@precisa-saude/fhir 0.15.0 → 0.15.2
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- package/dist/biomarkers.cjs +2 -2
- package/dist/biomarkers.js +1 -1
- package/dist/{chunk-EW5GLFSC.cjs → chunk-3NZA6WMU.cjs} +23 -5
- package/dist/chunk-3NZA6WMU.cjs.map +1 -0
- package/dist/{chunk-4YQOKZX7.js → chunk-4I5G4SJ6.js} +2 -2
- package/dist/{chunk-NR4OTNC4.js → chunk-5BDMX2JP.js} +2 -2
- package/dist/{chunk-ICSMWCVT.js → chunk-FEVGNEFO.js} +23 -5
- package/dist/chunk-FEVGNEFO.js.map +1 -0
- package/dist/{chunk-OPS7XHIL.cjs → chunk-Q3O23BM7.cjs} +3 -3
- package/dist/{chunk-OPS7XHIL.cjs.map → chunk-Q3O23BM7.cjs.map} +1 -1
- package/dist/{chunk-KIYE6S66.js → chunk-V5X3RU6M.js} +75 -10
- package/dist/chunk-V5X3RU6M.js.map +1 -0
- package/dist/{chunk-NOJRDKFO.cjs → chunk-Y2SVZ6GE.cjs} +4 -4
- package/dist/{chunk-NOJRDKFO.cjs.map → chunk-Y2SVZ6GE.cjs.map} +1 -1
- package/dist/{chunk-3IOAP7CG.cjs → chunk-ZKN5UI7R.cjs} +75 -10
- package/dist/chunk-ZKN5UI7R.cjs.map +1 -0
- package/dist/cli.js +97 -14
- package/dist/converter.cjs +3 -3
- package/dist/converter.js +2 -2
- package/dist/importer.cjs +3 -3
- package/dist/importer.js +2 -2
- package/dist/index.cjs +6 -6
- package/dist/index.js +4 -4
- package/dist/reference-ranges.cjs +2 -2
- package/dist/reference-ranges.js +1 -1
- package/package.json +1 -1
- package/dist/chunk-3IOAP7CG.cjs.map +0 -1
- package/dist/chunk-EW5GLFSC.cjs.map +0 -1
- package/dist/chunk-ICSMWCVT.js.map +0 -1
- package/dist/chunk-KIYE6S66.js.map +0 -1
- /package/dist/{chunk-4YQOKZX7.js.map → chunk-4I5G4SJ6.js.map} +0 -0
- /package/dist/{chunk-NR4OTNC4.js.map → chunk-5BDMX2JP.js.map} +0 -0
package/dist/cli.js
CHANGED
|
@@ -158,9 +158,13 @@ var BIOMARKER_DEFINITIONS = [
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unit: "nmol/L"
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},
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{
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+
// LOINC 43583-4 = "Lipoprotein a [Moles/volume] in Serum or Plasma" (nmol/L).
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// Anteriormente 10835-7 ("Lipoprotein a [Mass/volume]", mg/dL),
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// incompatível com a unidade nmol/L declarada. SBC 2025 recomenda
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164
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// ensaio independente de isoforma reportado em nmol/L.
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category: "coracao",
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code: "Lipoprotein_a",
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-
loinc: "
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loinc: "43583-4",
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names: {
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en: ["Lipoprotein (a)", "Lp(a)"],
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pt: ["Lipoprote\xEDna (a)", "Lp(a)"]
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@@ -1006,9 +1010,18 @@ var BIOMARKER_DEFINITIONS = [
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unit: "nmol/L"
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},
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{
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1013
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// LOINC 99620-7 = "Omega 3 fatty acids (w3) [Moles/volume] in RBC.lysate".
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1014
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// Alinha à matriz das entradas irmãs Omega3_EPA (75097-6) e Omega3_DHA
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1015
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// (75095-0), ambas em hemácias. Anteriormente 35178-3 (mesmo analito em
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1016
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// Ser/Plas), incompatível com o uso clínico do Índice Ômega-3 (Harris &
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1017
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// von Schacky 2004), que é definido em membranas de hemácias.
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1018
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// Ressalva: LOINC declara moles/volume; o biomarcador armazena %.
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1019
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// Não há LOINC vigente para "Omega 3 total em % em RBC" — o `Omega3_Index`
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1020
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// (88998-0) cobre apenas EPA+DHA. Mantemos `unit: '%'` por consistência
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1021
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// com EPA/DHA (75095-0/75097-6 são [Entitic substance], também não-%).
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category: "nutrientes",
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code: "Omega3_Total",
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-
loinc: "
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loinc: "99620-7",
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1025
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names: {
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en: ["Omega-3 Total", "Total Omega-3"],
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pt: ["\xD4mega-3 Total"]
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@@ -1480,11 +1493,16 @@ var BIOMARKER_DEFINITIONS = [
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unit: "mg/L"
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},
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{
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1496
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// LOINC 3091-6 = "Urea [Mass/volume] in Serum or Plasma" (mg/dL).
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1497
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// Anteriormente 3094-0 ("Urea nitrogen", BUN), inconsistente com a faixa
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1498
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// de referência brasileira (15-50 mg/dL) e com os nomes pt-BR (Ureia).
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1499
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// Aliases 'BUN' e 'Blood Urea Nitrogen' removidos para evitar matching
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1500
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// de relatórios de BUN contra faixas de Ureia (BUN ≈ Ureia / 2,14).
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category: "rins",
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code: "Urea",
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loinc: "
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loinc: "3091-6",
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names: {
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en: ["
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en: ["Urea"],
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pt: ["Ureia", "Ur\xE9ia"]
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},
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unit: "mg/dL"
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@@ -4180,8 +4198,14 @@ var biomarkerRangeDefinitions = {
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}
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]
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},
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// AMH — fortemente dependente de idade e sexo. As variantes femininas por
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// faixa etária são a referência clínica; o `default` foi ajustado para
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4203
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// refletir uma faixa adulta conservadora (~18-40 anos, mulheres em idade
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4204
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// reprodutiva geral). optimalMax anterior (6.9 ng/mL) sobrepunha-se a
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// valores sugestivos de SOP ou risco de OHSS; clinicamente, valores acima
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// de ~4 ng/mL já merecem investigação.
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AMH: {
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default: { max:
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default: { max: 6, min: 1, optimalMax: 4, optimalMin: 1.5, unit: "ng/mL" },
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source: "tietz-7ed-2015",
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variants: [
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{
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@@ -4319,6 +4343,12 @@ var biomarkerRangeDefinitions = {
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default: { max: 35, min: 0, optimalMax: 20, optimalMin: 0, unit: "pg/mL" },
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source: "sbc-ic-2018"
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},
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4346
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// Razão BUN/Creatinina — faixa 10-20 aplica-se ao Nitrogênio Ureico (BUN).
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// Laboratórios brasileiros que reportam Ureia (e não BUN) usam razão
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// Ureia/Creatinina, cuja faixa normal é aproximadamente 21-43
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// (Ureia ≈ BUN × 2,14). O biomarcador atualmente assume a convenção BUN;
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// consumidores que dosem Ureia devem converter ou reportar como razão
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// distinta. Ver issue #41 para alinhamento de nomenclatura/LOINC.
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BUN_Creatinine_Ratio: {
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default: { max: 20, min: 10, optimalMax: 18, optimalMin: 12, unit: "" },
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source: "tietz-7ed-2015"
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@@ -4388,8 +4418,11 @@ var biomarkerRangeDefinitions = {
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default: { max: 106, min: 98, optimalMax: 105, optimalMin: 100, unit: "mEq/L" },
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source: "tietz-7ed-2015"
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},
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4421
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// Colesterol total — SBC 2017/2025: valor desejável < 190 mg/dL para adultos,
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4422
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// com ou sem jejum. Limite anterior (200 mg/dL) refletia a diretriz ATP III
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// (NCEP, 2002), superada pelas atualizações brasileiras.
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Cholesterol: {
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default: { max:
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default: { max: 190, min: 0, optimalMax: 170, optimalMin: 0, unit: "mg/dL" },
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source: "sbc-lipids-2025"
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},
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// Índice de Castelli I (CT/HDL-c)
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@@ -4745,19 +4778,25 @@ var biomarkerRangeDefinitions = {
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}
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]
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},
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// HDL — SBC 2017/2025: desejável > 40 mg/dL (♂) e > 50 mg/dL (♀).
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// A diretriz NÃO define teto de normalidade — HDL alto é cardioprotetor.
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// Limites superiores anteriormente fixados em 60 mg/dL geravam falsos
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// alertas. Mantém-se `max` apenas como limite técnico do gauge (100 mg/dL),
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4785
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// não como ponto de corte clínico; consumidores devem tratar `direction:
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// higher-better` como sinal autoritativo.
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HDL: {
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-
default: { max:
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default: { max: 100, min: 40, optimalMax: 100, optimalMin: 50, unit: "mg/dL" },
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direction: "higher-better",
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source: "sbc-lipids-2025",
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variants: [
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{
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ageMin: 18,
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-
range: { max:
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range: { max: 100, min: 40, optimalMax: 100, optimalMin: 45, unit: "mg/dL" },
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sex: "M"
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},
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{
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ageMin: 18,
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range: { max:
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range: { max: 100, min: 50, optimalMax: 100, optimalMin: 55, unit: "mg/dL" },
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sex: "F"
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}
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]
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@@ -4974,8 +5013,14 @@ var biomarkerRangeDefinitions = {
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default: { max: 35, min: 15, optimalMax: 28, optimalMin: 18, unit: "%" },
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source: "simopoulos-omega-ratio-2002"
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},
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// Lp(a) — SBC 2025 (seção 3.1.1.2.7): níveis ≥ 50 mg/dL ou ≥ 125 nmol/L são
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5017
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// considerados aumentados, com indicação de rastreamento em cascata familiar.
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// A diretriz recomenda ensaio independente de isoforma medido em nmol/L; a
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// unidade nmol/L é mantida aqui por refletir o padrão laboratorial atual.
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// Limites anteriores (max=75) refletiam pontos de corte expressos em mg/dL,
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// gerando incompatibilidade com a unidade nmol/L declarada.
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Lipoprotein_a: {
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-
default: { max:
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default: { max: 125, min: 0, optimalMax: 75, optimalMin: 0, unit: "nmol/L" },
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direction: "lower-better",
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source: "sbc-lipids-2025"
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},
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@@ -5067,8 +5112,13 @@ var biomarkerRangeDefinitions = {
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default: { max: 8, min: 4, optimalMax: 8, optimalMin: 5.5, unit: "%" },
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source: "harris-omega3-2004"
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},
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5115
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+
// Ômega-3 Total (% de ácidos graxos eritrocitários) — Harris & von Schacky
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5116
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// (2004) propõem ≥ 8% como zona ótima de proteção cardiovascular; valores
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5117
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// entre 4% e 8% representam risco intermediário, < 4% risco alto.
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5118
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// optimalMin anterior (5.5%) ficava em zona intermediária, contradizendo
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// a literatura e o próprio texto educacional do `platform`.
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Omega3_Total: {
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-
default: { max: 12, min: 3, optimalMax: 10, optimalMin:
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default: { max: 12, min: 3, optimalMax: 10, optimalMin: 8, unit: "%" },
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source: "harris-omega3-2004"
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},
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Omega6_Total: {
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@@ -5104,9 +5154,37 @@ var biomarkerRangeDefinitions = {
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default: { max: 38, min: 18, optimalMax: 35, optimalMin: 20, unit: "mg/dL" },
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source: "tietz-7ed-2015"
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},
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// Progesterona — varia drasticamente com a fase do ciclo menstrual.
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5158
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// O schema atual não modela fase do ciclo, então adotamos faixas amplas
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5159
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// por sexo: o `default` cobre homens/fase folicular/pós-menopausa; a
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5160
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// variante feminina expande até a faixa esperada de fase lútea
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5161
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// (~3-20 ng/mL). Interpretação correta exige correlação com a fase do
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5162
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// ciclo, indisponível neste contexto.
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Progesterone: {
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default: { max: 0.9, min: 0.1, optimalMax: 0.7, optimalMin: 0.2, unit: "ng/mL" },
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-
source: "tietz-7ed-2015"
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source: "tietz-7ed-2015",
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variants: [
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{
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ageMin: 18,
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range: { max: 0.9, min: 0.1, optimalMax: 0.6, optimalMin: 0.2, unit: "ng/mL" },
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sex: "M"
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},
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// Mulheres em idade reprodutiva: faixa que abarca fases folicular
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5173
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// (0.1-0.9 ng/mL) e lútea (3-20 ng/mL). Sem contexto de fase do ciclo,
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5174
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// valores intermediários (1-3 ng/mL) ficam em zona ambígua.
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{
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ageMax: 50,
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ageMin: 18,
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range: { max: 20, min: 0.1, optimalMax: 15, optimalMin: 0.2, unit: "ng/mL" },
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sex: "F"
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5180
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},
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// Pós-menopausa: valores tipicamente < 0.5 ng/mL (sem ovulação).
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{
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ageMin: 51,
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range: { max: 0.5, min: 0, optimalMax: 0.3, optimalMin: 0, unit: "ng/mL" },
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5185
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sex: "F"
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}
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]
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},
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Prolactin: {
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default: { max: 18, min: 2, optimalMax: 15, optimalMin: 4, unit: "ng/mL" },
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@@ -5384,8 +5462,13 @@ var biomarkerRangeDefinitions = {
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}
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]
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},
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5465
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// Ureia — convenção brasileira (laboratórios reportam Ureia, não BUN).
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// Faixa adulta de 15-50 mg/dL (Ureia ≈ BUN × 2,14). Limites anteriores
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5467
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// (7-20 mg/dL) refletiam BUN/Nitrogênio Ureico, gerando falsos diagnósticos
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5468
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// de azotemia em pacientes com Ureia normal. LOINC 3094-0 (BUN) também
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5469
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// deve ser revisto em biomarkers.ts — ver issue #41.
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Urea: {
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5388
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-
default: { max:
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5471
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default: { max: 50, min: 15, optimalMax: 40, optimalMin: 20, unit: "mg/dL" },
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source: "tietz-7ed-2015"
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},
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UricAcid: {
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@@ -6029,7 +6112,7 @@ async function main() {
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strict: false
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});
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if (values.version) {
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-
process.stdout.write(`${"0.15.
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process.stdout.write(`${"0.15.2"}
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`);
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return;
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}
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package/dist/converter.cjs
CHANGED
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var
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require('./chunk-
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var _chunkQ3O23BM7cjs = require('./chunk-Q3O23BM7.cjs');
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require('./chunk-3NZA6WMU.cjs');
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require('./chunk-MJ254F5K.cjs');
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-
exports.labObservationToFHIR =
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exports.labObservationToFHIR = _chunkQ3O23BM7cjs.labObservationToFHIR; exports.labReportToFHIR = _chunkQ3O23BM7cjs.labReportToFHIR; exports.labResultToFHIRBundle = _chunkQ3O23BM7cjs.labResultToFHIRBundle; exports.userProfileToFHIR = _chunkQ3O23BM7cjs.userProfileToFHIR;
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package/dist/converter.js
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labReportToFHIR,
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userProfileToFHIR
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} from "./chunk-5BDMX2JP.js";
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package/dist/importer.cjs
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exports.MAX_FILE_SIZE = _chunkY2SVZ6GEcjs.MAX_FILE_SIZE; exports.MAX_OBSERVATIONS = _chunkY2SVZ6GEcjs.MAX_OBSERVATIONS; exports.extractObservationsFromBundle = _chunkY2SVZ6GEcjs.extractObservationsFromBundle; exports.mapFHIRObservationToInternal = _chunkY2SVZ6GEcjs.mapFHIRObservationToInternal; exports.processImportBundle = _chunkY2SVZ6GEcjs.processImportBundle;
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} from "./chunk-4I5G4SJ6.js";
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package/dist/index.cjs
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function interventionsToFHIRBundle(interventions, userProfile) {
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const resource = isMedication ? interventionToFHIRMedicationStatement(intervention, patientId) : interventionToFHIRObservation(intervention, patientId);
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exports.AGE_BRACKETS = AGE_BRACKETS; exports.BIOMARKER_DEFAULT_UNIT = _chunkMJ254F5Kcjs.BIOMARKER_DEFAULT_UNIT; exports.BIOMARKER_DEFINITIONS =
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exports.AGE_BRACKETS = AGE_BRACKETS; exports.BIOMARKER_DEFAULT_UNIT = _chunkMJ254F5Kcjs.BIOMARKER_DEFAULT_UNIT; exports.BIOMARKER_DEFINITIONS = _chunk3NZA6WMUcjs.BIOMARKER_DEFINITIONS; exports.BIOMARKER_UNITS = _chunkMJ254F5Kcjs.BIOMARKER_UNITS; exports.BODY_FAT_ZONES = BODY_FAT_ZONES; exports.CAC_INDICATOR_CODES = _chunk3NZA6WMUcjs.CAC_INDICATOR_CODES; exports.CATEGORY_GROUPS = CATEGORY_GROUPS; exports.CATEGORY_SCREENING_INTERVALS = CATEGORY_SCREENING_INTERVALS; exports.DEXA_CATEGORIES = _chunk3NZA6WMUcjs.DEXA_CATEGORIES; exports.DEXA_INDICATOR_CODES = _chunk3NZA6WMUcjs.DEXA_INDICATOR_CODES; exports.MAX_FILE_SIZE = _chunkY2SVZ6GEcjs.MAX_FILE_SIZE; exports.MAX_OBSERVATIONS = _chunkY2SVZ6GEcjs.MAX_OBSERVATIONS; exports.T_SCORE_ZONES = T_SCORE_ZONES; exports.UNIT_TO_UCUM = _chunkMJ254F5Kcjs.UNIT_TO_UCUM; exports.ZONE_DEFS = ZONE_DEFS; exports.applyFallbackReferenceRanges = _chunkZKN5UI7Rcjs.applyFallbackReferenceRanges; exports.biomarkerRangeDefinitions = _chunkZKN5UI7Rcjs.biomarkerRangeDefinitions; exports.calculateNextScreeningDate = calculateNextScreeningDate; exports.cnsToFHIRIdentifier = cnsToFHIRIdentifier; exports.codeToLoinc = _chunk3NZA6WMUcjs.codeToLoinc; exports.convertUnit = _chunkMJ254F5Kcjs.convertUnit; exports.cpfToFHIRIdentifier = cpfToFHIRIdentifier; exports.defaultReferenceRanges = _chunkZKN5UI7Rcjs.defaultReferenceRanges; exports.extractObservationsFromBundle = _chunkY2SVZ6GEcjs.extractObservationsFromBundle; exports.filterVisibleBiomarkers = _chunk3NZA6WMUcjs.filterVisibleBiomarkers; exports.findCodeByName = _chunk3NZA6WMUcjs.findCodeByName; exports.formatCNS = formatCNS; exports.formatCPF = formatCPF; exports.generateCacFullReference = _chunk3NZA6WMUcjs.generateCacFullReference; exports.generateDexaFullReference = _chunk3NZA6WMUcjs.generateDexaFullReference; exports.generateFilteredLLMReference = _chunk3NZA6WMUcjs.generateFilteredLLMReference; exports.generateLLMReference = _chunk3NZA6WMUcjs.generateLLMReference; exports.getAllCodes = _chunk3NZA6WMUcjs.getAllCodes; exports.getAllDefinitions = _chunk3NZA6WMUcjs.getAllDefinitions; exports.getAllLoincCodes = _chunk3NZA6WMUcjs.getAllLoincCodes; exports.getAllSearchPatterns = _chunk3NZA6WMUcjs.getAllSearchPatterns; exports.getBiomarkersByCategory = _chunk3NZA6WMUcjs.getBiomarkersByCategory; exports.getBiomarkersForCategories = _chunk3NZA6WMUcjs.getBiomarkersForCategories; exports.getCanonicalUnit = _chunkMJ254F5Kcjs.getCanonicalUnit; exports.getCategoriesByInterval = getCategoriesByInterval; exports.getCategoryGroup = getCategoryGroup; exports.getDaysUntilScreening = getDaysUntilScreening; exports.getDefaultUnit = _chunkMJ254F5Kcjs.getDefaultUnit; exports.getDefinitionByCode = _chunk3NZA6WMUcjs.getDefinitionByCode; exports.getDefinitionByLoinc = _chunk3NZA6WMUcjs.getDefinitionByLoinc; exports.getDefinitionsBySex = _chunk3NZA6WMUcjs.getDefinitionsBySex; exports.getDueCategories = getDueCategories; exports.getFallbackReferenceRange = _chunkZKN5UI7Rcjs.getFallbackReferenceRange; exports.getRangeDirection = _chunkZKN5UI7Rcjs.getRangeDirection; exports.getReferenceRange = _chunkZKN5UI7Rcjs.getReferenceRange; exports.getSIUnit = _chunkMJ254F5Kcjs.getSIUnit; exports.getScreeningInterval = getScreeningInterval; exports.getSexForCode = _chunk3NZA6WMUcjs.getSexForCode; exports.getVisibleDefinitions = _chunk3NZA6WMUcjs.getVisibleDefinitions; exports.interventionToFHIRMedicationStatement = interventionToFHIRMedicationStatement; exports.interventionToFHIRObservation = interventionToFHIRObservation; exports.interventionsToFHIRBundle = interventionsToFHIRBundle; exports.isBiomarkerVisible = _chunk3NZA6WMUcjs.isBiomarkerVisible; exports.isCacDocument = _chunk3NZA6WMUcjs.isCacDocument; exports.isDexaDocument = _chunk3NZA6WMUcjs.isDexaDocument; exports.isScreeningDue = isScreeningDue; exports.isValidCode = _chunk3NZA6WMUcjs.isValidCode; exports.isValidLoinc = _chunk3NZA6WMUcjs.isValidLoinc; exports.labObservationToFHIR = _chunkQ3O23BM7cjs.labObservationToFHIR; exports.labReportToFHIR = _chunkQ3O23BM7cjs.labReportToFHIR; exports.labResultToFHIRBundle = _chunkQ3O23BM7cjs.labResultToFHIRBundle; exports.listMappedSubcategories = listMappedSubcategories; exports.loincToCode = _chunk3NZA6WMUcjs.loincToCode; exports.mapFHIRObservationToInternal = _chunkY2SVZ6GEcjs.mapFHIRObservationToInternal; exports.normalizeCode = _chunk3NZA6WMUcjs.normalizeCode; exports.plural = plural; exports.pluralCount = pluralCount; exports.pluralPhrase = pluralPhrase; exports.pluralPhraseCount = pluralPhraseCount; exports.processImportBundle = _chunkY2SVZ6GEcjs.processImportBundle; exports.toBiomarkerTests = _chunk3NZA6WMUcjs.toBiomarkerTests; exports.unitToUCUM = _chunkMJ254F5Kcjs.unitToUCUM; exports.userProfileToFHIR = _chunkQ3O23BM7cjs.userProfileToFHIR; exports.validateCNS = validateCNS; exports.validateCPF = validateCPF; exports.validateFHIRDiagnosticReport = _chunk3ILBFLVQcjs.validateFHIRDiagnosticReport; exports.validateFHIRImportBundle = _chunk3ILBFLVQcjs.validateFHIRImportBundle; exports.validateFHIRObservation = _chunk3ILBFLVQcjs.validateFHIRObservation; exports.validateLoincNameMatch = _chunk3NZA6WMUcjs.validateLoincNameMatch;
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//# sourceMappingURL=index.cjs.map
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package/dist/index.js
CHANGED
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labReportToFHIR,
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labResultToFHIRBundle,
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userProfileToFHIR
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} from "./chunk-5BDMX2JP.js";
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extractObservationsFromBundle,
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mapFHIRObservationToInternal,
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processImportBundle
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} from "./chunk-4I5G4SJ6.js";
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CAC_INDICATOR_CODES,
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normalizeCode,
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toBiomarkerTests,
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validateLoincNameMatch
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} from "./chunk-FEVGNEFO.js";
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applyFallbackReferenceRanges,
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biomarkerRangeDefinitions,
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getReferenceRange
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exports.applyFallbackReferenceRanges = _chunkZKN5UI7Rcjs.applyFallbackReferenceRanges; exports.biomarkerRangeDefinitions = _chunkZKN5UI7Rcjs.biomarkerRangeDefinitions; exports.defaultReferenceRanges = _chunkZKN5UI7Rcjs.defaultReferenceRanges; exports.getFallbackReferenceRange = _chunkZKN5UI7Rcjs.getFallbackReferenceRange; exports.getRangeDirection = _chunkZKN5UI7Rcjs.getRangeDirection; exports.getReferenceRange = _chunkZKN5UI7Rcjs.getReferenceRange;
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//# sourceMappingURL=reference-ranges.cjs.map
|
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CHANGED
package/package.json
CHANGED