,IAAA;AAC/B,EAAA;AACF;ADvFiD;AACA;AACA;AACA;AACA;AACA;AACA;AACA","file":"/home/runner/work/fhir-brasil/fhir-brasil/packages/core/dist/chunk-ZG76LN6Q.cjs","sourcesContent":[null,"/**\n * FHIR Importer\n *\n * Parses FHIR R4 Bundles and extracts Observation resources with known LOINC codes,\n * mapping them to internal biomarker codes for storage as lab results.\n */\n\nimport { getDefinitionByLoinc, loincToCode } from './biomarkers';\nimport type { FHIRBundle, FHIRObservation } from './fhir-types';\nimport { validateFHIRImportBundle } from './validators';\n\nexport interface ImportedObservation {\n biomarkerCode: string;\n biomarkerName: string;\n collectionDate: string;\n flag: 'H' | 'L' | '';\n isQualitative: boolean;\n loincCode: string;\n referenceMax?: number;\n referenceMin?: number;\n unit: string;\n value: number | string;\n}\n\nexport interface SkippedEntry {\n index: number;\n loincCode?: string;\n reason: string;\n resourceType?: string;\n}\n\nexport interface ImportError {\n details: string;\n field: string;\n}\n\nexport interface FHIRImportResult {\n errors: ImportError[];\n imported: ImportedObservation[];\n skipped: SkippedEntry[];\n totalProcessed: number;\n}\n\nconst MAX_OBSERVATIONS = 1000;\nconst MAX_FILE_SIZE = 5 * 1024 * 1024; // 5MB\n\n/**\n * Extract LOINC code from an Observation's code.coding array\n */\nfunction extractLoincCode(observation: FHIRObservation): string | undefined {\n if (!observation.code?.coding) return undefined;\n const loincCoding = observation.code.coding.find((c) => c.system === 'http://loinc.org');\n return loincCoding?.code;\n}\n\n/**\n * Extract interpretation flag from Observation\n */\nfunction extractFlag(observation: FHIRObservation): 'H' | 'L' | '' {\n const code = observation.interpretation?.[0]?.coding?.[0]?.code;\n if (code === 'H' || code === 'HH') return 'H';\n if (code === 'L' || code === 'LL') return 'L';\n return '';\n}\n\n/**\n * Extract Observation resources from a FHIR Bundle\n */\nexport function extractObservationsFromBundle(bundle: FHIRBundle): {\n observations: FHIRObservation[];\n skipped: SkippedEntry[];\n} {\n const observations: FHIRObservation[] = [];\n const skipped: SkippedEntry[] = [];\n\n for (let i = 0; i < bundle.entry.length; i++) {\n const entry = bundle.entry[i]!;\n if (!entry.resource) {\n skipped.push({ index: i, reason: 'Entry has no resource' });\n continue;\n }\n\n if (entry.resource.resourceType !== 'Observation') {\n // Non-observation resources are silently skipped (Patient, DiagnosticReport, etc.)\n continue;\n }\n\n if (observations.length >= MAX_OBSERVATIONS) {\n skipped.push({ index: i, reason: `Maximum of ${MAX_OBSERVATIONS} observations exceeded` });\n continue;\n }\n\n observations.push(entry.resource as FHIRObservation);\n }\n\n return { observations, skipped };\n}\n\n/**\n * Map a FHIR Observation to internal format using LOINC→biomarker code lookup\n */\nexport function mapFHIRObservationToInternal(\n observation: FHIRObservation,\n index: number,\n): { observation: ImportedObservation } | { skipped: SkippedEntry } {\n const loincCode = extractLoincCode(observation);\n\n if (!loincCode) {\n return {\n skipped: {\n index,\n reason: 'No LOINC code found in observation coding',\n resourceType: 'Observation',\n },\n };\n }\n\n const internalCode = loincToCode(loincCode);\n if (!internalCode) {\n return {\n skipped: {\n index,\n loincCode,\n reason: `Unknown LOINC code: ${loincCode}`,\n resourceType: 'Observation',\n },\n };\n }\n\n const definition = getDefinitionByLoinc(loincCode);\n\n // Extract value\n let value: number | string;\n let unit = '';\n let isQualitative = false;\n\n if (observation.valueQuantity?.value !== undefined) {\n value = observation.valueQuantity.value;\n unit = observation.valueQuantity.unit || observation.valueQuantity.code || '';\n } else if (observation.valueString) {\n value = observation.valueString;\n isQualitative = true;\n } else {\n return {\n skipped: {\n index,\n loincCode,\n reason: 'Observation has no value (valueQuantity or valueString)',\n resourceType: 'Observation',\n },\n };\n }\n\n // Extract collection date (effectiveDateTime or effectivePeriod.start)\n const collectionDate = observation.effectiveDateTime || observation.effectivePeriod?.start || '';\n if (!collectionDate) {\n return {\n skipped: {\n index,\n loincCode,\n reason: 'Observation has no effectiveDateTime or effectivePeriod.start',\n resourceType: 'Observation',\n },\n };\n }\n\n // Extract reference ranges\n let referenceMin: number | undefined;\n let referenceMax: number | undefined;\n if (observation.referenceRange?.[0]) {\n referenceMin = observation.referenceRange[0].low?.value;\n referenceMax = observation.referenceRange[0].high?.value;\n }\n\n const imported: ImportedObservation = {\n biomarkerCode: internalCode,\n biomarkerName:\n definition?.names.pt[0] || definition?.names.en[0] || observation.code.text || internalCode,\n collectionDate,\n flag: extractFlag(observation),\n isQualitative,\n loincCode,\n referenceMax,\n referenceMin,\n unit: unit || definition?.unit || '',\n value,\n };\n\n return { observation: imported };\n}\n\n/**\n * Process a complete FHIR Bundle for import\n */\nexport function processImportBundle(data: unknown): FHIRImportResult {\n // Structural validation\n const validationErrors = validateFHIRImportBundle(data);\n if (validationErrors.length > 0) {\n return {\n errors: validationErrors,\n imported: [],\n skipped: [],\n totalProcessed: 0,\n };\n }\n\n const bundle = data as FHIRBundle;\n\n // Extract observations\n const { observations, skipped } = extractObservationsFromBundle(bundle);\n\n // Map each observation to internal format\n const imported: ImportedObservation[] = [];\n const allSkipped: SkippedEntry[] = [...skipped];\n\n for (let i = 0; i < observations.length; i++) {\n const result = mapFHIRObservationToInternal(observations[i]!, i);\n\n if ('observation' in result) {\n imported.push(result.observation);\n } else {\n allSkipped.push(result.skipped);\n }\n }\n\n return {\n errors: [],\n imported,\n skipped: allSkipped,\n totalProcessed: observations.length,\n };\n}\n\nexport { MAX_FILE_SIZE, MAX_OBSERVATIONS };\n"]}
|
package/dist/cli.js
CHANGED
|
@@ -2563,7 +2563,7 @@ var BIOMARKER_DEFINITIONS = [
|
|
|
2563
2563
|
{
|
|
2564
2564
|
category: "autoimunidade",
|
|
2565
2565
|
code: "C3",
|
|
2566
|
-
loinc: "4485-
|
|
2566
|
+
loinc: "4485-9",
|
|
2567
2567
|
names: {
|
|
2568
2568
|
en: ["Complement C3", "C3"],
|
|
2569
2569
|
pt: ["Complemento C3", "C3", "Fra\xE7\xE3o C3 do Complemento"]
|
|
@@ -2573,7 +2573,7 @@ var BIOMARKER_DEFINITIONS = [
|
|
|
2573
2573
|
{
|
|
2574
2574
|
category: "autoimunidade",
|
|
2575
2575
|
code: "C4",
|
|
2576
|
-
loinc: "4498-
|
|
2576
|
+
loinc: "4498-2",
|
|
2577
2577
|
names: {
|
|
2578
2578
|
en: ["Complement C4", "C4"],
|
|
2579
2579
|
pt: ["Complemento C4", "C4", "Fra\xE7\xE3o C4 do Complemento"]
|
|
@@ -2639,7 +2639,7 @@ var BIOMARKER_DEFINITIONS = [
|
|
|
2639
2639
|
{
|
|
2640
2640
|
category: "nutrientes",
|
|
2641
2641
|
code: "Selenium",
|
|
2642
|
-
loinc: "
|
|
2642
|
+
loinc: "5724-0",
|
|
2643
2643
|
names: {
|
|
2644
2644
|
en: ["Selenium", "Se"],
|
|
2645
2645
|
pt: ["Sel\xEAnio", "Se"]
|
|
@@ -4271,11 +4271,6 @@ var biomarkerRangeDefinitions = {
|
|
|
4271
4271
|
default: { max: 10, min: 0, optimalMax: 7, optimalMin: 0, unit: "mg/dL" },
|
|
4272
4272
|
source: "khetarpal-apociii-2016"
|
|
4273
4273
|
},
|
|
4274
|
-
// ApoCIII/ApoA1 Ratio: derivado de ApoCIII (~10 mg/dL) e ApoA1 (~100-150 mg/dL)
|
|
4275
|
-
// NOTA: corte de 0.15 sem fonte publicada — valor calculado, não validado clinicamente
|
|
4276
|
-
ApoCIII_ApoA1_Ratio: {
|
|
4277
|
-
default: { max: 0.15, min: 0, optimalMax: 0.1, optimalMin: 0, unit: "" }
|
|
4278
|
-
},
|
|
4279
4274
|
Omega6_AA: {
|
|
4280
4275
|
default: { max: 15, min: 5, optimalMax: 12, optimalMin: 7, unit: "%" },
|
|
4281
4276
|
source: "simopoulos-omega-ratio-2002"
|
|
@@ -6192,7 +6187,7 @@ async function main() {
|
|
|
6192
6187
|
strict: false
|
|
6193
6188
|
});
|
|
6194
6189
|
if (values.version) {
|
|
6195
|
-
process.stdout.write(`${"0.17.
|
|
6190
|
+
process.stdout.write(`${"0.17.3"}
|
|
6196
6191
|
`);
|
|
6197
6192
|
return;
|
|
6198
6193
|
}
|
package/dist/converter.cjs
CHANGED
|
@@ -3,13 +3,13 @@
|
|
|
3
3
|
|
|
4
4
|
|
|
5
5
|
|
|
6
|
-
var
|
|
7
|
-
require('./chunk-
|
|
6
|
+
var _chunkYKTVS7ZUcjs = require('./chunk-YKTVS7ZU.cjs');
|
|
7
|
+
require('./chunk-PYZ6QR6U.cjs');
|
|
8
8
|
require('./chunk-MJ254F5K.cjs');
|
|
9
9
|
|
|
10
10
|
|
|
11
11
|
|
|
12
12
|
|
|
13
13
|
|
|
14
|
-
exports.labObservationToFHIR =
|
|
14
|
+
exports.labObservationToFHIR = _chunkYKTVS7ZUcjs.labObservationToFHIR; exports.labReportToFHIR = _chunkYKTVS7ZUcjs.labReportToFHIR; exports.labResultToFHIRBundle = _chunkYKTVS7ZUcjs.labResultToFHIRBundle; exports.userProfileToFHIR = _chunkYKTVS7ZUcjs.userProfileToFHIR;
|
|
15
15
|
//# sourceMappingURL=converter.cjs.map
|
package/dist/converter.js
CHANGED
|
@@ -3,8 +3,8 @@ import {
|
|
|
3
3
|
labReportToFHIR,
|
|
4
4
|
labResultToFHIRBundle,
|
|
5
5
|
userProfileToFHIR
|
|
6
|
-
} from "./chunk-
|
|
7
|
-
import "./chunk-
|
|
6
|
+
} from "./chunk-7OP4ZWLI.js";
|
|
7
|
+
import "./chunk-G2ECAN5M.js";
|
|
8
8
|
import "./chunk-R4MUCMO3.js";
|
|
9
9
|
export {
|
|
10
10
|
labObservationToFHIR,
|
package/dist/importer.cjs
CHANGED
|
@@ -4,8 +4,8 @@
|
|
|
4
4
|
|
|
5
5
|
|
|
6
6
|
|
|
7
|
-
var
|
|
8
|
-
require('./chunk-
|
|
7
|
+
var _chunkZG76LN6Qcjs = require('./chunk-ZG76LN6Q.cjs');
|
|
8
|
+
require('./chunk-PYZ6QR6U.cjs');
|
|
9
9
|
require('./chunk-3ILBFLVQ.cjs');
|
|
10
10
|
|
|
11
11
|
|
|
@@ -13,5 +13,5 @@ require('./chunk-3ILBFLVQ.cjs');
|
|
|
13
13
|
|
|
14
14
|
|
|
15
15
|
|
|
16
|
-
exports.MAX_FILE_SIZE =
|
|
16
|
+
exports.MAX_FILE_SIZE = _chunkZG76LN6Qcjs.MAX_FILE_SIZE; exports.MAX_OBSERVATIONS = _chunkZG76LN6Qcjs.MAX_OBSERVATIONS; exports.extractObservationsFromBundle = _chunkZG76LN6Qcjs.extractObservationsFromBundle; exports.mapFHIRObservationToInternal = _chunkZG76LN6Qcjs.mapFHIRObservationToInternal; exports.processImportBundle = _chunkZG76LN6Qcjs.processImportBundle;
|
|
17
17
|
//# sourceMappingURL=importer.cjs.map
|
package/dist/importer.js
CHANGED
|
@@ -4,8 +4,8 @@ import {
|
|
|
4
4
|
extractObservationsFromBundle,
|
|
5
5
|
mapFHIRObservationToInternal,
|
|
6
6
|
processImportBundle
|
|
7
|
-
} from "./chunk-
|
|
8
|
-
import "./chunk-
|
|
7
|
+
} from "./chunk-VPR5SEUX.js";
|
|
8
|
+
import "./chunk-G2ECAN5M.js";
|
|
9
9
|
import "./chunk-N3ZCOLG2.js";
|
|
10
10
|
export {
|
|
11
11
|
MAX_FILE_SIZE,
|
package/dist/index.cjs
CHANGED
|
@@ -3,14 +3,14 @@
|
|
|
3
3
|
|
|
4
4
|
|
|
5
5
|
|
|
6
|
-
var
|
|
6
|
+
var _chunkYKTVS7ZUcjs = require('./chunk-YKTVS7ZU.cjs');
|
|
7
7
|
|
|
8
8
|
|
|
9
9
|
|
|
10
10
|
|
|
11
11
|
|
|
12
12
|
|
|
13
|
-
var
|
|
13
|
+
var _chunkZG76LN6Qcjs = require('./chunk-ZG76LN6Q.cjs');
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
|
|
@@ -43,7 +43,7 @@ var _chunkN5BYRLCCcjs = require('./chunk-N5BYRLCC.cjs');
|
|
|
43
43
|
|
|
44
44
|
|
|
45
45
|
|
|
46
|
-
var
|
|
46
|
+
var _chunkPYZ6QR6Ucjs = require('./chunk-PYZ6QR6U.cjs');
|
|
47
47
|
|
|
48
48
|
|
|
49
49
|
|
|
@@ -51,7 +51,7 @@ var _chunk73PI5ZLRcjs = require('./chunk-73PI5ZLR.cjs');
|
|
|
51
51
|
|
|
52
52
|
|
|
53
53
|
|
|
54
|
-
var
|
|
54
|
+
var _chunkCBGEU6SGcjs = require('./chunk-CBGEU6SG.cjs');
|
|
55
55
|
|
|
56
56
|
|
|
57
57
|
|
|
@@ -228,7 +228,7 @@ function interventionToFHIRObservation(intervention, patientId) {
|
|
|
228
228
|
}
|
|
229
229
|
function interventionsToFHIRBundle(interventions, userProfile) {
|
|
230
230
|
const patientId = userProfile.userId;
|
|
231
|
-
const fhirPatient =
|
|
231
|
+
const fhirPatient = _chunkYKTVS7ZUcjs.userProfileToFHIR.call(void 0, userProfile);
|
|
232
232
|
const entries = interventions.map((intervention) => {
|
|
233
233
|
const isMedication = intervention.type === "medication" || intervention.type === "supplement";
|
|
234
234
|
const resource = isMedication ? interventionToFHIRMedicationStatement(intervention, patientId) : interventionToFHIRObservation(intervention, patientId);
|
|
@@ -691,5 +691,5 @@ function cnsToFHIRIdentifier(cns) {
|
|
|
691
691
|
|
|
692
692
|
|
|
693
693
|
|
|
694
|
-
exports.AGE_BRACKETS = AGE_BRACKETS; exports.BIOMARKER_DEFAULT_UNIT = _chunkMJ254F5Kcjs.BIOMARKER_DEFAULT_UNIT; exports.BIOMARKER_DEFINITIONS =
|
|
694
|
+
exports.AGE_BRACKETS = AGE_BRACKETS; exports.BIOMARKER_DEFAULT_UNIT = _chunkMJ254F5Kcjs.BIOMARKER_DEFAULT_UNIT; exports.BIOMARKER_DEFINITIONS = _chunkPYZ6QR6Ucjs.BIOMARKER_DEFINITIONS; exports.BIOMARKER_UNITS = _chunkMJ254F5Kcjs.BIOMARKER_UNITS; exports.BODY_FAT_ZONES = BODY_FAT_ZONES; exports.CAC_INDICATOR_CODES = _chunkPYZ6QR6Ucjs.CAC_INDICATOR_CODES; exports.CATEGORY_GROUPS = CATEGORY_GROUPS; exports.CATEGORY_SCREENING_INTERVALS = CATEGORY_SCREENING_INTERVALS; exports.DEXA_CATEGORIES = _chunkPYZ6QR6Ucjs.DEXA_CATEGORIES; exports.DEXA_INDICATOR_CODES = _chunkPYZ6QR6Ucjs.DEXA_INDICATOR_CODES; exports.MAX_FILE_SIZE = _chunkZG76LN6Qcjs.MAX_FILE_SIZE; exports.MAX_OBSERVATIONS = _chunkZG76LN6Qcjs.MAX_OBSERVATIONS; exports.T_SCORE_ZONES = T_SCORE_ZONES; exports.UNIT_TO_UCUM = _chunkMJ254F5Kcjs.UNIT_TO_UCUM; exports.ZONE_DEFS = ZONE_DEFS; exports.applyFallbackReferenceRanges = _chunkCBGEU6SGcjs.applyFallbackReferenceRanges; exports.biomarkerRangeDefinitions = _chunkCBGEU6SGcjs.biomarkerRangeDefinitions; exports.calculateNextScreeningDate = calculateNextScreeningDate; exports.cnsToFHIRIdentifier = cnsToFHIRIdentifier; exports.codeToLoinc = _chunkPYZ6QR6Ucjs.codeToLoinc; exports.convertUnit = _chunkMJ254F5Kcjs.convertUnit; exports.cpfToFHIRIdentifier = cpfToFHIRIdentifier; exports.defaultReferenceRanges = _chunkCBGEU6SGcjs.defaultReferenceRanges; exports.extractObservationsFromBundle = _chunkZG76LN6Qcjs.extractObservationsFromBundle; exports.filterVisibleBiomarkers = _chunkPYZ6QR6Ucjs.filterVisibleBiomarkers; exports.findCodeByName = _chunkPYZ6QR6Ucjs.findCodeByName; exports.formatCNS = formatCNS; exports.formatCPF = formatCPF; exports.generateCacFullReference = _chunkPYZ6QR6Ucjs.generateCacFullReference; exports.generateDexaFullReference = _chunkPYZ6QR6Ucjs.generateDexaFullReference; exports.generateFilteredLLMReference = _chunkPYZ6QR6Ucjs.generateFilteredLLMReference; exports.generateLLMReference = _chunkPYZ6QR6Ucjs.generateLLMReference; exports.getAllCodes = _chunkPYZ6QR6Ucjs.getAllCodes; exports.getAllDefinitions = _chunkPYZ6QR6Ucjs.getAllDefinitions; exports.getAllLoincCodes = _chunkPYZ6QR6Ucjs.getAllLoincCodes; exports.getAllSearchPatterns = _chunkPYZ6QR6Ucjs.getAllSearchPatterns; exports.getBiomarkersByCategory = _chunkPYZ6QR6Ucjs.getBiomarkersByCategory; exports.getBiomarkersForCategories = _chunkPYZ6QR6Ucjs.getBiomarkersForCategories; exports.getCanonicalUnit = _chunkMJ254F5Kcjs.getCanonicalUnit; exports.getCategoriesByInterval = getCategoriesByInterval; exports.getCategoryGroup = getCategoryGroup; exports.getDaysUntilScreening = getDaysUntilScreening; exports.getDefaultUnit = _chunkMJ254F5Kcjs.getDefaultUnit; exports.getDefinitionByCode = _chunkPYZ6QR6Ucjs.getDefinitionByCode; exports.getDefinitionByLoinc = _chunkPYZ6QR6Ucjs.getDefinitionByLoinc; exports.getDefinitionsBySex = _chunkPYZ6QR6Ucjs.getDefinitionsBySex; exports.getDueCategories = getDueCategories; exports.getFallbackReferenceRange = _chunkCBGEU6SGcjs.getFallbackReferenceRange; exports.getRangeDirection = _chunkCBGEU6SGcjs.getRangeDirection; exports.getReferenceRange = _chunkCBGEU6SGcjs.getReferenceRange; exports.getSIUnit = _chunkMJ254F5Kcjs.getSIUnit; exports.getScreeningInterval = getScreeningInterval; exports.getSexForCode = _chunkPYZ6QR6Ucjs.getSexForCode; exports.getVisibleDefinitions = _chunkPYZ6QR6Ucjs.getVisibleDefinitions; exports.interventionToFHIRMedicationStatement = interventionToFHIRMedicationStatement; exports.interventionToFHIRObservation = interventionToFHIRObservation; exports.interventionsToFHIRBundle = interventionsToFHIRBundle; exports.isBiomarkerVisible = _chunkPYZ6QR6Ucjs.isBiomarkerVisible; exports.isCacDocument = _chunkPYZ6QR6Ucjs.isCacDocument; exports.isDexaDocument = _chunkPYZ6QR6Ucjs.isDexaDocument; exports.isScreeningDue = isScreeningDue; exports.isValidCode = _chunkPYZ6QR6Ucjs.isValidCode; exports.isValidLoinc = _chunkPYZ6QR6Ucjs.isValidLoinc; exports.labObservationToFHIR = _chunkYKTVS7ZUcjs.labObservationToFHIR; exports.labReportToFHIR = _chunkYKTVS7ZUcjs.labReportToFHIR; exports.labResultToFHIRBundle = _chunkYKTVS7ZUcjs.labResultToFHIRBundle; exports.listMappedSubcategories = listMappedSubcategories; exports.loincToCode = _chunkPYZ6QR6Ucjs.loincToCode; exports.mapFHIRObservationToInternal = _chunkZG76LN6Qcjs.mapFHIRObservationToInternal; exports.normalizeCode = _chunkPYZ6QR6Ucjs.normalizeCode; exports.plural = plural; exports.pluralCount = pluralCount; exports.pluralPhrase = pluralPhrase; exports.pluralPhraseCount = pluralPhraseCount; exports.processImportBundle = _chunkZG76LN6Qcjs.processImportBundle; exports.toBiomarkerTests = _chunkPYZ6QR6Ucjs.toBiomarkerTests; exports.unitToUCUM = _chunkMJ254F5Kcjs.unitToUCUM; exports.userProfileToFHIR = _chunkYKTVS7ZUcjs.userProfileToFHIR; exports.validateCNS = validateCNS; exports.validateCPF = validateCPF; exports.validateFHIRDiagnosticReport = _chunk3ILBFLVQcjs.validateFHIRDiagnosticReport; exports.validateFHIRImportBundle = _chunk3ILBFLVQcjs.validateFHIRImportBundle; exports.validateFHIRObservation = _chunk3ILBFLVQcjs.validateFHIRObservation; exports.validateLoincNameMatch = _chunkPYZ6QR6Ucjs.validateLoincNameMatch;
|
|
695
695
|
//# sourceMappingURL=index.cjs.map
|
package/dist/index.js
CHANGED
|
@@ -3,14 +3,14 @@ import {
|
|
|
3
3
|
labReportToFHIR,
|
|
4
4
|
labResultToFHIRBundle,
|
|
5
5
|
userProfileToFHIR
|
|
6
|
-
} from "./chunk-
|
|
6
|
+
} from "./chunk-7OP4ZWLI.js";
|
|
7
7
|
import {
|
|
8
8
|
MAX_FILE_SIZE,
|
|
9
9
|
MAX_OBSERVATIONS,
|
|
10
10
|
extractObservationsFromBundle,
|
|
11
11
|
mapFHIRObservationToInternal,
|
|
12
12
|
processImportBundle
|
|
13
|
-
} from "./chunk-
|
|
13
|
+
} from "./chunk-VPR5SEUX.js";
|
|
14
14
|
import {
|
|
15
15
|
BIOMARKER_DEFINITIONS,
|
|
16
16
|
CAC_INDICATOR_CODES,
|
|
@@ -43,7 +43,7 @@ import {
|
|
|
43
43
|
normalizeCode,
|
|
44
44
|
toBiomarkerTests,
|
|
45
45
|
validateLoincNameMatch
|
|
46
|
-
} from "./chunk-
|
|
46
|
+
} from "./chunk-G2ECAN5M.js";
|
|
47
47
|
import {
|
|
48
48
|
applyFallbackReferenceRanges,
|
|
49
49
|
biomarkerRangeDefinitions,
|
|
@@ -51,7 +51,7 @@ import {
|
|
|
51
51
|
getFallbackReferenceRange,
|
|
52
52
|
getRangeDirection,
|
|
53
53
|
getReferenceRange
|
|
54
|
-
} from "./chunk-
|
|
54
|
+
} from "./chunk-LR2OUVOA.js";
|
|
55
55
|
import {
|
|
56
56
|
BIOMARKER_DEFAULT_UNIT,
|
|
57
57
|
BIOMARKER_UNITS,
|
|
@@ -5,7 +5,7 @@
|
|
|
5
5
|
|
|
6
6
|
|
|
7
7
|
|
|
8
|
-
var
|
|
8
|
+
var _chunkCBGEU6SGcjs = require('./chunk-CBGEU6SG.cjs');
|
|
9
9
|
require('./chunk-MJ254F5K.cjs');
|
|
10
10
|
|
|
11
11
|
|
|
@@ -14,5 +14,5 @@ require('./chunk-MJ254F5K.cjs');
|
|
|
14
14
|
|
|
15
15
|
|
|
16
16
|
|
|
17
|
-
exports.applyFallbackReferenceRanges =
|
|
17
|
+
exports.applyFallbackReferenceRanges = _chunkCBGEU6SGcjs.applyFallbackReferenceRanges; exports.biomarkerRangeDefinitions = _chunkCBGEU6SGcjs.biomarkerRangeDefinitions; exports.defaultReferenceRanges = _chunkCBGEU6SGcjs.defaultReferenceRanges; exports.getFallbackReferenceRange = _chunkCBGEU6SGcjs.getFallbackReferenceRange; exports.getRangeDirection = _chunkCBGEU6SGcjs.getRangeDirection; exports.getReferenceRange = _chunkCBGEU6SGcjs.getReferenceRange;
|
|
18
18
|
//# sourceMappingURL=reference-ranges.cjs.map
|
package/dist/reference-ranges.js
CHANGED
package/package.json
CHANGED